| # Cell Segmentation Masks Dataset | |
| This repository contains NumPy mask files generated using AutoSeg-SAM2 for cell segmentation experiments. | |
| ## Dataset Structure | |
| The dataset is organized by experiment type and image number: | |
| ``` | |
| {experiment_type}/ | |
| └── image_{number}/ | |
| └── cached_masks.npy | |
| ``` | |
| ## Experiments Included | |
| ### Cdx2_Gata6_Oct4 | |
| Images: image_2, image_3, image_4 | |
| ### Sox2_Sox17 | |
| Images: image_1, image_2, image_3 | |
| ## Usage | |
| To load the NumPy mask files: | |
| ```python | |
| import numpy as np | |
| # Example for loading a mask file | |
| masks = np.load('Cdx2_Gata6_Oct4/image_1/cached_masks.npy', allow_pickle=True) | |
| ``` | |
| ## File Format | |
| Each `.npy` file contains cell segmentation masks generated using AutoSeg-SAM2, a modification of the Segment Anything Model 2 (SAM2) for automated cell segmentation. | |
| ## Citation | |
| If you use this dataset in your research, please cite: | |
| ``` | |
| @misc{yourarticle2025, | |
| title={Automated Cell Segmentation using SAM2}, | |
| author={Kumar, Komal and [Other Authors]}, | |
| year={2025}, | |
| publisher={ArXiv}, | |
| howpublished={\url{https://arxiv.org/abs/xxxx.xxxxx}} | |
| } | |
| ``` | |
| ## License | |
| This dataset is provided under [specify license]. Please refer to the LICENSE file for more details. | |
| ## Contact | |
| For questions or inquiries, please contact Komal Kumar. | |