SNFG stringlengths 26 26 | torsion_table stringlengths 39 39 | torsion_analysis stringlengths 2 10.3k | glytoucan stringlengths 8 8 ⌀ | ID stringlengths 7 7 | name stringlengths 10 243 | glycam stringlengths 5 238 | iupac stringlengths 3 236 | iupac_extended stringlengths 5 364 ⌀ | wurcs stringlengths 26 311 ⌀ | glycoct stringlengths 21 1.07k ⌀ | smiles stringlengths 30 1.05k ⌀ | oxford stringclasses 53
values | mass float64 150 4.19k ⌀ | motifs stringclasses 112
values | termini stringlengths 9 68 ⌀ | components stringlengths 10 100 | composition stringlengths 2 60 ⌀ | rot_bonds float64 0 73 ⌀ | hbond_donor float64 3 63 ⌀ | hbond_acceptor float64 5 102 ⌀ | entropy float64 4.68 15.6 | clusters stringlengths 2 100 | coverage_clusters stringlengths 2 929 | silhouette_scores stringlengths 171 182 | coverage_clusters_per_main stringlengths 52 197 | pca_variance stringlengths 478 497 | length float64 0 8 | package stringclasses 2
values | forcefield stringclasses 3
values | temperature float64 300 300 ⌀ | pressure float64 1 1 ⌀ | salt stringclasses 5
values | a_glycam stringlengths 10 243 | a_iupac stringlengths 7 240 | a_iupac_extended stringlengths 12 349 ⌀ | a_glytoucan stringlengths 8 8 ⌀ | a_wurcs stringlengths 33 318 ⌀ | b_glycam stringlengths 10 243 | b_iupac stringlengths 7 240 | b_iupac_extended stringlengths 12 371 ⌀ | b_glytoucan stringlengths 8 8 ⌀ | b_wurcs stringlengths 33 293 ⌀ | common_names stringclasses 66
values | description float64 | keywords stringclasses 11
values | calculated_torsion stringlengths 2 15.5k | a_calculated_torsion stringlengths 2 14.2k | b_calculated_torsion stringlengths 2 14.2k | glycosmos stringlengths 141 4.9k ⌀ | number_monosaccharides float64 1 21 ⌀ | species stringlengths 269 4.28k ⌀ | classification stringclasses 53
values | enzyme stringlengths 1.64k 35.6k ⌀ | crossref stringlengths 322 13.7k ⌀ | mass_pme float64 206 5.1k ⌀ | tool_support stringclasses 12
values | missing_score float64 93 1.97k ⌀ | glycan_type stringclasses 2
values | byonic stringlengths 20 54 ⌀ | gwb stringlengths 36 314 ⌀ | motifs.1 stringclasses 102
values | subsumption stringlengths 383 2.39k ⌀ | section_stats stringclasses 8
values | history stringclasses 9
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
./raw_dataGS00001/snfg.svg | ./torsion_data/GS00001_torsion_data.txt | {'Cluster 0': {'count': 14279, '3_2_phi_mean': -73.78, '3_2_psi_mean': 118.16, '3_2_phi_std': 13.23, '3_2_psi_std': 16.53}, 'Cluster 1': {'count': 10687, '3_2_phi_mean': -75.82, '3_2_psi_mean': 116.95, '3_2_phi_std': 17.6, '3_2_psi_std': 17.15}, 'Cluster 2': {'count': 8711, '3_2_phi_mean': -78.63, '3_2_psi_mean': 121.8... | G38695WE | GS00001 | DNeup5Gca2-3DGalpb1-4DGlcpa1-OH | DNeup5Gca2-3DGalpb1-4DGlcp | Neu5Gc(a2-3)Gal(b1-4)Glc | α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/3,3,2/[u2122h][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3/a4-b1_b3-c2 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,4s:n-glycolyl,LIN,1:1o(4+1)2d,2:2o(3+2)3d,3:3d(5+1)4n, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(=O)CO)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@H]1CO | null | 649.21 | null | Neu5Gc(a2-3) | {'Neu5Gc': 1, 'Gal': 1, 'Glc': 1} | {'Hex': 2, 'Neu5Gc': 1} | 12 | 14 | 20 | 10.065379 | {'Cluster 0': 35.69, 'Cluster 1': 26.71, 'Cluster 2': 21.78, 'Cluster 3': 12.18, 'Cluster 4': 3.63} | {'Cluster 0': 36.7488, 'Cluster 1': 21.6478, 'Cluster 2': 18.4257, 'Cluster 3': 8.4517, 'Cluster 4': 5.9144, 'Cluster 5': 3.7871, 'Cluster 6': 1.5498, 'Cluster 7': 1.1749, 'Cluster 8': 0.8124, 'Cluster 9': 0.6424, 'Cluster 10': 0.5549, 'Cluster 11': 0.145, 'Cluster 12': 0.1125, 'Cluster 13': 0.0325} | {'2': 0.3743617290500686, '3': 0.45777173998767523, '4': 0.4726679052710324, '5': 0.3790089243138171, '6': 0.35333630072941075, '7': 0.3519328541390717, '8': 0.3008343406916214} | {'0': [0, 8], '1': [4, 5, 13], '2': [2, 6, 9, 10], '3': [], '4': [1, 3, 7, 11, 12]} | {'explained_variance_ratio': [0.18115023375391787, 0.13429807144402506, 0.05944877857088233, 0.0458009543984269, 0.04396628214163917, 0.039212355211333316, 0.028738340455322968, 0.027442605146435633, 0.023284288855357136, 0.019321717847951395], 'cumulative_variance': [0.18115023375391787, 0.3154483051979429, 0.37489708... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Gca2-3DGalpb1-4DGlcpa1-OH | Neu5Gc(a2-3)Gal(b1-4)Glc(a1- | α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G50281RU | WURCS=2.0/3,3,2/[a2122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3/a4-b1_b3-c2 | DNeup5Gca2-3DGalpb1-4DGlcpb1-OH | Neu5Gc(a2-3)Gal(b1-4)Glc(b1- | α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G75789AR | WURCS=2.0/3,3,2/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3/a4-b1_b3-c2 | null | null | null | {'GLC2-GAL3': {'2': {'phi': -68.91, 'psi': 129.96, 'strain': 0.031, 'linkage': '1-4'}, '3': {'phi': -75.01, 'psi': 119.06, 'strain': -0.0, 'linkage': '1-4'}, '4': {'phi': -76.98, 'psi': 146.96, 'strain': 1.078, 'linkage': '1-4'}, '5': {'phi': -64.73, 'psi': 125.13, 'strain': 0.031, 'linkage': '1-4'}, '6': {'phi': -55.7... | {'GLC2-GAL3': {'2': {'phi': -68.91, 'psi': 129.96, 'strain': 0.031, 'linkage': '1-4'}, '3': {'phi': -74.97, 'psi': 119.07, 'strain': -0.0, 'linkage': '1-4'}, '4': {'phi': -76.95, 'psi': 146.88, 'strain': 1.078, 'linkage': '1-4'}, '5': {'phi': -64.76, 'psi': 125.18, 'strain': 0.031, 'linkage': '1-4'}, '6': {'phi': -55.7... | {'GLC2-GAL3': {'2': {'phi': -68.91, 'psi': 129.96, 'strain': 0.031, 'linkage': '1-4'}, '3': {'phi': -75.01, 'psi': 119.06, 'strain': -0.0, 'linkage': '1-4'}, '4': {'phi': -76.98, 'psi': 146.96, 'strain': 1.078, 'linkage': '1-4'}, '5': {'phi': -64.73, 'psi': 125.13, 'strain': 0.031, 'linkage': '1-4'}, '6': {'phi': -55.7... | {'taxon_id': '10114', 'taxon_label': 'Rattus', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G38695WE'}]};{'taxon_id': '562', 'taxon_label': 'Escherichia coli', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G38695WE'}]} | 3 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G75789AR', 'url': 'https://www.glygen.org/glycan/G75789AR'}], 'common_name': 'Bovine', 'glygen_name': 'Bovine', 'reference_species': 'Bos taurus [9913]'};{'taxid': 9606, 'name': 'Homo sapiens', 'a... | {'type': {'name': 'Human Milk Oligosaccharide'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G38695WE', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G38695... | {'id': '491892627', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491892627', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '693', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '11002', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+11002', 'database': 'Car... | 845.43 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | Hex(2)NeuGc(1) % 649.206542965 | freeEnd--?D-Glc--4b1D-Gal,p--3a2D-NeuGc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G03479FX', 'relationship': 'ancestor'};{'related_accession': 'G13697BC', 'relationship': 'ancestor'};{'related_accession': 'G15919RU', 'relationship': 'ancestor'};{'related_accession': 'G30664IS', 'relationship': 'ancestor'};{'related_accession': 'G64818UY', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00002/snfg.svg | ./torsion_data/GS00002_torsion_data.txt | {'Cluster 0': {'count': 9366, '3_2_phi_mean': -73.02, '3_2_psi_mean': -134.09, '4_3_phi_mean': 72.99, '4_3_psi_mean': 78.83, '5_4_phi_mean': -70.7, '5_4_psi_mean': 117.5, '3_2_phi_std': 12.38, '3_2_psi_std': 39.16, '4_3_phi_std': 13.31, '4_3_psi_std': 16.65, '5_4_phi_std': 13.87, '5_4_psi_std': 41.47}, 'Cluster 1': {'c... | G77095CK | GS00002 | LFucpa1-2DGalpa1-3DGalpb1-3DGalpNAca1-OH | LFucpa1-2DGalpa1-3DGalpb1-3DGalpNAc | Fuc(a1-2)Gal(a1-3)Gal(b1-3)GalNAc | α-L-Fucp-(1→2)-α-D-Galp-(1→3)-β-D-Galp-(1→3)-D-GalNAc | WURCS=2.0/4,4,3/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a2112h-1a_1-5][a1221m-1a_1-5]/1-2-3-4/a3-b1_b3-c1_c2-d1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgal-HEX-1:5,5b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(3+1)4d,4:4o(2+1)5d, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H]2O)[C@@H](O)[C@H]1CO | null | 691.25 | null | Fuc(a1-2) | {'Gal': 2, 'Fuc': 1, 'GalNAc': 1} | {'Hex': 2, 'HexNAc': 1, 'dHex': 1} | 1 | 5 | 6 | 11.053462 | {'Cluster 0': 31.22, 'Cluster 1': 28.21, 'Cluster 2': 23.87, 'Cluster 3': 14.6, 'Cluster 4': 2.1} | {'Cluster 0': 63.317, 'Cluster 1': 7.2893, 'Cluster 2': 7.0693, 'Cluster 3': 3.3663, 'Cluster 4': 3.3263, 'Cluster 5': 3.1797, 'Cluster 6': 2.9397, 'Cluster 7': 2.853, 'Cluster 8': 1.8698, 'Cluster 9': 1.5365, 'Cluster 10': 1.2799, 'Cluster 11': 0.7166, 'Cluster 12': 0.5933, 'Cluster 13': 0.27, 'Cluster 14': 0.1866, 'C... | {'2': 0.2537120834159503, '3': 0.2651599701494174, '4': 0.26777415109045893, '5': 0.24875551102427657, '6': 0.22408953560954303, '7': 0.24197301306873847, '8': 0.2437292540567247} | {'0': [0, 11, 14], '1': [4, 9, 15], '2': [1, 3, 5, 7, 8], '3': [12, 13], '4': [2, 6, 10, 16]} | {'explained_variance_ratio': [0.1418408815585701, 0.09351406683349578, 0.08838750022371136, 0.055751077188687576, 0.046459786231526724, 0.040272697259682286, 0.03744849566150897, 0.03194154026759392, 0.024115711862323606, 0.021596411999106436], 'cumulative_variance': [0.1418408815585701, 0.2353549483920659, 0.323742448... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-2DGalpa1-3DGalpb1-3DGalpNAca1-OH | Fuc(a1-2)Gal(a1-3)Gal(b1-3)GalNAc(a1- | α-L-Fucp-(1→2)-α-D-Galp-(1→3)-β-D-Galp-(1→3)-α-D-GalpNAc-(1→ | G77945NE | WURCS=2.0/4,4,3/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a2112h-1a_1-5][a1221m-1a_1-5]/1-2-3-4/a3-b1_b3-c1_c2-d1 | LFucpa1-2DGalpa1-3DGalpb1-3DGalpNAcb1-OH | Fuc(a1-2)Gal(a1-3)Gal(b1-3)GalNAc(b1- | α-L-Fucp-(1→2)-α-D-Galp-(1→3)-β-D-Galp-(1→3)-β-D-GalpNAc-(1→ | G56973FQ | WURCS=2.0/4,4,3/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a2112h-1a_1-5][a1221m-1a_1-5]/1-2-3-4/a3-b1_b3-c1_c2-d1 | null | null | O-Glycan | {'GLA4-FUC5': {'2': {'phi': -63.41, 'psi': 105.27, 'strain': 1.678, 'linkage': '1-2'}, '3': {'phi': -78.39, 'psi': 90.7, 'strain': 1.215, 'linkage': '1-2'}, '4': {'phi': -59.6, 'psi': 141.11, 'strain': 1.49, 'linkage': '1-2'}, '5': {'phi': -78.84, 'psi': 96.76, 'strain': 1.215, 'linkage': '1-2'}, '6': {'phi': -64.61, '... | {'GLA4-FUC5': {'2': {'phi': -63.41, 'psi': 105.27, 'strain': 1.678, 'linkage': '1-2'}, '3': {'phi': -78.39, 'psi': 90.7, 'strain': 1.215, 'linkage': '1-2'}, '4': {'phi': -59.64, 'psi': 141.17, 'strain': 1.49, 'linkage': '1-2'}, '5': {'phi': -78.82, 'psi': 96.84, 'strain': 1.215, 'linkage': '1-2'}, '6': {'phi': -64.55, ... | {'GLA4-FUC5': {'2': {'phi': -63.41, 'psi': 105.27, 'strain': 1.678, 'linkage': '1-2'}, '3': {'phi': -78.39, 'psi': 90.7, 'strain': 1.215, 'linkage': '1-2'}, '4': {'phi': -59.6, 'psi': 141.11, 'strain': 1.49, 'linkage': '1-2'}, '5': {'phi': -78.84, 'psi': 96.76, 'strain': 1.215, 'linkage': '1-2'}, '6': {'phi': -64.61, '... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00003/snfg.svg | ./torsion_data/GS00003_torsion_data.txt | {'Cluster 0': {'count': 11086, '3_2_phi_mean': 67.7, '3_2_psi_mean': -141.64, '3_2_phi_std': 9.73, '3_2_psi_std': 66.21}, 'Cluster 1': {'count': 8079, '3_2_phi_mean': 76.32, '3_2_psi_mean': -138.76, '3_2_phi_std': 15.39, '3_2_psi_std': 59.96}, 'Cluster 2': {'count': 8054, '3_2_phi_mean': 77.09, '3_2_psi_mean': -142.89,... | G85977BN | GS00003 | DNeup5Aca2-6[DGalpNAca1-3]DGalpNAca1-OH | DNeup5Aca2-6[DGalpNAca1-3]DGalpNAc | GalNAc(a1-3)[Neu5Ac(a2-6)]GalNAc | α-D-GalpNAc-(1→3)[α-D-Neup5Ac-(2→6)]-D-GalNAc | WURCS=2.0/3,3,2/[u2112h_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:a-dgal-HEX-1:5,4s:n-acetyl,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3d(2+1)4n,4:1o(6+2)5d,5:5d(5+1)6n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO[C@]2(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O2 | null | 715.26 | {'motif': 'G00040MO', 'motif_label': 'O-Glycan core 5 fuzzy'} | Neu5Ac(a2-6);GalNAc(a1-3) | {'GalNAc': 2, 'Neu5Ac': 1} | {'HexNAc': 2, 'Neu5Ac': 1} | 13 | 13 | 19 | 10.464279 | {'Cluster 0': 27.71, 'Cluster 1': 20.2, 'Cluster 2': 20.13, 'Cluster 3': 18.73, 'Cluster 4': 13.23} | {'Cluster 0': 46.4104, 'Cluster 1': 12.5687, 'Cluster 2': 9.1891, 'Cluster 3': 7.1418, 'Cluster 4': 4.9895, 'Cluster 5': 4.662, 'Cluster 6': 3.8446, 'Cluster 7': 3.3747, 'Cluster 8': 2.9547, 'Cluster 9': 2.3498, 'Cluster 10': 0.8724, 'Cluster 11': 0.5149, 'Cluster 12': 0.445, 'Cluster 13': 0.3575, 'Cluster 14': 0.325} | {'2': 0.4686227974556124, '3': 0.2988471956608357, '4': 0.24801213879093045, '5': 0.2783127672079413, '6': 0.25708867871832825, '7': 0.2339921358372634, '8': 0.2574539160585065} | {'0': [0, 3, 6], '1': [1, 5, 7, 9], '2': [10], '3': [2, 11, 12, 14], '4': [4, 8, 13]} | {'explained_variance_ratio': [0.2389547987036773, 0.0899807017165907, 0.06834249441829354, 0.04706146684763711, 0.03309650589979163, 0.031016652260967163, 0.029469176108677646, 0.026696055443026598, 0.023095128137842594, 0.02279866205820332], 'cumulative_variance': [0.2389547987036773, 0.328935500420268, 0.397277994838... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | Neutralising only. | DNeup5Aca2-6[DGalpNAca1-3]DGalpNAca1-OH | GalNAc(a1-3)[Neu5Ac(a2-6)]GalNAc(a1- | α-D-GalpNAc-(1→3)[α-D-Neup5Ac-(2→6)]-α-D-GalpNAc-(1→ | G81016SV | WURCS=2.0/2,3,2/[a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2/a3-b1_a6-c2 | DNeup5Aca2-6[DGalpNAca1-3]DGalpNAcb1-OH | GalNAc(a1-3)[Neu5Ac(a2-6)]GalNAc(b1- | α-D-GalpNAc-(1→3)[α-D-Neup5Ac-(2→6)]-β-D-GalpNAc-(1→ | G47058RI | WURCS=2.0/3,3,2/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2 | null | null | null | {'A2G2-A2G3': {'2': {'phi': 69.23, 'psi': -152.46, 'strain': 0.974, 'linkage': '1-3'}, '3': {'phi': 74.9, 'psi': -148.15, 'strain': 0.806, 'linkage': '1-3'}, '4': {'phi': 68.45, 'psi': -153.96, 'strain': 0.974, 'linkage': '1-3'}, '5': {'phi': 66.99, 'psi': -147.75, 'strain': 0.979, 'linkage': '1-3'}, '6': {'phi': 86.13... | {'A2G2-A2G3': {'2': {'phi': 69.23, 'psi': -152.46, 'strain': 0.974, 'linkage': '1-3'}, '3': {'phi': 74.95, 'psi': -148.17, 'strain': 0.806, 'linkage': '1-3'}, '4': {'phi': 68.46, 'psi': -153.93, 'strain': 0.974, 'linkage': '1-3'}, '5': {'phi': 67.02, 'psi': -147.76, 'strain': 0.979, 'linkage': '1-3'}, '6': {'phi': 86.0... | {'A2G2-A2G3': {'2': {'phi': 69.23, 'psi': -152.46, 'strain': 0.974, 'linkage': '1-3'}, '3': {'phi': 74.9, 'psi': -148.15, 'strain': 0.806, 'linkage': '1-3'}, '4': {'phi': 68.45, 'psi': -153.96, 'strain': 0.974, 'linkage': '1-3'}, '5': {'phi': 66.99, 'psi': -147.75, 'strain': 0.979, 'linkage': '1-3'}, '6': {'phi': 86.13... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00004/snfg.svg | ./torsion_data/GS00004_torsion_data.txt | {'Cluster 0': {'count': 10918, '3_2_phi_mean': -76.58, '3_2_psi_mean': -144.26, '3_2_phi_std': 12.45, '3_2_psi_std': 55.25}, 'Cluster 1': {'count': 10688, '3_2_phi_mean': -76.85, '3_2_psi_mean': -149.12, '3_2_phi_std': 10.56, '3_2_psi_std': 50.51}, 'Cluster 2': {'count': 9481, '3_2_phi_mean': -76.25, '3_2_psi_mean': -1... | G71222KY | GS00004 | DNeup5Aca2-6[DGlcpNAcb1-3]DGalpNAca1-OH | DNeup5Aca2-6[DGlcpNAcb1-3]DGalpNAc | GlcNAc(b1-3)[Neu5Ac(a2-6)]GalNAc | β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→6)]-D-GalNAc | WURCS=2.0/3,3,2/[u2112h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3d(2+1)4n,4:1o(6+2)5d,5:5d(5+1)6n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO[C@]2(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O2 | null | 715.26 | {'motif': 'G00036MO', 'motif_label': 'O-Glycan core 3 fuzzy'} | Neu5Ac(a2-6);GlcNAc(b1-3) | {'GlcNAc': 1, 'Neu5Ac': 1, 'GalNAc': 1} | {'HexNAc': 2, 'Neu5Ac': 1} | 13 | 13 | 19 | 9.959042 | {'Cluster 0': 27.29, 'Cluster 1': 26.72, 'Cluster 2': 23.7, 'Cluster 3': 16.72, 'Cluster 4': 5.57} | {'Cluster 0': 32.6742, 'Cluster 1': 31.1144, 'Cluster 2': 12.7462, 'Cluster 3': 8.7441, 'Cluster 4': 4.7745, 'Cluster 5': 2.4748, 'Cluster 6': 2.0973, 'Cluster 7': 1.9473, 'Cluster 8': 0.9524, 'Cluster 9': 0.7949, 'Cluster 10': 0.5899, 'Cluster 11': 0.5149, 'Cluster 12': 0.4675, 'Cluster 13': 0.1075} | {'2': 0.4982786578627117, '3': 0.42706458340012127, '4': 0.3952764653361819, '5': 0.41080011805518785, '6': 0.35845364388090806, '7': 0.37090449033413, '8': 0.38541893038860126} | {'0': [7], '1': [8, 9], '2': [2, 4, 5, 13], '3': [0, 11], '4': [1, 3, 6, 10, 12]} | {'explained_variance_ratio': [0.2612804911254766, 0.0955544944977664, 0.06636317709475165, 0.04032238817975529, 0.03325887604190297, 0.03021755748319266, 0.02757842082845966, 0.02701828301790658, 0.026020004293872554, 0.019535647710729295], 'cumulative_variance': [0.2612804911254766, 0.356834985623243, 0.42319816271799... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | Neutralising only. | DNeup5Aca2-6[DGlcpNAcb1-3]DGalpNAca1-OH | GlcNAc(b1-3)[Neu5Ac(a2-6)]GalNAc(a1- | β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→6)]-α-D-GalpNAc-(1→ | G63334FZ | WURCS=2.0/3,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2 | DNeup5Aca2-6[DGlcpNAcb1-3]DGalpNAcb1-OH | GlcNAc(b1-3)[Neu5Ac(a2-6)]GalNAc(b1- | β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→6)]-β-D-GalpNAc-(1→ | G11589YK | WURCS=2.0/3,3,2/[a2112h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2 | null | null | null | {'A2G2-NAG3': {'2': {'phi': -69.91, 'psi': -150.21, 'strain': 1.139, 'linkage': '1-3'}, '3': {'phi': -85.85, 'psi': -154.64, 'strain': 0.668, 'linkage': '1-3'}, '4': {'phi': -85.69, 'psi': -121.33, 'strain': 1.249, 'linkage': '1-3'}, '5': {'phi': -81.89, 'psi': -128.65, 'strain': 1.249, 'linkage': '1-3'}, '6': {'phi': ... | {'A2G2-NAG3': {'2': {'phi': -69.91, 'psi': -150.21, 'strain': 1.139, 'linkage': '1-3'}, '3': {'phi': -85.86, 'psi': -154.62, 'strain': 0.668, 'linkage': '1-3'}, '4': {'phi': -85.69, 'psi': -121.34, 'strain': 1.249, 'linkage': '1-3'}, '5': {'phi': -81.86, 'psi': -128.7, 'strain': 1.249, 'linkage': '1-3'}, '6': {'phi': -... | {'A2G2-NAG3': {'2': {'phi': -69.91, 'psi': -150.21, 'strain': 1.139, 'linkage': '1-3'}, '3': {'phi': -85.85, 'psi': -154.64, 'strain': 0.668, 'linkage': '1-3'}, '4': {'phi': -85.69, 'psi': -121.33, 'strain': 1.249, 'linkage': '1-3'}, '5': {'phi': -81.89, 'psi': -128.65, 'strain': 1.249, 'linkage': '1-3'}, '6': {'phi': ... | null | 3 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G63334FZ', 'url': 'https://www.glygen.org/glycan/G63334FZ'}, {'database': 'Subsumption', 'id': 'G77915WT', 'url': 'https://www.glygen.org/glycan/G77915WT'}], 'common_name': 'Bovine', 'glygen_name'... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 3'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G71222KY', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491860908', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491860908', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G71222KY', 'url': 'https://glytoucan.org/Structures/Glycans/G71222KY', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G71222KY', 'url': 'https://sandbox.... | 897.47 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(2)NeuAc(1) % 715.264726545 | freeEnd--?D-GalNAc(--3b1D-GlcNAc,p)--6a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000035', 'name': '6-Sialyl-GalNAc', 'synonym': '6-Sialyl LN (type 1); 6-Sialyl LN (type 2)'} | {'related_accession': 'G60414ZR', 'relationship': 'ancestor'};{'related_accession': 'G68985JM', 'relationship': 'ancestor'};{'related_accession': 'G81915OX', 'relationship': 'ancestor'};{'related_accession': 'G83049TZ', 'relationship': 'ancestor'};{'related_accession': 'G81915OX', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00005/snfg.svg | ./torsion_data/GS00005_torsion_data.txt | {'Cluster 0': {'count': 15228, '3_2_phi_mean': 76.84, '3_2_psi_mean': -143.14, '3_2_phi_std': 14.33, '3_2_psi_std': 36.61}, 'Cluster 1': {'count': 10535, '3_2_phi_mean': 71.23, '3_2_psi_mean': -145.59, '3_2_phi_std': 11.55, '3_2_psi_std': 40.16}, 'Cluster 2': {'count': 6855, '3_2_phi_mean': 84.17, '3_2_psi_mean': -136.... | G83524RP | GS00005 | DNeup5Aca2-6DGalpNAca1-3DGalpNAca1-OH | DNeup5Aca2-6DGalpNAca1-3DGalpNAc | Neu5Ac(a2-6)GalNAc(a1-3)GalNAc | α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→3)-D-GalNAc | WURCS=2.0/3,3,2/[u2112h_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:a-dgal-HEX-1:5,4s:n-acetyl,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3d(2+1)4n,4:3o(6+2)5d,5:5d(5+1)6n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@H]2O[C@H](CO[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H](O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO | null | 715.26 | null | Neu5Ac(a2-6) | {'GalNAc': 2, 'Neu5Ac': 1} | {'HexNAc': 2, 'Neu5Ac': 1} | 1 | 5 | 6 | 10.437557 | {'Cluster 0': 38.07, 'Cluster 1': 26.34, 'Cluster 2': 17.14, 'Cluster 3': 11.86, 'Cluster 4': 6.59} | {'Cluster 0': 30.42, 'Cluster 1': 20.68, 'Cluster 2': 15.725, 'Cluster 3': 10.875, 'Cluster 4': 7.2025, 'Cluster 5': 3.79, 'Cluster 6': 2.6475, 'Cluster 7': 2.52, 'Cluster 8': 2.3025, 'Cluster 9': 1.0475, 'Cluster 10': 0.7925, 'Cluster 11': 0.7025, 'Cluster 12': 0.6325, 'Cluster 13': 0.5325, 'Cluster 14': 0.13} | {'2': 0.3187043996789221, '3': 0.31982210979292497, '4': 0.24633433675227917, '5': 0.2749426973049708, '6': 0.2895656265908472, '7': 0.2758491855439608, '8': 0.2546721962630322} | {'0': [0, 5, 9], '1': [4, 8], '2': [2, 12], '3': [3, 6, 11, 13], '4': [1, 7, 10, 14]} | {'explained_variance_ratio': [0.209367679156003, 0.08505551091479106, 0.06254711593947809, 0.05899771563749251, 0.04361091192273983, 0.03551842634033918, 0.02997687216352789, 0.02905833833936949, 0.024320594665724716, 0.021562685553891497], 'cumulative_variance': [0.209367679156003, 0.29442319007079404, 0.3569703060102... | 2 | AMBER | GLYCAM_06j | 300 | 1 | Neutralising only. | DNeup5Aca2-6DGalpNAca1-3DGalpNAca1-OH | Neu5Ac(a2-6)GalNAc(a1-3)GalNAc(a1- | α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→3)-α-D-GalpNAc-(1→ | G90011PP | WURCS=2.0/2,3,2/[a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2/a3-b1_b6-c2 | DNeup5Aca2-6DGalpNAca1-3DGalpNAcb1-OH | Neu5Ac(a2-6)GalNAc(a1-3)GalNAc(b1- | α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→3)-β-D-GalpNAc-(1→ | G22701RO | WURCS=2.0/3,3,2/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2 | null | null | null | {'A2G2-A2G3': {'2': {'phi': 69.33, 'psi': -151.76, 'strain': 0.974, 'linkage': '1-3'}, '3': {'phi': 76.6, 'psi': -158.92, 'strain': 1.254, 'linkage': '1-3'}, '4': {'phi': 99.28, 'psi': -146.54, 'strain': 1.994, 'linkage': '1-3'}, '5': {'phi': 60.08, 'psi': -150.42, 'strain': 0.974, 'linkage': '1-3'}, '6': {'phi': 64.26... | {'A2G2-A2G3': {'2': {'phi': 69.33, 'psi': -151.76, 'strain': 0.974, 'linkage': '1-3'}, '3': {'phi': 76.65, 'psi': -158.93, 'strain': 1.254, 'linkage': '1-3'}, '4': {'phi': 99.41, 'psi': -146.62, 'strain': 1.994, 'linkage': '1-3'}, '5': {'phi': 60.0, 'psi': -150.35, 'strain': 0.974, 'linkage': '1-3'}, '6': {'phi': 64.22... | {'A2G2-A2G3': {'2': {'phi': 69.33, 'psi': -151.76, 'strain': 0.974, 'linkage': '1-3'}, '3': {'phi': 76.6, 'psi': -158.92, 'strain': 1.254, 'linkage': '1-3'}, '4': {'phi': 99.28, 'psi': -146.54, 'strain': 1.994, 'linkage': '1-3'}, '5': {'phi': 60.08, 'psi': -150.42, 'strain': 0.974, 'linkage': '1-3'}, '6': {'phi': 64.26... | null | 3 | null | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 5'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G83524RP', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': 'G83524RP', 'url': 'https://glytoucan.org/Structures/Glycans/G83524RP', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G83524RP', 'url': 'https://sandbox.glyomics.org/explore.html?G83524RP', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G83524RP', 'url': 'https://gnome.glyom... | 897.47 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(2)NeuAc(1) % 715.264726545 | freeEnd--?D-GalNAc--3a1D-GalNAc,p--6a2D-NeuAc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G03155HR', 'relationship': 'ancestor'};{'related_accession': 'G07707ZV', 'relationship': 'ancestor'};{'related_accession': 'G17856AF', 'relationship': 'ancestor'};{'related_accession': 'G54095CK', 'relationship': 'ancestor'};{'related_accession': 'G68985JM', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00006/snfg.svg | ./torsion_data/GS00006_torsion_data.txt | {'Cluster 0': {'count': 15278, '3_2_phi_mean': -69.55, '3_2_psi_mean': -117.95, '3_2_phi_std': 8.61, '3_2_psi_std': 14.79}, 'Cluster 1': {'count': 9783, '3_2_phi_mean': -70.36, '3_2_psi_mean': -124.77, '3_2_phi_std': 9.16, '3_2_psi_std': 18.61}, 'Cluster 2': {'count': 8399, '3_2_phi_mean': -72.99, '3_2_psi_mean': -110.... | G03213SR | GS00006 | DNeup5Aca2-6DGalpNAcb1-3DGlcpNAca1-OH | DNeup5Aca2-6DGalpNAcb1-3DGlcpNAc | Neu5Ac(a2-6)GalNAc(b1-3)GlcNAc | α-D-Neup5Ac-(2→6)-β-D-GalpNAc-(1→3)-D-GlcNAc | WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4s:n-acetyl,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3d(2+1)4n,4:3o(6+2)5d,5:5d(5+1)6n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H](O)[C@H](O)[C@H]2NC(C)=O)[C@H](O)[C@H]1CO | null | 715.26 | null | Neu5Ac(a2-6) | {'Neu5Ac': 1, 'GalNAc': 1, 'GlcNAc': 1} | {'HexNAc': 2, 'Neu5Ac': 1} | 1 | 5 | 6 | 9.663514 | {'Cluster 0': 38.2, 'Cluster 1': 24.46, 'Cluster 2': 21.0, 'Cluster 3': 8.97, 'Cluster 4': 7.38} | {'Cluster 0': 24.915, 'Cluster 1': 24.265, 'Cluster 2': 17.7225, 'Cluster 3': 11.3975, 'Cluster 4': 5.13, 'Cluster 5': 5.04, 'Cluster 6': 4.69, 'Cluster 7': 2.875, 'Cluster 8': 1.4675, 'Cluster 9': 1.07, 'Cluster 10': 0.6575, 'Cluster 11': 0.56, 'Cluster 12': 0.21} | {'2': 0.41220992253578836, '3': 0.3867448422078039, '4': 0.47778466254094837, '5': 0.48620588382521773, '6': 0.42305109431791316, '7': 0.41470319542392364, '8': 0.4158753045096378} | {'0': [4], '1': [3, 5, 6, 10], '2': [0, 7, 8, 12], '3': [2, 9], '4': [1, 11]} | {'explained_variance_ratio': [0.18747539396549934, 0.10725639656819443, 0.08836070217564834, 0.05739654436879192, 0.051356231829529815, 0.031687482616409364, 0.030511760938167987, 0.028065915226691492, 0.024058024775358105, 0.02121763731603428], 'cumulative_variance': [0.18747539396549934, 0.29473179053369375, 0.383092... | 2 | AMBER | GLYCAM_06j | 300 | 1 | Neutralising only. | DNeup5Aca2-6DGalpNAcb1-3DGlcpNAca1-OH | Neu5Ac(a2-6)GalNAc(b1-3)GlcNAc(a1- | α-D-Neup5Ac-(2→6)-β-D-GalpNAc-(1→3)-α-D-GlcpNAc-(1→ | G26133AM | WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2 | DNeup5Aca2-6DGalpNAcb1-3DGlcpNAcb1-OH | Neu5Ac(a2-6)GalNAc(b1-3)GlcNAc(b1- | α-D-Neup5Ac-(2→6)-β-D-GalpNAc-(1→3)-β-D-GlcpNAc-(1→ | G34742RW | WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2 | null | null | null | {'NDG2-GLC3': {'2': {'phi': -64.33, 'psi': -124.04, 'strain': 0.882, 'linkage': '1-3'}, '3': {'phi': -61.45, 'psi': -125.76, 'strain': 0.882, 'linkage': '1-3'}, '4': {'phi': -70.4, 'psi': -127.01, 'strain': 0.86, 'linkage': '1-3'}, '5': {'phi': -71.99, 'psi': -113.32, 'strain': 0.704, 'linkage': '1-3'}, '6': {'phi': -7... | {'NDG2-GLC3': {'2': {'phi': -64.33, 'psi': -124.04, 'strain': 0.882, 'linkage': '1-3'}, '3': {'phi': -61.39, 'psi': -125.83, 'strain': 0.882, 'linkage': '1-3'}, '4': {'phi': -70.4, 'psi': -126.98, 'strain': 0.86, 'linkage': '1-3'}, '5': {'phi': -71.96, 'psi': -113.33, 'strain': 0.704, 'linkage': '1-3'}, '6': {'phi': -7... | {'NDG2-GLC3': {'2': {'phi': -64.33, 'psi': -124.04, 'strain': 0.882, 'linkage': '1-3'}, '3': {'phi': -61.45, 'psi': -125.76, 'strain': 0.882, 'linkage': '1-3'}, '4': {'phi': -70.4, 'psi': -127.01, 'strain': 0.86, 'linkage': '1-3'}, '5': {'phi': -71.99, 'psi': -113.32, 'strain': 0.704, 'linkage': '1-3'}, '6': {'phi': -7... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00007/snfg.svg | ./torsion_data/GS00007_torsion_data.txt | {'Cluster 0': {'count': 12621, '3_2_phi_mean': -76.86, '3_2_psi_mean': 103.57, '3_2_phi_std': 18.05, '3_2_psi_std': 51.22}, 'Cluster 1': {'count': 9802, '3_2_phi_mean': -75.14, '3_2_psi_mean': 112.11, '3_2_phi_std': 21.9, '3_2_psi_std': 41.52}, 'Cluster 2': {'count': 6631, '3_2_phi_mean': -73.37, '3_2_psi_mean': 111.5,... | G94917JX | GS00007 | DNeup5Aca2-8DNeup5Gca2-3DGalpb1-4DGlcpa1-OH | DNeup5Aca2-8DNeup5Gca2-3DGalpb1-4DGlcp | Neu5Ac(a2-8)Neu5Gc(a2-3)Gal(b1-4)Glc | α-D-Neup5Ac-(2→8)-α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,4,3/[u2122h][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a4-b1_b3-c2_c8-d2 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,4s:n-glycolyl,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-acetyl,LIN,1:1o(4+1)2d,2:2o(3+2)3d,3:3d(5+1)4n,4:3o(8+2)5d,5:5d(5+1)6n, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(=O)CO)[C@H]([C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)CO)O3)[C@H]2O)[C@H]1CO | null | 940.3 | null | Neu5Ac(a2-8) | {'Neu5Ac': 1, 'Neu5Gc': 1, 'Gal': 1, 'Glc': 1} | {'Hex': 2, 'Neu5Ac': 1, 'Neu5Gc': 1} | 19 | 19 | 28 | 10.707703 | {'Cluster 0': 31.55, 'Cluster 1': 24.5, 'Cluster 2': 16.58, 'Cluster 3': 14.34, 'Cluster 4': 13.03} | {'Cluster 0': 15.8734, 'Cluster 1': 14.2611, 'Cluster 2': 14.2386, 'Cluster 3': 11.3339, 'Cluster 4': 8.4167, 'Cluster 5': 8.2667, 'Cluster 6': 5.8944, 'Cluster 7': 4.4371, 'Cluster 8': 4.2771, 'Cluster 9': 3.8371, 'Cluster 10': 3.3347, 'Cluster 11': 1.8248, 'Cluster 12': 1.6848, 'Cluster 13': 1.1699, 'Cluster 14': 0.6... | {'2': 0.45535830804219324, '3': 0.3561065795330679, '4': 0.4060407130033886, '5': 0.3932355431472113, '6': 0.37844456367800405, '7': 0.38159005899729737, '8': 0.37053410852010754} | {'0': [3], '1': [4, 8], '2': [1, 7, 10], '3': [2, 5, 9, 12, 14], '4': [0, 6, 11, 13, 15]} | {'explained_variance_ratio': [0.21886712040169298, 0.08029024583929258, 0.07859610411262942, 0.06667138304990514, 0.04970547677638114, 0.034059708292307346, 0.025905789121971903, 0.02400529454986989, 0.02349105548365696, 0.019168852549304], 'cumulative_variance': [0.21886712040169298, 0.29915736624098554, 0.37775347035... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-8DNeup5Gca2-3DGalpb1-4DGlcpa1-OH | Neu5Ac(a2-8)Neu5Gc(a2-3)Gal(b1-4)Glc(a1- | α-D-Neup5Ac-(2→8)-α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G83903NJ | WURCS=2.0/4,4,3/[a2122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a4-b1_b3-c2_c8-d2 | DNeup5Aca2-8DNeup5Gca2-3DGalpb1-4DGlcpb1-OH | Neu5Ac(a2-8)Neu5Gc(a2-3)Gal(b1-4)Glc(b1- | α-D-Neup5Ac-(2→8)-α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G27243GN | WURCS=2.0/4,4,3/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a4-b1_b3-c2_c8-d2 | null | null | null | {'GLC2-GAL3': {'2': {'phi': -76.72, 'psi': 106.6, 'strain': 0.169, 'linkage': '1-4'}, '3': {'phi': -67.11, 'psi': 114.93, 'strain': 0.16, 'linkage': '1-4'}, '4': {'phi': -80.1, 'psi': 82.54, 'strain': 1.192, 'linkage': '1-4'}, '5': {'phi': -68.19, 'psi': 150.85, 'strain': 2.077, 'linkage': '1-4'}, '6': {'phi': -65.54, ... | {'GLC2-GAL3': {'2': {'phi': -76.72, 'psi': 106.6, 'strain': 0.169, 'linkage': '1-4'}, '3': {'phi': -67.1, 'psi': 114.9, 'strain': 0.16, 'linkage': '1-4'}, '4': {'phi': -80.16, 'psi': 82.59, 'strain': 1.192, 'linkage': '1-4'}, '5': {'phi': -68.23, 'psi': 150.89, 'strain': 2.077, 'linkage': '1-4'}, '6': {'phi': -65.53, '... | {'GLC2-GAL3': {'2': {'phi': -76.72, 'psi': 106.6, 'strain': 0.169, 'linkage': '1-4'}, '3': {'phi': -67.11, 'psi': 114.93, 'strain': 0.16, 'linkage': '1-4'}, '4': {'phi': -80.1, 'psi': 82.54, 'strain': 1.192, 'linkage': '1-4'}, '5': {'phi': -68.19, 'psi': 150.85, 'strain': 2.077, 'linkage': '1-4'}, '6': {'phi': -65.54, ... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00008/snfg.svg | ./torsion_data/GS00008_torsion_data.txt | {'Cluster 0': {'count': 15132, '3_2_phi_mean': -76.54, '3_2_psi_mean': 108.48, '3_2_phi_std': 17.28, '3_2_psi_std': 42.25}, 'Cluster 1': {'count': 10559, '3_2_phi_mean': -75.6, '3_2_psi_mean': 114.08, '3_2_phi_std': 17.62, '3_2_psi_std': 26.83}, 'Cluster 2': {'count': 5317, '3_2_phi_mean': -75.84, '3_2_psi_mean': 112.1... | G33391ZV | GS00008 | DNeup5Gca2-8DNeup5Aca2-3DGalpb1-4DGlcpa1-OH | DNeup5Gca2-8DNeup5Aca2-3DGalpb1-4DGlcp | Neu5Gc(a2-8)Neu5Ac(a2-3)Gal(b1-4)Glc | α-D-Neup5Gc-(2→8)-α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,4,3/[u2122h][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3-4/a4-b1_b3-c2_c8-d2 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,4s:n-acetyl,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-glycolyl,LIN,1:1o(4+1)2d,2:2o(3+2)3d,3:3d(5+1)4n,4:3o(8+2)5d,5:5d(5+1)6n, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(=O)CO)[C@H]([C@H](O)[C@H](O)CO)O4)CO)O3)[C@H]2O)[C@H]1CO | null | 940.3 | {'motif': 'G30207PZ', 'motif_label': 'GM4'} | Neu5Gc(a2-8) | {'Neu5Gc': 1, 'Neu5Ac': 1, 'Gal': 1, 'Glc': 1} | {'Hex': 2, 'Neu5Ac': 1, 'Neu5Gc': 1} | 19 | 19 | 28 | 10.553144 | {'Cluster 0': 37.83, 'Cluster 1': 26.39, 'Cluster 2': 13.29, 'Cluster 3': 11.98, 'Cluster 4': 10.51} | {'Cluster 0': 35.5239, 'Cluster 1': 10.9239, 'Cluster 2': 8.3967, 'Cluster 3': 7.8367, 'Cluster 4': 7.8092, 'Cluster 5': 7.2393, 'Cluster 6': 5.4695, 'Cluster 7': 3.8746, 'Cluster 8': 3.2872, 'Cluster 9': 2.7172, 'Cluster 10': 2.4198, 'Cluster 11': 1.9348, 'Cluster 12': 1.7273, 'Cluster 13': 0.5299, 'Cluster 14': 0.31} | {'2': 0.3812085952951624, '3': 0.3759715492608046, '4': 0.4089426322494262, '5': 0.40513575607239033, '6': 0.452127301043622, '7': 0.4060851458700137, '8': 0.38318710972970205} | {'0': [2, 13], '1': [3, 6, 12], '2': [0, 7, 10], '3': [1, 4, 5, 8, 9, 11], '4': [14]} | {'explained_variance_ratio': [0.2203073753279766, 0.08970044506989307, 0.06410881751091775, 0.055827312762647935, 0.0478239003184528, 0.034016096992532545, 0.02817376573536594, 0.022158615529525916, 0.021833201893690285, 0.02060482673233815], 'cumulative_variance': [0.2203073753279766, 0.31000782039786967, 0.3741166379... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Gca2-8DNeup5Aca2-3DGalpb1-4DGlcpa1-OH | Neu5Gc(a2-8)Neu5Ac(a2-3)Gal(b1-4)Glc(a1- | α-D-Neup5Gc-(2→8)-α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G24100LD | WURCS=2.0/4,4,3/[a2122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3-4/a4-b1_b3-c2_c8-d2 | DNeup5Gca2-8DNeup5Aca2-3DGalpb1-4DGlcpb1-OH | Neu5Gc(a2-8)Neu5Ac(a2-3)Gal(b1-4)Glc(b1- | α-D-Neup5Gc-(2→8)-α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G80829RZ | WURCS=2.0/4,4,3/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3-4/a4-b1_b3-c2_c8-d2 | null | null | null | {'GLC2-GAL3': {'2': {'phi': -80.06, 'psi': 115.6, 'strain': 0.5, 'linkage': '1-4'}, '3': {'phi': -59.84, 'psi': 107.62, 'strain': 1.494, 'linkage': '1-4'}, '4': {'phi': -85.43, 'psi': 117.21, 'strain': 0.5, 'linkage': '1-4'}, '5': {'phi': -69.72, 'psi': 120.32, 'strain': 0.031, 'linkage': '1-4'}, '6': {'phi': -76.88, '... | {'GLC2-GAL3': {'2': {'phi': -80.06, 'psi': 115.6, 'strain': 0.5, 'linkage': '1-4'}, '3': {'phi': -59.91, 'psi': 107.64, 'strain': 1.494, 'linkage': '1-4'}, '4': {'phi': -85.48, 'psi': 117.24, 'strain': 0.5, 'linkage': '1-4'}, '5': {'phi': -69.74, 'psi': 120.36, 'strain': 0.031, 'linkage': '1-4'}, '6': {'phi': -76.91, '... | {'GLC2-GAL3': {'2': {'phi': -80.06, 'psi': 115.6, 'strain': 0.5, 'linkage': '1-4'}, '3': {'phi': -59.84, 'psi': 107.62, 'strain': 1.494, 'linkage': '1-4'}, '4': {'phi': -85.43, 'psi': 117.21, 'strain': 0.5, 'linkage': '1-4'}, '5': {'phi': -69.72, 'psi': 120.32, 'strain': 0.031, 'linkage': '1-4'}, '6': {'phi': -76.88, '... | null | 4 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G80829RZ', 'url': 'https://www.glygen.org/glycan/G80829RZ'}], 'common_name': 'Bovine', 'glygen_name': 'Bovine', 'reference_species': 'Bos taurus [9913]'};{'taxid': 9606, 'name': 'Homo sapiens', 'a... | {'type': {'name': 'Human Milk Oligosaccharide'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G33391ZV', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G33391... | {'id': '491943499', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491943499', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G33391ZV', 'url': 'https://glytoucan.org/Structures/Glycans/G33391ZV', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G33391ZV', 'url': 'https://sandbox.... | 1,206.6 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | Hex(2)NeuAc(1)NeuGc(1) % 940.3019596 | freeEnd--?D-Glc--4b1D-Gal,p--3a2D-NeuAc,p--8a2D-NeuGc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G22314RO', 'relationship': 'ancestor'};{'related_accession': 'G40099VD', 'relationship': 'ancestor'};{'related_accession': 'G87423KS', 'relationship': 'ancestor'};{'related_accession': 'G89606GV', 'relationship': 'ancestor'};{'related_accession': 'G40099VD', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00009/snfg.svg | ./torsion_data/GS00009_torsion_data.txt | {'Cluster 0': {'count': 12833, '3_2_phi_mean': -76.04, '3_2_psi_mean': 114.34, '3_2_phi_std': 15.35, '3_2_psi_std': 29.53}, 'Cluster 1': {'count': 10123, '3_2_phi_mean': -75.3, '3_2_psi_mean': 116.42, '3_2_phi_std': 16.6, '3_2_psi_std': 29.39}, 'Cluster 2': {'count': 9283, '3_2_phi_mean': -76.13, '3_2_psi_mean': 114.11... | G08380SA | GS00009 | DNeup5Gca2-8DNeup5Gca2-3DGalpb1-4DGlcpa1-OH | DNeup5Gca2-8DNeup5Gca2-3DGalpb1-4DGlcp | Neu5Gc(a2-8)Neu5Gc(a2-3)Gal(b1-4)Glc | α-D-Neup5Gc-(2→8)-α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/3,4,3/[u2122h][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3-3/a4-b1_b3-c2_c8-d2 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,4s:n-glycolyl,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-glycolyl,LIN,1:1o(4+1)2d,2:2o(3+2)3d,3:3d(5+1)4n,4:3o(8+2)5d,5:5d(5+1)6n, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(=O)CO)[C@H]([C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(=O)CO)[C@H]([C@H](O)[C@H](O)CO)O4)CO)O3)[C@H]2O)[C@H]1CO | null | 956.3 | null | Neu5Gc(a2-8) | {'Neu5Gc': 2, 'Gal': 1, 'Glc': 1} | {'Hex': 2, 'Neu5Gc': 2} | 20 | 20 | 29 | 10.805481 | {'Cluster 0': 32.08, 'Cluster 1': 25.3, 'Cluster 2': 23.21, 'Cluster 3': 11.69, 'Cluster 4': 7.72} | {'Cluster 0': 27.8822, 'Cluster 1': 17.0908, 'Cluster 2': 11.6163, 'Cluster 3': 10.034, 'Cluster 4': 7.3418, 'Cluster 5': 6.3744, 'Cluster 6': 4.5595, 'Cluster 7': 3.4872, 'Cluster 8': 3.0547, 'Cluster 9': 2.2748, 'Cluster 10': 2.1323, 'Cluster 11': 1.3099, 'Cluster 12': 1.1799, 'Cluster 13': 1.0924, 'Cluster 14': 0.39... | {'2': 0.4235400195221006, '3': 0.46440162389493395, '4': 0.38424521358320973, '5': 0.3357896686176932, '6': 0.4025939836546814, '7': 0.34528738901105505, '8': 0.3583959188489479} | {'0': [6, 9], '1': [5, 7], '2': [1, 8, 13, 15], '3': [0, 3, 4, 12], '4': [2, 10, 11, 14]} | {'explained_variance_ratio': [0.2033782024129014, 0.1103692768641323, 0.07622869773395007, 0.06283938040490102, 0.03359856153487094, 0.03158493250806797, 0.025839756056870736, 0.023345760655439574, 0.02067505233550986, 0.01953012384465586], 'cumulative_variance': [0.2033782024129014, 0.31374747927703367, 0.389976177010... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Gca2-8DNeup5Gca2-3DGalpb1-4DGlcpa1-OH | Neu5Gc(a2-8)Neu5Gc(a2-3)Gal(b1-4)Glc(a1- | α-D-Neup5Gc-(2→8)-α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G85971RS | WURCS=2.0/3,4,3/[a2122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3-3/a4-b1_b3-c2_c8-d2 | DNeup5Gca2-8DNeup5Gca2-3DGalpb1-4DGlcpb1-OH | Neu5Gc(a2-8)Neu5Gc(a2-3)Gal(b1-4)Glc(b1- | α-D-Neup5Gc-(2→8)-α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G84891DZ | WURCS=2.0/3,4,3/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3-3/a4-b1_b3-c2_c8-d2 | null | null | null | {'GLC2-GAL3': {'2': {'phi': -69.95, 'psi': 117.22, 'strain': 0.16, 'linkage': '1-4'}, '3': {'phi': -91.46, 'psi': 114.66, 'strain': 1.523, 'linkage': '1-4'}, '4': {'phi': -73.58, 'psi': 116.61, 'strain': -0.0, 'linkage': '1-4'}, '5': {'phi': -81.0, 'psi': 127.47, 'strain': 0.775, 'linkage': '1-4'}, '6': {'phi': -84.56,... | {'GLC2-GAL3': {'2': {'phi': -69.95, 'psi': 117.22, 'strain': 0.16, 'linkage': '1-4'}, '3': {'phi': -91.48, 'psi': 114.68, 'strain': 1.523, 'linkage': '1-4'}, '4': {'phi': -73.64, 'psi': 116.62, 'strain': -0.0, 'linkage': '1-4'}, '5': {'phi': -81.05, 'psi': 127.51, 'strain': 0.775, 'linkage': '1-4'}, '6': {'phi': -84.54... | {'GLC2-GAL3': {'2': {'phi': -69.95, 'psi': 117.22, 'strain': 0.16, 'linkage': '1-4'}, '3': {'phi': -91.46, 'psi': 114.66, 'strain': 1.523, 'linkage': '1-4'}, '4': {'phi': -73.58, 'psi': 116.61, 'strain': -0.0, 'linkage': '1-4'}, '5': {'phi': -81.0, 'psi': 127.47, 'strain': 0.775, 'linkage': '1-4'}, '6': {'phi': -84.56,... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00010/snfg.svg | ./torsion_data/GS00010_torsion_data.txt | {'Cluster 0': {'count': 11181, '3_2_phi_mean': -75.28, '3_2_psi_mean': 116.66, '4_3_phi_mean': 72.48, '4_3_psi_mean': 86.62, '5_4_phi_mean': -85.59, '5_4_psi_mean': -136.85, '3_2_phi_std': 14.3, '3_2_psi_std': 18.27, '4_3_phi_std': 15.85, '4_3_psi_std': 27.03, '5_4_phi_std': 13.06, '5_4_psi_std': 61.34}, 'Cluster 1': {... | G00012MO | GS00010 | DGalpNAcb1-3DGalpa1-3DGalpb1-4DGlcpa1-OH | DGalpNAcb1-3DGalpa1-3DGalpb1-4DGlcp | GalNAc(b1-3)Gal(a1-3)Gal(b1-4)Glc | β-D-GalpNAc-(1→3)-α-D-Galp-(1→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,4,3/[u2122h][a2112h-1b_1-5][a2112h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4/a4-b1_b3-c1_c3-d1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:a-dgal-HEX-1:5,4b:b-dgal-HEX-1:5,5s:n-acetyl,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3o(3+1)4d,4:4d(2+1)5n, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H]3O)[C@H]2O)[C@H]1CO | null | 707.25 | {'motif': 'G24432YB', 'motif_label': 'a-Gal antigen'} | GalNAc(b1-3) | {'Gal': 2, 'GalNAc': 1, 'Glc': 1} | {'Hex': 3, 'HexNAc': 1} | 11 | 14 | 21 | 10.390486 | {'Cluster 0': 37.27, 'Cluster 1': 25.65, 'Cluster 2': 17.4, 'Cluster 3': 16.64, 'Cluster 4': 3.04} | {'Cluster 0': 25.8, 'Cluster 1': 22.3833, 'Cluster 2': 14.3167, 'Cluster 3': 12.16, 'Cluster 4': 8.9933, 'Cluster 5': 7.0067, 'Cluster 6': 2.5067, 'Cluster 7': 2.3967, 'Cluster 8': 2.1233, 'Cluster 9': 1.0833, 'Cluster 10': 0.77, 'Cluster 11': 0.2, 'Cluster 12': 0.1833, 'Cluster 13': 0.0733, 'Cluster 14': 0.0033} | {'2': 0.40993027587801945, '3': 0.28753618251065116, '4': 0.3025062624418661, '5': 0.22931115531130314, '6': 0.22611579506782156, '7': 0.202274876710624, '8': 0.20400928923661882} | {'0': [], '1': [4, 13, 14], '2': [1, 2, 3, 6, 8, 9, 11], '3': [0, 7, 12], '4': [5, 10]} | {'explained_variance_ratio': [0.13112974693516286, 0.10503144186892395, 0.09688326267273123, 0.07670297555477293, 0.06164829882313905, 0.035725517627707086, 0.03125369957377917, 0.023774253976859894, 0.023091782329564388, 0.022434123782899], 'cumulative_variance': [0.13112974693516286, 0.23616118880408682, 0.3330444514... | 1.5 | AMBER | GLYCAM_06j | 300 | 1 | 150 | DGalpNAcb1-3DGalpa1-3DGalpb1-4DGlcpa1-OH | GalNAc(b1-3)Gal(a1-3)Gal(b1-4)Glc(a1- | β-D-GalpNAc-(1→3)-α-D-Galp-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G54440EA | WURCS=2.0/4,4,3/[a2122h-1a_1-5][a2112h-1b_1-5][a2112h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4/a4-b1_b3-c1_c3-d1 | DGalpNAcb1-3DGalpa1-3DGalpb1-4DGlcpb1-OH | GalNAc(b1-3)Gal(a1-3)Gal(b1-4)Glc(b1- | β-D-GalpNAc-(1→3)-α-D-Galp-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G57710SU | WURCS=2.0/4,4,3/[a2122h-1b_1-5][a2112h-1b_1-5][a2112h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4/a4-b1_b3-c1_c3-d1 | null | null | null | {'GAL3-GLA4': {'2': {'phi': 67.26, 'psi': -171.66, 'strain': 1.618, 'linkage': '1-3'}, '3': {'phi': 58.81, 'psi': -151.95, 'strain': 1.506, 'linkage': '1-3'}, '4': {'phi': 81.04, 'psi': -88.25, 'strain': 1.349, 'linkage': '1-3'}, '5': {'phi': 58.66, 'psi': -134.66, 'strain': 1.819, 'linkage': '1-3'}, '6': {'phi': 73.1,... | {'GAL3-GLA4': {'2': {'phi': 67.26, 'psi': -171.66, 'strain': 1.618, 'linkage': '1-3'}, '3': {'phi': 58.87, 'psi': -151.94, 'strain': 1.506, 'linkage': '1-3'}, '4': {'phi': 81.01, 'psi': -88.27, 'strain': 1.349, 'linkage': '1-3'}, '5': {'phi': 58.74, 'psi': -134.69, 'strain': 1.819, 'linkage': '1-3'}, '6': {'phi': 73.06... | {'GAL3-GLA4': {'2': {'phi': 67.26, 'psi': -171.66, 'strain': 1.618, 'linkage': '1-3'}, '3': {'phi': 58.81, 'psi': -151.95, 'strain': 1.506, 'linkage': '1-3'}, '4': {'phi': 81.04, 'psi': -88.25, 'strain': 1.349, 'linkage': '1-3'}, '5': {'phi': 58.66, 'psi': -134.66, 'strain': 1.819, 'linkage': '1-3'}, '6': {'phi': 73.1,... | null | 4 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G57710SU', 'url': 'https://www.glygen.org/glycan/G57710SU'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'};{'taxid': 10090, 'name': 'Mus musculus',... | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Isoglobo series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G00012MO', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G00012... | {'id': '491870200', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491870200', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '4097', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '15855', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+15855', 'database': 'Ca... | 903.47 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(1)Hex(3) % 707.248407805 | freeEnd--?D-Glc--4b1D-Gal,p--3a1D-Gal,p--3b1D-GalNAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000015', 'name': 'a-Gal antigen', 'synonym': 'alpha-Gal antigen'};{'id': 'GGM.000071', 'name': 'Isoglobotetraosylceramide', 'keywords': 'Glycolipid'};{'id': 'GGM.000083', 'name': 'Cytolipin R', 'keywords': 'Glycolipid'} | {'related_accession': 'G04811WK', 'relationship': 'ancestor'};{'related_accession': 'G08590QR', 'relationship': 'ancestor'};{'related_accession': 'G15216HY', 'relationship': 'ancestor'};{'related_accession': 'G29964CE', 'relationship': 'ancestor'};{'related_accession': 'G33233SN', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00011/snfg.svg | ./torsion_data/GS00011_torsion_data.txt | {'Cluster 0': {'count': 13624, '3_2_phi_mean': -76.75, '3_2_psi_mean': 113.26, '4_3_phi_mean': 83.51, '4_3_psi_mean': 126.69, '3_2_phi_std': 16.75, '3_2_psi_std': 37.52, '4_3_phi_std': 13.36, '4_3_psi_std': 26.17}, 'Cluster 1': {'count': 12088, '3_2_phi_mean': -78.09, '3_2_psi_mean': 116.33, '4_3_phi_mean': 80.76, '4_3... | G37525EU | GS00011 | DNeup5Aca2-3DGalpa1-4DGalpb1-4DGlcpa1-OH | DNeup5Aca2-3DGalpa1-4DGalpb1-4DGlcp | Neu5Ac(a2-3)Gal(a1-4)Gal(b1-4)Glc | α-D-Neup5Ac-(2→3)-α-D-Galp-(1→4)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,4,3/[u2122h][a2112h-1b_1-5][a2112h-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a4-b1_b4-c1_c3-d2 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:a-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-acetyl,LIN,1:1o(4+1)2d,2:2o(4+1)3d,3:3o(3+2)4d,4:4d(5+1)5n, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O[C@H]3O[C@H](CO)[C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)[C@H]3O)[C@H](O)[C@H]2O)[C@H]1CO | null | 795.26 | null | Neu5Ac(a2-3) | {'Gal': 2, 'Neu5Ac': 1, 'Glc': 1} | {'Hex': 3, 'Neu5Ac': 1} | 14 | 16 | 24 | 10.722626 | {'Cluster 0': 34.06, 'Cluster 1': 30.22, 'Cluster 2': 12.45, 'Cluster 3': 12.31, 'Cluster 4': 10.96} | {'Cluster 0': 27.5175, 'Cluster 1': 26.4025, 'Cluster 2': 8.135, 'Cluster 3': 7.255, 'Cluster 4': 6.6575, 'Cluster 5': 6.58, 'Cluster 6': 6.265, 'Cluster 7': 2.48, 'Cluster 8': 2.215, 'Cluster 9': 1.605, 'Cluster 10': 1.355, 'Cluster 11': 0.94, 'Cluster 12': 0.8575, 'Cluster 13': 0.695, 'Cluster 14': 0.5725, 'Cluster 1... | {'2': 0.42376110302451864, '3': 0.29754185841183617, '4': 0.27662381608757364, '5': 0.2622343132673724, '6': 0.26087824175966834, '7': 0.2704642991749054, '8': 0.2724786376767135} | {'0': [0, 5, 8, 10, 15], '1': [3, 14], '2': [2, 9, 12], '3': [1, 4, 13], '4': [6, 7, 11]} | {'explained_variance_ratio': [0.15774632224823995, 0.13324674706453693, 0.07505125593922327, 0.055367361342985304, 0.048066599755190856, 0.04014059317445401, 0.03245912593533754, 0.02937684562757932, 0.022001264742014862, 0.020874536097758502], 'cumulative_variance': [0.15774632224823995, 0.2909930693127769, 0.36604432... | 1.5 | AMBER | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpa1-4DGalpb1-4DGlcpa1-OH | Neu5Ac(a2-3)Gal(a1-4)Gal(b1-4)Glc(a1- | α-D-Neup5Ac-(2→3)-α-D-Galp-(1→4)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G31192AQ | WURCS=2.0/4,4,3/[a2122h-1a_1-5][a2112h-1b_1-5][a2112h-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a4-b1_b4-c1_c3-d2 | DNeup5Aca2-3DGalpa1-4DGalpb1-4DGlcpb1-OH | Neu5Ac(a2-3)Gal(a1-4)Gal(b1-4)Glc(b1- | α-D-Neup5Ac-(2→3)-α-D-Galp-(1→4)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G88815RG | WURCS=2.0/4,4,3/[a2122h-1b_1-5][a2112h-1b_1-5][a2112h-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a4-b1_b4-c1_c3-d2 | null | null | null | {'GLC2-GAL3': {'2': {'phi': -80.68, 'psi': 124.59, 'strain': 0.775, 'linkage': '1-4'}, '3': {'phi': -70.49, 'psi': 128.71, 'strain': 0.008, 'linkage': '1-4'}, '4': {'phi': -80.38, 'psi': 136.68, 'strain': 0.987, 'linkage': '1-4'}, '5': {'phi': -68.61, 'psi': 112.42, 'strain': 0.16, 'linkage': '1-4'}, '6': {'phi': -66.2... | {'GLC2-GAL3': {'2': {'phi': -80.68, 'psi': 124.59, 'strain': 0.775, 'linkage': '1-4'}, '3': {'phi': -70.46, 'psi': 128.7, 'strain': 0.008, 'linkage': '1-4'}, '4': {'phi': -80.33, 'psi': 136.64, 'strain': 0.987, 'linkage': '1-4'}, '5': {'phi': -68.62, 'psi': 112.42, 'strain': 0.16, 'linkage': '1-4'}, '6': {'phi': -66.34... | {'GLC2-GAL3': {'2': {'phi': -80.68, 'psi': 124.59, 'strain': 0.775, 'linkage': '1-4'}, '3': {'phi': -70.49, 'psi': 128.71, 'strain': 0.008, 'linkage': '1-4'}, '4': {'phi': -80.38, 'psi': 136.68, 'strain': 0.987, 'linkage': '1-4'}, '5': {'phi': -68.61, 'psi': 112.42, 'strain': 0.16, 'linkage': '1-4'}, '6': {'phi': -66.2... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00012/snfg.svg | ./torsion_data/GS00012_torsion_data.txt | {'Cluster 0': {'count': 16162, '3_2_phi_mean': 87.28, '3_2_psi_mean': -124.63, '3_2_phi_std': 17.22, '3_2_psi_std': 26.01}, 'Cluster 1': {'count': 10609, '3_2_phi_mean': 71.3, '3_2_psi_mean': -143.4, '3_2_phi_std': 11.77, '3_2_psi_std': 13.37}, 'Cluster 2': {'count': 5847, '3_2_phi_mean': 97.51, '3_2_psi_mean': -108.65... | G18712XX | GS00012 | DNeup5Aca2-6DGalpNAca1-3DGlcpNAca1-OH | DNeup5Aca2-6DGalpNAca1-3DGlcpNAc | Neu5Ac(a2-6)GalNAc(a1-3)GlcNAc | α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→3)-D-GlcNAc | WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:a-dgal-HEX-1:5,4s:n-acetyl,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3d(2+1)4n,4:3o(6+2)5d,5:5d(5+1)6n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@H]2O[C@H](CO[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H](O)[C@H](O)[C@H]2NC(C)=O)[C@H](O)[C@H]1CO | null | 715.26 | null | Neu5Ac(a2-6) | {'Neu5Ac': 1, 'GalNAc': 1, 'GlcNAc': 1} | {'HexNAc': 2, 'Neu5Ac': 1} | 1 | 5 | 6 | 9.953737 | {'Cluster 0': 40.41, 'Cluster 1': 26.52, 'Cluster 2': 14.62, 'Cluster 3': 12.53, 'Cluster 4': 5.93} | {'Cluster 0': 30.445, 'Cluster 1': 24.6525, 'Cluster 2': 18.84, 'Cluster 3': 9.76, 'Cluster 4': 3.52, 'Cluster 5': 3.255, 'Cluster 6': 2.61, 'Cluster 7': 2.335, 'Cluster 8': 1.39, 'Cluster 9': 1.0525, 'Cluster 10': 0.95, 'Cluster 11': 0.63, 'Cluster 12': 0.4775, 'Cluster 13': 0.0825} | {'2': 0.43802846729829314, '3': 0.43168473891307074, '4': 0.45643334140423014, '5': 0.3853843908691513, '6': 0.28814897826772934, '7': 0.29404207313112773, '8': 0.3470734904603066} | {'0': [8], '1': [0], '2': [2, 5, 9], '3': [1, 3, 6, 7, 10, 12, 13], '4': [4, 11]} | {'explained_variance_ratio': [0.18303653862101327, 0.09809360600146419, 0.08098267698865445, 0.057904579686617455, 0.04890639028455224, 0.0324673593220714, 0.031907719894417624, 0.030066622659402725, 0.027360951236409033, 0.02070132122685705], 'cumulative_variance': [0.18303653862101327, 0.28113014462247743, 0.36211282... | 2 | AMBER | GLYCAM_06j | 300 | 1 | Neutralising only. | DNeup5Aca2-6DGalpNAca1-3DGlcpNAca1-OH | Neu5Ac(a2-6)GalNAc(a1-3)GlcNAc(a1- | α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→3)-α-D-GlcpNAc-(1→ | G92980RJ | WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2 | DNeup5Aca2-6DGalpNAca1-3DGlcpNAcb1-OH | Neu5Ac(a2-6)GalNAc(a1-3)GlcNAc(b1- | α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→3)-β-D-GlcpNAc-(1→ | G56098KF | WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2 | null | null | null | {'NDG2-A2G3': {'2': {'phi': 74.18, 'psi': -141.15, 'strain': 0.806, 'linkage': '1-3'}, '3': {'phi': 78.24, 'psi': -146.06, 'strain': 0.806, 'linkage': '1-3'}, '4': {'phi': 107.23, 'psi': -115.73, 'strain': 2.778, 'linkage': '1-3'}, '5': {'phi': 70.86, 'psi': 168.66, 'strain': 2.555, 'linkage': '1-3'}, '6': {'phi': 60.5... | {'NDG2-A2G3': {'2': {'phi': 74.18, 'psi': -141.15, 'strain': 0.806, 'linkage': '1-3'}, '3': {'phi': 78.26, 'psi': -146.08, 'strain': 0.806, 'linkage': '1-3'}, '4': {'phi': 107.22, 'psi': -115.7, 'strain': 2.778, 'linkage': '1-3'}, '5': {'phi': 70.83, 'psi': 168.68, 'strain': 2.555, 'linkage': '1-3'}, '6': {'phi': 60.55... | {'NDG2-A2G3': {'2': {'phi': 74.18, 'psi': -141.15, 'strain': 0.806, 'linkage': '1-3'}, '3': {'phi': 78.24, 'psi': -146.06, 'strain': 0.806, 'linkage': '1-3'}, '4': {'phi': 107.23, 'psi': -115.73, 'strain': 2.778, 'linkage': '1-3'}, '5': {'phi': 70.86, 'psi': 168.66, 'strain': 2.555, 'linkage': '1-3'}, '6': {'phi': 60.5... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00013/snfg.svg | ./torsion_data/GS00013_torsion_data.txt | {'Cluster 0': {'count': 10281, '3_2_phi_mean': -69.27, '3_2_psi_mean': 88.47, '3_2_phi_std': 7.72, '3_2_psi_std': 11.99}, 'Cluster 1': {'count': 8539, '3_2_phi_mean': -68.32, '3_2_psi_mean': 87.45, '3_2_phi_std': 6.75, '3_2_psi_std': 11.45}, 'Cluster 2': {'count': 5873, '3_2_phi_mean': -80.37, '3_2_psi_mean': 84.93, '3... | G67189MD | GS00013 | LFucpa1-2DGalpa1-OH | LFucpa1-2DGalp | Fuc(a1-2)Gal | α-L-Fucp-(1→2)-D-Gal | WURCS=2.0/2,2,1/[u2112h][a1221m-1a_1-5]/1-2/a2-b1 | RES,1b:b-dgal-HEX-1:5,2b:a-lgal-HEX-1:5|6:d,LIN,1:1o(2+1)2d, | O1C(O)[C@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@@H](O)[C@@H](O)[C@H]1CO | null | 326.12 | null | Fuc(a1-2) | {'Fuc': 1, 'Gal': 1} | {'Hex': 1, 'dHex': 1} | 3 | 7 | 10 | 8.698426 | {'Cluster 0': 34.27, 'Cluster 1': 28.46, 'Cluster 2': 19.57, 'Cluster 3': 15.7, 'Cluster 4': 2.0} | {'Cluster 0': 63.3803, 'Cluster 1': 15.2385, 'Cluster 2': 9.2791, 'Cluster 3': 5.0962, 'Cluster 4': 2.4931, 'Cluster 5': 1.3799, 'Cluster 6': 1.3032, 'Cluster 7': 0.9099, 'Cluster 8': 0.7233, 'Cluster 9': 0.18, 'Cluster 10': 0.0167} | {'2': 0.4249255382631574, '3': 0.26281268693894266, '4': 0.23031430198374891, '5': 0.2439154464126305, '6': 0.22864265991314695, '7': 0.2322229067041486, '8': 0.218628818204185} | {'0': [7], '1': [1, 5, 6], '2': [2, 3], '3': [4, 10], '4': [0, 8, 9]} | {'explained_variance_ratio': [0.16587853751661044, 0.10072041856418106, 0.07742278111713417, 0.04368083475097823, 0.03869150533182649, 0.03189845139493971, 0.030206164001552363, 0.026288961300730284, 0.025836336613480764, 0.024024996724937804], 'cumulative_variance': [0.16587853751661044, 0.2665989560807915, 0.34402173... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpa1-OH | Fuc(a1-2)Gal(a1- | α-L-Fucp-(1→2)-α-D-Galp-(1→ | G37862DQ | WURCS=2.0/2,2,1/[a2112h-1a_1-5][a1221m-1a_1-5]/1-2/a2-b1 | LFucpa1-2DGalpb1-OH | Fuc(a1-2)Gal(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→ | G00068MO | WURCS=2.0/2,2,1/[a2112h-1b_1-5][a1221m-1a_1-5]/1-2/a2-b1 | null | null | null | {'GAL2-FUC3': {'2': {'phi': -77.33, 'psi': 139.12, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -76.41, 'psi': 152.95, 'strain': 1.347, 'linkage': '1-2'}, '4': {'phi': -58.24, 'psi': 119.89, 'strain': 2.236, 'linkage': '1-2'}, '5': {'phi': -106.06, 'psi': 134.61, 'strain': 2.369, 'linkage': '1-2'}, '6': {'phi': -72... | {'GAL2-FUC3': {'2': {'phi': -77.33, 'psi': 139.12, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -76.4, 'psi': 152.96, 'strain': 1.347, 'linkage': '1-2'}, '4': {'phi': -58.37, 'psi': 120.04, 'strain': 1.886, 'linkage': '1-2'}, '5': {'phi': -106.08, 'psi': 134.62, 'strain': 2.369, 'linkage': '1-2'}, '6': {'phi': -72.... | {'GAL2-FUC3': {'2': {'phi': -77.33, 'psi': 139.12, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -76.41, 'psi': 152.95, 'strain': 1.347, 'linkage': '1-2'}, '4': {'phi': -58.24, 'psi': 119.89, 'strain': 2.236, 'linkage': '1-2'}, '5': {'phi': -106.06, 'psi': 134.61, 'strain': 2.369, 'linkage': '1-2'}, '6': {'phi': -72... | {'taxon_id': '10114', 'taxon_label': 'Rattus', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G67189MD'}]};{'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G67189MD'}]};{'taxon_id'... | 2 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G67189MD', 'url': 'https://glycosmos.org/glycans/show/G67189MD'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'};{'taxid': 9823, 'name': 'Sus scrofa', 'ann... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491859570', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491859570', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '643', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10066', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+10066', 'database': 'Car... | 424.23 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 984 | Saccharide | Hex(1)dHex(1) % 326.12129707 | freeEnd--?D-Gal--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G04537GR', 'relationship': 'ancestor'};{'related_accession': 'G08012BR', 'relationship': 'ancestor'};{'related_accession': 'G08453HV', 'relationship': 'ancestor'};{'related_accession': 'G42494UJ', 'relationship': 'ancestor'};{'related_accession': 'G53862OE', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00014/snfg.svg | ./torsion_data/GS00014_torsion_data.txt | {'Cluster 0': {'count': 13887, '4_2_phi_mean': -69.45, '4_2_psi_mean': 130.79, '3_2_phi_mean': -70.48, '3_2_psi_mean': -97.63, '4_2_phi_std': 8.26, '4_2_psi_std': 6.81, '3_2_phi_std': 9.73, '3_2_psi_std': 7.74}, 'Cluster 1': {'count': 9614, '4_2_phi_mean': -66.48, '4_2_psi_mean': 129.13, '3_2_phi_mean': -69.14, '3_2_ps... | G87205VF | GS00014 | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAca1-OH | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-D-GlcNAc | WURCS=2.0/4,4,3/[u2122h_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:a-lgal-HEX-1:5|6:d,4b:b-dgal-HEX-1:5,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:1o(4+1)4d,4:4o(3+2)5d,5:5d(5+1)6n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@H]1CO | null | 820.3 | {'motif': 'G30207PZ', 'motif_label': 'GM4'} | Fuc(a1-3);Neu5Ac(a2-3) | {'Neu5Ac': 1, 'Gal': 1, 'Fuc': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Ac': 1, 'dHex': 1} | 14 | 15 | 23 | 10.856017 | {'Cluster 0': 34.71, 'Cluster 1': 24.03, 'Cluster 2': 21.65, 'Cluster 3': 16.36, 'Cluster 4': 3.24} | {'Cluster 0': 45.383, 'Cluster 1': 18.5031, 'Cluster 2': 15.2185, 'Cluster 3': 12.2813, 'Cluster 4': 2.4748, 'Cluster 5': 2.1973, 'Cluster 6': 1.3324, 'Cluster 7': 0.8074, 'Cluster 8': 0.5924, 'Cluster 9': 0.48, 'Cluster 10': 0.26, 'Cluster 11': 0.21, 'Cluster 12': 0.105, 'Cluster 13': 0.0675, 'Cluster 14': 0.065, 'Clu... | {'2': 0.3492940814952079, '3': 0.4246905800241308, '4': 0.42414413536420126, '5': 0.3262361058391968, '6': 0.3062112955530023, '7': 0.2624774236698168, '8': 0.260399948139211} | {'0': [1, 3, 10, 12, 14], '1': [5], '2': [0, 9], '3': [2, 4, 8], '4': [6, 7, 11, 13, 15]} | {'explained_variance_ratio': [0.14813452236287625, 0.11339584459059113, 0.08120681880476716, 0.04350134261370679, 0.038561878825415494, 0.03324458162813341, 0.0314877134669693, 0.0267991230577476, 0.024290732465027533, 0.02059740973126309], 'cumulative_variance': [0.14813452236287625, 0.2615303669534674, 0.342737185758... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-α-D-GlcpNAc-(1→ | G07675NG | WURCS=2.0/4,4,3/[a2122h-1a_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2 | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→ | G00054MO | WURCS=2.0/4,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2 | null | null | null | {'NDG2-FUC3': {'2': {'phi': -70.39, 'psi': -98.6, 'strain': -0.0, 'linkage': '1-3'}, '3': {'phi': -74.28, 'psi': -100.9, 'strain': 0.136, 'linkage': '1-3'}, '4': {'phi': -76.48, 'psi': -100.95, 'strain': 0.136, 'linkage': '1-3'}, '5': {'phi': -68.04, 'psi': -100.04, 'strain': 0.087, 'linkage': '1-3'}, '6': {'phi': -72.... | {'NDG2-FUC3': {'2': {'phi': -70.39, 'psi': -98.6, 'strain': -0.0, 'linkage': '1-3'}, '3': {'phi': -74.27, 'psi': -100.9, 'strain': 0.136, 'linkage': '1-3'}, '4': {'phi': -76.45, 'psi': -100.95, 'strain': 0.136, 'linkage': '1-3'}, '5': {'phi': -68.12, 'psi': -99.96, 'strain': 0.094, 'linkage': '1-3'}, '6': {'phi': -72.0... | {'NDG2-FUC3': {'2': {'phi': -70.39, 'psi': -98.6, 'strain': -0.0, 'linkage': '1-3'}, '3': {'phi': -74.28, 'psi': -100.9, 'strain': 0.136, 'linkage': '1-3'}, '4': {'phi': -76.48, 'psi': -100.95, 'strain': 0.136, 'linkage': '1-3'}, '5': {'phi': -68.04, 'psi': -100.04, 'strain': 0.087, 'linkage': '1-3'}, '6': {'phi': -72.... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G87205VF'}]} | 4 | {'taxid': 9031, 'name': 'Gallus gallus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G00054MO', 'url': 'https://www.glygen.org/glycan/G00054MO'}], 'common_name': 'Chicken', 'glygen_name': 'Chicken', 'reference_species': 'Gallus gallus [9031]'};{'taxid': 10029, 'name': 'Cricetul... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491920888', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491920888', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '2279', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '14199', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+14199', 'database': 'Ca... | 1,030.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(1)Hex(1)dHex(1)NeuAc(1) % 820.29608631 | freeEnd--?D-GlcNAc(--3a1L-Fuc,p)--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000022', 'name': 'Sialyl Lewis x', 'synonym': 'SLe^x; SLex; Slex',... | {'related_accession': 'G01010HI', 'relationship': 'ancestor'};{'related_accession': 'G11499FP', 'relationship': 'ancestor'};{'related_accession': 'G13065CP', 'relationship': 'ancestor'};{'related_accession': 'G15602PX', 'relationship': 'ancestor'};{'related_accession': 'G15730NX', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00015/snfg.svg | ./torsion_data/GS00015_torsion_data.txt | {'Cluster 0': {'count': 9420, '3_2_phi_mean': -76.92, '3_2_psi_mean': 104.3, '4_3_phi_mean': -77.78, '4_3_psi_mean': 134.35, '6_4_phi_mean': -67.25, '6_4_psi_mean': -108.27, '5_4_phi_mean': -69.43, '5_4_psi_mean': 141.56, '7_6_phi_mean': -80.65, '7_6_psi_mean': 119.79, '8_7_phi_mean': -67.8, '8_7_psi_mean': 129.28, '9_... | G78126VH | GS00015 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAc[6S]b1-3DGalpb1-4DGlcpa1-OH | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAc[6S]b1-3DGalpb1-4DGlcp | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc6S(b1-3)Gal(b1-4)Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc6S-(1→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/5,8,7/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-5-2-4/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1_g2-h1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4b:a-lgal-HEX-1:5|6:d,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:b-dgal-HEX-1:5,9b:a-lgal-HEX-1:5|6:d,10s:sulfate,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3o(3+1)4d,4:3o(4+1)5d,5:5o(3+1)6d,6:6d(2+1)7n,7:6o(3+1)8d,8:8o(2+1)9d,9:3o(6+1)10n, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O[C@@H]7O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]7O)[C@H]5NC(C)=O)[C@H]4O)[C@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[... | null | 1,444.45 | {'motif': 'G00294TN', 'motif_label': 'Blood group H (type 1)'} | Fuc(a1-3);Fuc(a1-2) | {'Gal': 3, 'Fuc': 2, 'GlcNAc': 1, 'GlcNAc6S': 1, 'Glc': 1} | {'Hex': 4, 'HexNAc': 2, 'dHex': 2, 'S': 1} | 24 | 24 | 42 | 12.675195 | {'Cluster 0': 31.4, 'Cluster 1': 30.99, 'Cluster 2': 28.48, 'Cluster 3': 6.51, 'Cluster 4': 2.62} | {'Cluster 0': 30.5936, 'Cluster 1': 17.3283, 'Cluster 2': 12.1721, 'Cluster 3': 9.0458, 'Cluster 4': 6.4894, 'Cluster 5': 3.9429, 'Cluster 6': 3.7363, 'Cluster 7': 3.3463, 'Cluster 8': 2.4531, 'Cluster 9': 2.1898, 'Cluster 10': 2.0831, 'Cluster 11': 1.4132, 'Cluster 12': 1.0466, 'Cluster 13': 0.9299, 'Cluster 14': 0.73... | {'2': 0.3097213203830425, '3': 0.38918834614021397, '4': 0.36587299304996346, '5': 0.29986610878208064, '6': 0.30588537018528306, '7': 0.29730587602471453, '8': 0.25849009061261985} | {'0': [7, 9, 19], '1': [0, 11, 15, 18, 22], '2': [1, 2, 8, 17, 21], '3': [3, 4, 14, 20], '4': [5, 6, 10, 12, 13, 16, 23]} | {'explained_variance_ratio': [0.1429003594955209, 0.09841309105026054, 0.08438614978948289, 0.06591396825163942, 0.04872758557119814, 0.03882720679710049, 0.029231080836747962, 0.025676580108843484, 0.024297172785077488, 0.021588981590837258], 'cumulative_variance': [0.1429003594955209, 0.24131345054578146, 0.325699600... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAc[6S]b1-3DGalpb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc6S(b1-3)Gal(b1-4)Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc6S-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G18681AO | WURCS=2.0/5,8,7/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-5-2-4/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1_g2-h1 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAc[6S]b1-3DGalpb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc6S(b1-3)Gal(b1-4)Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc6S-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G45448QE | WURCS=2.0/5,8,7/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-5-2-4/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1_g2-h1 | null | null | null | {'GAL8-FUC9': {'2': {'phi': -76.93, 'psi': 149.75, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -69.4, 'psi': 137.61, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -64.62, 'psi': 138.24, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -60.45, 'psi': 145.05, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -106.... | {'GAL8-FUC9': {'2': {'phi': -76.93, 'psi': 149.75, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -69.37, 'psi': 137.57, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -64.56, 'psi': 138.24, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -60.47, 'psi': 145.03, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -106... | {'GAL8-FUC9': {'2': {'phi': -76.93, 'psi': 149.75, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -69.4, 'psi': 137.61, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -64.62, 'psi': 138.24, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -60.45, 'psi': 145.05, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -106.... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00016/snfg.svg | ./torsion_data/GS00016_torsion_data.txt | {'Cluster 0': {'count': 14823, '5_2_phi_mean': -68.8, '5_2_psi_mean': 137.95, '3_2_phi_mean': -70.52, '3_2_psi_mean': -103.43, '5_2_phi_std': 8.57, '5_2_psi_std': 7.47, '3_2_phi_std': 7.83, '3_2_psi_std': 7.96}, 'Cluster 1': {'count': 11789, '5_2_phi_mean': -68.6, '5_2_psi_mean': 138.19, '3_2_phi_mean': -70.1, '3_2_psi... | G16258KS | GS00016 | DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAca1-OH | DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAc | Neu5Ac(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-D-GlcNAc | WURCS=2.0/4,4,3/[u2122h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4/a3-b1_a4-d1_b3-c2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-acetyl,6b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(3+2)4d,4:4d(5+1)5n,5:1o(4+1)6d, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@H]1CO | null | 820.3 | {'motif': 'G30207PZ', 'motif_label': 'GM4'} | Neu5Ac(a2-3);Fuc(a1-4) | {'Neu5Ac': 1, 'Gal': 1, 'Fuc': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Ac': 1, 'dHex': 1} | 14 | 15 | 23 | 9.700045 | {'Cluster 0': 37.05, 'Cluster 1': 29.47, 'Cluster 2': 16.5, 'Cluster 3': 12.5, 'Cluster 4': 4.48} | {'Cluster 0': 36.3114, 'Cluster 1': 25.7049, 'Cluster 2': 13.2237, 'Cluster 3': 8.7966, 'Cluster 4': 4.1421, 'Cluster 5': 3.3747, 'Cluster 6': 3.1972, 'Cluster 7': 2.7647, 'Cluster 8': 1.1549, 'Cluster 9': 0.5924, 'Cluster 10': 0.4025, 'Cluster 11': 0.305, 'Cluster 12': 0.03} | {'2': 0.6217404874501083, '3': 0.5220478404803824, '4': 0.4930397694141001, '5': 0.5706653574815815, '6': 0.5393641161539747, '7': 0.5470492810357924, '8': 0.4846162725383249} | {'0': [0, 5, 6, 7, 10, 12], '1': [3], '2': [1, 9], '3': [4, 8], '4': [2, 11]} | {'explained_variance_ratio': [0.26426632930839605, 0.117480674510002, 0.09138811248240002, 0.04401674350369505, 0.030520704977089665, 0.02683657650192903, 0.023382194473526078, 0.017170904331993957, 0.015767654963353223, 0.014473252873956717], 'cumulative_variance': [0.26426632930839605, 0.38174700381839805, 0.47313511... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-α-D-GlcpNAc-(1→ | G78379MQ | WURCS=2.0/4,4,3/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4/a3-b1_a4-d1_b3-c2 | DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→ | G00053MO | WURCS=2.0/4,4,3/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4/a3-b1_a4-d1_b3-c2 | null | null | null | {'NDG2-GAL3': {'2': {'phi': -68.71, 'psi': -103.3, 'strain': 0.087, 'linkage': '1-3'}, '3': {'phi': -70.24, 'psi': -94.9, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -58.74, 'psi': -130.46, 'strain': 1.634, 'linkage': '1-3'}, '5': {'phi': -69.15, 'psi': -111.03, 'strain': 0.545, 'linkage': '1-3'}, '6': {'phi': -74.... | {'NDG2-GAL3': {'2': {'phi': -68.71, 'psi': -103.3, 'strain': 0.087, 'linkage': '1-3'}, '3': {'phi': -70.23, 'psi': -94.91, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -58.75, 'psi': -130.42, 'strain': 1.634, 'linkage': '1-3'}, '5': {'phi': -69.13, 'psi': -111.04, 'strain': 0.545, 'linkage': '1-3'}, '6': {'phi': -74... | {'NDG2-GAL3': {'2': {'phi': -68.71, 'psi': -103.3, 'strain': 0.087, 'linkage': '1-3'}, '3': {'phi': -70.24, 'psi': -94.9, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -58.74, 'psi': -130.46, 'strain': 1.634, 'linkage': '1-3'}, '5': {'phi': -69.15, 'psi': -111.03, 'strain': 0.545, 'linkage': '1-3'}, '6': {'phi': -74.... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G16258KS'}]} | 4 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G16258KS', 'url': 'https://glycosmos.org/glycans/show/G16258KS'}, {'database': 'Subsumption', 'id': 'G00053MO', 'url': 'https://www.glygen.org/glycan/G00053MO'}], 'common_name': 'Human', 'glygen_name': '... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491879665', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491879665', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '2288', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10643', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+10643', 'database': 'Ca... | 1,030.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(1)Hex(1)dHex(1)NeuAc(1) % 820.29608631 | freeEnd--?D-GlcNAc(--3b1D-Gal,p--3a2D-NeuAc,p)--4a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000020', 'name': 'Lewis a', 'synonym': 'Le^a; Lea', 'keywords': 'Lewis a'};{'id': 'GGM.000024', 'name': 'Sialyl Lewis a', 'synonym': 'CA19-9 antigen; SLe^a; SLea; Slea', 'keywords': 'Lewis a'} | {'related_accession': 'G01010HI', 'relationship': 'ancestor'};{'related_accession': 'G01050MH', 'relationship': 'ancestor'};{'related_accession': 'G11499FP', 'relationship': 'ancestor'};{'related_accession': 'G13065CP', 'relationship': 'ancestor'};{'related_accession': 'G15602PX', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00017/snfg.svg | ./torsion_data/GS00017_torsion_data.txt | {'Cluster 0': {'count': 8449, '3_2_phi_mean': -67.74, '3_2_psi_mean': -129.67, '3_2_phi_std': 8.56, '3_2_psi_std': 10.55}, 'Cluster 1': {'count': 7962, '3_2_phi_mean': -74.49, '3_2_psi_mean': -141.04, '3_2_phi_std': 10.34, '3_2_psi_std': 66.84}, 'Cluster 2': {'count': 7452, '3_2_phi_mean': -81.91, '3_2_psi_mean': -140.... | G00036MO | GS00017 | DGlcpNAcb1-3DGalpNAca1-OH | DGlcpNAcb1-3DGalpNAc | GlcNAc(b1-3)GalNAc | β-D-GlcpNAc-(1→3)-D-GalNAc | WURCS=2.0/2,2,1/[u2112h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2/a3-b1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3d(2+1)4n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO | null | 424.17 | {'motif': 'G00036MO', 'motif_label': 'O-Glycan core 3 fuzzy'} | GlcNAc(b1-3) | {'GlcNAc': 1, 'GalNAc': 1} | {'HexNAc': 2} | 6 | 8 | 11 | 8.848311 | {'Cluster 0': 28.16, 'Cluster 1': 26.54, 'Cluster 2': 24.84, 'Cluster 3': 18.85, 'Cluster 4': 1.61} | {'Cluster 0': 63.9769, 'Cluster 1': 22.4978, 'Cluster 2': 7.8492, 'Cluster 3': 4.1429, 'Cluster 4': 0.8532, 'Cluster 5': 0.3566, 'Cluster 6': 0.1367, 'Cluster 7': 0.13, 'Cluster 8': 0.0267, 'Cluster 9': 0.02, 'Cluster 10': 0.01} | {'2': 0.6452836918703982, '3': 0.38981828169754806, '4': 0.32187518788654934, '5': 0.2902550243870313, '6': 0.3136616577138442, '7': 0.305107587253854, '8': 0.2887219109682379} | {'0': [4, 9], '1': [], '2': [3, 8], '3': [1, 2, 5, 6, 7, 10], '4': [0]} | {'explained_variance_ratio': [0.16540996316848916, 0.11614204686092117, 0.07093469477726369, 0.05492089366090544, 0.050759593431145764, 0.034793207389465224, 0.029832436720629584, 0.02744648405373285, 0.026696723659310237, 0.025512874349375908], 'cumulative_variance': [0.16540996316848916, 0.2815520100294103, 0.3524867... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | DGlcpNAcb1-3DGalpNAca1-OH | GlcNAc(b1-3)GalNAc(a1- | β-D-GlcpNAc-(1→3)-α-D-GalpNAc-(1→ | G00035MO | WURCS=2.0/2,2,1/[a2112h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2/a3-b1 | DGlcpNAcb1-3DGalpNAcb1-OH | GlcNAc(b1-3)GalNAc(b1- | β-D-GlcpNAc-(1→3)-β-D-GalpNAc-(1→ | G75113PZ | WURCS=2.0/2,2,1/[a2112h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2/a3-b1 | null | null | null | {'A2G2-NAG3': {'2': {'phi': -62.1, 'psi': -137.89, 'strain': 0.758, 'linkage': '1-3'}, '3': {'phi': -68.46, 'psi': -162.35, 'strain': 1.719, 'linkage': '1-3'}, '4': {'phi': -68.57, 'psi': -162.83, 'strain': 1.719, 'linkage': '1-3'}, '5': {'phi': -63.73, 'psi': -114.19, 'strain': 0.545, 'linkage': '1-3'}, '6': {'phi': -... | {'A2G2-NAG3': {'2': {'phi': -62.1, 'psi': -137.89, 'strain': 0.758, 'linkage': '1-3'}, '3': {'phi': -68.44, 'psi': -162.33, 'strain': 1.719, 'linkage': '1-3'}, '4': {'phi': -68.51, 'psi': -162.81, 'strain': 1.719, 'linkage': '1-3'}, '5': {'phi': -63.73, 'psi': -114.15, 'strain': 0.545, 'linkage': '1-3'}, '6': {'phi': -... | {'A2G2-NAG3': {'2': {'phi': -62.1, 'psi': -137.89, 'strain': 0.758, 'linkage': '1-3'}, '3': {'phi': -68.46, 'psi': -162.35, 'strain': 1.719, 'linkage': '1-3'}, '4': {'phi': -68.57, 'psi': -162.83, 'strain': 1.719, 'linkage': '1-3'}, '5': {'phi': -63.73, 'psi': -114.19, 'strain': 0.545, 'linkage': '1-3'}, '6': {'phi': -... | {'taxon_id': '470', 'taxon_label': 'Acinetobacter baumannii', 'evidence': [{'label': 'GlyTouCan(bcsdb)', 'id': 'glytoucan.org/Structures/Glycans/G00036MO'}]};{'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G00036MO'}]} | 2 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G00035MO', 'url': 'https://www.glygen.org/glycan/G00035MO'}, {'database': 'Subsumption', 'id': 'G85714GY', 'url': 'https://www.glygen.org/glycan/G85714GY'}], 'common_name': 'Bovine', 'glygen_name'... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 3'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G00036MO', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491870181', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491870181', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '12817', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '29072', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+29072', 'database': 'C... | 536.29 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 984 | Saccharide | HexNAc(2) % 424.16930991 | freeEnd--?D-GalNAc--3b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G27391WQ', 'relationship': 'ancestor'};{'related_accession': 'G68646SF', 'relationship': 'ancestor'};{'related_accession': 'G73862MD', 'relationship': 'ancestor'};{'related_accession': 'G94131HY', 'relationship': 'ancestor'};{'related_accession': 'G27391WQ', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00018/snfg.svg | ./torsion_data/GS00018_torsion_data.txt | {'Cluster 0': {'count': 20897, '5_2_phi_mean': -75.7, '5_2_psi_mean': -42.97, '3_2_phi_mean': -76.29, '3_2_psi_mean': -123.58, '7_5_phi_mean': -67.06, '7_5_psi_mean': -108.42, '6_5_phi_mean': -68.88, '6_5_psi_mean': 142.03, '5_2_phi_std': 25.14, '5_2_psi_std': 154.31, '3_2_phi_std': 17.09, '3_2_psi_std': 34.77, '7_5_ph... | G33772BZ | GS00018 | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3]DGalpNAca1-OH | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3]DGalpNAc | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)]GalNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/5,7,6/[u2112h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-5-2-3/a3-b1_a6-d1_b3-c2_d3-e1_d4-f1_f3-g2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-acetyl,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:a-lgal-HEX-1:5|6:d,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(3+2)4d,4:4d(5+1)5n,5:1o(6+1)6d,6:6d(2+1)7n,7:6o(3+1)8d,8:6o(4+1... | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)[C@H]3O)[C@H](O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](... | null | 1,476.52 | {'motif': 'G00034MO', 'motif_label': 'O-Glycan core 2 fuzzy'};{'motif': 'G00054MO', 'motif_label': 'Slex'};{'motif': 'G00054MO', 'motif_label': 'Sialyl Lewis x'} | Fuc(a1-3);Neu5Ac(a2-3) | {'Neu5Ac': 2, 'Gal': 2, 'Fuc': 1, 'GlcNAc': 1, 'GalNAc': 1} | {'Hex': 2, 'HexNAc': 2, 'Neu5Ac': 2, 'dHex': 1} | 28 | 26 | 41 | 13.126387 | {'Cluster 0': 26.12, 'Cluster 1': 24.58, 'Cluster 2': 17.69, 'Cluster 3': 17.11, 'Cluster 4': 14.51} | {'Cluster 0': 22.319, 'Cluster 1': 12.835, 'Cluster 2': 9.4453, 'Cluster 3': 6.0006, 'Cluster 4': 5.9982, 'Cluster 5': 5.6707, 'Cluster 6': 5.4195, 'Cluster 7': 5.052, 'Cluster 8': 4.5895, 'Cluster 9': 4.0008, 'Cluster 10': 3.5459, 'Cluster 11': 3.2147, 'Cluster 12': 2.956, 'Cluster 13': 2.506, 'Cluster 14': 1.3699, 'C... | {'2': 0.4199192679145849, '3': 0.2942797140759499, '4': 0.2785231360258963, '5': 0.2716977446239686, '6': 0.24921385375509317, '7': 0.2394875677711779, '8': 0.24995661633692903} | {'0': [1, 10, 13, 19, 20, 22], '1': [2, 3, 9, 11, 16, 17], '2': [4, 5, 12, 15, 18, 24, 25], '3': [0, 7, 14, 23], '4': [6, 8, 21]} | {'explained_variance_ratio': [0.2573747203484764, 0.08510401195270509, 0.06042040354367336, 0.044416621372801654, 0.04023997678404126, 0.035425992865449674, 0.03453389571844358, 0.026212076062069878, 0.021070380189349147, 0.015553755299044129], 'cumulative_variance': [0.2573747203484764, 0.34247873230118153, 0.40289913... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3]DGalpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)]GalNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G97345NY | WURCS=2.0/5,7,6/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-5-2-3/a3-b1_a6-d1_b3-c2_d3-e1_d4-f1_f3-g2 | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3]DGalpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)]GalNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G25322NY | WURCS=2.0/5,7,6/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-5-2-3/a3-b1_a6-d1_b3-c2_d3-e1_d4-f1_f3-g2 | null | null | null | {'A2G2-GAL3': {'2': {'phi': -72.31, 'psi': -112.93, 'strain': 0.704, 'linkage': '1-3'}, '3': {'phi': -65.83, 'psi': -111.04, 'strain': 0.545, 'linkage': '1-3'}, '4': {'phi': -80.88, 'psi': -161.47, 'strain': 1.064, 'linkage': '1-3'}, '5': {'phi': -78.75, 'psi': -174.37, 'strain': 2.072, 'linkage': '1-3'}, '6': {'phi': ... | {'A2G2-GAL3': {'2': {'phi': -72.31, 'psi': -112.93, 'strain': 0.704, 'linkage': '1-3'}, '3': {'phi': -65.85, 'psi': -111.0, 'strain': 0.545, 'linkage': '1-3'}, '4': {'phi': -80.8, 'psi': -161.46, 'strain': 1.064, 'linkage': '1-3'}, '5': {'phi': -78.73, 'psi': -174.37, 'strain': 2.072, 'linkage': '1-3'}, '6': {'phi': -6... | {'A2G2-GAL3': {'2': {'phi': -72.31, 'psi': -112.93, 'strain': 0.704, 'linkage': '1-3'}, '3': {'phi': -65.83, 'psi': -111.04, 'strain': 0.545, 'linkage': '1-3'}, '4': {'phi': -80.88, 'psi': -161.47, 'strain': 1.064, 'linkage': '1-3'}, '5': {'phi': -78.75, 'psi': -174.37, 'strain': 2.072, 'linkage': '1-3'}, '6': {'phi': ... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00019/snfg.svg | ./torsion_data/GS00019_torsion_data.txt | {'Cluster 0': {'count': 23782, '3_2_phi_mean': -79.07, '3_2_psi_mean': 101.1, '4_3_phi_mean': -74.97, '4_3_psi_mean': -121.23, '9_4_phi_mean': 73.7, '9_4_psi_mean': 80.94, '5_4_phi_mean': 72.7, '5_4_psi_mean': 128.97, '6_5_phi_mean': -79.94, '6_5_psi_mean': -85.77, '7_6_phi_mean': -75.0, '7_6_psi_mean': -118.23, '10_9_... | G23023HU | GS00019 | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,9,8/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3-4-2-5-6-4-2/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-glycolyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(=O)CO)[C@H]([C@H](O)[C@H... | null | 1,785.63 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | GlcNAc(b1-2);Neu5Gc(a2-6) | {'GlcNAc': 4, 'Man': 3, 'Neu5Gc': 1, 'Gal': 1} | {'Hex': 4, 'HexNAc': 4, 'Neu5Gc': 1} | 1 | 5 | 6 | 13.578371 | {'Cluster 0': 29.72, 'Cluster 1': 24.68, 'Cluster 2': 18.22, 'Cluster 3': 17.02, 'Cluster 4': 10.36} | {'Cluster 0': 19.6043, 'Cluster 1': 14.1273, 'Cluster 2': 9.9228, 'Cluster 3': 7.9567, 'Cluster 4': 7.063, 'Cluster 5': 6.3331, 'Cluster 6': 3.3759, 'Cluster 7': 3.3072, 'Cluster 8': 3.2984, 'Cluster 9': 2.9097, 'Cluster 10': 2.8235, 'Cluster 11': 2.3085, 'Cluster 12': 1.9048, 'Cluster 13': 1.7273, 'Cluster 14': 1.6811... | {'2': 0.43158670921810566, '3': 0.3588668879014211, '4': 0.3325790721785507, '5': 0.303202285345029, '6': 0.29323713091414066, '7': 0.24061436524995045, '8': 0.24991580708883745} | {'0': [2, 4, 9, 13, 15, 26, 27], '1': [7, 14, 16], '2': [5, 6, 11, 19, 21, 25], '3': [1, 3, 8, 12, 20, 22], '4': [0, 10, 17, 18, 23, 24]} | {'explained_variance_ratio': [0.21062201203287406, 0.08399851794237596, 0.07812276284223975, 0.0624928098734692, 0.04590484636940545, 0.03587936497773684, 0.02572732836264793, 0.024457574330042944, 0.02128763926594429, 0.018215600215338048], 'cumulative_variance': [0.21062201203287406, 0.29462052997525, 0.3727432928174... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G93053DY | WURCS=2.0/6,9,8/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3-4-2-5-6-4-2/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1 | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G30370YC | WURCS=2.0/5,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-1-2-3-1-4-5-3-1/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1 | null | null | Biantennary N-Glycan;Complex N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -83.95, 'psi': -67.08, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -71.31, 'psi': -98.3, 'strain': 0.971, 'linkage': '1-2'}, '4': {'phi': -92.53, 'psi': -73.13, 'strain': 0.326, 'linkage': '1-2'}, '5': {'phi': -66.15, 'psi': -102.06, 'strain': 1.809, 'linkage': '1-2'}, '6': {'phi': -88.3... | {'MAN5-NAG6': {'2': {'phi': -83.95, 'psi': -67.08, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -71.26, 'psi': -98.27, 'strain': 0.971, 'linkage': '1-2'}, '4': {'phi': -92.52, 'psi': -73.13, 'strain': 0.326, 'linkage': '1-2'}, '5': {'phi': -66.12, 'psi': -102.07, 'strain': 1.809, 'linkage': '1-2'}, '6': {'phi': -88.... | {'MAN5-NAG6': {'2': {'phi': -83.95, 'psi': -67.08, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -71.31, 'psi': -98.3, 'strain': 0.971, 'linkage': '1-2'}, '4': {'phi': -92.53, 'psi': -73.13, 'strain': 0.326, 'linkage': '1-2'}, '5': {'phi': -66.15, 'psi': -102.06, 'strain': 1.809, 'linkage': '1-2'}, '6': {'phi': -88.3... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00020/snfg.svg | ./torsion_data/GS00020_torsion_data.txt | {'Cluster 0': {'count': 13659, '15_2_phi_mean': -77.81, '15_2_psi_mean': 51.21, '3_2_phi_mean': -77.84, '3_2_psi_mean': 104.84, '4_3_phi_mean': -79.52, '4_3_psi_mean': -124.23, '10_4_phi_mean': 75.46, '10_4_psi_mean': 88.6, '5_4_phi_mean': 73.36, '5_4_psi_mean': 128.48, '8_5_phi_mean': -79.43, '8_5_psi_mean': 108.07, '... | G56655CC | GS00020 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,14,13/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-5-4-2-5-2-5-6/a4-b1_a6-n1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i6-l1_j4-k1_l4-m1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dgal-HEX-1:5,13b:a-dman-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dgal-HEX-1:5,17b:b-dglc-HEX-1:5,18s:n-acetyl,19b:b-dgal-HEX-1:5,... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | FA4G4 | 2,516.91 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Gal(b1-4);Fuc(a1-6) | {'GlcNAc': 6, 'Gal': 4, 'Man': 3, 'Fuc': 1} | {'Hex': 7, 'HexNAc': 6, 'dHex': 1} | 45 | 43 | 70 | 13.958782 | {'Cluster 0': 30.35, 'Cluster 1': 20.2, 'Cluster 2': 19.1, 'Cluster 3': 18.41, 'Cluster 4': 11.94} | {'Cluster 0': 20.5933, 'Cluster 1': 12.4467, 'Cluster 2': 7.1156, 'Cluster 3': 5.5867, 'Cluster 4': 5.4644, 'Cluster 5': 5.4533, 'Cluster 6': 5.4356, 'Cluster 7': 3.5578, 'Cluster 8': 3.1244, 'Cluster 9': 2.7933, 'Cluster 10': 2.7067, 'Cluster 11': 2.6711, 'Cluster 12': 2.5511, 'Cluster 13': 2.4867, 'Cluster 14': 2.1, ... | {'2': 0.39738094422744374, '3': 0.2679894241403081, '4': 0.2975835216701877, '5': 0.309813737849976, '6': 0.3626162347127756, '7': 0.3218820939373385, '8': 0.3549909477610893} | {'0': [2, 6, 12, 13, 17, 18, 22, 24, 27], '1': [0, 19, 25], '2': [4, 9, 23, 28, 30], '3': [3, 5, 8, 11, 15, 20, 21, 29], '4': [1, 7, 10, 14, 16, 26]} | {'explained_variance_ratio': [0.14681127085811327, 0.0868858762163066, 0.07658002649910173, 0.059381662037274914, 0.047575098530208734, 0.04490910510854172, 0.038983806811740164, 0.03567959260456092, 0.03149337836670003, 0.027382278135810956], 'cumulative_variance': [0.14681127085811327, 0.23369714707441985, 0.31027717... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G08467JA | WURCS=2.0/6,14,13/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-5-4-2-5-2-5-6/a4-b1_a6-n1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i6-l1_j4-k1_l4-m1 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G63889NK | WURCS=2.0/5,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-1-4-3-1-4-1-4-5/a4-b1_a6-n1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i6-l1_j4-k1_l4-m1 | FA4G4 | null | Fucosylated N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -79.78, 'psi': -83.69, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -102.13, 'psi': -72.66, 'strain': 0.927, 'linkage': '1-2'}, '4': {'phi': -79.03, 'psi': -65.93, 'strain': 0.515, 'linkage': '1-2'}, '5': {'phi': -111.81, 'psi': -107.67, 'strain': 2.783, 'linkage': '1-2'}, '6': {'phi': -... | {'MAN5-NAG6': {'2': {'phi': -79.78, 'psi': -83.69, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -102.14, 'psi': -72.65, 'strain': 0.927, 'linkage': '1-2'}, '4': {'phi': -79.0, 'psi': -65.91, 'strain': 0.515, 'linkage': '1-2'}, '5': {'phi': -111.74, 'psi': -107.71, 'strain': 2.783, 'linkage': '1-2'}, '6': {'phi': -7... | {'MAN5-NAG6': {'2': {'phi': -79.78, 'psi': -83.69, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -102.13, 'psi': -72.66, 'strain': 0.927, 'linkage': '1-2'}, '4': {'phi': -79.03, 'psi': -65.93, 'strain': 0.515, 'linkage': '1-2'}, '5': {'phi': -111.81, 'psi': -107.67, 'strain': 2.783, 'linkage': '1-2'}, '6': {'phi': -... | {'taxon_id': '10029', 'taxon_label': 'Cricetulus griseus (Chinese hamster)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G56655CC'}]};{'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Struct... | 14 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G56655CC', 'url': 'https://glycosmos.org/glycans/show/G56655CC'}, {'database': 'Subsumption', 'id': 'G62968IF', 'url': 'https://www.glygen.org/glycan/G62968IF'}], 'common_name': 'Bovine', 'glygen_name': 'B... | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G56655CC', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491856316', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491856316', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '719', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '13830', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+13830', 'database': 'Car... | 3,119.59 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 140 | Saccharide | HexNAc(6)Hex(7)dHex(1) % 2516.9144737 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G41686EZ', 'relationship': 'ancestor'};{'related_accession': 'G43386RH', 'relationship': 'ancestor'};{'related_accession': 'G49739MP', 'relationship': 'ancestor'};{'related_accession': 'G58242XJ', 'relationship': 'ancestor'};{'related_accession': 'G80479JV', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00021/snfg.svg | ./torsion_data/GS00021_torsion_data.txt | {'Cluster 0': {'count': 14433, '3_2_phi_mean': -78.87, '3_2_psi_mean': 103.18, '4_3_phi_mean': -75.88, '4_3_psi_mean': -120.91, '8_4_phi_mean': 74.86, '8_4_psi_mean': -108.93, '5_4_phi_mean': 70.19, '5_4_psi_mean': 121.25, '6_5_phi_mean': -81.0, '6_5_psi_mean': -91.86, '7_6_phi_mean': -78.86, '7_6_psi_mean': -122.91, '... | G45712YX | GS00021 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-4-2-6-5-2-5-7/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h3-i1_h4-j1_k4-l1_l3-m2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:a-lgal-HEX-1:5|6:d,14b:b-dgal-HEX-1:5,15b:b-dglc-HEX-1:5,16s:n-acetyl,17b:b-dgal-HEX-1:5,18b:a-dgro-dgal-NON-2:6|1:a|... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[... | null | 2,442.88 | null | Fuc(a1-3);Gal(b1-4);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 1 | 5 | 6 | 14.138353 | {'Cluster 0': 32.07, 'Cluster 1': 24.02, 'Cluster 2': 16.52, 'Cluster 3': 14.61, 'Cluster 4': 12.78} | {'Cluster 0': 21.7778, 'Cluster 1': 9.8356, 'Cluster 2': 8.2422, 'Cluster 3': 5.7533, 'Cluster 4': 4.8133, 'Cluster 5': 4.3111, 'Cluster 6': 4.14, 'Cluster 7': 4.0422, 'Cluster 8': 3.5111, 'Cluster 9': 3.42, 'Cluster 10': 3.36, 'Cluster 11': 2.9444, 'Cluster 12': 2.7711, 'Cluster 13': 2.3533, 'Cluster 14': 2.0422, 'Clu... | {'2': 0.42509673263750575, '3': 0.3460704963790584, '4': 0.3243832805494727, '5': 0.35765163876551553, '6': 0.3806058315795488, '7': 0.3337707559190212, '8': 0.2928537670199173} | {'0': [2, 6, 14, 17, 21, 28], '1': [0, 12, 19, 30, 31], '2': [1, 4, 7, 9, 11, 13, 15, 16, 18, 20, 23, 24, 26, 29], '3': [3, 8, 22, 27], '4': [5, 10, 25]} | {'explained_variance_ratio': [0.22480048572723707, 0.0911131206768693, 0.07109136677089829, 0.05267336583582395, 0.044076380106706795, 0.03928157745031412, 0.03549520324460974, 0.030017194714689763, 0.02247345595113145, 0.0217084209480531], 'cumulative_variance': [0.22480048572723707, 0.3159136064041064, 0.387004973175... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G46385MK | WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-4-2-6-5-2-5-7/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h3-i1_h4-j1_k4-l1_l3-m2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G82365EV | WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-3-1-5-4-1-4-6/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h3-i1_h4-j1_k4-l1_l3-m2 | null | null | Biantennary N-Glycan;Complex N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -100.23, 'psi': -86.37, 'strain': 1.301, 'linkage': '1-2'}, '3': {'phi': -79.85, 'psi': -51.63, 'strain': 1.265, 'linkage': '1-2'}, '4': {'phi': -74.54, 'psi': -71.24, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -100.95, 'psi': -70.82, 'strain': 0.927, 'linkage': '1-2'}, '6': {'phi': -1... | {'MAN5-NAG6': {'2': {'phi': -100.23, 'psi': -86.37, 'strain': 1.301, 'linkage': '1-2'}, '3': {'phi': -79.88, 'psi': -51.61, 'strain': 1.265, 'linkage': '1-2'}, '4': {'phi': -74.5, 'psi': -71.25, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -100.93, 'psi': -70.78, 'strain': 0.927, 'linkage': '1-2'}, '6': {'phi': -10... | {'MAN5-NAG6': {'2': {'phi': -100.23, 'psi': -86.37, 'strain': 1.301, 'linkage': '1-2'}, '3': {'phi': -79.85, 'psi': -51.63, 'strain': 1.265, 'linkage': '1-2'}, '4': {'phi': -74.54, 'psi': -71.24, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -100.95, 'psi': -70.82, 'strain': 0.927, 'linkage': '1-2'}, '6': {'phi': -1... | null | 13 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G45712YX', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G45712YX', 'url': 'https://glytoucan.org/Structures/Glycans/G45712YX', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G45712YX', 'url': 'https://sandbox.glyomics.org/explore.html?G45712YX', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G45712YX', 'url': 'https://gnome.glyom... | 3,031.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 151 | Saccharide | HexNAc(5)Hex(6)dHex(1)NeuAc(1) % 2442.87769423 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-ac... | {'related_accession': 'G17168EK', 'relationship': 'ancestor'};{'related_accession': 'G44930VK', 'relationship': 'ancestor'};{'related_accession': 'G54456ZM', 'relationship': 'ancestor'};{'related_accession': 'G79666IR', 'relationship': 'ancestor'};{'related_accession': 'G86752LQ', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00022/snfg.svg | ./torsion_data/GS00022_torsion_data.txt | {'Cluster 0': {'count': 2581, '3_2_phi_mean': -79.86, '3_2_psi_mean': 98.66, '4_3_phi_mean': -80.1, '4_3_psi_mean': -119.67, '8_4_phi_mean': 77.0, '8_4_psi_mean': 81.37, '5_4_phi_mean': 72.94, '5_4_psi_mean': 128.91, '6_5_phi_mean': -78.82, '6_5_psi_mean': -85.39, '7_6_phi_mean': -74.03, '7_6_psi_mean': -117.26, '11_8_... | G58611PK | GS00022 | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-4-2-5-2-6-5-7/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j3-k1_j4-l1_l3-m2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:a-lgal-HEX-1:5|6:d,17b:b-dgal-HEX-1:5,18b:a-dgro-dgal-NON-2:6|1:a|... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H]6O)[C@H](O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O... | null | 2,442.88 | null | Fuc(a1-3);Gal(b1-4);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 1 | 5 | 6 | 14.023429 | {'Cluster 0': 28.68, 'Cluster 1': 26.33, 'Cluster 2': 24.76, 'Cluster 3': 14.13, 'Cluster 4': 6.1} | {'Cluster 0': 18.3889, 'Cluster 1': 7.9444, 'Cluster 2': 6.2667, 'Cluster 3': 6.2333, 'Cluster 4': 5.9, 'Cluster 5': 5.7778, 'Cluster 6': 4.8444, 'Cluster 7': 4.6444, 'Cluster 8': 4.4778, 'Cluster 9': 4.3667, 'Cluster 10': 3.6556, 'Cluster 11': 3.5111, 'Cluster 12': 2.8556, 'Cluster 13': 2.7778, 'Cluster 14': 2.7333, '... | {'2': 0.41178854415966015, '3': 0.3686875502423493, '4': 0.34387381987246485, '5': 0.34307863037031255, '6': 0.3573993083733689, '7': 0.33162898429257576, '8': 0.33580919949906907} | {'0': [6, 7, 11, 12, 15, 17, 18, 21, 27], '1': [5, 10, 16, 24, 28, 30], '2': [0, 8, 22, 29], '3': [2, 4, 14, 23, 25], '4': [1, 3, 9, 13, 19, 20, 26]} | {'explained_variance_ratio': [0.22663761617429684, 0.11086596560292429, 0.07352947159692062, 0.04332588441188757, 0.04110508854887744, 0.036780625351956024, 0.02976816951965241, 0.02722746293770975, 0.01991291259340871, 0.018435396499221678], 'cumulative_variance': [0.22663761617429684, 0.3375035817772211, 0.4110330533... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G38887NC | WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-4-2-5-2-6-5-7/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j3-k1_j4-l1_l3-m2 | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G11541AS | WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-3-1-4-1-5-4-6/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j3-k1_j4-l1_l3-m2 | null | null | Biantennary N-Glycan;Complex N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -80.32, 'psi': -71.26, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -91.08, 'psi': -89.18, 'strain': 0.71, 'linkage': '1-2'}, '4': {'phi': -69.61, 'psi': -63.64, 'strain': 0.982, 'linkage': '1-2'}, '5': {'phi': -74.15, 'psi': -86.34, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -73.53... | {'MAN5-NAG6': {'2': {'phi': -80.32, 'psi': -71.26, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -91.04, 'psi': -89.2, 'strain': 0.71, 'linkage': '1-2'}, '4': {'phi': -69.65, 'psi': -63.58, 'strain': 0.982, 'linkage': '1-2'}, '5': {'phi': -74.15, 'psi': -86.34, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -73.5, ... | {'MAN5-NAG6': {'2': {'phi': -80.32, 'psi': -71.26, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -91.08, 'psi': -89.18, 'strain': 0.71, 'linkage': '1-2'}, '4': {'phi': -69.61, 'psi': -63.64, 'strain': 0.982, 'linkage': '1-2'}, '5': {'phi': -74.15, 'psi': -86.34, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -73.53... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00023/snfg.svg | ./torsion_data/GS00023_torsion_data.txt | {'Cluster 0': {'count': 3769, '3_2_phi_mean': -80.26, '3_2_psi_mean': 96.41, '4_3_phi_mean': -84.47, '4_3_psi_mean': -126.28, '9_4_phi_mean': 77.17, '9_4_psi_mean': 89.82, '5_4_phi_mean': 72.75, '5_4_psi_mean': 128.41, '6_5_phi_mean': -81.34, '6_5_psi_mean': -84.84, '7_6_phi_mean': -68.07, '7_6_psi_mean': -108.09, '8_6... | G91344HC | GS00023 | DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-4-2-6-2-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-k1_i4-j1_k4-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-dman-HEX-1:5,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:b-dgal-HEX-1:5,15b:b-dglc-HEX-1:5,16s:n-acetyl,17b:b-dgal-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(4+1)3d,... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | null | 2,151.78 | null | Fuc(a1-3);Gal(b1-4) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'dHex': 1} | 1 | 5 | 6 | 13.806321 | {'Cluster 0': 41.88, 'Cluster 1': 22.44, 'Cluster 2': 16.7, 'Cluster 3': 10.61, 'Cluster 4': 8.37} | {'Cluster 0': 15.1778, 'Cluster 1': 10.3667, 'Cluster 2': 8.1667, 'Cluster 3': 8.0222, 'Cluster 4': 7.5, 'Cluster 5': 6.2889, 'Cluster 6': 5.4556, 'Cluster 7': 5.4111, 'Cluster 8': 5.4, 'Cluster 9': 3.9111, 'Cluster 10': 3.2222, 'Cluster 11': 2.1889, 'Cluster 12': 2.0111, 'Cluster 13': 1.9, 'Cluster 14': 1.8333, 'Clust... | {'2': 0.32283863519202055, '3': 0.3709727431046931, '4': 0.38133546410090313, '5': 0.3338467794460655, '6': 0.31934364569424895, '7': 0.2866320795541753, '8': 0.2622614059656464} | {'0': [1, 2, 7, 9, 11, 12, 16, 19, 22, 23, 25, 28], '1': [3, 6, 15, 17, 18, 27], '2': [5, 14, 24], '3': [4, 10, 21, 26, 29], '4': [0, 8, 13, 20]} | {'explained_variance_ratio': [0.14278512113537348, 0.0909654269912709, 0.08476843389673007, 0.07510908453000723, 0.06287860359594666, 0.049213942197089154, 0.035761550450435706, 0.027532286185004563, 0.02406134320390797, 0.022113477530640753], 'cumulative_variance': [0.14278512113537348, 0.23375054812664436, 0.31851898... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G52605PN | WURCS=2.0/6,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-4-2-6-2-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-k1_i4-j1_k4-l1 | DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G44634YI | WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-3-1-5-1-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-k1_i4-j1_k4-l1 | null | null | N-Glycan | {'MAN5-NAG6': {'2': {'phi': -89.03, 'psi': -72.22, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -97.29, 'psi': -57.57, 'strain': 1.667, 'linkage': '1-2'}, '4': {'phi': -75.98, 'psi': -77.72, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -74.47, 'psi': -83.11, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -102.... | {'MAN5-NAG6': {'2': {'phi': -89.03, 'psi': -72.22, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -97.31, 'psi': -57.52, 'strain': 1.667, 'linkage': '1-2'}, '4': {'phi': -76.05, 'psi': -77.67, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -74.5, 'psi': -83.14, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -102.7... | {'MAN5-NAG6': {'2': {'phi': -89.03, 'psi': -72.22, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -97.29, 'psi': -57.57, 'strain': 1.667, 'linkage': '1-2'}, '4': {'phi': -75.98, 'psi': -77.72, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -74.47, 'psi': -83.11, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -102.... | null | 12 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G91344HC', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': 'G91344HC', 'url': 'https://glytoucan.org/Structures/Glycans/G91344HC', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G91344HC', 'url': 'https://sandbox.glyomics.org/explore.html?G91344HC', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G91344HC', 'url': 'https://gnome.glyom... | 2,670.36 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 164 | Saccharide | HexNAc(5)Hex(6)dHex(1) % 2151.78227759 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G15715XI', 'relationship': 'ancestor'};{'related_accession': 'G44211QA', 'relationship': 'ancestor'};{'related_accession': 'G70441OD', 'relationship': 'ancestor'};{'related_accession': 'G79284PO', 'relationship': 'ancestor'};{'related_accession': 'G44211QA', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00024/snfg.svg | ./torsion_data/GS00024_torsion_data.txt | {'Cluster 0': {'count': 3015, '15_2_phi_mean': -78.45, '15_2_psi_mean': 51.66, '3_2_phi_mean': -77.39, '3_2_psi_mean': 109.5, '4_3_phi_mean': -77.5, '4_3_psi_mean': -118.37, '10_4_phi_mean': 74.78, '10_4_psi_mean': 59.45, '5_4_phi_mean': 71.4, '5_4_psi_mean': 129.98, '6_5_phi_mean': -81.2, '6_5_psi_mean': -87.25, '7_6_... | G16476DW | GS00024 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,14,13/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-7-4-2-6-2-6-5/a4-b1_a6-n1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g3-h2_i2-j1_i6-l1_j4-k1_l4-m1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,12s:n-acetyl,13b:a-dman-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dgal-HEX-1:5,17b:b-dglc-HEX-1:5,18s:n-ac... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | null | 2,588.94 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00054MO', 'motif_label': 'Slex'};{'motif': 'G00054MO', 'motif_label': 'Sialyl Lewis x'} | Fuc(a1-3);Gal(b1-4);Fuc(a1-6);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Fuc': 2, 'Neu5Ac': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 2} | 47 | 44 | 72 | 14.447265 | {'Cluster 0': 37.69, 'Cluster 1': 20.99, 'Cluster 2': 18.86, 'Cluster 3': 15.03, 'Cluster 4': 7.44} | {'Cluster 0': 14.475, 'Cluster 1': 11.275, 'Cluster 2': 10.7375, 'Cluster 3': 8.75, 'Cluster 4': 6.25, 'Cluster 5': 5.575, 'Cluster 6': 5.3875, 'Cluster 7': 4.9875, 'Cluster 8': 3.5625, 'Cluster 9': 3.45, 'Cluster 10': 2.1875, 'Cluster 11': 2.1, 'Cluster 12': 2.075, 'Cluster 13': 2.05, 'Cluster 14': 1.625, 'Cluster 15'... | {'2': 0.4030835986594308, '3': 0.41213797845278194, '4': 0.28184519370791533, '5': 0.2782659947384345, '6': 0.26049209891150327, '7': 0.28602224259339565, '8': 0.2683041607918344} | {'0': [6, 10, 17, 20, 23, 28], '1': [2, 3, 5, 11, 18, 24, 32, 33], '2': [1, 8, 9, 13, 15, 21, 22, 25, 31], '3': [0, 14, 16, 26, 27, 30], '4': [4, 7, 12, 19, 29]} | {'explained_variance_ratio': [0.19083234311377753, 0.12045665882545188, 0.0580365103382071, 0.051312666846653955, 0.04640398171182067, 0.03446913149110076, 0.03388202685711541, 0.0276125386685815, 0.025727441963863795, 0.02152990811757925], 'cumulative_variance': [0.19083234311377753, 0.3112890019392294, 0.369325512277... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G90342RA | WURCS=2.0/7,14,13/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-7-4-2-6-2-6-5/a4-b1_a6-n1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g3-h2_i2-j1_i6-l1_j4-k1_l4-m1 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G11102NL | WURCS=2.0/6,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-6-3-1-5-1-5-4/a4-b1_a6-n1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g3-h2_i2-j1_i6-l1_j4-k1_l4-m1 | null | null | Fucosylated N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -67.18, 'psi': -60.76, 'strain': 0.982, 'linkage': '1-2'}, '3': {'phi': -62.63, 'psi': -71.4, 'strain': 0.558, 'linkage': '1-2'}, '4': {'phi': -70.52, 'psi': -78.73, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -84.81, 'psi': -77.95, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -67.21... | {'MAN5-NAG6': {'2': {'phi': -67.18, 'psi': -60.76, 'strain': 0.982, 'linkage': '1-2'}, '3': {'phi': -62.64, 'psi': -71.41, 'strain': 0.558, 'linkage': '1-2'}, '4': {'phi': -70.53, 'psi': -78.73, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -84.86, 'psi': -77.96, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -67.2... | {'MAN5-NAG6': {'2': {'phi': -67.18, 'psi': -60.76, 'strain': 0.982, 'linkage': '1-2'}, '3': {'phi': -62.63, 'psi': -71.4, 'strain': 0.558, 'linkage': '1-2'}, '4': {'phi': -70.52, 'psi': -78.73, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -84.81, 'psi': -77.95, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -67.21... | null | 14 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G16476DW', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491843451', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491843451', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G16476DW', 'url': 'https://glytoucan.org/Structures/Glycans/G16476DW', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G16476DW', 'url': 'https://sandbox.... | 3,205.62 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 140 | Saccharide | HexNAc(5)Hex(6)dHex(2)NeuAc(1) % 2588.9356031 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3a2D-NeuAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000022', 'name': 'Sialyl Lewis x', 'synonym': 'SLe^x; SLex; Slex',... | {'related_accession': 'G03596YS', 'relationship': 'ancestor'};{'related_accession': 'G49241TZ', 'relationship': 'ancestor'};{'related_accession': 'G52731TX', 'relationship': 'ancestor'};{'related_accession': 'G72601ZT', 'relationship': 'ancestor'};{'related_accession': 'G86880BF', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00025/snfg.svg | ./torsion_data/GS00025_torsion_data.txt | {'Cluster 0': {'count': 13527, '3_2_phi_mean': -75.49, '3_2_psi_mean': 117.79, '4_3_phi_mean': -80.03, '4_3_psi_mean': 106.78, '5_4_phi_mean': -65.04, '5_4_psi_mean': 123.7, '6_5_phi_mean': 60.79, '6_5_psi_mean': 77.3, '3_2_phi_std': 17.03, '3_2_psi_std': 29.74, '4_3_phi_std': 14.0, '4_3_psi_std': 32.13, '5_4_phi_std':... | G05596LB | GS00025 | DFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | DFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcp | D-Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc | α-D-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,5,4/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1 | null | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O[C@H]5O[C@H](C)[C@H](O)[C@H](O)[C@H]5O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO | null | 853.31 | {'motif': 'G00056MO', 'motif_label': 'Type 1 LN'} | D-Fuc(a1-2) | {'Gal': 2, 'D-Fuc': 1, 'GlcNAc': 1, 'Glc': 1} | {'Hex': 3, 'HexNAc': 1, 'dHex': 1} | 13 | 16 | 25 | 9.864106 | {'Cluster 0': 45.09, 'Cluster 1': 27.17, 'Cluster 2': 14.16, 'Cluster 3': 9.37, 'Cluster 4': 4.21} | {'Cluster 0': 35.1265, 'Cluster 1': 23.401, 'Cluster 2': 15.7118, 'Cluster 3': 11.2522, 'Cluster 4': 6.5693, 'Cluster 5': 1.8265, 'Cluster 6': 1.5098, 'Cluster 7': 1.3965, 'Cluster 8': 1.0099, 'Cluster 9': 0.9632, 'Cluster 10': 0.5099, 'Cluster 11': 0.4366, 'Cluster 12': 0.2866} | {'2': 0.6791524690209388, '3': 0.7139811713523586, '4': 0.5416219425615237, '5': 0.4359860359490358, '6': 0.39113425192038115, '7': 0.34720253143267416, '8': 0.33135688793247603} | {'0': [2, 4, 6, 12], '1': [0, 8, 11], '2': [1, 3, 5, 10], '3': [], '4': [7, 9]} | {'explained_variance_ratio': [0.2489544876000775, 0.11958837052554025, 0.07332922370429483, 0.060456044452582736, 0.043722399371741126, 0.032453965816462205, 0.02708914267931489, 0.023574132587717164, 0.01936750637730013, 0.017023222821370563], 'cumulative_variance': [0.2489544876000775, 0.3685428581256177, 0.441872081... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | D-Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(a1- | α-D-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G30502VG | WURCS=2.0/4,5,4/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1 | DFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-OH | D-Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1- | α-D-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G92238TK | WURCS=2.0/4,5,4/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1 | null | null | null | {'GAL5-0FA6': {'2': {'phi': 63.83, 'psi': 72.12, 'strain': 1.823, 'linkage': '1-2'}, '3': {'phi': 89.28, 'psi': 145.44, 'strain': 1.823, 'linkage': '1-2'}, '4': {'phi': 86.53, 'psi': 144.8, 'strain': 1.823, 'linkage': '1-2'}, '5': {'phi': 63.57, 'psi': 80.66, 'strain': 2.449, 'linkage': '1-2'}, '6': {'phi': 63.41, 'psi... | {'GAL5-0FA6': {'2': {'phi': 63.83, 'psi': 72.12, 'strain': 1.823, 'linkage': '1-2'}, '3': {'phi': 89.2, 'psi': 145.5, 'strain': 1.823, 'linkage': '1-2'}, '4': {'phi': 86.5, 'psi': 144.77, 'strain': 1.823, 'linkage': '1-2'}, '5': {'phi': 63.58, 'psi': 80.72, 'strain': 2.449, 'linkage': '1-2'}, '6': {'phi': 63.42, 'psi':... | {'GAL5-0FA6': {'2': {'phi': 63.83, 'psi': 72.12, 'strain': 1.823, 'linkage': '1-2'}, '3': {'phi': 89.28, 'psi': 145.44, 'strain': 1.823, 'linkage': '1-2'}, '4': {'phi': 86.53, 'psi': 144.8, 'strain': 1.823, 'linkage': '1-2'}, '5': {'phi': 63.57, 'psi': 80.66, 'strain': 2.449, 'linkage': '1-2'}, '6': {'phi': 63.41, 'psi... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G05596LB'}]} | 5 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G05596LB', 'url': 'https://glycosmos.org/glycans/show/G05596LB'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G05596LB', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G05596... | {'id': '491873285', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491873285', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '2544', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '29238', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+29238', 'database': 'Ca... | 1,077.56 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 393 | Saccharide | HexNAc(1)Hex(3)dHex(1) % 853.306316675 | freeEnd--?D-Glc--4b1D-Gal,p--3b1D-GlcNAc,p--3b1D-Gal,p--2a1D-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'} | {'related_accession': 'G32220YP', 'relationship': 'ancestor'};{'related_accession': 'G54630CD', 'relationship': 'ancestor'};{'related_accession': 'G94322TC', 'relationship': 'ancestor'};{'related_accession': 'G97848MR', 'relationship': 'ancestor'};{'related_accession': 'G54630CD', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00026/snfg.svg | ./torsion_data/GS00026_torsion_data.txt | {'Cluster 0': {'count': 2655, '3_2_phi_mean': -80.5, '3_2_psi_mean': 90.21, '4_3_phi_mean': -67.3, '4_3_psi_mean': -106.47, '10_4_phi_mean': 73.93, '10_4_psi_mean': 58.44, '5_4_phi_mean': 72.64, '5_4_psi_mean': 127.7, '6_5_phi_mean': -82.08, '6_5_psi_mean': -95.61, '7_6_phi_mean': -70.13, '7_6_psi_mean': -111.99, '9_6_... | G28600QE | GS00026 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-7-4-2-6-2-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g3-h2_i2-j1_i6-l1_j4-k1_l4-m1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,12s:n-acetyl,13b:a-dman-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dgal-HEX-1:5,17b:b-dglc-HEX-1:5,18s:n-ac... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | null | 2,442.88 | null | Fuc(a1-3);Gal(b1-4);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 1 | 5 | 6 | 14.49831 | {'Cluster 0': 29.5, 'Cluster 1': 24.7, 'Cluster 2': 24.59, 'Cluster 3': 12.22, 'Cluster 4': 8.99} | {'Cluster 0': 12.0222, 'Cluster 1': 11.9222, 'Cluster 2': 9.2111, 'Cluster 3': 7.8222, 'Cluster 4': 6.1111, 'Cluster 5': 6.0, 'Cluster 6': 5.7889, 'Cluster 7': 4.8556, 'Cluster 8': 4.8444, 'Cluster 9': 4.2444, 'Cluster 10': 3.5556, 'Cluster 11': 2.4333, 'Cluster 12': 2.2222, 'Cluster 13': 2.2111, 'Cluster 14': 1.9444, ... | {'2': 0.3476732552061386, '3': 0.34526193671506955, '4': 0.3545850509422296, '5': 0.3145909450693408, '6': 0.2679639366328326, '7': 0.2645248366612338, '8': 0.2370772713936274} | {'0': [0, 11, 18, 33], '1': [2, 12, 13, 22, 27, 29], '2': [1, 3, 4, 7, 8, 9, 15, 16, 24, 25, 28, 31, 32], '3': [5, 10, 17, 20, 21, 23], '4': [6, 14, 19, 26, 30]} | {'explained_variance_ratio': [0.16460148011958273, 0.11754770020900092, 0.07538070042756234, 0.05914504514816198, 0.04753214922594705, 0.04303220045434257, 0.03481550319675402, 0.028488412641519238, 0.026950596962555393, 0.023403998887720177], 'cumulative_variance': [0.16460148011958273, 0.28214918032858366, 0.35752988... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G74121YH | WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-7-4-2-6-2-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g3-h2_i2-j1_i6-l1_j4-k1_l4-m1 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G06661NM | WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-6-3-1-5-1-5/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g3-h2_i2-j1_i6-l1_j4-k1_l4-m1 | null | null | N-Glycan | {'MAN5-NAG6': {'2': {'phi': -84.07, 'psi': -78.99, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -80.93, 'psi': -82.34, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -94.81, 'psi': -74.61, 'strain': 0.326, 'linkage': '1-2'}, '5': {'phi': -65.07, 'psi': -72.16, 'strain': 0.558, 'linkage': '1-2'}, '6': {'phi': -59.6... | {'MAN5-NAG6': {'2': {'phi': -84.07, 'psi': -78.99, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -81.04, 'psi': -82.31, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -94.78, 'psi': -74.65, 'strain': 0.326, 'linkage': '1-2'}, '5': {'phi': -65.08, 'psi': -72.15, 'strain': 0.558, 'linkage': '1-2'}, '6': {'phi': -59.6... | {'MAN5-NAG6': {'2': {'phi': -84.07, 'psi': -78.99, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -80.93, 'psi': -82.34, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -94.81, 'psi': -74.61, 'strain': 0.326, 'linkage': '1-2'}, '5': {'phi': -65.07, 'psi': -72.16, 'strain': 0.558, 'linkage': '1-2'}, '6': {'phi': -59.6... | null | 13 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G28600QE', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G28600QE', 'url': 'https://glytoucan.org/Structures/Glycans/G28600QE', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G28600QE', 'url': 'https://sandbox.glyomics.org/explore.html?G28600QE', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G28600QE', 'url': 'https://gnome.glyom... | 3,031.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 151 | Saccharide | HexNAc(5)Hex(6)dHex(1)NeuAc(1) % 2442.87769423 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3a2D-NeuAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000022', 'name': 'Sialyl Lewis x', 'synonym': 'SLe^x; SLex; Slex',... | {'related_accession': 'G17168EK', 'relationship': 'ancestor'};{'related_accession': 'G44930VK', 'relationship': 'ancestor'};{'related_accession': 'G54456ZM', 'relationship': 'ancestor'};{'related_accession': 'G79666IR', 'relationship': 'ancestor'};{'related_accession': 'G86752LQ', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00027/snfg.svg | ./torsion_data/GS00027_torsion_data.txt | {'Cluster 0': {'count': 2309, '3_2_phi_mean': -84.76, '3_2_psi_mean': 97.88, '4_3_phi_mean': -67.51, '4_3_psi_mean': -118.56, '9_4_phi_mean': 62.42, '9_4_psi_mean': 56.27, '5_4_phi_mean': 78.43, '5_4_psi_mean': 127.31, '6_5_phi_mean': -80.77, '6_5_psi_mean': -88.23, '7_6_phi_mean': -68.12, '7_6_psi_mean': -107.58, '8_6... | G03093CG | GS00027 | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-6-7-2-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-l1_i4-j1_j3-k2_l4-m1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-dman-HEX-1:5,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:b-dgal-HEX-1:5,15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,16s:n-acetyl,17b:b-dglc-HEX-1:5,18s:n-ac... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O... | null | 2,442.88 | null | Fuc(a1-3);Gal(b1-4);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 1 | 5 | 6 | 13.961628 | {'Cluster 0': 25.66, 'Cluster 1': 22.91, 'Cluster 2': 21.99, 'Cluster 3': 19.74, 'Cluster 4': 9.7} | {'Cluster 0': 24.3444, 'Cluster 1': 14.8667, 'Cluster 2': 7.5333, 'Cluster 3': 6.5778, 'Cluster 4': 5.4111, 'Cluster 5': 4.6778, 'Cluster 6': 4.1556, 'Cluster 7': 4.1333, 'Cluster 8': 3.7667, 'Cluster 9': 2.8, 'Cluster 10': 2.3111, 'Cluster 11': 2.1, 'Cluster 12': 1.9889, 'Cluster 13': 1.8667, 'Cluster 14': 1.6222, 'Cl... | {'2': 0.3667781863201492, '3': 0.401805434982955, '4': 0.42556177254975625, '5': 0.3448700714577757, '6': 0.2942146806758825, '7': 0.2613087631957428, '8': 0.3027787293809969} | {'0': [2, 5, 7, 12, 16, 18, 22, 25, 30], '1': [6, 9, 19, 21], '2': [1, 3, 10, 11, 14, 15, 17, 23, 24, 27, 28, 29], '3': [0, 13, 20], '4': [4, 8, 26]} | {'explained_variance_ratio': [0.16299865604649463, 0.10495857117862582, 0.08258864052700249, 0.06113132109958842, 0.055243360389820285, 0.04723892661297323, 0.03490735562210602, 0.028566966591042266, 0.025119368109116958, 0.020548041658497482], 'cumulative_variance': [0.16299865604649463, 0.26795722722512044, 0.3505458... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G72138YE | WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-6-7-2-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-l1_i4-j1_j3-k2_l4-m1 | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G31984FM | WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-5-6-1-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-l1_i4-j1_j3-k2_l4-m1 | null | null | N-Glycan | {'MAN5-NAG6': {'2': {'phi': -73.28, 'psi': -92.08, 'strain': 0.971, 'linkage': '1-2'}, '3': {'phi': -77.42, 'psi': -58.81, 'strain': 1.265, 'linkage': '1-2'}, '4': {'phi': -79.63, 'psi': -64.21, 'strain': 0.515, 'linkage': '1-2'}, '5': {'phi': -86.65, 'psi': -69.79, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -67.9... | {'MAN5-NAG6': {'2': {'phi': -73.28, 'psi': -92.08, 'strain': 0.971, 'linkage': '1-2'}, '3': {'phi': -77.44, 'psi': -58.81, 'strain': 1.265, 'linkage': '1-2'}, '4': {'phi': -79.61, 'psi': -64.27, 'strain': 0.515, 'linkage': '1-2'}, '5': {'phi': -86.75, 'psi': -69.77, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -67.9... | {'MAN5-NAG6': {'2': {'phi': -73.28, 'psi': -92.08, 'strain': 0.971, 'linkage': '1-2'}, '3': {'phi': -77.42, 'psi': -58.81, 'strain': 1.265, 'linkage': '1-2'}, '4': {'phi': -79.63, 'psi': -64.21, 'strain': 0.515, 'linkage': '1-2'}, '5': {'phi': -86.65, 'psi': -69.79, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -67.9... | null | 13 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G03093CG', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G03093CG', 'url': 'https://glytoucan.org/Structures/Glycans/G03093CG', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G03093CG', 'url': 'https://sandbox.glyomics.org/explore.html?G03093CG', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G03093CG', 'url': 'https://gnome.glyom... | 3,031.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 151 | Saccharide | HexNAc(5)Hex(6)dHex(1)NeuAc(1) % 2442.87769423 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-ac... | {'related_accession': 'G17168EK', 'relationship': 'ancestor'};{'related_accession': 'G44930VK', 'relationship': 'ancestor'};{'related_accession': 'G54456ZM', 'relationship': 'ancestor'};{'related_accession': 'G79666IR', 'relationship': 'ancestor'};{'related_accession': 'G86752LQ', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00028/snfg.svg | ./torsion_data/GS00028_torsion_data.txt | {'Cluster 0': {'count': 15083, '10_2_phi_mean': -78.26, '10_2_psi_mean': 39.46, '3_2_phi_mean': -77.34, '3_2_psi_mean': 105.51, '4_3_phi_mean': -74.2, '4_3_psi_mean': -120.18, '7_4_phi_mean': 75.98, '7_4_psi_mean': 88.26, '5_4_phi_mean': 72.74, '5_4_psi_mean': 125.92, '6_5_phi_mean': -78.8, '6_5_psi_mean': -84.49, '9_7... | G87309GS | GS00028 | DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/5,9,8/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-2-4-2-2-5/a4-b1_a6-i1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_f6-h1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-dman-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6o(2+1)7d,7:7d(2+1)... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C... | FA3 | 1,665.62 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'} | GlcNAc(b1-2);Fuc(a1-6);GlcNAc(b1-6) | {'GlcNAc': 5, 'Man': 3, 'Fuc': 1} | {'Hex': 3, 'HexNAc': 5, 'dHex': 1} | 29 | 28 | 45 | 13.177822 | {'Cluster 0': 37.71, 'Cluster 1': 23.55, 'Cluster 2': 20.19, 'Cluster 3': 16.2, 'Cluster 4': 2.36} | {'Cluster 0': 19.485, 'Cluster 1': 14.2475, 'Cluster 2': 14.0175, 'Cluster 3': 12.5525, 'Cluster 4': 8.4375, 'Cluster 5': 6.2575, 'Cluster 6': 5.565, 'Cluster 7': 4.7625, 'Cluster 8': 3.5275, 'Cluster 9': 1.795, 'Cluster 10': 1.5975, 'Cluster 11': 1.43, 'Cluster 12': 1.315, 'Cluster 13': 1.2225, 'Cluster 14': 1.1275, '... | {'2': 0.39396037508507215, '3': 0.4003864077136917, '4': 0.31660669985534795, '5': 0.32120979460731447, '6': 0.26027286838142566, '7': 0.2582030226519418, '8': 0.2431629844465906} | {'0': [0, 6, 9, 12, 20], '1': [1, 3, 7, 17, 19, 24], '2': [13, 18], '3': [2, 8, 11, 14, 15], '4': [4, 5, 10, 16, 21, 22, 23, 25]} | {'explained_variance_ratio': [0.16435351214634783, 0.08005812440067445, 0.06177761366546215, 0.054544545514404845, 0.05053398818224614, 0.04557588339036639, 0.03670351765213458, 0.031751056716865234, 0.028617413757089243, 0.02277162591157004], 'cumulative_variance': [0.16435351214634783, 0.24441163654702228, 0.30618925... | 4 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G63038RA | WURCS=2.0/5,9,8/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-2-4-2-2-5/a4-b1_a6-i1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_f6-h1 | DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G80393PG | WURCS=2.0/4,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-1-3-1-1-4/a4-b1_a6-i1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_f6-h1 | FA3 | null | Fucosylated N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -78.35, 'psi': -76.8, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -73.61, 'psi': -78.86, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -86.3, 'psi': -77.23, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -83.95, 'psi': -70.02, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -73.3, '... | {'MAN5-NAG6': {'2': {'phi': -78.35, 'psi': -76.8, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -73.53, 'psi': -78.95, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -86.32, 'psi': -77.22, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -83.89, 'psi': -70.09, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -73.34,... | {'MAN5-NAG6': {'2': {'phi': -78.35, 'psi': -76.8, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -73.61, 'psi': -78.86, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -86.3, 'psi': -77.23, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -83.95, 'psi': -70.02, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -73.3, '... | {'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G87309GS'}]};{'taxon_id': '9823', 'taxon_label': 'Sus scrofa (pig)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G87309GS... | 9 | {'taxid': 9031, 'name': 'Gallus gallus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G80393PG', 'url': 'https://www.glygen.org/glycan/G80393PG'}], 'common_name': 'Chicken', 'glygen_name': 'Chicken', 'reference_species': 'Gallus gallus [9031]'};{'taxid': 7227, 'name': 'Drosophil... | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G87309GS', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491866086', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491866086', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '12592', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '20525', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+20525', 'database': 'C... | 2,058.06 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 218 | Saccharide | HexNAc(5)Hex(3)dHex(1) % 1665.6238071 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p)--6b1D-GlcNAc,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G10821MC', 'relationship': 'ancestor'};{'related_accession': 'G42684TA', 'relationship': 'ancestor'};{'related_accession': 'G44199GS', 'relationship': 'ancestor'};{'related_accession': 'G56322NE', 'relationship': 'ancestor'};{'related_accession': 'G75496QY', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00029/snfg.svg | ./torsion_data/GS00029_torsion_data.txt | {'Cluster 0': {'count': 12784, '3_2_phi_mean': -78.18, '3_2_psi_mean': -124.28, '4_3_phi_mean': -75.77, '4_3_psi_mean': -120.1, '7_4_phi_mean': 74.3, '7_4_psi_mean': 85.41, '5_4_phi_mean': 73.1, '5_4_psi_mean': 127.38, '6_5_phi_mean': -80.84, '6_5_psi_mean': -85.26, '9_7_phi_mean': -77.69, '9_7_psi_mean': -47.03, '8_7_... | G81253FL | GS00029 | DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/4,8,7/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-2-3-4-2-4-2-2/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_f6-h1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-dman-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dglc-HEX-1:5,13s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6o(2+1)7d,7:7d(2+1)8n,8:5o(6+1)9d,9:9o(2+1... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C... | A3 | 1,519.57 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'} | GlcNAc(b1-2);GlcNAc(b1-6) | {'GlcNAc': 5, 'Man': 3} | {'Hex': 3, 'HexNAc': 5} | 27 | 26 | 41 | 12.956709 | {'Cluster 0': 31.96, 'Cluster 1': 25.85, 'Cluster 2': 19.13, 'Cluster 3': 17.1, 'Cluster 4': 5.96} | {'Cluster 0': 17.495, 'Cluster 1': 14.6975, 'Cluster 2': 13.215, 'Cluster 3': 12.085, 'Cluster 4': 11.14, 'Cluster 5': 4.71, 'Cluster 6': 4.2475, 'Cluster 7': 3.8, 'Cluster 8': 3.295, 'Cluster 9': 3.19, 'Cluster 10': 3.1775, 'Cluster 11': 1.4525, 'Cluster 12': 1.425, 'Cluster 13': 1.3175, 'Cluster 14': 1.2925, 'Cluster... | {'2': 0.3649853363008445, '3': 0.31503741013946135, '4': 0.2986143685422183, '5': 0.22865190856506723, '6': 0.20085141758885466, '7': 0.2708115931761619, '8': 0.2584804399595273} | {'0': [1, 2, 4, 16, 21], '1': [5, 6, 7, 12, 15, 22], '2': [0, 9, 11, 17, 18, 19, 20, 23, 24], '3': [], '4': [3, 8, 10, 13, 14]} | {'explained_variance_ratio': [0.1564655475403692, 0.09905686946408852, 0.07015681797507145, 0.05728500654649044, 0.05288948601455667, 0.04359263390539449, 0.028854905266303896, 0.026946262908326083, 0.025285185781855478, 0.021781794198125457], 'cumulative_variance': [0.1564655475403692, 0.2555224170044577, 0.3256792349... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G23849BG | WURCS=2.0/4,8,7/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-2-3-4-2-4-2-2/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_f6-h1 | DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G10219AA | WURCS=2.0/3,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-1-3-1-1/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_f6-h1 | A3 | null | N-Glycan | {'MAN5-NAG6': {'2': {'phi': -83.69, 'psi': -69.62, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -80.03, 'psi': -70.08, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -74.46, 'psi': -88.45, 'strain': 0.234, 'linkage': '1-2'}, '5': {'phi': -85.3, 'psi': -71.71, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -72.88, ... | {'MAN5-NAG6': {'2': {'phi': -83.69, 'psi': -69.62, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -79.98, 'psi': -70.14, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -74.49, 'psi': -88.45, 'strain': 0.234, 'linkage': '1-2'}, '5': {'phi': -85.26, 'psi': -71.74, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -72.91... | {'MAN5-NAG6': {'2': {'phi': -83.69, 'psi': -69.62, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -80.03, 'psi': -70.08, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -74.46, 'psi': -88.45, 'strain': 0.234, 'linkage': '1-2'}, '5': {'phi': -85.3, 'psi': -71.71, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -72.88, ... | {'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G81253FL'}]} | 8 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G10219AA', 'url': 'https://www.glygen.org/glycan/G10219AA'}, {'database': 'Subsumption', 'id': 'G56653RI', 'url': 'https://www.glygen.org/glycan/G56653RI'}], 'common_name': 'Human', 'glygen_name... | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G81253FL', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491864094', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491864094', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '3278', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '2840', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+2840', 'database': 'Carb... | 1,883.97 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 246 | Saccharide | HexNAc(5)Hex(3) % 1519.56589822 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p)--6b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G27827YO', 'relationship': 'ancestor'};{'related_accession': 'G39900FY', 'relationship': 'ancestor'};{'related_accession': 'G49955PK', 'relationship': 'ancestor'};{'related_accession': 'G59096WE', 'relationship': 'ancestor'};{'related_accession': 'G82943PX', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00030/snfg.svg | ./torsion_data/GS00030_torsion_data.txt | {'Cluster 0': {'count': 10927, '3_2_phi_mean': -79.26, '3_2_psi_mean': 101.73, '4_3_phi_mean': -78.27, '4_3_psi_mean': -124.39, '8_4_phi_mean': 74.83, '8_4_psi_mean': -90.08, '5_4_phi_mean': 73.05, '5_4_psi_mean': 122.24, '7_5_phi_mean': -79.85, '7_5_psi_mean': 102.25, '6_5_phi_mean': -78.5, '6_5_psi_mean': -80.87, '10... | G90950UC | GS00030 | DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-4[DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-4[DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/4,9,8/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-2-3-4-2-2-4-2-2/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_d4-f1_g2-h1_g6-i1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dglc-HEX-1:5,10s:n-acetyl,11b:a-dman-HEX-1:5,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:b-dglc-HEX-1:5,15s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6o(2+1)7d,... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@H](O)[C@@H]4O[C@... | A4 | 1,722.65 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'} | GlcNAc(b1-2);GlcNAc(b1-6);GlcNAc(b1-4) | {'GlcNAc': 6, 'Man': 3} | {'Hex': 3, 'HexNAc': 6} | 31 | 29 | 46 | 12.940163 | {'Cluster 0': 27.32, 'Cluster 1': 27.15, 'Cluster 2': 19.17, 'Cluster 3': 16.23, 'Cluster 4': 10.13} | {'Cluster 0': 11.555, 'Cluster 1': 11.16, 'Cluster 2': 9.9525, 'Cluster 3': 8.3575, 'Cluster 4': 8.005, 'Cluster 5': 7.88, 'Cluster 6': 5.675, 'Cluster 7': 4.515, 'Cluster 8': 3.9, 'Cluster 9': 3.635, 'Cluster 10': 3.4475, 'Cluster 11': 3.2325, 'Cluster 12': 2.5875, 'Cluster 13': 2.565, 'Cluster 14': 2.23, 'Cluster 15'... | {'2': 0.34413179515103104, '3': 0.369044820146182, '4': 0.3570590339757086, '5': 0.3280269470186557, '6': 0.3437516365052596, '7': 0.28647062916586835, '8': 0.3488409783427711} | {'0': [1, 5, 14, 18, 19, 24], '1': [7, 15, 21], '2': [3, 9, 13, 22], '3': [0, 6, 10, 12, 20], '4': [2, 4, 8, 11, 16, 17, 23]} | {'explained_variance_ratio': [0.14234873332559297, 0.09183704544880714, 0.07502047161668299, 0.05827786048939353, 0.05174998448728829, 0.04502039236490608, 0.037836199870871536, 0.033154725478519616, 0.0298657898391114, 0.021929453620254974], 'cumulative_variance': [0.14234873332559297, 0.2341857787744001, 0.3092062503... | 4 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-4[DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G62941VF | WURCS=2.0/4,9,8/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-2-3-4-2-2-4-2-2/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_d4-f1_g2-h1_g6-i1 | DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-4[DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G20030CU | WURCS=2.0/3,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-1-1-3-1-1/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_d4-f1_g2-h1_g6-i1 | A4 | null | N-Glycan | {'MAN5-NAG6': {'2': {'phi': -93.84, 'psi': -74.24, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -100.32, 'psi': -69.17, 'strain': 1.173, 'linkage': '1-2'}, '4': {'phi': -83.52, 'psi': -65.87, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -80.84, 'psi': -64.32, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -89.5... | {'MAN5-NAG6': {'2': {'phi': -93.84, 'psi': -74.24, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -100.34, 'psi': -69.21, 'strain': 1.173, 'linkage': '1-2'}, '4': {'phi': -83.45, 'psi': -65.84, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -80.88, 'psi': -64.33, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -89.6... | {'MAN5-NAG6': {'2': {'phi': -93.84, 'psi': -74.24, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -100.32, 'psi': -69.17, 'strain': 1.173, 'linkage': '1-2'}, '4': {'phi': -83.52, 'psi': -65.87, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -80.84, 'psi': -64.32, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -89.5... | {'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G90950UC'}]};{'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glyc... | 9 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G90950UC', 'url': 'https://glycosmos.org/glycans/show/G90950UC'}], 'common_name': 'Bovine', 'glygen_name': 'Bovine', 'reference_species': 'Bos taurus [9913]'};{'taxid': 9031, 'name': 'Gallus gallus', 'an... | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G90950UC', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491867273', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491867273', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1308', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '22602', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+22602', 'database': 'Ca... | 2,129.1 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 218 | Saccharide | HexNAc(6)Hex(3) % 1722.64527083 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p)--6b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G01998SG', 'relationship': 'ancestor'};{'related_accession': 'G19042WB', 'relationship': 'ancestor'};{'related_accession': 'G30306AR', 'relationship': 'ancestor'};{'related_accession': 'G33451SJ', 'relationship': 'ancestor'};{'related_accession': 'G83633GK', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00031/snfg.svg | ./torsion_data/GS00031_torsion_data.txt | {'Cluster 0': {'count': 2790, '3_2_phi_mean': -80.51, '3_2_psi_mean': 100.04, '4_3_phi_mean': -80.09, '4_3_psi_mean': -121.57, '9_4_phi_mean': 73.79, '9_4_psi_mean': 61.1, '5_4_phi_mean': 73.19, '5_4_psi_mean': 128.46, '6_5_phi_mean': -80.32, '6_5_psi_mean': -85.03, '7_6_phi_mean': -69.52, '7_6_psi_mean': -111.99, '8_6... | G47763TG | GS00031 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-6-2-6-7/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-k1_i4-j1_k4-l1_l3-m2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-dman-HEX-1:5,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:b-dgal-HEX-1:5,15b:b-dglc-HEX-1:5,16s:n-acetyl,17b:b-dgal-HEX-1:5,18b:a-dgro-dgal-NON-2:6|1:a|... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[... | null | 2,442.88 | null | Fuc(a1-3);Gal(b1-4);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 1 | 5 | 6 | 14.05568 | {'Cluster 0': 31.0, 'Cluster 1': 20.89, 'Cluster 2': 16.97, 'Cluster 3': 15.68, 'Cluster 4': 15.47} | {'Cluster 0': 11.4556, 'Cluster 1': 7.4667, 'Cluster 2': 6.8333, 'Cluster 3': 6.3111, 'Cluster 4': 5.4444, 'Cluster 5': 5.1, 'Cluster 6': 4.9889, 'Cluster 7': 4.5111, 'Cluster 8': 4.3, 'Cluster 9': 4.2556, 'Cluster 10': 3.8444, 'Cluster 11': 3.7889, 'Cluster 12': 3.3333, 'Cluster 13': 2.9667, 'Cluster 14': 2.7111, 'Clu... | {'2': 0.3368927570368608, '3': 0.39846770702986645, '4': 0.34193104136010305, '5': 0.3173852753637585, '6': 0.3102974202405091, '7': 0.2869126846282046, '8': 0.267192321548737} | {'0': [1, 7, 14, 29], '1': [3, 9, 10, 21, 23, 25, 28], '2': [5, 8, 13, 15, 17, 18, 24, 30], '3': [0, 4, 11, 12, 16, 19, 22, 26], '4': [2, 6, 20, 27]} | {'explained_variance_ratio': [0.1766034616239199, 0.11704830532354467, 0.07625645002274967, 0.06205077015765044, 0.04971046870674511, 0.04177807539282208, 0.032829044229663956, 0.029925566135801905, 0.023334364228512466, 0.020749868288538677], 'cumulative_variance': [0.1766034616239199, 0.2936517669474646, 0.3699082169... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G28954HQ | WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-6-2-6-7/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-k1_i4-j1_k4-l1_l3-m2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G52593LK | WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-5-1-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-k1_i4-j1_k4-l1_l3-m2 | null | null | Biantennary N-Glycan;Complex N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -70.29, 'psi': -57.28, 'strain': 1.265, 'linkage': '1-2'}, '3': {'phi': -74.33, 'psi': -95.61, 'strain': 0.971, 'linkage': '1-2'}, '4': {'phi': -67.12, 'psi': -95.7, 'strain': 1.237, 'linkage': '1-2'}, '5': {'phi': -99.07, 'psi': -54.38, 'strain': 1.667, 'linkage': '1-2'}, '6': {'phi': -74.5... | {'MAN5-NAG6': {'2': {'phi': -70.29, 'psi': -57.28, 'strain': 1.265, 'linkage': '1-2'}, '3': {'phi': -74.28, 'psi': -95.65, 'strain': 0.971, 'linkage': '1-2'}, '4': {'phi': -67.1, 'psi': -95.69, 'strain': 1.237, 'linkage': '1-2'}, '5': {'phi': -99.08, 'psi': -54.31, 'strain': 1.667, 'linkage': '1-2'}, '6': {'phi': -74.5... | {'MAN5-NAG6': {'2': {'phi': -70.29, 'psi': -57.28, 'strain': 1.265, 'linkage': '1-2'}, '3': {'phi': -74.33, 'psi': -95.61, 'strain': 0.971, 'linkage': '1-2'}, '4': {'phi': -67.12, 'psi': -95.7, 'strain': 1.237, 'linkage': '1-2'}, '5': {'phi': -99.07, 'psi': -54.38, 'strain': 1.667, 'linkage': '1-2'}, '6': {'phi': -74.5... | null | 13 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G47763TG', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G47763TG', 'url': 'https://glytoucan.org/Structures/Glycans/G47763TG', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G47763TG', 'url': 'https://sandbox.glyomics.org/explore.html?G47763TG', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G47763TG', 'url': 'https://gnome.glyom... | 3,031.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 151 | Saccharide | HexNAc(5)Hex(6)dHex(1)NeuAc(1) % 2442.87769423 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-ac... | {'related_accession': 'G17168EK', 'relationship': 'ancestor'};{'related_accession': 'G44930VK', 'relationship': 'ancestor'};{'related_accession': 'G54456ZM', 'relationship': 'ancestor'};{'related_accession': 'G79666IR', 'relationship': 'ancestor'};{'related_accession': 'G86752LQ', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00032/snfg.svg | ./torsion_data/GS00032_torsion_data.txt | {'Cluster 0': {'count': 2744, '3_2_phi_mean': -79.69, '3_2_psi_mean': 104.12, '4_3_phi_mean': -73.39, '4_3_psi_mean': -118.82, '10_4_phi_mean': 69.28, '10_4_psi_mean': 91.76, '5_4_phi_mean': 83.77, '5_4_psi_mean': 135.46, '6_5_phi_mean': -80.48, '6_5_psi_mean': -83.51, '8_6_phi_mean': -69.0, '8_6_psi_mean': -108.48, '7... | G46171QF | GS00032 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)[Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/7,15,14/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-7-4-2-6-7-2-6-7/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g3-h2_i2-j1_i6-m1_j4-k1_k6-l2_m4-n1_n3-o2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,12s:n-acetyl,13b:a-dman-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dgal-HEX-1:5,17b:a-dgro-dgal-NON-2:6|1:a... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O... | null | 3,025.07 | null | Fuc(a1-3);Neu5Ac(a2-6);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Neu5Ac': 3, 'Gal': 3, 'Man': 3, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 3, 'dHex': 1} | 1 | 5 | 6 | 14.972449 | {'Cluster 0': 34.3, 'Cluster 1': 19.34, 'Cluster 2': 18.99, 'Cluster 3': 14.82, 'Cluster 4': 12.55} | {'Cluster 0': 11.6, 'Cluster 1': 8.9375, 'Cluster 2': 7.9125, 'Cluster 3': 6.7, 'Cluster 4': 6.3125, 'Cluster 5': 5.4, 'Cluster 6': 5.1125, 'Cluster 7': 4.8375, 'Cluster 8': 4.5625, 'Cluster 9': 4.4, 'Cluster 10': 4.125, 'Cluster 11': 2.9, 'Cluster 12': 2.225, 'Cluster 13': 2.1375, 'Cluster 14': 2.0625, 'Cluster 15': 1... | {'2': 0.2704018159464119, '3': 0.35007843363351987, '4': 0.3472369031212646, '5': 0.34939691593061367, '6': 0.33596296376091456, '7': 0.30396514757411114, '8': 0.3123355096651858} | {'0': [3, 8, 17, 24, 33, 35], '1': [6, 10, 13, 18, 22, 26, 28, 31], '2': [0, 4, 12, 16, 27, 29, 36], '3': [2, 7, 15, 20, 30, 34, 37], '4': [1, 5, 9, 11, 14, 19, 21, 23, 25, 32]} | {'explained_variance_ratio': [0.14255199222485426, 0.12446242912044336, 0.08621526232714108, 0.061020723760575414, 0.04726177261679942, 0.044106412381584116, 0.03414166349551028, 0.02697656940929443, 0.025137385167505077, 0.020592588854535257], 'cumulative_variance': [0.14255199222485426, 0.2670144213452976, 0.35322968... | 4 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)[Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G82941MZ | WURCS=2.0/7,15,14/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-7-4-2-6-7-2-6-7/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g3-h2_i2-j1_i6-m1_j4-k1_k6-l2_m4-n1_n3-o2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)[Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G99801VV | WURCS=2.0/6,15,14/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-6-3-1-5-6-1-5-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g3-h2_i2-j1_i6-m1_j4-k1_k6-l2_m4-n1_n3-o2 | null | null | N-Glycan | {'MAN5-NAG6': {'2': {'phi': -76.15, 'psi': -70.38, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -85.6, 'psi': -162.3, 'strain': 2.783, 'linkage': '1-2'}, '4': {'phi': -74.83, 'psi': -79.52, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -98.85, 'psi': -81.04, 'strain': 0.71, 'linkage': '1-2'}, '6': {'phi': -67.36... | {'MAN5-NAG6': {'2': {'phi': -76.15, 'psi': -70.38, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -85.49, 'psi': -162.31, 'strain': 2.783, 'linkage': '1-2'}, '4': {'phi': -74.86, 'psi': -79.45, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -98.81, 'psi': -81.06, 'strain': 0.71, 'linkage': '1-2'}, '6': {'phi': -67.... | {'MAN5-NAG6': {'2': {'phi': -76.15, 'psi': -70.38, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -85.6, 'psi': -162.3, 'strain': 2.783, 'linkage': '1-2'}, '4': {'phi': -74.83, 'psi': -79.52, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -98.85, 'psi': -81.04, 'strain': 0.71, 'linkage': '1-2'}, '6': {'phi': -67.36... | null | 15 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G46171QF', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G46171QF', 'url': 'https://glytoucan.org/Structures/Glycans/G46171QF', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G46171QF', 'url': 'https://sandbox.glyomics.org/explore.html?G46171QF', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G46171QF', 'url': 'https://gnome.glyom... | 3,753.88 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 131 | Saccharide | HexNAc(5)Hex(6)dHex(1)NeuAc(3) % 3025.0685275 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3a2D-NeuAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p--6a2D-NeuAc,p)--6b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000022', 'name': 'Sialyl Lewis x', 'synonym': 'SLe^x; SLex; Slex',... | {'related_accession': 'G13300LP', 'relationship': 'ancestor'};{'related_accession': 'G25930WB', 'relationship': 'ancestor'};{'related_accession': 'G28352HT', 'relationship': 'ancestor'};{'related_accession': 'G58196VT', 'relationship': 'ancestor'};{'related_accession': 'G70232NH', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00033/snfg.svg | ./torsion_data/GS00033_torsion_data.txt | {'Cluster 0': {'count': 2430, '3_2_phi_mean': -80.16, '3_2_psi_mean': 100.48, '4_3_phi_mean': -81.04, '4_3_psi_mean': -117.14, '10_4_phi_mean': 78.0, '10_4_psi_mean': 85.87, '5_4_phi_mean': 72.14, '5_4_psi_mean': 134.56, '6_5_phi_mean': -80.29, '6_5_psi_mean': -84.99, '8_6_phi_mean': -68.22, '8_6_psi_mean': -108.53, '7... | G57923KF | GS00033 | DNeup5Aca2-6DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DNeup5Aca2-6DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)[Neu5Ac(a2-6)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/7,16,15/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-7-4-2-6-7-2-5-6-7/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g6-h2_i2-j1_i6-m1_j4-k1_k6-l2_m3-n1_m4-o1_o6-p2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,12s:n-acetyl,13b:a-dman-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dgal-HEX-1:5,17b:a-dgro-dgal-NON-2:6|1:a... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H](O)[C@H](O)[C@H]6O)[C@H](O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O... | null | 3,171.13 | null | Fuc(a1-3);Neu5Ac(a2-6) | {'GlcNAc': 5, 'Neu5Ac': 3, 'Gal': 3, 'Man': 3, 'Fuc': 2} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 3, 'dHex': 2} | 1 | 5 | 6 | 14.763715 | {'Cluster 0': 30.38, 'Cluster 1': 27.43, 'Cluster 2': 18.73, 'Cluster 3': 13.38, 'Cluster 4': 10.1} | {'Cluster 0': 28.325, 'Cluster 1': 8.225, 'Cluster 2': 7.9875, 'Cluster 3': 7.2625, 'Cluster 4': 4.875, 'Cluster 5': 4.525, 'Cluster 6': 4.4875, 'Cluster 7': 4.075, 'Cluster 8': 3.4875, 'Cluster 9': 3.3875, 'Cluster 10': 3.3, 'Cluster 11': 2.1125, 'Cluster 12': 1.6375, 'Cluster 13': 1.5375, 'Cluster 14': 1.5, 'Cluster ... | {'2': 0.4043858480396044, '3': 0.29202036072710097, '4': 0.36869667436973447, '5': 0.2834175639842849, '6': 0.2643419727598639, '7': 0.26589840076365917, '8': 0.2567088634850188} | {'0': [2, 3, 6, 9, 14, 20, 21, 23, 29, 31, 32], '1': [0, 24], '2': [1, 5, 8, 11, 12, 17, 19, 25, 28, 33, 34, 35], '3': [4, 7, 10, 13, 18, 26, 27, 30], '4': [15, 16, 22]} | {'explained_variance_ratio': [0.16308666816388795, 0.10163041790133594, 0.07419397476404606, 0.06238357224446994, 0.04367843623914515, 0.03512330558384018, 0.03310053045064726, 0.029206434381839588, 0.024909561344771906, 0.02133321216605576], 'cumulative_variance': [0.16308666816388795, 0.26471708606522387, 0.338911060... | 4 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DNeup5Aca2-6DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)[Neu5Ac(a2-6)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G19697PM | WURCS=2.0/7,16,15/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-7-4-2-6-7-2-5-6-7/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g6-h2_i2-j1_i6-m1_j4-k1_k6-l2_m3-n1_m4-o1_o6-p2 | DNeup5Aca2-6DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)[Neu5Ac(a2-6)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G09263FO | WURCS=2.0/6,16,15/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-6-3-1-5-6-1-4-5-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g6-h2_i2-j1_i6-m1_j4-k1_k6-l2_m3-n1_m4-o1_o6-p2 | null | null | N-Glycan | {'MAN5-NAG6': {'2': {'phi': -69.01, 'psi': -72.91, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -71.24, 'psi': -72.14, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -79.52, 'psi': -96.2, 'strain': 0.971, 'linkage': '1-2'}, '5': {'phi': -75.56, 'psi': -111.45, 'strain': 1.425, 'linkage': '1-2'}, '6': {'phi': -81.... | {'MAN5-NAG6': {'2': {'phi': -69.01, 'psi': -72.91, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -71.31, 'psi': -72.11, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -79.57, 'psi': -96.12, 'strain': 0.971, 'linkage': '1-2'}, '5': {'phi': -75.51, 'psi': -111.47, 'strain': 1.425, 'linkage': '1-2'}, '6': {'phi': -81... | {'MAN5-NAG6': {'2': {'phi': -69.01, 'psi': -72.91, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -71.24, 'psi': -72.14, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -79.52, 'psi': -96.2, 'strain': 0.971, 'linkage': '1-2'}, '5': {'phi': -75.56, 'psi': -111.45, 'strain': 1.425, 'linkage': '1-2'}, '6': {'phi': -81.... | null | 16 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G57923KF', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': 'G57923KF', 'url': 'https://glytoucan.org/Structures/Glycans/G57923KF', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G57923KF', 'url': 'https://sandbox.glyomics.org/explore.html?G57923KF', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G57923KF', 'url': 'https://gnome.glyom... | 3,927.97 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 123 | Saccharide | HexNAc(5)Hex(6)dHex(2)NeuAc(3) % 3171.12643637 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--6a2D-NeuAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p--6a2D-NeuAc,p)--6b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--6a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G06704MH', 'relationship': 'ancestor'};{'related_accession': 'G40360IE', 'relationship': 'ancestor'};{'related_accession': 'G56518TU', 'relationship': 'ancestor'};{'related_accession': 'G83744JN', 'relationship': 'ancestor'};{'related_accession': 'G83744JN', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00034/snfg.svg | ./torsion_data/GS00034_torsion_data.txt | {'Cluster 0': {'count': 3177, '3_2_phi_mean': -79.9, '3_2_psi_mean': 102.16, '4_3_phi_mean': -80.43, '4_3_psi_mean': -124.08, '9_4_phi_mean': 76.35, '9_4_psi_mean': 78.88, '5_4_phi_mean': 73.84, '5_4_psi_mean': 120.19, '6_5_phi_mean': -81.02, '6_5_psi_mean': -84.47, '8_6_phi_mean': -67.99, '8_6_psi_mean': -108.01, '7_6... | G83974TW | GS00034 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-6-2-6-7/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-k1_i4-j1_k4-l1_l6-m2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-dman-HEX-1:5,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:b-dgal-HEX-1:5,15b:b-dglc-HEX-1:5,16s:n-acetyl,17b:b-dgal-HEX-1:5,18b:a-dgro-dgal-NON-2:6|1:a|... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[... | null | 2,442.88 | null | Gal(b1-4);Neu5Ac(a2-6);Fuc(a1-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 1 | 5 | 6 | 14.162117 | {'Cluster 0': 35.3, 'Cluster 1': 24.98, 'Cluster 2': 18.01, 'Cluster 3': 14.09, 'Cluster 4': 7.62} | {'Cluster 0': 12.0444, 'Cluster 1': 8.9, 'Cluster 2': 7.4444, 'Cluster 3': 6.5778, 'Cluster 4': 6.3667, 'Cluster 5': 6.2556, 'Cluster 6': 5.9667, 'Cluster 7': 4.7333, 'Cluster 8': 4.3778, 'Cluster 9': 4.1778, 'Cluster 10': 4.1333, 'Cluster 11': 3.4444, 'Cluster 12': 3.0, 'Cluster 13': 2.7, 'Cluster 14': 2.4889, 'Cluste... | {'2': 0.39494387168364997, '3': 0.3193352748109012, '4': 0.32762473901353956, '5': 0.30433122352224823, '6': 0.3236300960851657, '7': 0.32319241554605865, '8': 0.29366353739039736} | {'0': [0, 6, 16, 20, 29, 31], '1': [9, 15, 19, 22, 25], '2': [2, 3, 5, 7, 12, 13, 18, 21, 24, 27, 28], '3': [8, 26], '4': [1, 4, 10, 11, 14, 17, 23, 30]} | {'explained_variance_ratio': [0.2100814103348591, 0.09443274640600957, 0.07868924058469007, 0.06454337161560482, 0.05212058443301947, 0.0422172992259374, 0.025475426741542507, 0.023464964879771646, 0.022943731010311254, 0.016636619842538683], 'cumulative_variance': [0.2100814103348591, 0.3045141567408687, 0.38320339732... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G90874TM | WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-6-2-6-7/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-k1_i4-j1_k4-l1_l6-m2 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G25821ZR | WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-5-1-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-k1_i4-j1_k4-l1_l6-m2 | null | null | Biantennary N-Glycan;Complex N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -77.45, 'psi': -85.49, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -80.33, 'psi': -86.83, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -64.27, 'psi': -88.34, 'strain': 0.758, 'linkage': '1-2'}, '5': {'phi': -90.86, 'psi': -71.29, 'strain': 0.326, 'linkage': '1-2'}, '6': {'phi': -81.... | {'MAN5-NAG6': {'2': {'phi': -77.45, 'psi': -85.49, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -80.27, 'psi': -86.89, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -64.31, 'psi': -88.32, 'strain': 0.758, 'linkage': '1-2'}, '5': {'phi': -90.83, 'psi': -71.27, 'strain': 0.326, 'linkage': '1-2'}, '6': {'phi': -81.... | {'MAN5-NAG6': {'2': {'phi': -77.45, 'psi': -85.49, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -80.33, 'psi': -86.83, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -64.27, 'psi': -88.34, 'strain': 0.758, 'linkage': '1-2'}, '5': {'phi': -90.86, 'psi': -71.29, 'strain': 0.326, 'linkage': '1-2'}, '6': {'phi': -81.... | null | 13 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G83974TW', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G83974TW', 'url': 'https://glytoucan.org/Structures/Glycans/G83974TW', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G83974TW', 'url': 'https://sandbox.glyomics.org/explore.html?G83974TW', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G83974TW', 'url': 'https://gnome.glyom... | 3,031.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 151 | Saccharide | HexNAc(5)Hex(6)dHex(1)NeuAc(1) % 2442.87769423 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p--6a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G17168EK', 'relationship': 'ancestor'};{'related_accession': 'G44930VK', 'relationship': 'ancestor'};{'related_accession': 'G54456ZM', 'relationship': 'ancestor'};{'related_accession': 'G79666IR', 'relationship': 'ancestor'};{'related_accession': 'G86752LQ', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00035/snfg.svg | ./torsion_data/GS00035_torsion_data.txt | {'Cluster 0': {'count': 8907, '3_2_phi_mean': -74.01, '3_2_psi_mean': 117.26, '4_3_phi_mean': -77.5, '4_3_psi_mean': 83.45, '5_4_phi_mean': -66.45, '5_4_psi_mean': 126.51, '6_5_phi_mean': -69.46, '6_5_psi_mean': 137.41, '3_2_phi_std': 11.64, '3_2_psi_std': 19.13, '4_3_phi_std': 12.34, '4_3_psi_std': 16.65, '5_4_phi_std... | G30404IO | GS00035 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAca1-OH | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAc | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-D-GlcNAc | WURCS=2.0/4,5,4/[u2122h_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:b-dglc-HEX-1:5,5s:n-acetyl,6b:b-dgal-HEX-1:5,7b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3o(3+1)4d,4:4d(2+1)5n,5:4o(3+1)6d,6:6o(2+1)7d, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO | null | 894.33 | null | Fuc(a1-2) | {'Gal': 2, 'GlcNAc': 2, 'Fuc': 1} | {'Hex': 2, 'HexNAc': 2, 'dHex': 1} | 1 | 5 | 6 | 11.902374 | {'Cluster 0': 29.69, 'Cluster 1': 29.66, 'Cluster 2': 23.48, 'Cluster 3': 8.97, 'Cluster 4': 8.2} | {'Cluster 0': 34.9498, 'Cluster 1': 23.0744, 'Cluster 2': 16.0684, 'Cluster 3': 9.5957, 'Cluster 4': 5.7761, 'Cluster 5': 3.8929, 'Cluster 6': 1.7698, 'Cluster 7': 1.3465, 'Cluster 8': 0.9099, 'Cluster 9': 0.8632, 'Cluster 10': 0.6433, 'Cluster 11': 0.3066, 'Cluster 12': 0.2733, 'Cluster 13': 0.23, 'Cluster 14': 0.17, ... | {'2': 0.2940470224596923, '3': 0.26929230939167603, '4': 0.23821253624477715, '5': 0.2221826003347159, '6': 0.2129889081378477, '7': 0.2094506801085129, '8': 0.21179040090095616} | {'0': [2, 4, 8, 10, 18], '1': [0, 13], '2': [7, 17], '3': [12, 16, 19], '4': [1, 3, 5, 6, 9, 11, 14, 15]} | {'explained_variance_ratio': [0.15562962690046198, 0.10274289974598987, 0.059443124765673594, 0.056244277504099646, 0.04872210113079528, 0.03490917757727599, 0.03066596019273209, 0.02924910685334393, 0.025565584184811856, 0.01930769573014989], 'cumulative_variance': [0.15562962690046198, 0.25837252664645183, 0.31781565... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAca1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-α-D-GlcpNAc-(1→ | G00590OY | WURCS=2.0/4,5,4/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→ | G66677YT | WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-1-2-3/a4-b1_b3-c1_c3-d1_d2-e1 | null | null | null | {'GAL5-FUC6': {'2': {'phi': -70.26, 'psi': 139.79, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -63.16, 'psi': 131.71, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -61.61, 'psi': 136.8, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -75.92, 'psi': 137.34, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -73.6... | {'GAL5-FUC6': {'2': {'phi': -70.26, 'psi': 139.79, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -63.15, 'psi': 131.66, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -61.64, 'psi': 136.78, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -75.91, 'psi': 137.35, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -73.... | {'GAL5-FUC6': {'2': {'phi': -70.26, 'psi': 139.79, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -63.16, 'psi': 131.71, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -61.61, 'psi': 136.8, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -75.92, 'psi': 137.34, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -73.6... | null | 5 | null | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': 'G30404IO', 'url': 'https://glytoucan.org/Structures/Glycans/G30404IO', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G30404IO', 'url': 'https://gnome.glyomics.org/restrictions/GlyGen.StructureBrowser.html?focus=G30404IO', 'database': 'GNOme', 'categories': ['Ontology and Dictionary', 'Glycomics'... | 1,118.58 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 393 | Saccharide | HexNAc(2)Hex(2)dHex(1) % 894.33286578 | freeEnd--?D-GlcNAc--4b1D-Gal,p--3b1D-GlcNAc,p--3b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000042', 'name': 'Blood group H (type 1)', 'keyw... | {'related_accession': 'G40076YB', 'relationship': 'ancestor'};{'related_accession': 'G71784JC', 'relationship': 'ancestor'};{'related_accession': 'G93579XB', 'relationship': 'ancestor'};{'related_accession': 'G97996TJ', 'relationship': 'ancestor'};{'related_accession': 'G93579XB', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00036/snfg.svg | ./torsion_data/GS00036_torsion_data.txt | {'Cluster 0': {'count': 2604, '3_2_phi_mean': -80.91, '3_2_psi_mean': 83.42, '4_3_phi_mean': -77.19, '4_3_psi_mean': -122.23, '9_4_phi_mean': 76.83, '9_4_psi_mean': 65.48, '5_4_phi_mean': 73.05, '5_4_psi_mean': 125.51, '6_5_phi_mean': -79.41, '6_5_psi_mean': -87.11, '7_6_phi_mean': -72.39, '7_6_psi_mean': -120.22, '13_... | G03346FO | GS00036 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,14,13/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-l1_i4-j1_j6-k2_l4-m1_m6-n2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,17s:n-acety... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O... | A3G3S3 | 2,879.01 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Neu5Ac(a2-6) | {'GlcNAc': 5, 'Neu5Ac': 3, 'Gal': 3, 'Man': 3} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 3} | 57 | 50 | 80 | 14.891174 | {'Cluster 0': 32.55, 'Cluster 1': 22.85, 'Cluster 2': 17.84, 'Cluster 3': 14.32, 'Cluster 4': 12.44} | {'Cluster 0': 9.6875, 'Cluster 1': 8.75, 'Cluster 2': 5.9875, 'Cluster 3': 4.7375, 'Cluster 4': 4.5, 'Cluster 5': 4.3, 'Cluster 6': 4.175, 'Cluster 7': 4.025, 'Cluster 8': 3.9875, 'Cluster 9': 3.975, 'Cluster 10': 3.5625, 'Cluster 11': 3.375, 'Cluster 12': 3.075, 'Cluster 13': 2.75, 'Cluster 14': 2.7, 'Cluster 15': 2.6... | {'2': 0.3163522900005213, '3': 0.2959171947048279, '4': 0.3259104626553648, '5': 0.3330511958331909, '6': 0.31932918747642564, '7': 0.27059514629307285, '8': 0.2679068640652249} | {'0': [3, 12, 13, 26, 30, 33], '1': [0, 6, 20, 28, 29], '2': [5, 19, 21, 31], '3': [2, 7, 8, 9, 11, 16, 18, 22, 24, 27, 35, 36], '4': [1, 4, 10, 14, 15, 17, 23, 25, 32, 34]} | {'explained_variance_ratio': [0.14356138791052467, 0.10723557522206768, 0.0957977959252806, 0.05577268553855181, 0.052339651203856766, 0.0421663364276969, 0.031195659341127908, 0.029344701125891538, 0.027440608391476492, 0.019148083086721033], 'cumulative_variance': [0.14356138791052467, 0.25079696313259237, 0.34659475... | 4 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G55453II | WURCS=2.0/6,14,13/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-l1_i4-j1_j6-k2_l4-m1_m6-n2 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G25505UF | WURCS=2.0/5,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-4-5-1-4-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-l1_i4-j1_j6-k2_l4-m1_m6-n2 | A3G3S3 | null | N-Glycan | {'MAN5-NAG6': {'2': {'phi': -80.0, 'psi': -73.6, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -71.04, 'psi': -54.41, 'strain': 1.265, 'linkage': '1-2'}, '4': {'phi': -74.28, 'psi': -73.47, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -113.93, 'psi': -78.53, 'strain': 1.956, 'linkage': '1-2'}, '6': {'phi': -79.4... | {'MAN5-NAG6': {'2': {'phi': -80.0, 'psi': -73.6, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -71.13, 'psi': -54.36, 'strain': 1.265, 'linkage': '1-2'}, '4': {'phi': -74.23, 'psi': -73.51, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -113.95, 'psi': -78.51, 'strain': 1.956, 'linkage': '1-2'}, '6': {'phi': -79.4... | {'MAN5-NAG6': {'2': {'phi': -80.0, 'psi': -73.6, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -71.04, 'psi': -54.41, 'strain': 1.265, 'linkage': '1-2'}, '4': {'phi': -74.28, 'psi': -73.47, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -113.93, 'psi': -78.53, 'strain': 1.956, 'linkage': '1-2'}, '6': {'phi': -79.4... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00037/snfg.svg | ./torsion_data/GS00037_torsion_data.txt | {'Cluster 0': {'count': 13269, '3_2_phi_mean': -64.37, '3_2_psi_mean': 141.92, '3_2_phi_std': 7.19, '3_2_psi_std': 21.58}, 'Cluster 1': {'count': 7991, '3_2_phi_mean': -77.18, '3_2_psi_mean': 142.52, '3_2_phi_std': 8.8, '3_2_psi_std': 21.78}, 'Cluster 2': {'count': 6437, '3_2_phi_mean': -75.73, '3_2_psi_mean': 106.68, ... | G67189MD | GS00037 | LFucpa1-2DGalpb1-OH | LFucpa1-2DGalp | Fuc(a1-2)Gal | α-L-Fucp-(1→2)-D-Gal | WURCS=2.0/2,2,1/[u2112h][a1221m-1a_1-5]/1-2/a2-b1 | RES,1b:b-dgal-HEX-1:5,2b:a-lgal-HEX-1:5|6:d,LIN,1:1o(2+1)2d, | O1C(O)[C@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@@H](O)[C@@H](O)[C@H]1CO | null | 326.12 | null | Fuc(a1-2) | {'Fuc': 1, 'Gal': 1} | {'Hex': 1, 'dHex': 1} | 3 | 7 | 10 | 8.459332 | {'Cluster 0': 44.23, 'Cluster 1': 26.63, 'Cluster 2': 21.45, 'Cluster 3': 5.13, 'Cluster 4': 2.56} | {'Cluster 0': 78.6988, 'Cluster 1': 9.1658, 'Cluster 2': 4.4262, 'Cluster 3': 2.9397, 'Cluster 4': 1.3899, 'Cluster 5': 1.1299, 'Cluster 6': 0.8532, 'Cluster 7': 0.8399, 'Cluster 8': 0.4366, 'Cluster 9': 0.12} | {'2': 0.3862947860551923, '3': 0.4690649969574058, '4': 0.25158105039067313, '5': 0.2569762255609438, '6': 0.22840395127517238, '7': 0.22499215014521146, '8': 0.23760727502016524} | {'0': [6], '1': [0], '2': [1, 3], '3': [2, 5, 8], '4': [4, 7, 9]} | {'explained_variance_ratio': [0.1478222322579091, 0.09878288665676692, 0.08378815719825548, 0.06316064070752199, 0.03486109421877747, 0.03344432101619095, 0.02904480360468417, 0.0254180892133442, 0.02442250796788225, 0.02391182159504959], 'cumulative_variance': [0.1478222322579091, 0.246605118914676, 0.3303932761129315... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpa1-OH | Fuc(a1-2)Gal(a1- | α-L-Fucp-(1→2)-α-D-Galp-(1→ | G37862DQ | WURCS=2.0/2,2,1/[a2112h-1a_1-5][a1221m-1a_1-5]/1-2/a2-b1 | LFucpa1-2DGalpb1-OH | Fuc(a1-2)Gal(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→ | G00068MO | WURCS=2.0/2,2,1/[a2112h-1b_1-5][a1221m-1a_1-5]/1-2/a2-b1 | null | null | null | {'GAL2-FUC3': {'2': {'phi': -77.33, 'psi': 139.12, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -76.41, 'psi': 152.95, 'strain': 1.347, 'linkage': '1-2'}, '4': {'phi': -58.24, 'psi': 119.89, 'strain': 2.236, 'linkage': '1-2'}, '5': {'phi': -106.06, 'psi': 134.61, 'strain': 2.369, 'linkage': '1-2'}, '6': {'phi': -72... | {'GAL2-FUC3': {'2': {'phi': -77.33, 'psi': 139.12, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -76.4, 'psi': 152.96, 'strain': 1.347, 'linkage': '1-2'}, '4': {'phi': -58.37, 'psi': 120.04, 'strain': 1.886, 'linkage': '1-2'}, '5': {'phi': -106.08, 'psi': 134.62, 'strain': 2.369, 'linkage': '1-2'}, '6': {'phi': -72.... | {'GAL2-FUC3': {'2': {'phi': -77.33, 'psi': 139.12, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -76.41, 'psi': 152.95, 'strain': 1.347, 'linkage': '1-2'}, '4': {'phi': -58.24, 'psi': 119.89, 'strain': 2.236, 'linkage': '1-2'}, '5': {'phi': -106.06, 'psi': 134.61, 'strain': 2.369, 'linkage': '1-2'}, '6': {'phi': -72... | {'taxon_id': '10114', 'taxon_label': 'Rattus', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G67189MD'}]};{'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G67189MD'}]};{'taxon_id'... | 2 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G67189MD', 'url': 'https://glycosmos.org/glycans/show/G67189MD'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'};{'taxid': 9823, 'name': 'Sus scrofa', 'ann... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491859570', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491859570', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '643', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10066', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+10066', 'database': 'Car... | 424.23 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 984 | Saccharide | Hex(1)dHex(1) % 326.12129707 | freeEnd--?D-Gal--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G04537GR', 'relationship': 'ancestor'};{'related_accession': 'G08012BR', 'relationship': 'ancestor'};{'related_accession': 'G08453HV', 'relationship': 'ancestor'};{'related_accession': 'G42494UJ', 'relationship': 'ancestor'};{'related_accession': 'G53862OE', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00038/snfg.svg | ./torsion_data/GS00038_torsion_data.txt | {'Cluster 0': {'count': 13856, '3_2_phi_mean': 75.38, '3_2_psi_mean': -141.54, '4_3_phi_mean': -78.85, '4_3_psi_mean': 111.1, '5_4_phi_mean': 78.04, '5_4_psi_mean': -117.24, '6_5_phi_mean': -77.46, '6_5_psi_mean': 118.74, '7_6_phi_mean': 76.88, '7_6_psi_mean': -144.82, '8_7_phi_mean': -76.5, '8_7_psi_mean': 117.99, '9_... | G85907IW | GS00038 | DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNS[6S]a1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAc[6S]a1-4DGlcpAb1-OH | DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNS[6S]a1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAc[6S]a1-4DGlcpA | GlcNS6S(a1-4)IdoA2S(a1-4)GlcNS6S(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNS(a1-4)IdoA(a1-4)GlcNAc6S(a1-4)GlcA | α-D-GlcpN2,6S2-(1→4)-α-L-IdopA2S-(1→4)-α-D-GlcpN2,6S2-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpNAc6S-(1→4)-D-GlcA | WURCS=2.0/8,10,9/[u2122A][a2122h-1a_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a2121A-1a_1-5][a2122h-1a_1-5_2*NSO/3=O/3=O][a2122A-1b_1-5][a2122h-1a_1-5_2*NCC/3=O][a2122h-1a_1-5_2*NSO/3=O/3=O_6*OSO/3=O/3=O][a2121A-1a_1-5_2*OSO/3=O/3=O]/1-2-3-4-5-6-5-7-8-7/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1 | RES,1b:b-dglc-HEX-1:5|-1:a,2b:a-dglc-HEX-1:5,3b:a-lido-HEX-1:5|-1:a,4b:a-dglc-HEX-1:5,5s:n-sulfate,6b:b-dglc-HEX-1:5|-1:a,7b:a-dglc-HEX-1:5,8s:n-acetyl,9b:b-dglc-HEX-1:5|-1:a,10b:a-dglc-HEX-1:5,11b:a-lido-HEX-1:5,12s:sulfate,13b:a-dglc-HEX-1:5,14s:sulfate,15s:sulfate,16s:sulfate,LIN,1:1o(4+1)2d,2:2o(4+1)3d,3:3o(4+1)4d,... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@H]2O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]3O[C@@H](C(=O)O)[C@@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](C(=O)O)[C@@H](O[C@H]6O[C@H](CO)[C@@H](O[C@@H]7O[C@H](C(=O)O)[C@@H](O[C@H]8O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]9O[C@@H](C(=O)O)[C@@H](O[C@H]%10O[C@H](COS(=O)(=O)O)[C@@H](O)[C@H](O)[C@H]%10NS(... | null | 2,347.23 | null | GlcNS6S(a1-4) | {'GlcA': 3, 'GlcNS6S': 2, 'IdoA2S': 1, 'GlcNAc': 1, 'GlcNS': 1, 'IdoA': 1, 'GlcNAc6S': 1} | {'HexA': 5, 'HexN': 3, 'HexNAc': 2, 'S': 7} | 1 | 5 | 6 | 14.330341 | {'Cluster 0': 46.19, 'Cluster 1': 22.5, 'Cluster 2': 13.76, 'Cluster 3': 13.48, 'Cluster 4': 4.08} | {'Cluster 0': 39.32, 'Cluster 1': 28.6733, 'Cluster 2': 11.0867, 'Cluster 3': 3.52, 'Cluster 4': 3.4667, 'Cluster 5': 2.36, 'Cluster 6': 2.34, 'Cluster 7': 1.7933, 'Cluster 8': 1.6233, 'Cluster 9': 1.4367, 'Cluster 10': 1.1, 'Cluster 11': 0.5633, 'Cluster 12': 0.53, 'Cluster 13': 0.44, 'Cluster 14': 0.3767, 'Cluster 15... | {'2': 0.45570889025052475, '3': 0.25682904576868615, '4': 0.25859437278396086, '5': 0.25452287710940974, '6': 0.23659641330955336, '7': 0.23885475731107905, '8': 0.23359492296690237} | {'0': [21, 22, 30], '1': [7, 11, 19, 29], '2': [1, 2, 3, 4, 5, 6, 8, 9, 10, 12, 14, 15, 16, 20, 24, 26, 28, 31, 32], '3': [17, 18, 23, 25], '4': [0, 13, 27]} | {'explained_variance_ratio': [0.17822013547338628, 0.07018154476977394, 0.06602587399402841, 0.046955135046021265, 0.041462419618696775, 0.03462651860346469, 0.027450776356893525, 0.022765434939084356, 0.0201311243031326, 0.017843014421079707], 'cumulative_variance': [0.17822013547338628, 0.24840168024316023, 0.3144275... | 1.5 | AMBER | GLYCAM_06j_GAG | 300 | 1 | 200 | DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNS[6S]a1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAc[6S]a1-4DGlcpAa1-OH | GlcNS6S(a1-4)IdoA2S(a1-4)GlcNS6S(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNS(a1-4)IdoA(a1-4)GlcNAc6S(a1-4)GlcA(a1- | α-D-GlcpN2,6S2-(1→4)-α-L-IdopA2S-(1→4)-α-D-GlcpN2,6S2-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpNAc6S-(1→4)-α-D-GlcpA-(1→ | null | WURCS=2.0/8,10,9/[a2122A-1a_1-5][a2122h-1a_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a2121A-1a_1-5][a2122h-1a_1-5_2*NSO/3=O/3=O][a2122A-1b_1-5][a2122h-1a_1-5_2*NCC/3=O][a2122h-1a_1-5_2*NSO/3=O/3=O_6*OSO/3=O/3=O][a2121A-1a_1-5_2*OSO/3=O/3=O]/1-2-3-4-5-6-5-7-8-7/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1 | DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNS[6S]a1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAc[6S]a1-4DGlcpAb1-OH | GlcNS6S(a1-4)IdoA2S(a1-4)GlcNS6S(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNS(a1-4)IdoA(a1-4)GlcNAc6S(a1-4)GlcA(b1- | null | null | null | null | null | GAG | {'BDP2-NDG3': {'2': {'phi': 74.39, 'psi': 78.76, 'strain': 2.483, 'linkage': '1-4'}, '3': {'phi': 89.49, 'psi': 90.33, 'strain': 1.896, 'linkage': '1-4'}, '4': {'phi': 102.71, 'psi': 95.19, 'strain': 4.312, 'linkage': '1-4'}, '5': {'phi': 81.32, 'psi': 100.17, 'strain': 2.218, 'linkage': '1-4'}, '6': {'phi': 64.1, 'psi... | {} | {} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00039/snfg.svg | ./torsion_data/GS00039_torsion_data.txt | {'Cluster 0': {'count': 44438, '3_2_phi_mean': 78.63, '3_2_psi_mean': -138.67, '4_3_phi_mean': -82.21, '4_3_psi_mean': 106.96, '6_4_phi_mean': 76.37, '6_4_psi_mean': -115.56, '7_6_phi_mean': -76.79, '7_6_psi_mean': 121.32, '8_7_phi_mean': 76.89, '8_7_psi_mean': -145.5, '9_8_phi_mean': -76.1, '9_8_psi_mean': 119.83, '10... | G87874MT | GS00039 | DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAc[6S]a1-4DGlcpAb1-4DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNAca1-4DGlcpAb1-OH | DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAc[6S]a1-4DGlcpAb1-4DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNAca1-4DGlcpA | GlcNS(a1-4)IdoA(a1-4)GlcNS(a1-4)GlcA(b1-4)GlcNAc6S(a1-4)GlcA(b1-4)GlcNS6S(a1-4)IdoA2S(a1-4)GlcNAc(a1-4)GlcA | α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpN2S-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc6S-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpN2,6S2-(1→4)-α-L-IdopA2S-(1→4)-α-D-GlcpNAc-(1→4)-D-GlcA | WURCS=2.0/8,10,9/[u2122A][a2122h-1a_1-5_2*NCC/3=O][a2121A-1a_1-5_2*OSO/3=O/3=O][a2122h-1a_1-5_2*NSO/3=O/3=O_6*OSO/3=O/3=O][a2122A-1b_1-5][a2122h-1a_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a2122h-1a_1-5_2*NSO/3=O/3=O][a2121A-1a_1-5]/1-2-3-4-5-6-5-7-8-7/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1 | RES,1b:b-dglc-HEX-1:5|-1:a,2b:a-dglc-HEX-1:5,3s:n-acetyl,4b:a-lido-HEX-1:5,5s:sulfate,6b:a-dglc-HEX-1:5,7b:b-dglc-HEX-1:5|-1:a,8b:a-dglc-HEX-1:5,9b:b-dglc-HEX-1:5|-1:a,10b:a-dglc-HEX-1:5,11s:n-sulfate,12b:a-lido-HEX-1:5|-1:a,13b:a-dglc-HEX-1:5,14s:n-sulfate,15s:sulfate,16s:sulfate,LIN,1:1o(4+1)2d,2:2d(2+1)3n,3:2o(4+1)4... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@@H](C(=O)O)[C@@H](O[C@H]4O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]5O[C@H](C(=O)O)[C@@H](O[C@H]6O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]7O[C@H](C(=O)O)[C@@H](O[C@H]8O[C@H](CO)[C@@H](O[C@@H]9O[C@@H](C(=O)O)[C@@H](O[C@H]%10O[C@H](CO)[C@@H](O)[C@H](O)[C@H]%10NS(=O)(=O)O)[... | null | 2,267.28 | null | GlcNS(a1-4) | {'GlcA': 3, 'GlcNS': 2, 'IdoA': 1, 'GlcNAc6S': 1, 'GlcNS6S': 1, 'IdoA2S': 1, 'GlcNAc': 1} | {'HexA': 5, 'HexN': 3, 'HexNAc': 2, 'S': 6} | 1 | 5 | 6 | 14.264393 | {'Cluster 0': 49.38, 'Cluster 1': 22.67, 'Cluster 2': 20.32, 'Cluster 3': 3.82, 'Cluster 4': 3.8} | {'Cluster 0': 43.0846, 'Cluster 1': 18.4569, 'Cluster 2': 11.976, 'Cluster 3': 8.9901, 'Cluster 4': 6.6876, 'Cluster 5': 2.6815, 'Cluster 6': 2.6337, 'Cluster 7': 0.9435, 'Cluster 8': 0.6234, 'Cluster 9': 0.5634, 'Cluster 10': 0.479, 'Cluster 11': 0.4545, 'Cluster 12': 0.4012, 'Cluster 13': 0.3656, 'Cluster 14': 0.3567... | {'2': 0.5006077454092646, '3': 0.2824447534398783, '4': 0.2747403205031346, '5': 0.26932427234100664, '6': 0.24454371605409717, '7': 0.24983816048783763, '8': 0.2353010834901989} | {'0': [0, 20], '1': [15, 19, 21, 29], '2': [2, 3, 4, 6, 9, 10, 11, 13, 14, 23, 24, 25, 26, 31, 32], '3': [8, 16, 30], '4': [1, 5, 7, 12, 17, 18, 22, 27, 28]} | {'explained_variance_ratio': [0.190842957907471, 0.0763049321217057, 0.06822696470244571, 0.057411177476513184, 0.03603182107064322, 0.030127542804146645, 0.024254464305735038, 0.022148626873282118, 0.017658748025874582, 0.015575965994350153], 'cumulative_variance': [0.190842957907471, 0.2671478900291767, 0.33537485473... | 1.5 | AMBER | GLYCAM_06j_GAG | 300 | 1 | 200 | DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAc[6S]a1-4DGlcpAb1-4DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNAca1-4DGlcpAa1-OH | GlcNS(a1-4)IdoA(a1-4)GlcNS(a1-4)GlcA(b1-4)GlcNAc6S(a1-4)GlcA(b1-4)GlcNS6S(a1-4)IdoA2S(a1-4)GlcNAc(a1-4)GlcA(a1- | α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpN2S-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc6S-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpN2,6S2-(1→4)-α-L-IdopA2S-(1→4)-α-D-GlcpNAc-(1→4)-α-D-GlcpA-(1→ | null | WURCS=2.0/8,10,9/[a2122A-1a_1-5][a2122h-1a_1-5_2*NCC/3=O][a2121A-1a_1-5_2*OSO/3=O/3=O][a2122h-1a_1-5_2*NSO/3=O/3=O_6*OSO/3=O/3=O][a2122A-1b_1-5][a2122h-1a_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a2122h-1a_1-5_2*NSO/3=O/3=O][a2121A-1a_1-5]/1-2-3-4-5-6-5-7-8-7/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1 | DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAc[6S]a1-4DGlcpAb1-4DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNAca1-4DGlcpAb1-OH | GlcNS(a1-4)IdoA(a1-4)GlcNS(a1-4)GlcA(b1-4)GlcNAc6S(a1-4)GlcA(b1-4)GlcNS6S(a1-4)IdoA2S(a1-4)GlcNAc(a1-4)GlcA(b1- | null | null | null | null | null | GAG | {'BDP2-NDG3': {'2': {'phi': 82.83, 'psi': 97.36, 'strain': 1.896, 'linkage': '1-4'}, '3': {'phi': 70.86, 'psi': 90.65, 'strain': 1.928, 'linkage': '1-4'}, '4': {'phi': 79.31, 'psi': 83.76, 'strain': 1.945, 'linkage': '1-4'}, '5': {'phi': 63.67, 'psi': 94.42, 'strain': 2.113, 'linkage': '1-4'}, '6': {'phi': 80.11, 'psi'... | {} | {} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00040/snfg.svg | ./torsion_data/GS00040_torsion_data.txt | {'Cluster 0': {'count': 38884, '3_2_phi_mean': 76.23, '3_2_psi_mean': -141.46, '4_3_phi_mean': -78.8, '4_3_psi_mean': 112.75, '5_4_phi_mean': 77.73, '5_4_psi_mean': -128.03, '6_5_phi_mean': -76.99, '6_5_psi_mean': 119.32, '7_6_phi_mean': 76.48, '7_6_psi_mean': -144.42, '8_7_phi_mean': -77.04, '8_7_psi_mean': 118.23, '9... | G87877UE | GS00040 | DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAca1-4DGlcpAb1-OH | DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAca1-4DGlcpA | GlcNS(a1-4)IdoA(a1-4)GlcNS(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNS(a1-4)IdoA(a1-4)GlcNAc(a1-4)GlcA | α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpN2S-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpNAc-(1→4)-D-GlcA | WURCS=2.0/5,10,9/[u2122A][a2122h-1a_1-5_2*NCC/3=O][a2121A-1a_1-5][a2122h-1a_1-5_2*NSO/3=O/3=O][a2122A-1b_1-5]/1-2-3-4-5-2-5-4-3-4/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1 | RES,1b:b-dglc-HEX-1:5|-1:a,2b:a-dglc-HEX-1:5,3s:n-acetyl,4b:a-lido-HEX-1:5|-1:a,5b:a-dglc-HEX-1:5,6s:n-sulfate,7b:b-dglc-HEX-1:5|-1:a,8b:a-dglc-HEX-1:5,9s:n-acetyl,10b:b-dglc-HEX-1:5|-1:a,11b:a-dglc-HEX-1:5,12s:n-sulfate,13b:a-lido-HEX-1:5|-1:a,14b:a-dglc-HEX-1:5,15s:n-sulfate,LIN,1:1o(4+1)2d,2:2d(2+1)3n,3:2o(4+1)4d,4:... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@@H](C(=O)O)[C@@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](C(=O)O)[C@@H](O[C@H]6O[C@H](CO)[C@@H](O[C@@H]7O[C@H](C(=O)O)[C@@H](O[C@H]8O[C@H](CO)[C@@H](O[C@@H]9O[C@@H](C(=O)O)[C@@H](O[C@H]%10O[C@H](CO)[C@@H](O)[C@H](O)[C@H]%10NS(=O)(=O)O)[C@H](O)[C@H]9O)[C@H]... | null | 2,027.41 | null | GlcNS(a1-4) | {'GlcNS': 3, 'GlcA': 3, 'IdoA': 2, 'GlcNAc': 2} | {'HexA': 5, 'HexN': 3, 'HexNAc': 2, 'S': 3} | 1 | 5 | 6 | 13.704902 | {'Cluster 0': 43.21, 'Cluster 1': 31.28, 'Cluster 2': 12.91, 'Cluster 3': 10.83, 'Cluster 4': 1.77} | {'Cluster 0': 42.3179, 'Cluster 1': 23.8787, 'Cluster 2': 11.1559, 'Cluster 3': 4.4184, 'Cluster 4': 4.4084, 'Cluster 5': 4.3672, 'Cluster 6': 3.3316, 'Cluster 7': 1.5569, 'Cluster 8': 1.0412, 'Cluster 9': 0.7812, 'Cluster 10': 0.6645, 'Cluster 11': 0.3678, 'Cluster 12': 0.3167, 'Cluster 13': 0.2334, 'Cluster 14': 0.18... | {'2': 0.5404357041434086, '3': 0.35089389871719073, '4': 0.23023185875817367, '5': 0.24396701513271257, '6': 0.25079647085277196, '7': 0.2570566646027742, '8': 0.2422793877385002} | {'0': [11, 13], '1': [1, 3, 6, 15, 16, 24, 25], '2': [2, 10, 14, 19, 20, 26], '3': [4, 5, 7, 8, 9, 12, 17, 18, 22, 23, 28], '4': [0, 21, 27]} | {'explained_variance_ratio': [0.2603447592889585, 0.08781123397366335, 0.05334439913943329, 0.049423602268955535, 0.035518390774922456, 0.029035154052733974, 0.02581097169158071, 0.02149128160463206, 0.01845650642096005, 0.015686937206596592], 'cumulative_variance': [0.2603447592889585, 0.34815599326262187, 0.401500392... | 1.5 | AMBER | GLYCAM_06j_GAG | 300 | 1 | 200 | DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAca1-4DGlcpAa1-OH | GlcNS(a1-4)IdoA(a1-4)GlcNS(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNS(a1-4)IdoA(a1-4)GlcNAc(a1-4)GlcA(a1- | α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpN2S-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpNAc-(1→4)-α-D-GlcpA-(1→ | null | WURCS=2.0/5,10,9/[a2122A-1a_1-5][a2122h-1a_1-5_2*NCC/3=O][a2121A-1a_1-5][a2122h-1a_1-5_2*NSO/3=O/3=O][a2122A-1b_1-5]/1-2-3-4-5-2-5-4-3-4/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1 | DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAca1-4DGlcpAb1-OH | GlcNS(a1-4)IdoA(a1-4)GlcNS(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNS(a1-4)IdoA(a1-4)GlcNAc(a1-4)GlcA(b1- | null | null | null | null | null | GAG | {'BDP2-NDG3': {'2': {'phi': 76.3, 'psi': 101.89, 'strain': 2.369, 'linkage': '1-4'}, '3': {'phi': 89.48, 'psi': 86.08, 'strain': 2.315, 'linkage': '1-4'}, '4': {'phi': 77.55, 'psi': 86.27, 'strain': 1.945, 'linkage': '1-4'}, '5': {'phi': 63.59, 'psi': 90.1, 'strain': 2.113, 'linkage': '1-4'}, '6': {'phi': 75.36, 'psi':... | {} | {} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00041/snfg.svg | ./torsion_data/GS00041_torsion_data.txt | {'Cluster 0': {'count': 12088, '3_2_phi_mean': -73.39, '3_2_psi_mean': 119.96, '3_2_phi_std': 12.4, '3_2_psi_std': 15.4}, 'Cluster 1': {'count': 8814, '3_2_phi_mean': -72.44, '3_2_psi_mean': 117.63, '3_2_phi_std': 13.95, '3_2_psi_std': 16.47}, 'Cluster 2': {'count': 7125, '3_2_phi_mean': -74.64, '3_2_psi_mean': 118.08,... | G42049JU | GS00041 | DNeup5Aca2-3DGalpb1-4DGlcpNAca1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-D-GlcNAc | WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b3-c2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3o(3+2)4d,4:4d(5+1)5n, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@H]1CO | null | 674.24 | {'motif': 'G30207PZ', 'motif_label': 'GM4'} | Neu5Ac(a2-3) | {'Neu5Ac': 1, 'Gal': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Ac': 1} | 12 | 13 | 19 | 10.001859 | {'Cluster 0': 30.22, 'Cluster 1': 22.03, 'Cluster 2': 17.81, 'Cluster 3': 17.53, 'Cluster 4': 12.41} | {'Cluster 0': 23.6726, 'Cluster 1': 23.5126, 'Cluster 2': 22.5302, 'Cluster 3': 13.1737, 'Cluster 4': 5.092, 'Cluster 5': 4.1321, 'Cluster 6': 2.8847, 'Cluster 7': 1.9223, 'Cluster 8': 1.1724, 'Cluster 9': 0.7724, 'Cluster 10': 0.5099, 'Cluster 11': 0.3025, 'Cluster 12': 0.1925, 'Cluster 13': 0.13} | {'2': 0.42622762472276665, '3': 0.4349366183523531, '4': 0.4579506955093207, '5': 0.35571270054854387, '6': 0.3713007879224341, '7': 0.3751226860651342, '8': 0.37550806841140827} | {'0': [4, 13], '1': [2, 8], '2': [0, 1, 3, 5, 6, 7, 11, 12], '3': [9], '4': [10]} | {'explained_variance_ratio': [0.17728675866773522, 0.12579013568579783, 0.08009064021636872, 0.04114975322794027, 0.03713107784239012, 0.036123183099182395, 0.030686302144130775, 0.024003999161537334, 0.022947385600037996, 0.020304283011719274], 'cumulative_variance': [0.17728675866773522, 0.303076894353533, 0.38316753... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-α-D-GlcpNAc-(1→ | G23094JF | WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b3-c2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→ | G00065MO | WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b3-c2 | null | null | null | {'NDG2-GAL3': {'2': {'phi': -82.95, 'psi': 128.06, 'strain': 0.775, 'linkage': '1-4'}, '3': {'phi': -68.64, 'psi': 120.0, 'strain': 0.031, 'linkage': '1-4'}, '4': {'phi': -77.4, 'psi': 117.04, 'strain': -0.0, 'linkage': '1-4'}, '5': {'phi': -77.16, 'psi': 131.95, 'strain': 0.282, 'linkage': '1-4'}, '6': {'phi': -84.39,... | {'NDG2-GAL3': {'2': {'phi': -82.95, 'psi': 128.06, 'strain': 0.775, 'linkage': '1-4'}, '3': {'phi': -68.6, 'psi': 120.03, 'strain': 0.031, 'linkage': '1-4'}, '4': {'phi': -77.4, 'psi': 117.05, 'strain': -0.0, 'linkage': '1-4'}, '5': {'phi': -77.11, 'psi': 131.88, 'strain': 0.282, 'linkage': '1-4'}, '6': {'phi': -84.4, ... | {'NDG2-GAL3': {'2': {'phi': -82.95, 'psi': 128.06, 'strain': 0.775, 'linkage': '1-4'}, '3': {'phi': -68.64, 'psi': 120.0, 'strain': 0.031, 'linkage': '1-4'}, '4': {'phi': -77.4, 'psi': 117.04, 'strain': -0.0, 'linkage': '1-4'}, '5': {'phi': -77.16, 'psi': 131.95, 'strain': 0.282, 'linkage': '1-4'}, '6': {'phi': -84.39,... | {'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G42049JU'}]};{'taxon_id': '10114', 'taxon_label': 'Rattus', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G42049JU'}]};{'ta... | 3 | {'taxid': 10029, 'name': 'Cricetulus griseus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G00065MO', 'url': 'https://www.glygen.org/glycan/G00065MO'}], 'common_name': 'Chinese hamster', 'glygen_name': 'Hamster', 'reference_species': 'Cricetulus griseus [10029]'};{'taxid': 9606... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491851752', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491851752', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '701', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '14192', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+14192', 'database': 'Car... | 856.44 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(1)Hex(1)NeuAc(1) % 674.23817744 | freeEnd--?D-GlcNAc--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G02073FK', 'relationship': 'ancestor'};{'related_accession': 'G15791QL', 'relationship': 'ancestor'};{'related_accession': 'G17015OC', 'relationship': 'ancestor'};{'related_accession': 'G22312GP', 'relationship': 'ancestor'};{'related_accession': 'G24898CY', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00042/snfg.svg | ./torsion_data/GS00042_torsion_data.txt | {'Cluster 0': {'count': 9414, '5_2_phi_mean': -68.16, '5_2_psi_mean': -99.77, '3_2_phi_mean': -69.89, '3_2_psi_mean': 135.93, '4_3_phi_mean': -68.96, '4_3_psi_mean': 137.39, '5_2_phi_std': 7.51, '5_2_psi_std': 6.58, '3_2_phi_std': 5.95, '3_2_psi_std': 6.14, '4_3_phi_std': 6.53, '4_3_psi_std': 6.75}, 'Cluster 1': {'coun... | G93507IP | GS00042 | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-OH | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAc | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc | α-L-Fucp-(1→2)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-D-GlcNAc | WURCS=2.0/3,4,3/[u2122h_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-3/a3-b1_a4-d1_b2-c1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-lgal-HEX-1:5|6:d,5b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(2+1)4d,4:1o(4+1)5d, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@H]1CO | null | 675.26 | null | Fuc(a1-2);Fuc(a1-4) | {'Fuc': 2, 'Gal': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'dHex': 2} | 9 | 12 | 19 | 10.253943 | {'Cluster 0': 31.38, 'Cluster 1': 27.67, 'Cluster 2': 27.17, 'Cluster 3': 11.82, 'Cluster 4': 1.97} | {'Cluster 0': 89.6644, 'Cluster 1': 2.8764, 'Cluster 2': 2.5731, 'Cluster 3': 2.2031, 'Cluster 4': 1.4965, 'Cluster 5': 0.29, 'Cluster 6': 0.2433, 'Cluster 7': 0.2, 'Cluster 8': 0.1866, 'Cluster 9': 0.0633, 'Cluster 10': 0.0533, 'Cluster 11': 0.05, 'Cluster 12': 0.0433, 'Cluster 13': 0.0333, 'Cluster 14': 0.0233} | {'2': 0.6987914643692963, '3': 0.291783174066333, '4': 0.22525967520080883, '5': 0.2304506722136114, '6': 0.21190728837729794, '7': 0.23017456733032546, '8': 0.2153570519218712} | {'0': [0], '1': [8], '2': [14], '3': [1, 2, 3, 7, 11, 13], '4': [4, 5, 6, 9, 10, 12]} | {'explained_variance_ratio': [0.11480769072414891, 0.09071591405425372, 0.06728448144797058, 0.05364280715198159, 0.041008309745259146, 0.03321167351056575, 0.030270116286609604, 0.029199705481647114, 0.02714391901339854, 0.02651652350320527], 'cumulative_variance': [0.11480769072414891, 0.20552360477840265, 0.27280808... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAca1-OH | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-α-D-GlcpNAc-(1→ | G92795ML | WURCS=2.0/3,4,3/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-3/a3-b1_a4-d1_b2-c1 | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-OH | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→ | G00048MO | WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-3/a3-b1_a4-d1_b2-c1 | null | null | null | {'GAL3-FUC4': {'2': {'phi': -74.15, 'psi': 144.65, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -72.97, 'psi': 132.4, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -69.58, 'psi': 138.57, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -77.6, 'psi': 142.42, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -75.5,... | {'GAL3-FUC4': {'2': {'phi': -74.15, 'psi': 144.65, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -72.97, 'psi': 132.38, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -69.64, 'psi': 138.56, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -77.61, 'psi': 142.41, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -75.... | {'GAL3-FUC4': {'2': {'phi': -74.15, 'psi': 144.65, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -72.97, 'psi': 132.4, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -69.58, 'psi': 138.57, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -77.6, 'psi': 142.42, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -75.5,... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G93507IP'}]};{'taxon_id': '210', 'taxon_label': 'Helicobacter pylori', 'evidence': [{'label': 'GlyTouCan(bcsdb)', 'id': 'glytoucan.org/Structures/Glycans/G93507IP'}, {'labe... | 4 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G93507IP', 'url': 'https://glycosmos.org/glycans/show/G93507IP'}, {'database': 'Subsumption', 'id': 'G00048MO', 'url': 'https://www.glygen.org/glycan/G00048MO'}], 'common_name': 'Human', 'glygen_name': '... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491868073', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491868073', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '2414', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '11664', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+11664', 'database': 'Ca... | 843.45 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(1)Hex(1)dHex(2) % 675.258578545 | freeEnd--?D-GlcNAc(--3b1D-Gal,p--2a1L-Fuc,p)--4a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000020', 'name': 'Lewis a', 'synonym': 'Le^a; Lea', 'keywords': 'Lewis a'};{'id': 'GGM.000021', 'name': 'Lewis b', 'synonym': 'Le^b; Leb', 'keywords': 'Lewis b'};{'id': 'GGM.000042', 'name': 'Blo... | {'related_accession': 'G16520IL', 'relationship': 'ancestor'};{'related_accession': 'G17991UN', 'relationship': 'ancestor'};{'related_accession': 'G22979OY', 'relationship': 'ancestor'};{'related_accession': 'G36592JW', 'relationship': 'ancestor'};{'related_accession': 'G57824FG', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00043/snfg.svg | ./torsion_data/GS00043_torsion_data.txt | {'Cluster 0': {'count': 10403, '3_2_phi_mean': -64.4, '3_2_psi_mean': -89.67, '5_3_phi_mean': 60.44, '5_3_psi_mean': 68.89, '4_3_phi_mean': -63.62, '4_3_psi_mean': 144.48, '3_2_phi_std': 8.36, '3_2_psi_std': 9.15, '5_3_phi_std': 9.27, '5_3_psi_std': 9.61, '4_3_phi_std': 7.96, '4_3_psi_std': 7.85}, 'Cluster 1': {'count'... | G75694CL | GS00043 | LFucpa1-2[DGalpa1-3]DGalpb1-4DGalpNAca1-OH | LFucpa1-2[DGalpa1-3]DGalpb1-4DGalpNAc | Fuc(a1-2)[Gal(a1-3)]Gal(b1-4)GalNAc | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→4)-D-GalNAc | WURCS=2.0/4,4,3/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-4/a4-b1_b2-c1_b3-d1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-lgal-HEX-1:5|6:d,5b:a-dgal-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3o(2+1)4d,4:3o(3+1)5d, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H]2O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H]1CO | null | 691.25 | null | Fuc(a1-2);Gal(a1-3) | {'Gal': 2, 'Fuc': 1, 'GalNAc': 1} | {'Hex': 2, 'HexNAc': 1, 'dHex': 1} | 1 | 5 | 6 | 8.994018 | {'Cluster 0': 34.67, 'Cluster 1': 25.74, 'Cluster 2': 15.87, 'Cluster 3': 13.73, 'Cluster 4': 9.99} | {'Cluster 0': 53.9313, 'Cluster 1': 13.9119, 'Cluster 2': 11.0122, 'Cluster 3': 6.536, 'Cluster 4': 4.3329, 'Cluster 5': 3.8463, 'Cluster 6': 2.3164, 'Cluster 7': 1.7665, 'Cluster 8': 1.1599, 'Cluster 9': 0.8566, 'Cluster 10': 0.33} | {'2': 0.7600211362448992, '3': 0.37111766081021713, '4': 0.427319012757326, '5': 0.3830604786870321, '6': 0.33717411080594234, '7': 0.36373664668036154, '8': 0.35793053145166953} | {'0': [9], '1': [2, 4, 6], '2': [0], '3': [1, 5, 7], '4': [3, 8, 10]} | {'explained_variance_ratio': [0.3376134689780753, 0.08501240174283146, 0.054919432262303274, 0.03494501518221526, 0.03255563199281699, 0.021603578377699585, 0.019003362422295018, 0.017320171901434284, 0.01672817669387721, 0.01412619000569127], 'cumulative_variance': [0.3376134689780753, 0.4226258707209068, 0.4775453029... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-2[DGalpa1-3]DGalpb1-4DGalpNAca1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1-4)GalNAc(a1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→4)-α-D-GalpNAc-(1→ | G09236AJ | WURCS=2.0/4,4,3/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-4/a4-b1_b2-c1_b3-d1 | LFucpa1-2[DGalpa1-3]DGalpb1-4DGalpNAcb1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1-4)GalNAc(b1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→4)-β-D-GalpNAc-(1→ | G04847LU | WURCS=2.0/4,4,3/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-4/a4-b1_b2-c1_b3-d1 | null | null | null | {'GAL3-FUC4': {'2': {'phi': -61.04, 'psi': 137.9, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -64.12, 'psi': 138.76, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -62.11, 'psi': 141.17, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -58.73, 'psi': 144.72, 'strain': 1.49, 'linkage': '1-2'}, '6': {'phi': -56.96... | {'GAL3-FUC4': {'2': {'phi': -61.04, 'psi': 137.9, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -64.14, 'psi': 138.69, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -62.08, 'psi': 141.17, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -58.74, 'psi': 144.7, 'strain': 1.49, 'linkage': '1-2'}, '6': {'phi': -57.01,... | {'GAL3-FUC4': {'2': {'phi': -61.04, 'psi': 137.9, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -64.12, 'psi': 138.76, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -62.11, 'psi': 141.17, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -58.73, 'psi': 144.72, 'strain': 1.49, 'linkage': '1-2'}, '6': {'phi': -56.96... | null | 4 | null | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': 'G75694CL', 'url': 'https://glytoucan.org/Structures/Glycans/G75694CL', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G75694CL', 'url': 'https://gnome.glyomics.org/restrictions/GlyGen.StructureBrowser.html?focus=G75694CL', 'database': 'GNOme', 'categories': ['Ontology and Dictionary', 'Glycomics'... | 873.46 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(1)Hex(2)dHex(1) % 691.253493175 | freeEnd--?D-GalNAc--4b1D-Gal,p(--2a1L-Fuc,p)--3a1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000015', 'name': 'a-Gal antigen', 'synonym': 'alpha-Gal antigen'} | {'related_accession': 'G06999WI', 'relationship': 'ancestor'};{'related_accession': 'G11235SR', 'relationship': 'ancestor'};{'related_accession': 'G47718YD', 'relationship': 'ancestor'};{'related_accession': 'G55091DF', 'relationship': 'ancestor'};{'related_accession': 'G55799EI', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00044/snfg.svg | ./torsion_data/GS00044_torsion_data.txt | {'Cluster 0': {'count': 10310, '3_2_phi_mean': -75.25, '3_2_psi_mean': 113.71, '4_3_phi_mean': -81.84, '4_3_psi_mean': 82.06, '6_4_phi_mean': -67.2, '6_4_psi_mean': -108.53, '5_4_phi_mean': -69.65, '5_4_psi_mean': 140.79, '7_6_phi_mean': -80.93, '7_6_psi_mean': 138.29, '10_7_phi_mean': -66.93, '10_7_psi_mean': -99.87, ... | G61394ZF | GS00044 | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAc[6S]b1-3DGalpb1-4DGlcpa1-OH | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAc[6S]b1-3DGalpb1-4DGlcp | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc6S(b1-3)Gal(b1-4)Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc6S-(1→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/5,9,8/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-5-2-4-4/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1_f4-i1_g2-h1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4b:a-lgal-HEX-1:5|6:d,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:b-dgal-HEX-1:5,9b:a-lgal-HEX-1:5|6:d,10b:a-lgal-HEX-1:5|6:d,11s:sulfate,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3o(3+1)4d,4:3o(4+1)5d,5:5o(3+1)6d,6:6d(2+1)7n,7:6o(3+1)8d,8:8o(2+1)9d,9:6o(4+1)10d,10:3... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O[C@@H]7O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]7O)[C@H]5NC(C)=O)[C@H]4O)[C@H](O[C... | null | 1,590.51 | {'motif': 'G00294TN', 'motif_label': 'Blood group H (type 1)'};{'motif': 'G39211DH', 'motif_label': 'Lewis b'};{'motif': 'G39211DH', 'motif_label': 'Leb'} | Fuc(a1-3);Fuc(a1-2);Fuc(a1-4) | {'Fuc': 3, 'Gal': 3, 'GlcNAc': 1, 'GlcNAc6S': 1, 'Glc': 1} | {'Hex': 4, 'HexNAc': 2, 'dHex': 3, 'S': 1} | 26 | 26 | 46 | 13.377985 | {'Cluster 0': 34.36, 'Cluster 1': 23.09, 'Cluster 2': 21.74, 'Cluster 3': 14.26, 'Cluster 4': 6.54} | {'Cluster 0': 17.7482, 'Cluster 1': 14.6352, 'Cluster 2': 13.8453, 'Cluster 3': 13.112, 'Cluster 4': 8.9658, 'Cluster 5': 8.4625, 'Cluster 6': 7.0093, 'Cluster 7': 5.9494, 'Cluster 8': 1.7532, 'Cluster 9': 1.5898, 'Cluster 10': 1.4165, 'Cluster 11': 1.1865, 'Cluster 12': 1.0332, 'Cluster 13': 0.8333, 'Cluster 14': 0.66... | {'2': 0.31947137685110927, '3': 0.2204656915781557, '4': 0.15310754686312772, '5': 0.24760486038675317, '6': 0.22662620431314437, '7': 0.20869435454561475, '8': 0.19563608597323823} | {'0': [5, 9, 14, 16, 20, 22, 25], '1': [1, 2, 3, 15, 24], '2': [8, 12], '3': [7, 10, 13, 19], '4': [0, 4, 6, 11, 17, 18, 21, 23, 26]} | {'explained_variance_ratio': [0.15490520573200156, 0.08602737427652038, 0.06648969901964537, 0.0618676998261386, 0.04925858255475334, 0.03304207921880968, 0.02918867704613097, 0.025292467870604834, 0.022475505829264594, 0.021997919784492094], 'cumulative_variance': [0.15490520573200156, 0.24093258000852194, 0.307422279... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAc[6S]b1-3DGalpb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc6S(b1-3)Gal(b1-4)Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc6S-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G71880TG | WURCS=2.0/5,9,8/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-5-2-4-4/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1_f4-i1_g2-h1 | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAc[6S]b1-3DGalpb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc6S(b1-3)Gal(b1-4)Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc6S-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G27399KC | WURCS=2.0/5,9,8/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-5-2-4-4/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1_f4-i1_g2-h1 | null | null | null | {'GAL8-FUC9': {'2': {'phi': -65.69, 'psi': 137.01, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -68.16, 'psi': 134.3, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -71.81, 'psi': 127.07, 'strain': 1.159, 'linkage': '1-2'}, '5': {'phi': -64.55, 'psi': 132.12, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -76.2... | {'GAL8-FUC9': {'2': {'phi': -65.69, 'psi': 137.01, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -68.13, 'psi': 134.32, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -71.83, 'psi': 127.11, 'strain': 1.159, 'linkage': '1-2'}, '5': {'phi': -64.5, 'psi': 132.09, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -76.2... | {'GAL8-FUC9': {'2': {'phi': -65.69, 'psi': 137.01, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -68.16, 'psi': 134.3, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -71.81, 'psi': 127.07, 'strain': 1.159, 'linkage': '1-2'}, '5': {'phi': -64.55, 'psi': 132.12, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -76.2... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00045/snfg.svg | ./torsion_data/GS00045_torsion_data.txt | {'Cluster 0': {'count': 11515, '3_2_phi_mean': 80.37, '3_2_psi_mean': -122.64, '4_3_phi_mean': 100.28, '4_3_psi_mean': -102.05, '5_4_phi_mean': -70.2, '5_4_psi_mean': 143.21, '6_5_phi_mean': -59.68, '6_5_psi_mean': -78.74, '7_6_phi_mean': 61.72, '7_6_psi_mean': -146.3, '8_7_phi_mean': 142.92, '8_7_psi_mean': -96.97, '9... | G97221WN | GS00045 | LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-3LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-3LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-3LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-OH | LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-3LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-3LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-3LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhap | Rha(a1-2)Gal(a1-3)GlcNAc(a1-3)Rha(a1-3)Rha(a1-2)Gal(a1-3)GlcNAc(a1-3)Rha(a1-3)Rha(a1-2)Gal(a1-3)GlcNAc(a1-3)Rha(a1-3)Rha(a1-2)Gal(a1-3)GlcNAc(a1-3)Rha | α-L-Rhap-(1→2)-α-D-Galp-(1→3)-α-D-GlcpNAc-(1→3)-α-L-Rhap-(1→3)-α-L-Rhap-(1→2)-α-D-Galp-(1→3)-α-D-GlcpNAc-(1→3)-α-L-Rhap-(1→3)-α-L-Rhap-(1→2)-α-D-Galp-(1→3)-α-D-GlcpNAc-(1→3)-α-L-Rhap-(1→3)-α-L-Rhap-(1→2)-α-D-Galp-(1→3)-α-D-GlcpNAc-(1→3)-L-Rha | WURCS=2.0/4,16,15/[u2211m][a2122h-1a_1-5_2*NCC/3=O][a2112h-1a_1-5][a2211m-1a_1-5]/1-2-3-4-4-2-3-4-4-2-3-4-4-2-3-4/a3-b1_b3-c1_c2-d1_d3-e1_e3-f1_f3-g1_g2-h1_h3-i1_i3-j1_j3-k1_k2-l1_l3-m1_m3-n1_n3-o1_o2-p1 | RES,1b:x-lman-HEX-1:5|6:d,2b:a-dglc-HEX-1:5,3s:n-acetyl,4b:a-dgal-HEX-1:5,5b:a-lman-HEX-1:5|6:d,6b:a-lman-HEX-1:5|6:d,7b:a-dglc-HEX-1:5,8s:n-acetyl,9b:a-dgal-HEX-1:5,10b:a-lman-HEX-1:5|6:d,11b:a-lman-HEX-1:5|6:d,12b:a-dglc-HEX-1:5,13s:n-acetyl,14b:a-dgal-HEX-1:5,15b:a-lman-HEX-1:5|6:d,16b:a-lman-HEX-1:5|6:d,17b:a-dglc-... | O1C(O)[C@H](O)[C@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O[C@@H]4O[C@@H](C)[C@H](O)[C@@H](O[C@@H]5O[C@@H](C)[C@H](O)[C@@H](O[C@H]6O[C@H](CO)[C@@H](O)[C@H](O[C@H]7O[C@H](CO)[C@H](O)[C@H](O)[C@H]7O[C@@H]8O[C@@H](C)[C@H](O)[C@@H](O[C@@H]9O[C@@H](C)[C@H](O)[C@@H](O[C@H]%10O[C@H](CO)[C@@H](... | null | 2,647 | null | Rha(a1-2) | {'Rha': 8, 'Gal': 4, 'GlcNAc': 4} | {'Hex': 4, 'HexNAc': 4, 'dHex': 8} | 1 | 5 | 6 | 12.654907 | {'Cluster 0': 38.38, 'Cluster 1': 20.79, 'Cluster 2': 17.54, 'Cluster 3': 11.91, 'Cluster 4': 11.39} | {'Cluster 0': 42.5757, 'Cluster 1': 17.2049, 'Cluster 2': 12.8187, 'Cluster 3': 10.0223, 'Cluster 4': 4.8795, 'Cluster 5': 2.7497, 'Cluster 6': 2.0865, 'Cluster 7': 1.6965, 'Cluster 8': 1.1099, 'Cluster 9': 0.9899, 'Cluster 10': 0.8233, 'Cluster 11': 0.7133, 'Cluster 12': 0.4666, 'Cluster 13': 0.4133, 'Cluster 14': 0.3... | {'2': 0.5243583718331707, '3': 0.5603833497233873, '4': 0.39533493296751904, '5': 0.40259202930788407, '6': 0.4506040828315378, '7': 0.46276559542391277, '8': 0.43252281707893386} | {'0': [16, 19], '1': [4, 10], '2': [1, 2, 3, 5, 6, 8, 9, 11, 12, 13, 14, 15, 17, 18, 20, 21, 22, 23], '3': [0], '4': [7]} | {'explained_variance_ratio': [0.28182830163418593, 0.20327682994797328, 0.0819920782368013, 0.043566403944426936, 0.028311244240028826, 0.020479145863675226, 0.019801292703430146, 0.017622588181917382, 0.01445079047901598, 0.011083429847546154], 'cumulative_variance': [0.28182830163418593, 0.4851051315821592, 0.5670972... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-3LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-3LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-3LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-OH | Rha(a1-2)Gal(a1-3)GlcNAc(a1-3)Rha(a1-3)Rha(a1-2)Gal(a1-3)GlcNAc(a1-3)Rha(a1-3)Rha(a1-2)Gal(a1-3)GlcNAc(a1-3)Rha(a1-3)Rha(a1-2)Gal(a1-3)GlcNAc(a1-3)Rha(a1- | α-L-Rhap-(1→2)-α-D-Galp-(1→3)-α-D-GlcpNAc-(1→3)-α-L-Rhap-(1→3)-α-L-Rhap-(1→2)-α-D-Galp-(1→3)-α-D-GlcpNAc-(1→3)-α-L-Rhap-(1→3)-α-L-Rhap-(1→2)-α-D-Galp-(1→3)-α-D-GlcpNAc-(1→3)-α-L-Rhap-(1→3)-α-L-Rhap-(1→2)-α-D-Galp-(1→3)-α-D-GlcpNAc-(1→3)-α-L-Rhap-(1→ | G67510HC | WURCS=2.0/3,16,15/[a2211m-1a_1-5][a2122h-1a_1-5_2*NCC/3=O][a2112h-1a_1-5]/1-2-3-1-1-2-3-1-1-2-3-1-1-2-3-1/a3-b1_b3-c1_c2-d1_d3-e1_e3-f1_f3-g1_g2-h1_h3-i1_i3-j1_j3-k1_k2-l1_l3-m1_m3-n1_n3-o1_o2-p1 | LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-3LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-3LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapa1-3LRhapa1-2DGalpa1-3DGlcpNAca1-3LRhapb1-OH | Rha(a1-2)Gal(a1-3)GlcNAc(a1-3)Rha(a1-3)Rha(a1-2)Gal(a1-3)GlcNAc(a1-3)Rha(a1-3)Rha(a1-2)Gal(a1-3)GlcNAc(a1-3)Rha(a1-3)Rha(a1-2)Gal(a1-3)GlcNAc(a1-3)Rha(b1- | α-L-Rhap-(1→2)-α-D-Galp-(1→3)-α-D-GlcpNAc-(1→3)-α-L-Rhap-(1→3)-α-L-Rhap-(1→2)-α-D-Galp-(1→3)-α-D-GlcpNAc-(1→3)-α-L-Rhap-(1→3)-α-L-Rhap-(1→2)-α-D-Galp-(1→3)-α-D-GlcpNAc-(1→3)-α-L-Rhap-(1→3)-α-L-Rhap-(1→2)-α-D-Galp-(1→3)-α-D-GlcpNAc-(1→3)-β-L-Rhap-(1→ | G74265OP | WURCS=2.0/4,16,15/[a2211m-1b_1-5][a2122h-1a_1-5_2*NCC/3=O][a2112h-1a_1-5][a2211m-1a_1-5]/1-2-3-4-4-2-3-4-4-2-3-4-4-2-3-4/a3-b1_b3-c1_c2-d1_d3-e1_e3-f1_f3-g1_g2-h1_h3-i1_i3-j1_j3-k1_k2-l1_l3-m1_m3-n1_n3-o1_o2-p1 | null | null | null | {'GLA4-RAM5': {'2': {'phi': -71.76, 'psi': 147.22, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -59.27, 'psi': 152.36, 'strain': 2.153, 'linkage': '1-2'}, '4': {'phi': -57.99, 'psi': 118.6, 'strain': 2.236, 'linkage': '1-2'}, '5': {'phi': -63.29, 'psi': 111.8, 'strain': 1.886, 'linkage': '1-2'}, '6': {'phi': -75.9,... | {'GLA4-RAM5': {'2': {'phi': -71.76, 'psi': 147.22, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -59.28, 'psi': 152.36, 'strain': 2.153, 'linkage': '1-2'}, '4': {'phi': -57.98, 'psi': 118.55, 'strain': 2.236, 'linkage': '1-2'}, '5': {'phi': -63.22, 'psi': 111.8, 'strain': 1.886, 'linkage': '1-2'}, '6': {'phi': -75.8... | {'GLA4-RAM5': {'2': {'phi': -71.76, 'psi': 147.22, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -59.27, 'psi': 152.36, 'strain': 2.153, 'linkage': '1-2'}, '4': {'phi': -57.99, 'psi': 118.6, 'strain': 2.236, 'linkage': '1-2'}, '5': {'phi': -63.29, 'psi': 111.8, 'strain': 1.886, 'linkage': '1-2'}, '6': {'phi': -75.9,... | {'taxon_id': '984897', 'taxon_label': 'Shigella dysenteriae 1', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G97221WN'}]} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00046/snfg.svg | ./torsion_data/GS00046_torsion_data.txt | {'Cluster 0': {'count': 13937, '3_2_phi_mean': -74.06, '3_2_psi_mean': 119.55, '3_2_phi_std': 13.79, '3_2_psi_std': 16.82}, 'Cluster 1': {'count': 10264, '3_2_phi_mean': -75.43, '3_2_psi_mean': 121.28, '3_2_phi_std': 13.82, '3_2_psi_std': 15.99}, 'Cluster 2': {'count': 7323, '3_2_phi_mean': -75.38, '3_2_psi_mean': 117.... | G73559DL | GS00046 | DNeup5Gca2-3DGalpb1-4DGlcpNAca1-OH | DNeup5Gca2-3DGalpb1-4DGlcpNAc | Neu5Gc(a2-3)Gal(b1-4)GlcNAc | α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)-D-GlcNAc | WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3/a4-b1_b3-c2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-glycolyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3o(3+2)4d,4:4d(5+1)5n, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(=O)CO)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@H]1CO | null | 690.23 | null | Neu5Gc(a2-3) | {'Neu5Gc': 1, 'Gal': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Gc': 1} | 13 | 14 | 20 | 10.109497 | {'Cluster 0': 34.84, 'Cluster 1': 25.66, 'Cluster 2': 18.31, 'Cluster 3': 12.36, 'Cluster 4': 8.84} | {'Cluster 0': 30.197, 'Cluster 1': 25.6799, 'Cluster 2': 20.9179, 'Cluster 3': 6.0294, 'Cluster 4': 5.067, 'Cluster 5': 4.5545, 'Cluster 6': 2.1073, 'Cluster 7': 1.6423, 'Cluster 8': 1.3299, 'Cluster 9': 1.2799, 'Cluster 10': 0.7824, 'Cluster 11': 0.2025, 'Cluster 12': 0.16, 'Cluster 13': 0.05} | {'2': 0.33521657099657926, '3': 0.36638469928285716, '4': 0.40664510173335483, '5': 0.4647808882510086, '6': 0.4639662383423318, '7': 0.3730779476853948, '8': 0.3830513713741559} | {'0': [11], '1': [2, 6, 12], '2': [4, 8], '3': [0], '4': [1, 3, 5, 7, 9, 10, 13]} | {'explained_variance_ratio': [0.14791462485541956, 0.14042901758952964, 0.10087858183414065, 0.04986011416593439, 0.03889255147387461, 0.03770576448219058, 0.03682031182253596, 0.02672748008117583, 0.023318124321793875, 0.02132604315209781], 'cumulative_variance': [0.14791462485541956, 0.2883436424449492, 0.38922222427... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Gca2-3DGalpb1-4DGlcpNAca1-OH | Neu5Gc(a2-3)Gal(b1-4)GlcNAc(a1- | α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)-α-D-GlcpNAc-(1→ | G31932HA | WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3/a4-b1_b3-c2 | DNeup5Gca2-3DGalpb1-4DGlcpNAcb1-OH | Neu5Gc(a2-3)Gal(b1-4)GlcNAc(b1- | α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→ | G08169IN | WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3/a4-b1_b3-c2 | null | null | null | {'NDG2-GAL3': {'2': {'phi': -72.07, 'psi': 128.81, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -81.36, 'psi': 127.74, 'strain': 0.775, 'linkage': '1-4'}, '4': {'phi': -71.41, 'psi': 132.13, 'strain': 0.282, 'linkage': '1-4'}, '5': {'phi': -72.99, 'psi': -53.43, 'strain': 1.856, 'linkage': '1-4'}, '6': {'phi': -69.... | {'NDG2-GAL3': {'2': {'phi': -72.07, 'psi': 128.81, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -81.37, 'psi': 127.8, 'strain': 0.775, 'linkage': '1-4'}, '4': {'phi': -71.4, 'psi': 132.07, 'strain': 0.282, 'linkage': '1-4'}, '5': {'phi': -72.93, 'psi': -53.46, 'strain': 1.856, 'linkage': '1-4'}, '6': {'phi': -69.69... | {'NDG2-GAL3': {'2': {'phi': -72.07, 'psi': 128.81, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -81.36, 'psi': 127.74, 'strain': 0.775, 'linkage': '1-4'}, '4': {'phi': -71.41, 'psi': 132.13, 'strain': 0.282, 'linkage': '1-4'}, '5': {'phi': -72.99, 'psi': -53.43, 'strain': 1.856, 'linkage': '1-4'}, '6': {'phi': -69.... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00047/snfg.svg | ./torsion_data/GS00047_torsion_data.txt | {'Cluster 0': {'count': 9423, '4_2_phi_mean': -71.09, '4_2_psi_mean': -105.38, '3_2_phi_mean': -67.42, '3_2_psi_mean': 141.74, '5_4_phi_mean': -66.07, '5_4_psi_mean': 139.19, '4_2_phi_std': 6.54, '4_2_psi_std': 6.48, '3_2_phi_std': 7.41, '3_2_psi_std': 6.53, '5_4_phi_std': 7.22, '5_4_psi_std': 8.15}, 'Cluster 1': {'cou... | G04690JX | GS00047 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-OH | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAc | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-D-GlcNAc | WURCS=2.0/3,4,3/[u2122h_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-2/a3-b1_a4-c1_c2-d1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:a-lgal-HEX-1:5|6:d,4b:b-dgal-HEX-1:5,5b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:1o(4+1)4d,4:4o(2+1)5d, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H]1CO | null | 675.26 | null | Fuc(a1-3);Fuc(a1-2) | {'Fuc': 2, 'Gal': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'dHex': 2} | 9 | 12 | 19 | 10.902937 | {'Cluster 0': 31.41, 'Cluster 1': 24.86, 'Cluster 2': 21.04, 'Cluster 3': 17.3, 'Cluster 4': 5.39} | {'Cluster 0': 56.2844, 'Cluster 1': 13.2987, 'Cluster 2': 10.6189, 'Cluster 3': 7.4326, 'Cluster 4': 2.3898, 'Cluster 5': 2.2364, 'Cluster 6': 2.1964, 'Cluster 7': 1.8831, 'Cluster 8': 1.8631, 'Cluster 9': 0.6866, 'Cluster 10': 0.2766, 'Cluster 11': 0.25, 'Cluster 12': 0.19, 'Cluster 13': 0.1567, 'Cluster 14': 0.1567, ... | {'2': 0.37620732733909246, '3': 0.23865146941798449, '4': 0.2219175422359, '5': 0.21904413595825625, '6': 0.21282853913647004, '7': 0.20878952478193688, '8': 0.2069387348208224} | {'0': [1, 4, 12], '1': [6, 15], '2': [3, 8, 16], '3': [2, 7, 10], '4': [0, 5, 9, 11, 13, 14]} | {'explained_variance_ratio': [0.11853650285881334, 0.09925902041870371, 0.06150475179492393, 0.04935918646327947, 0.042845738249014505, 0.036638181980623435, 0.033073914063901144, 0.0318332259195892, 0.02538904008166762, 0.02482613764448654], 'cumulative_variance': [0.11853650285881334, 0.21779552327751706, 0.279300275... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAca1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-α-D-GlcpNAc-(1→ | G82236PZ | WURCS=2.0/3,4,3/[a2122h-1a_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-2/a3-b1_a4-c1_c2-d1 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→ | G00052MO | WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-2/a3-b1_a4-c1_c2-d1 | null | null | null | {'GAL4-FUC5': {'2': {'phi': -67.99, 'psi': 140.47, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -62.57, 'psi': 141.01, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -71.99, 'psi': 146.5, 'strain': 0.496, 'linkage': '1-2'}, '5': {'phi': -66.7, 'psi': 138.4, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -103.29... | {'GAL4-FUC5': {'2': {'phi': -67.99, 'psi': 140.47, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -62.6, 'psi': 140.99, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -72.03, 'psi': 146.51, 'strain': 0.496, 'linkage': '1-2'}, '5': {'phi': -66.7, 'psi': 138.43, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -103.3... | {'GAL4-FUC5': {'2': {'phi': -67.99, 'psi': 140.47, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -62.57, 'psi': 141.01, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -71.99, 'psi': 146.5, 'strain': 0.496, 'linkage': '1-2'}, '5': {'phi': -66.7, 'psi': 138.4, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -103.29... | {'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G04690JX'}]};{'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G046... | 4 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G00052MO', 'url': 'https://www.glygen.org/glycan/G00052MO'}], 'common_name': 'Bovine', 'glygen_name': 'Bovine', 'reference_species': 'Bos taurus [9913]'};{'taxid': 9606, 'name': 'Homo sapiens', 'a... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491839699', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491839699', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '2611', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10641', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+10641', 'database': 'Ca... | 843.45 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(1)Hex(1)dHex(2) % 675.258578545 | freeEnd--?D-GlcNAc(--3a1L-Fuc,p)--4b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000019', 'name': 'Lewis y', 'synonym': 'Le^y; Ley', 'keywords': 'L... | {'related_accession': 'G16520IL', 'relationship': 'ancestor'};{'related_accession': 'G17991UN', 'relationship': 'ancestor'};{'related_accession': 'G18219LU', 'relationship': 'ancestor'};{'related_accession': 'G22979OY', 'relationship': 'ancestor'};{'related_accession': 'G23571FL', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00048/snfg.svg | ./torsion_data/GS00048_torsion_data.txt | {'Cluster 0': {'count': 8391, '3_2_phi_mean': -75.37, '3_2_psi_mean': -132.34, '4_3_phi_mean': -73.44, '4_3_psi_mean': -118.71, '3_2_phi_std': 15.21, '3_2_psi_std': 53.08, '4_3_phi_std': 13.28, '4_3_psi_std': 22.25}, 'Cluster 1': {'count': 7795, '3_2_phi_mean': -73.8, '3_2_psi_mean': -128.37, '4_3_phi_mean': -72.61, '4... | G68806LA | GS00048 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpNAca1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)GalNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-D-GalNAc | WURCS=2.0/4,4,3/[u2112h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_b4-c1_c3-d2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,7s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+2)6d,6:6d(5+1)7n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO | null | 877.32 | {'motif': 'G00065MO', 'motif_label': 'Polysialic acid'};{'motif': 'G00036MO', 'motif_label': 'O-Glycan core 3 fuzzy'} | Neu5Ac(a2-3) | {'Neu5Ac': 1, 'Gal': 1, 'GlcNAc': 1, 'GalNAc': 1} | {'Hex': 1, 'HexNAc': 2, 'Neu5Ac': 1} | 16 | 16 | 24 | 11.168411 | {'Cluster 0': 27.97, 'Cluster 1': 25.98, 'Cluster 2': 23.3, 'Cluster 3': 13.92, 'Cluster 4': 8.83} | {'Cluster 0': 29.4071, 'Cluster 1': 26.7973, 'Cluster 2': 13.4787, 'Cluster 3': 9.3157, 'Cluster 4': 7.3359, 'Cluster 5': 5.1662, 'Cluster 6': 3.1197, 'Cluster 7': 1.6898, 'Cluster 8': 1.1999, 'Cluster 9': 1.0299, 'Cluster 10': 0.6433, 'Cluster 11': 0.2533, 'Cluster 12': 0.1833, 'Cluster 13': 0.15, 'Cluster 14': 0.11, ... | {'2': 0.3511635066974677, '3': 0.36195414204771886, '4': 0.35946025209941623, '5': 0.2971394424716278, '6': 0.24370352030337408, '7': 0.2959271991989851, '8': 0.245397272682212} | {'0': [8, 9, 14], '1': [12], '2': [0, 1, 2, 4, 5, 7, 10, 13, 15, 16], '3': [3, 6], '4': [11]} | {'explained_variance_ratio': [0.18397373019529678, 0.13992657062977382, 0.08482735316668, 0.059076037992689734, 0.03293052941768901, 0.02865972557300062, 0.023433327014152735, 0.023190222500352003, 0.022576917501624476, 0.02043539021666839], 'cumulative_variance': [0.18397373019529678, 0.3239003008250706, 0.40872765399... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)GalNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-α-D-GalpNAc-(1→ | G64844ET | WURCS=2.0/4,4,3/[a2112h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_b4-c1_c3-d2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)GalNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-GalpNAc-(1→ | G32722PR | WURCS=2.0/4,4,3/[a2112h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_b4-c1_c3-d2 | null | null | O-Glycan | {'A2G2-NAG3': {'2': {'phi': -64.13, 'psi': -137.98, 'strain': 0.758, 'linkage': '1-3'}, '3': {'phi': -76.83, 'psi': -126.81, 'strain': 0.86, 'linkage': '1-3'}, '4': {'phi': -74.17, 'psi': -146.67, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -55.71, 'psi': -158.33, 'strain': 2.393, 'linkage': '1-3'}, '6': {'phi': -... | {'A2G2-NAG3': {'2': {'phi': -64.13, 'psi': -137.98, 'strain': 0.758, 'linkage': '1-3'}, '3': {'phi': -76.83, 'psi': -126.9, 'strain': 0.86, 'linkage': '1-3'}, '4': {'phi': -74.18, 'psi': -146.69, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -55.7, 'psi': -158.27, 'strain': 2.393, 'linkage': '1-3'}, '6': {'phi': -65... | {'A2G2-NAG3': {'2': {'phi': -64.13, 'psi': -137.98, 'strain': 0.758, 'linkage': '1-3'}, '3': {'phi': -76.83, 'psi': -126.81, 'strain': 0.86, 'linkage': '1-3'}, '4': {'phi': -74.17, 'psi': -146.67, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -55.71, 'psi': -158.33, 'strain': 2.393, 'linkage': '1-3'}, '6': {'phi': -... | null | 4 | null | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 3'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G68806LA', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491959110', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491959110', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G68806LA', 'url': 'https://glytoucan.org/Structures/Glycans/G68806LA', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G68806LA', 'url': 'https://sandbox.... | 1,101.57 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(2)Hex(1)NeuAc(1) % 877.317550045 | freeEnd--?D-GalNAc--3b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G11785HS', 'relationship': 'ancestor'};{'related_accession': 'G48586RX', 'relationship': 'ancestor'};{'related_accession': 'G85811SG', 'relationship': 'ancestor'};{'related_accession': 'G94808GT', 'relationship': 'ancestor'};{'related_accession': 'G85811SG', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00049/snfg.svg | ./torsion_data/GS00049_torsion_data.txt | {'Cluster 0': {'count': 21360, '12_2_phi_mean': -79.34, '12_2_psi_mean': 69.12, '3_2_phi_mean': -77.44, '3_2_psi_mean': 111.01, '4_3_phi_mean': -76.66, '4_3_psi_mean': -121.7, '8_4_phi_mean': 80.52, '8_4_psi_mean': 90.54, '5_4_phi_mean': 71.2, '5_4_psi_mean': 133.59, '6_5_phi_mean': -80.57, '6_5_psi_mean': -85.86, '7_6... | G62223XV | GS00049 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAc[6S]b1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAc[6S]b1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc6S(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc6S-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,10,9/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-6-5-7/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12b:b-dgal-HEX-1:5,13s:sulfate,14b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6o(2+1)7d,7:7d... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H]... | null | 1,866.61 | null | Fuc(a1-6);Gal(b1-4) | {'GlcNAc': 3, 'Man': 3, 'Gal': 2, 'GlcNAc6S': 1, 'Fuc': 1} | {'Hex': 5, 'HexNAc': 4, 'dHex': 1, 'S': 1} | 1 | 5 | 6 | 13.194751 | {'Cluster 0': 53.39, 'Cluster 1': 14.45, 'Cluster 2': 12.56, 'Cluster 3': 10.18, 'Cluster 4': 9.42} | {'Cluster 0': 52.0448, 'Cluster 1': 13.2962, 'Cluster 2': 5.282, 'Cluster 3': 4.5795, 'Cluster 4': 3.7396, 'Cluster 5': 3.6971, 'Cluster 6': 3.5296, 'Cluster 7': 2.5772, 'Cluster 8': 1.8098, 'Cluster 9': 1.6248, 'Cluster 10': 1.5898, 'Cluster 11': 1.3474, 'Cluster 12': 0.9549, 'Cluster 13': 0.8274, 'Cluster 14': 0.6949... | {'2': 0.40608159412552736, '3': 0.45926207115393786, '4': 0.2924861199237449, '5': 0.3752320134496965, '6': 0.2909249886656388, '7': 0.2681544539521738, '8': 0.2696844654209117} | {'0': [5, 7, 21], '1': [0, 18, 25], '2': [1, 2, 4, 6, 11, 12, 13, 16, 17, 22, 23, 24], '3': [3, 8, 9, 15, 20], '4': [10, 14, 19]} | {'explained_variance_ratio': [0.14490390456734376, 0.1331952399796202, 0.08125920445225951, 0.06356078488346029, 0.053045269216360325, 0.0456298751326177, 0.024756072186112768, 0.02177051963119428, 0.019854786490665268, 0.01849461306991454], 'cumulative_variance': [0.14490390456734376, 0.27809914454696394, 0.3593583489... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAc[6S]b1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc6S(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc6S-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G87411OD | WURCS=2.0/7,10,9/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-6-5-7/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAc[6S]b1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc6S(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc6S-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G16588UI | WURCS=2.0/6,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-3-5-4-6/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1 | null | null | Fucosylated N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -82.53, 'psi': -72.56, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -88.76, 'psi': -65.51, 'strain': 0.34, 'linkage': '1-2'}, '4': {'phi': -91.08, 'psi': -84.23, 'strain': 0.71, 'linkage': '1-2'}, '5': {'phi': -64.71, 'psi': -72.38, 'strain': 0.558, 'linkage': '1-2'}, '6': {'phi': -92.61,... | {'MAN5-NAG6': {'2': {'phi': -82.53, 'psi': -72.56, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -88.72, 'psi': -65.54, 'strain': 0.34, 'linkage': '1-2'}, '4': {'phi': -91.07, 'psi': -84.26, 'strain': 0.71, 'linkage': '1-2'}, '5': {'phi': -64.71, 'psi': -72.43, 'strain': 0.558, 'linkage': '1-2'}, '6': {'phi': -92.6, ... | {'MAN5-NAG6': {'2': {'phi': -82.53, 'psi': -72.56, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -88.76, 'psi': -65.51, 'strain': 0.34, 'linkage': '1-2'}, '4': {'phi': -91.08, 'psi': -84.23, 'strain': 0.71, 'linkage': '1-2'}, '5': {'phi': -64.71, 'psi': -72.38, 'strain': 0.558, 'linkage': '1-2'}, '6': {'phi': -92.61,... | null | 10 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Biantennary'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G62223XV', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G62223XV', 'url': 'https://glytoucan.org/Structures/Glycans/G62223XV', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G62223XV', 'url': 'https://sandbox.glyomics.org/explore.html?G62223XV', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G62223XV', 'url': 'https://gnome.glyom... | 2,287.08 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 196 | Saccharide | HexNAc(4)Hex(5)dHex(1)Sulpho(1) % 1866.60689608 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p--2b1D-GlcNAc,p(--6S)--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G18629WM', 'relationship': 'ancestor'};{'related_accession': 'G52798MY', 'relationship': 'ancestor'};{'related_accession': 'G63236GA', 'relationship': 'ancestor'};{'related_accession': 'G90792BW', 'relationship': 'ancestor'};{'related_accession': 'G63236GA', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00050/snfg.svg | ./torsion_data/GS00050_torsion_data.txt | {'Cluster 0': {'count': 14018, '3_2_phi_mean': 76.53, '3_2_psi_mean': -142.58, '4_3_phi_mean': -78.66, '4_3_psi_mean': 116.13, '5_4_phi_mean': 78.29, '5_4_psi_mean': -142.7, '6_5_phi_mean': -76.99, '6_5_psi_mean': 116.39, '7_6_phi_mean': 78.19, '7_6_psi_mean': -142.58, '8_7_phi_mean': -76.42, '8_7_psi_mean': 117.22, '9... | G66492AD | GS00050 | DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-OH | DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpA | GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA | α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-D-GlcA | WURCS=2.0/3,10,9/[u2122A][a2122h-1a_1-5_2*NCC/3=O][a2122A-1b_1-5]/1-2-3-2-3-2-3-2-3-2/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1 | RES,1b:b-dglc-HEX-1:5|-1:a,2b:a-dglc-HEX-1:5,3s:n-acetyl,4b:b-dglc-HEX-1:5|-1:a,5b:a-dglc-HEX-1:5,6s:n-acetyl,7b:b-dglc-HEX-1:5|-1:a,8b:a-dglc-HEX-1:5,9s:n-acetyl,10b:b-dglc-HEX-1:5|-1:a,11b:a-dglc-HEX-1:5,12s:n-acetyl,13b:b-dglc-HEX-1:5|-1:a,14b:a-dglc-HEX-1:5,15s:n-acetyl,LIN,1:1o(4+1)2d,2:2d(2+1)3n,3:2o(4+1)4d,4:4o(... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](C(=O)O)[C@@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](C(=O)O)[C@@H](O[C@H]6O[C@H](CO)[C@@H](O[C@@H]7O[C@H](C(=O)O)[C@@H](O[C@H]8O[C@H](CO)[C@@H](O[C@@H]9O[C@H](C(=O)O)[C@@H](O[C@H]%10O[C@H](CO)[C@@H](O)[C@H](O)[C@H]%10NC(C)=O)[C@H](O)[C@H]9O)[C@H](O)[C@... | null | 1,913.57 | null | GlcNAc(a1-4) | {'GlcNAc': 5, 'GlcA': 5} | {'HexA': 5, 'HexNAc': 5} | 1 | 5 | 6 | 13.796041 | {'Cluster 0': 46.72, 'Cluster 1': 23.92, 'Cluster 2': 17.35, 'Cluster 3': 6.06, 'Cluster 4': 5.94} | {'Cluster 0': 62.7737, 'Cluster 1': 13.472, 'Cluster 2': 6.1661, 'Cluster 3': 5.6394, 'Cluster 4': 2.7231, 'Cluster 5': 2.3198, 'Cluster 6': 1.6065, 'Cluster 7': 1.1965, 'Cluster 8': 0.9932, 'Cluster 9': 0.5433, 'Cluster 10': 0.49, 'Cluster 11': 0.4466, 'Cluster 12': 0.3366, 'Cluster 13': 0.2, 'Cluster 14': 0.19, 'Clus... | {'2': 0.49348055120705975, '3': 0.4335808612084093, '4': 0.2763173053435301, '5': 0.2624958878313297, '6': 0.2668872301468443, '7': 0.24927786251613493, '8': 0.25097744555241486} | {'0': [11, 25, 28], '1': [0, 21], '2': [2, 3, 6, 8, 12, 14, 17, 20, 23, 24, 26], '3': [1, 4, 5, 7, 9, 10, 13, 15, 16, 18, 19, 22, 27, 29], '4': []} | {'explained_variance_ratio': [0.19471279953494627, 0.09830075969541974, 0.06722606433207537, 0.050995902828256535, 0.04530524688187134, 0.029232804954663905, 0.025156024577411888, 0.023343808745721215, 0.021718462133251716, 0.01843915503778966], 'cumulative_variance': [0.19471279953494627, 0.293013559230366, 0.36023962... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAa1-OH | GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(a1- | α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-α-D-GlcpA-(1→ | G00810SR | WURCS=2.0/3,10,9/[a2122A-1a_1-5][a2122h-1a_1-5_2*NCC/3=O][a2122A-1b_1-5]/1-2-3-2-3-2-3-2-3-2/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1 | DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-OH | GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1- | null | null | null | null | null | GAG | {'BDP2-NDG3': {'2': {'phi': 73.52, 'psi': 87.05, 'strain': 1.945, 'linkage': '1-4'}, '3': {'phi': 88.58, 'psi': 96.67, 'strain': 1.896, 'linkage': '1-4'}, '4': {'phi': 83.26, 'psi': 94.95, 'strain': 1.896, 'linkage': '1-4'}, '5': {'phi': 95.2, 'psi': 75.83, 'strain': 3.002, 'linkage': '1-4'}, '6': {'phi': 83.52, 'psi':... | {'BDP2-NDG3': {'2': {'phi': 73.52, 'psi': 87.05, 'strain': 1.945, 'linkage': '1-4'}, '3': {'phi': 88.62, 'psi': 96.68, 'strain': 1.896, 'linkage': '1-4'}, '4': {'phi': 83.2, 'psi': 94.99, 'strain': 1.896, 'linkage': '1-4'}, '5': {'phi': 95.18, 'psi': 75.92, 'strain': 3.002, 'linkage': '1-4'}, '6': {'phi': 83.52, 'psi':... | {} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00051/snfg.svg | ./torsion_data/GS00051_torsion_data.txt | {'Cluster 0': {'count': 8930, '4_2_phi_mean': -70.39, '4_2_psi_mean': 131.06, '3_2_phi_mean': -65.36, '3_2_psi_mean': -98.67, '4_2_phi_std': 6.49, '4_2_psi_std': 5.77, '3_2_phi_std': 6.07, '3_2_psi_std': 6.62}, 'Cluster 1': {'count': 7665, '4_2_phi_mean': -64.26, '4_2_psi_mean': 127.57, '3_2_phi_mean': -73.33, '3_2_psi... | G94468TS | GS00051 | DGalpb1-4[LFucpa1-3]DGlcpa1-OH | DGalpb1-4[LFucpa1-3]DGlcp | Fuc(a1-3)[Gal(b1-4)]Glc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-D-Glc | WURCS=2.0/3,3,2/[u2122h][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3/a3-b1_a4-c1 | RES,1b:b-dglc-HEX-1:5,2b:a-lgal-HEX-1:5|6:d,3b:b-dgal-HEX-1:5,LIN,1:1o(3+1)2d,2:1o(4+1)3d, | O1C(O)[C@H](O)[C@@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H]1CO | null | 488.17 | null | Fuc(a1-3);Gal(b1-4) | {'Fuc': 1, 'Gal': 1, 'Glc': 1} | {'Hex': 2, 'dHex': 1} | 6 | 10 | 15 | 9.816933 | {'Cluster 0': 29.76, 'Cluster 1': 25.55, 'Cluster 2': 20.0, 'Cluster 3': 19.25, 'Cluster 4': 5.43} | {'Cluster 0': 56.8143, 'Cluster 1': 29.6737, 'Cluster 2': 3.8396, 'Cluster 3': 3.633, 'Cluster 4': 1.8265, 'Cluster 5': 1.8098, 'Cluster 6': 1.4365, 'Cluster 7': 0.3766, 'Cluster 8': 0.2266, 'Cluster 9': 0.1866, 'Cluster 10': 0.1333, 'Cluster 11': 0.0267, 'Cluster 12': 0.0167} | {'2': 0.3656379237059817, '3': 0.2466862538457217, '4': 0.23585438768718972, '5': 0.21651670860493846, '6': 0.22253392867909366, '7': 0.21639667772703175, '8': 0.20735057996900874} | {'0': [1, 3, 6, 12], '1': [2, 8, 11], '2': [5, 7], '3': [0, 4, 9], '4': [10]} | {'explained_variance_ratio': [0.1303938411704154, 0.09352119184784795, 0.049736096893115124, 0.04922894597162954, 0.04302255616469004, 0.040370932610146515, 0.03569723257328848, 0.0341323803847199, 0.03147633306560655, 0.031097817079100323], 'cumulative_variance': [0.1303938411704154, 0.22391503301826332, 0.27365112991... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4[LFucpa1-3]DGlcpa1-OH | Fuc(a1-3)[Gal(b1-4)]Glc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-α-D-Glcp-(1→ | G47920WV | WURCS=2.0/3,3,2/[a2122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3/a3-b1_a4-c1 | DGalpb1-4[LFucpa1-3]DGlcpb1-OH | Fuc(a1-3)[Gal(b1-4)]Glc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-Glcp-(1→ | G57548NB | WURCS=2.0/3,3,2/[a2122h-1b_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3/a3-b1_a4-c1 | null | null | null | {'GLC2-FUC3': {'2': {'phi': -64.0, 'psi': -102.88, 'strain': 0.087, 'linkage': '1-3'}, '3': {'phi': -73.42, 'psi': -93.14, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -65.03, 'psi': -102.1, 'strain': 0.087, 'linkage': '1-3'}, '5': {'phi': -66.06, 'psi': -99.62, 'strain': 0.094, 'linkage': '1-3'}, '6': {'phi': -88.7... | {'GLC2-FUC3': {'2': {'phi': -64.0, 'psi': -102.88, 'strain': 0.087, 'linkage': '1-3'}, '3': {'phi': -73.47, 'psi': -93.2, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -64.99, 'psi': -102.16, 'strain': 0.087, 'linkage': '1-3'}, '5': {'phi': -66.02, 'psi': -99.65, 'strain': 0.094, 'linkage': '1-3'}, '6': {'phi': -88.7... | {'GLC2-FUC3': {'2': {'phi': -64.0, 'psi': -102.88, 'strain': 0.087, 'linkage': '1-3'}, '3': {'phi': -73.42, 'psi': -93.14, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -65.03, 'psi': -102.1, 'strain': 0.087, 'linkage': '1-3'}, '5': {'phi': -66.06, 'psi': -99.62, 'strain': 0.094, 'linkage': '1-3'}, '6': {'phi': -88.7... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G94468TS'}]};{'taxon_id': '9823', 'taxon_label': 'Sus scrofa (pig)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G94468TS'}]} | 3 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G94468TS', 'url': 'https://glycosmos.org/glycans/show/G94468TS'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'};{'taxid': 9823, 'name': 'Sus scrofa', 'ann... | {'type': {'name': 'Human Milk Oligosaccharide'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G94468TS', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G94468... | {'id': '491868405', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491868405', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1963', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '15073', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+15073', 'database': 'Ca... | 628.33 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | Hex(2)dHex(1) % 488.17412057 | freeEnd--?D-Glc(--3a1L-Fuc,p)--4b1D-Gal,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G16429YB', 'relationship': 'ancestor'};{'related_accession': 'G22816WV', 'relationship': 'ancestor'};{'related_accession': 'G42530VR', 'relationship': 'ancestor'};{'related_accession': 'G49157OO', 'relationship': 'ancestor'};{'related_accession': 'G58169SI', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00052/snfg.svg | ./torsion_data/GS00052_torsion_data.txt | {'Cluster 0': {'count': 20740, '3_2_phi_mean': -71.27, '3_2_psi_mean': 125.18, '7_3_phi_mean': -89.4, '7_3_psi_mean': -85.13, '4_3_phi_mean': -79.73, '4_3_psi_mean': 109.97, '5_4_phi_mean': -67.67, '5_4_psi_mean': 129.6, '6_5_phi_mean': -69.97, '6_5_psi_mean': 137.17, '9_7_phi_mean': -68.34, '9_7_psi_mean': -108.15, '8... | G98670RK | GS00052 | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[LFucpa1-2DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[LFucpa1-2DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcp | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)[Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)]Gal(b1-4)Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/5,9,8/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4-3-4-2-5/a4-b1_b3-c1_b6-f1_c3-d1_d2-e1_f3-g1_f4-h1_h3-i2 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-lgal-HEX-1:5|6:d,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,12s:n-acetyl,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:5o(2+1)6d,6:2o(6+1)7d,7:7d(2+1)8n... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@]5(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O5)[C@H]4O)[C@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H]3NC(C)=O)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](... | null | 1,655.59 | {'motif': 'G00054MO', 'motif_label': 'Sialyl Lewis x'};{'motif': 'G00294TN', 'motif_label': 'Blood group H (type 1)'};{'motif': 'G00054MO', 'motif_label': 'Slex'} | Fuc(a1-3);Fuc(a1-2);Neu5Ac(a2-3) | {'Gal': 3, 'Fuc': 2, 'GlcNAc': 2, 'Neu5Ac': 1, 'Glc': 1} | {'Hex': 4, 'HexNAc': 2, 'Neu5Ac': 1, 'dHex': 2} | 29 | 29 | 47 | 12.451478 | {'Cluster 0': 51.84, 'Cluster 1': 16.07, 'Cluster 2': 15.85, 'Cluster 3': 8.79, 'Cluster 4': 7.45} | {'Cluster 0': 23.6426, 'Cluster 1': 18.9281, 'Cluster 2': 12.8862, 'Cluster 3': 6.1519, 'Cluster 4': 5.8694, 'Cluster 5': 5.427, 'Cluster 6': 4.8795, 'Cluster 7': 3.5021, 'Cluster 8': 2.8047, 'Cluster 9': 2.4923, 'Cluster 10': 2.3823, 'Cluster 11': 1.9473, 'Cluster 12': 1.8423, 'Cluster 13': 1.7323, 'Cluster 14': 1.667... | {'2': 0.42951263133255524, '3': 0.44321406556158566, '4': 0.35629250386061867, '5': 0.32663519572934596, '6': 0.3402652651235689, '7': 0.30650394932265274, '8': 0.3560255204329017} | {'0': [2, 17], '1': [7, 10, 12, 22], '2': [0, 5, 11, 13, 20], '3': [1, 3, 6, 8, 15, 18, 19], '4': [4, 9, 14, 16, 21]} | {'explained_variance_ratio': [0.25882320508939366, 0.08994433467220873, 0.06265520011270627, 0.04827393338428095, 0.04451222963868936, 0.02999251840553242, 0.028559744607371578, 0.023222856116857635, 0.02185346754455316, 0.017220502154758833], 'cumulative_variance': [0.25882320508939366, 0.3487675397616024, 0.411422739... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[LFucpa1-2DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)[Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)]Gal(b1-4)Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G59087DO | WURCS=2.0/5,9,8/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4-3-4-2-5/a4-b1_b3-c1_b6-f1_c3-d1_d2-e1_f3-g1_f4-h1_h3-i2 | DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[LFucpa1-2DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)[Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)]Gal(b1-4)Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G83695DI | WURCS=2.0/5,9,8/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4-3-4-2-5/a4-b1_b3-c1_b6-f1_c3-d1_d2-e1_f3-g1_f4-h1_h3-i2 | null | null | null | {'GAL5-FUC6': {'2': {'phi': -71.53, 'psi': 134.56, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -75.22, 'psi': 140.91, 'strain': 0.496, 'linkage': '1-2'}, '4': {'phi': -69.05, 'psi': 128.96, 'strain': 0.979, 'linkage': '1-2'}, '5': {'phi': -73.53, 'psi': 132.3, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -68.3... | {'GAL5-FUC6': {'2': {'phi': -71.53, 'psi': 134.56, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -75.16, 'psi': 140.89, 'strain': 0.496, 'linkage': '1-2'}, '4': {'phi': -68.97, 'psi': 128.95, 'strain': 0.979, 'linkage': '1-2'}, '5': {'phi': -73.52, 'psi': 132.26, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -68.... | {'GAL5-FUC6': {'2': {'phi': -71.53, 'psi': 134.56, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -75.22, 'psi': 140.91, 'strain': 0.496, 'linkage': '1-2'}, '4': {'phi': -69.05, 'psi': 128.96, 'strain': 0.979, 'linkage': '1-2'}, '5': {'phi': -73.53, 'psi': 132.3, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -68.3... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00053/snfg.svg | ./torsion_data/GS00053_torsion_data.txt | {'Cluster 0': {'count': 22321, '3_2_phi_mean': -75.55, '3_2_psi_mean': 117.35, '3_2_phi_std': 15.89, '3_2_psi_std': 17.29}, 'Cluster 1': {'count': 19264, '3_2_phi_mean': -75.88, '3_2_psi_mean': 88.74, '3_2_phi_std': 29.02, '3_2_psi_std': 66.02}, 'Cluster 2': {'count': 11347, '3_2_phi_mean': -73.84, '3_2_psi_mean': 115.... | G38310GJ | GS00053 | DNeup5Aca2-6DGalpb1-4DGlcpNAca1-OH | DNeup5Aca2-6DGalpb1-4DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)GlcNAc | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-D-GlcNAc | WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b6-c2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3o(6+2)4d,4:4d(5+1)5n, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H](O)[C@H](O)[C@H]2O)[C@H]1CO | null | 674.24 | null | Neu5Ac(a2-6) | {'Neu5Ac': 1, 'Gal': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Ac': 1} | 12 | 13 | 19 | 9.911229 | {'Cluster 0': 37.2, 'Cluster 1': 32.1, 'Cluster 2': 18.91, 'Cluster 3': 6.57, 'Cluster 4': 5.22} | {'Cluster 0': 57.7176, 'Cluster 1': 16.435, 'Cluster 2': 14.0186, 'Cluster 3': 2.2948, 'Cluster 4': 1.9531, 'Cluster 5': 1.6665, 'Cluster 6': 1.6198, 'Cluster 7': 1.2749, 'Cluster 8': 0.9349, 'Cluster 9': 0.7983, 'Cluster 10': 0.7266, 'Cluster 11': 0.2716, 'Cluster 12': 0.2116, 'Cluster 13': 0.0767} | {'2': 0.32053045516391243, '3': 0.4318830459184965, '4': 0.36797141426691926, '5': 0.35590402948662575, '6': 0.272372672476872, '7': 0.28423724389989813, '8': 0.2805588645033721} | {'0': [0], '1': [3], '2': [1, 2, 5, 6, 11, 12, 13], '3': [4, 8, 9, 10], '4': [7]} | {'explained_variance_ratio': [0.18302917736772534, 0.08880186708964422, 0.08774786256543321, 0.06181842813975198, 0.059541057323547156, 0.03334904916942058, 0.032567976960788926, 0.03119223233339741, 0.029991166628780715, 0.022806978984144292], 'cumulative_variance': [0.18302917736772534, 0.27183104445736955, 0.3595789... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-6DGalpb1-4DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(a1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-α-D-GlcpNAc-(1→ | G98335IX | WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b6-c2 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→ | G73578JC | WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b6-c2 | null | null | null | {'NDG2-GAL3': {'2': {'phi': -65.07, 'psi': 122.08, 'strain': 0.031, 'linkage': '1-4'}, '3': {'phi': -71.4, 'psi': 124.34, 'strain': 0.008, 'linkage': '1-4'}, '4': {'phi': -68.13, 'psi': 122.17, 'strain': 0.031, 'linkage': '1-4'}, '5': {'phi': -70.78, 'psi': 94.09, 'strain': 0.777, 'linkage': '1-4'}, '6': {'phi': -74.98... | {'NDG2-GAL3': {'2': {'phi': -65.07, 'psi': 122.08, 'strain': 0.031, 'linkage': '1-4'}, '3': {'phi': -71.44, 'psi': 124.38, 'strain': 0.008, 'linkage': '1-4'}, '4': {'phi': -68.08, 'psi': 122.12, 'strain': 0.031, 'linkage': '1-4'}, '5': {'phi': -70.7, 'psi': 94.03, 'strain': 0.777, 'linkage': '1-4'}, '6': {'phi': -74.99... | {'NDG2-GAL3': {'2': {'phi': -65.07, 'psi': 122.08, 'strain': 0.031, 'linkage': '1-4'}, '3': {'phi': -71.4, 'psi': 124.34, 'strain': 0.008, 'linkage': '1-4'}, '4': {'phi': -68.13, 'psi': 122.17, 'strain': 0.031, 'linkage': '1-4'}, '5': {'phi': -70.78, 'psi': 94.09, 'strain': 0.777, 'linkage': '1-4'}, '6': {'phi': -74.98... | {'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G38310GJ'}]};{'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glyc... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00054/snfg.svg | ./torsion_data/GS00054_torsion_data.txt | {'Cluster 0': {'count': 25743, '3_2_phi_mean': -68.74, '3_2_psi_mean': 127.29, '8_3_phi_mean': -90.4, '8_3_psi_mean': -82.92, '4_3_phi_mean': -79.54, '4_3_psi_mean': 110.42, '7_4_phi_mean': -69.46, '7_4_psi_mean': -98.6, '5_4_phi_mean': -70.21, '5_4_psi_mean': 133.86, '10_8_phi_mean': -67.5, '10_8_psi_mean': -108.05, '... | G22732RT | GS00054 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3]DGalpb1-4DGlcp | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)]Gal(b1-4)Glc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/5,12,11/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-5-3-5-2-3-2-5/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d3-e2_g3-h1_g4-i1_i3-j1_j3-k1_k2-l1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,7s:n-acetyl,8b:a-lgal-HEX-1:5|6:d,9b:b-dglc-HEX-1:5,10s:n-acetyl,11b:a-lgal-HEX-1:5|6:d,12b:b-dgal-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:a-lgal-HEX-1:5|6:d,LIN,1:1o(4+1)... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O[C@@H]7O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]7O)[C@H]5NC(C)=O)[C@H]4O)[C@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H]3NC(C)=O)[C@H](O)[C@H]... | null | 2,166.78 | {'motif': 'G00053MO', 'motif_label': 'CA19-9 antigen'};{'motif': 'G00053MO', 'motif_label': 'Sialyl Lewis a'};{'motif': 'G00053MO', 'motif_label': 'Slea'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00294TN', 'motif_label': 'Blood group H (ty... | Fuc(a1-3);Fuc(a1-2);Neu5Ac(a2-3);Fuc(a1-4) | {'Gal': 4, 'Fuc': 3, 'GlcNAc': 3, 'Neu5Ac': 1, 'Glc': 1} | {'Hex': 5, 'HexNAc': 3, 'Neu5Ac': 1, 'dHex': 3} | 38 | 37 | 61 | 13.436072 | {'Cluster 0': 42.9, 'Cluster 1': 23.77, 'Cluster 2': 21.78, 'Cluster 3': 6.05, 'Cluster 4': 5.49} | {'Cluster 0': 31.8318, 'Cluster 1': 27.9105, 'Cluster 2': 8.9891, 'Cluster 3': 8.4242, 'Cluster 4': 3.3263, 'Cluster 5': 3.2697, 'Cluster 6': 2.0748, 'Cluster 7': 1.7632, 'Cluster 8': 1.7482, 'Cluster 9': 1.6982, 'Cluster 10': 1.5965, 'Cluster 11': 1.2149, 'Cluster 12': 1.0182, 'Cluster 13': 0.9682, 'Cluster 14': 0.836... | {'2': 0.4231546235829164, '3': 0.4172950380384621, '4': 0.4041851192294515, '5': 0.1931696905375884, '6': 0.30762544896204086, '7': 0.2048106392625194, '8': 0.2453951973877339} | {'0': [15], '1': [6, 9, 17, 21, 25], '2': [2, 4, 16, 23], '3': [0, 5, 10, 22], '4': [1, 3, 7, 8, 11, 12, 13, 14, 18, 19, 20, 24, 26, 27]} | {'explained_variance_ratio': [0.23256154991564004, 0.11624350453607675, 0.07730674631903998, 0.04146731856320255, 0.039972710629479526, 0.0343634729315355, 0.032804783707917756, 0.026877577661536665, 0.023977095199984085, 0.018328110746545834], 'cumulative_variance': [0.23256154991564004, 0.3488050544517168, 0.42611180... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)]Gal(b1-4)Glc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G43113YA | WURCS=2.0/5,12,11/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-5-3-5-2-3-2-5/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d3-e2_g3-h1_g4-i1_i3-j1_j3-k1_k2-l1 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3]DGalpb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)]Gal(b1-4)Glc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G66505KY | WURCS=2.0/5,12,11/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-5-3-5-2-3-2-5/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d3-e2_g3-h1_g4-i1_i3-j1_j3-k1_k2-l1 | null | null | null | {'GAL12-FUC13': {'2': {'phi': -55.6, 'psi': 125.03, 'strain': 1.886, 'linkage': '1-2'}, '3': {'phi': -86.85, 'psi': 133.16, 'strain': 1.582, 'linkage': '1-2'}, '4': {'phi': -73.07, 'psi': 136.06, 'strain': 0.426, 'linkage': '1-2'}, '5': {'phi': -61.45, 'psi': 140.67, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -76... | {'GAL12-FUC13': {'2': {'phi': -55.6, 'psi': 125.03, 'strain': 1.886, 'linkage': '1-2'}, '3': {'phi': -86.84, 'psi': 133.16, 'strain': 1.582, 'linkage': '1-2'}, '4': {'phi': -73.09, 'psi': 135.99, 'strain': 0.426, 'linkage': '1-2'}, '5': {'phi': -61.41, 'psi': 140.64, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -76... | {'GAL12-FUC13': {'2': {'phi': -55.6, 'psi': 125.03, 'strain': 1.886, 'linkage': '1-2'}, '3': {'phi': -86.85, 'psi': 133.16, 'strain': 1.582, 'linkage': '1-2'}, '4': {'phi': -73.07, 'psi': 136.06, 'strain': 0.426, 'linkage': '1-2'}, '5': {'phi': -61.45, 'psi': 140.67, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -76... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G22732RT'}]} | 12 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G22732RT', 'url': 'https://glycosmos.org/glycans/show/G22732RT'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G22732RT', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G22732... | {'id': '491845362', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491845362', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '15948', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '31968', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+31968', 'database': 'C... | 2,685.36 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 164 | Saccharide | HexNAc(3)Hex(5)dHex(3)NeuAc(1) % 2166.78194326 | freeEnd--?D-Glc--4b1D-Gal,p(--3b1D-GlcNAc,p(--3b1D-Gal,p--3a2D-NeuAc,p)--4a1L-Fuc,p)--6b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3b1D-GlcNAc,p--3b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Le... | {'related_accession': 'G24661ER', 'relationship': 'ancestor'};{'related_accession': 'G28096RS', 'relationship': 'ancestor'};{'related_accession': 'G61049BY', 'relationship': 'ancestor'};{'related_accession': 'G79691XX', 'relationship': 'ancestor'};{'related_accession': 'G97612GY', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00055/snfg.svg | ./torsion_data/GS00055_torsion_data.txt | {'Cluster 0': {'count': 8058, '3_2_phi_mean': -76.17, '3_2_psi_mean': 103.95, '7_3_phi_mean': -78.46, '7_3_psi_mean': -17.34, '4_3_phi_mean': -79.93, '4_3_psi_mean': 106.55, '5_4_phi_mean': -67.78, '5_4_psi_mean': 129.32, '6_5_phi_mean': -70.93, '6_5_psi_mean': 135.36, '8_7_phi_mean': -72.82, '8_7_psi_mean': -120.38, '... | G02278OY | GS00055 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[LFucpa1-2DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[LFucpa1-2DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcp | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)]Gal(b1-4)Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/5,8,7/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4-3-2-5/a4-b1_b3-c1_b6-f1_c3-d1_d2-e1_f4-g1_g6-h2 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-lgal-HEX-1:5|6:d,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:5o(2+1)6d,6:2o(6+1)7d,7:7d(2+1)8n,8:7o(4+1)9d,9:9o(6+2)1... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO[C@]5(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O5)[C@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O... | null | 1,509.53 | {'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00294TN', 'motif_label': 'Blood group H (type 1)'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'} | Fuc(a1-2);Neu5Ac(a2-6) | {'Gal': 3, 'GlcNAc': 2, 'Fuc': 1, 'Neu5Ac': 1, 'Glc': 1} | {'Hex': 4, 'HexNAc': 2, 'Neu5Ac': 1, 'dHex': 1} | 27 | 27 | 43 | 12.743032 | {'Cluster 0': 40.28, 'Cluster 1': 21.57, 'Cluster 2': 18.59, 'Cluster 3': 9.95, 'Cluster 4': 9.61} | {'Cluster 0': 21.7517, 'Cluster 1': 18.4222, 'Cluster 2': 12.7831, 'Cluster 3': 10.2885, 'Cluster 4': 5.2042, 'Cluster 5': 4.1994, 'Cluster 6': 3.6744, 'Cluster 7': 3.3945, 'Cluster 8': 2.8096, 'Cluster 9': 2.5696, 'Cluster 10': 2.2897, 'Cluster 11': 2.2597, 'Cluster 12': 1.7697, 'Cluster 13': 1.5798, 'Cluster 14': 1.4... | {'2': 0.2847023624866272, '3': 0.30225109071922335, '4': 0.30658432879671904, '5': 0.2698251448267738, '6': 0.2921103105194537, '7': 0.2475577408259647, '8': 0.2713496425022254} | {'0': [2, 8, 22], '1': [1, 3, 10, 14, 15, 16, 21], '2': [5], '3': [0, 4, 6, 9, 11, 12, 13, 17, 18, 19, 20], '4': [7, 23]} | {'explained_variance_ratio': [0.2423879763879814, 0.09852422996386274, 0.07673475538606638, 0.05027072451301437, 0.03658979213928062, 0.033407037952900585, 0.02861054044891514, 0.021802344536279505, 0.021013779286892183, 0.017042910889862994], 'cumulative_variance': [0.2423879763879814, 0.34091220635184416, 0.417646961... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[LFucpa1-2DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)]Gal(b1-4)Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G52457TQ | WURCS=2.0/5,8,7/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4-3-2-5/a4-b1_b3-c1_b6-f1_c3-d1_d2-e1_f4-g1_g6-h2 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[LFucpa1-2DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)]Gal(b1-4)Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G52333FC | WURCS=2.0/5,8,7/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4-3-2-5/a4-b1_b3-c1_b6-f1_c3-d1_d2-e1_f4-g1_g6-h2 | null | null | null | {'GAL5-FUC6': {'2': {'phi': -58.68, 'psi': 134.12, 'strain': 1.173, 'linkage': '1-2'}, '3': {'phi': -73.26, 'psi': 142.61, 'strain': 0.496, 'linkage': '1-2'}, '4': {'phi': -77.04, 'psi': 128.92, 'strain': 1.159, 'linkage': '1-2'}, '5': {'phi': -80.56, 'psi': 145.73, 'strain': 1.678, 'linkage': '1-2'}, '6': {'phi': -67.... | {'GAL5-FUC6': {'2': {'phi': -58.68, 'psi': 134.12, 'strain': 1.173, 'linkage': '1-2'}, '3': {'phi': -73.25, 'psi': 142.61, 'strain': 0.496, 'linkage': '1-2'}, '4': {'phi': -77.05, 'psi': 128.95, 'strain': 1.159, 'linkage': '1-2'}, '5': {'phi': -80.6, 'psi': 145.72, 'strain': 1.678, 'linkage': '1-2'}, '6': {'phi': -67.6... | {'GAL5-FUC6': {'2': {'phi': -58.68, 'psi': 134.12, 'strain': 1.173, 'linkage': '1-2'}, '3': {'phi': -73.26, 'psi': 142.61, 'strain': 0.496, 'linkage': '1-2'}, '4': {'phi': -77.04, 'psi': 128.92, 'strain': 1.159, 'linkage': '1-2'}, '5': {'phi': -80.56, 'psi': 145.73, 'strain': 1.678, 'linkage': '1-2'}, '6': {'phi': -67.... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G02278OY'}]} | 8 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G02278OY', 'url': 'https://glycosmos.org/glycans/show/G02278OY'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G02278OY', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G02278... | {'id': '491838838', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491838838', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1634', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '1488', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+1488', 'database': 'Carb... | 1,887.96 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 246 | Saccharide | HexNAc(2)Hex(4)dHex(1)NeuAc(1) % 1509.53392942 | freeEnd--?D-Glc--4b1D-Gal,p(--3b1D-GlcNAc,p--3b1D-Gal,p--2a1L-Fuc,p)--6b1D-GlcNAc,p--4b1D-Gal,p--6a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000042', 'name': 'Blood group H (type 1)', 'keyw... | {'related_accession': 'G36011HK', 'relationship': 'ancestor'};{'related_accession': 'G37246GN', 'relationship': 'ancestor'};{'related_accession': 'G39916IH', 'relationship': 'ancestor'};{'related_accession': 'G40309AV', 'relationship': 'ancestor'};{'related_accession': 'G87346MV', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00056/snfg.svg | ./torsion_data/GS00056_torsion_data.txt | {} | G15807NZ | GS00056 | DNeup5Aca2-6DGalpNAca1-OH | DNeup5Aca2-6DGalpNAc | Neu5Ac(a2-6)GalNAc | α-D-Neup5Ac-(2→6)-D-GalNAc | WURCS=2.0/2,2,1/[u2112h_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2/a6-b2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,4s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(6+2)3d,3:3d(5+1)4n, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@@H](O)[C@H]1CO[C@]2(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O2 | null | 512.19 | null | Neu5Ac(a2-6) | {'Neu5Ac': 1, 'GalNAc': 1} | {'HexNAc': 1, 'Neu5Ac': 1} | 9 | 10 | 14 | 8.556686 | {'Cluster 0': 33.31, 'Cluster 1': 24.59, 'Cluster 2': 16.0, 'Cluster 3': 13.7, 'Cluster 4': 12.4} | {'Cluster 0': 45.3555, 'Cluster 1': 15.5051, 'Cluster 2': 14.0819, 'Cluster 3': 10.4056, 'Cluster 4': 4.6862, 'Cluster 5': 4.6595, 'Cluster 6': 1.8698, 'Cluster 7': 1.4532, 'Cluster 8': 1.0366, 'Cluster 9': 0.9466} | {'2': 0.48015893843486346, '3': 0.368412648723751, '4': 0.45242234599508524, '5': 0.38912127811700065, '6': 0.38620141641909467, '7': 0.3488748086873622, '8': 0.3444105547874346} | {'0': [4, 9], '1': [0], '2': [5], '3': [1, 3, 6, 7, 8], '4': [2]} | {'explained_variance_ratio': [0.22621886933895635, 0.08276140899450772, 0.05974530281154173, 0.05416205343550662, 0.05145948225675418, 0.04238459096231636, 0.02860369110776498, 0.028183802052330027, 0.025314960589055104, 0.023335477885901464], 'cumulative_variance': [0.22621886933895635, 0.3089802783334641, 0.368725581... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-6DGalpNAca1-OH | Neu5Ac(a2-6)GalNAc(a1- | α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→ | G36123IU | WURCS=2.0/2,2,1/[a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2/a6-b2 | DNeup5Aca2-6DGalpNAcb1-OH | Neu5Ac(a2-6)GalNAc(b1- | α-D-Neup5Ac-(2→6)-β-D-GalpNAc-(1→ | G73708UL | WURCS=2.0/2,2,1/[a2112h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2/a6-b2 | null | null | null | {} | {} | {} | {'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G15807NZ'}]};{'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glyc... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00057/snfg.svg | ./torsion_data/GS00057_torsion_data.txt | {'Cluster 0': {'count': 9402, '4_2_phi_mean': -73.26, '4_2_psi_mean': 131.57, '3_2_phi_mean': -73.31, '3_2_psi_mean': -96.21, '6_4_phi_mean': -67.21, '6_4_psi_mean': -107.58, '5_4_phi_mean': -69.23, '5_4_psi_mean': 141.22, '7_6_phi_mean': -84.25, '7_6_psi_mean': 140.5, '9_7_phi_mean': -67.74, '9_7_psi_mean': -108.93, '... | G94235HZ | GS00057 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4[LFucpa1-3]DGlcpa1-OH | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4[LFucpa1-3]DGlcp | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-4)[Fuc(a1-3)]Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→3)]-D-Glc | WURCS=2.0/4,9,8/[u2122h][a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3-2-4-3-2-4-2/a3-b1_a4-c1_c3-d1_c4-e1_e3-f1_f3-g1_f4-h1_h2-i1 | RES,1b:b-dglc-HEX-1:5,2b:a-lgal-HEX-1:5|6:d,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:a-lgal-HEX-1:5|6:d,6b:b-dgal-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-lgal-HEX-1:5|6:d,LIN,1:1o(3+1)2d,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:3o(4+1)6d,6:6o(3+1)7d,7:7d(2+1)8n,8:7o(3+1)9d,9:7o(4+1)10d... | O1C(O)[C@H](O)[C@@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H](O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H]4NC(C)=O)[C@H]3O)[C@H](O[... | null | 1,494.56 | {'motif': 'G00052MO', 'motif_label': 'Blood group H (type 2)'};{'motif': 'G00052MO', 'motif_label': 'Leb'};{'motif': 'G00052MO', 'motif_label': 'Lewis b'};{'motif': 'G00052MO', 'motif_label': 'Ley'};{'motif': 'G70519XK', 'motif_label': 'Blood group H (type 2)'};{'motif': 'G79535HZ', 'motif_label': 'Lex-Lex'} | Fuc(a1-3);Fuc(a1-2) | {'Fuc': 4, 'Gal': 2, 'GlcNAc': 2, 'Glc': 1} | {'Hex': 3, 'HexNAc': 2, 'dHex': 4} | 23 | 25 | 42 | 12.752603 | {'Cluster 0': 31.34, 'Cluster 1': 26.06, 'Cluster 2': 17.74, 'Cluster 3': 13.5, 'Cluster 4': 11.37} | {'Cluster 0': 27.1573, 'Cluster 1': 23.5876, 'Cluster 2': 21.6578, 'Cluster 3': 6.8526, 'Cluster 4': 4.5262, 'Cluster 5': 2.893, 'Cluster 6': 2.6364, 'Cluster 7': 2.1764, 'Cluster 8': 1.6098, 'Cluster 9': 1.4699, 'Cluster 10': 0.7633, 'Cluster 11': 0.6933, 'Cluster 12': 0.6499, 'Cluster 13': 0.6199, 'Cluster 14': 0.579... | {'2': 0.3791449174941764, '3': 0.39184320836230885, '4': 0.33458982061505677, '5': 0.27276921966856194, '6': 0.30192250166251855, '7': 0.2755633424117647, '8': 0.28643006929162035} | {'0': [], '1': [1, 2, 4, 6, 7, 8, 14, 16, 17, 20, 22, 23], '2': [5, 9, 11, 12, 21], '3': [0, 15, 19], '4': [3, 10, 13, 18]} | {'explained_variance_ratio': [0.1774775595179495, 0.09748442872290632, 0.07110051163479805, 0.057590596792029866, 0.03979481149966136, 0.034290319151407435, 0.02918186754132658, 0.025110835245841873, 0.023008399779149032, 0.021481100937567513], 'cumulative_variance': [0.1774775595179495, 0.2749619882408558, 0.346062499... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4[LFucpa1-3]DGlcpa1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-4)[Fuc(a1-3)]Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→3)]-α-D-Glcp-(1→ | G18495FA | WURCS=2.0/4,9,8/[a2122h-1a_1-5][a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3-2-4-3-2-4-2/a3-b1_a4-c1_c3-d1_c4-e1_e3-f1_f3-g1_f4-h1_h2-i1 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4[LFucpa1-3]DGlcpb1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-4)[Fuc(a1-3)]Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→3)]-β-D-Glcp-(1→ | G70379IZ | WURCS=2.0/4,9,8/[a2122h-1b_1-5][a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3-2-4-3-2-4-2/a3-b1_a4-c1_c3-d1_c4-e1_e3-f1_f3-g1_f4-h1_h2-i1 | null | null | null | {'GAL9-FUC10': {'2': {'phi': -65.1, 'psi': 154.29, 'strain': 1.498, 'linkage': '1-2'}, '3': {'phi': -65.45, 'psi': 149.46, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -66.83, 'psi': 136.15, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -77.86, 'psi': 138.95, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -66.... | {'GAL9-FUC10': {'2': {'phi': -65.1, 'psi': 154.29, 'strain': 1.498, 'linkage': '1-2'}, '3': {'phi': -65.45, 'psi': 149.48, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -66.8, 'psi': 136.13, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -77.77, 'psi': 138.94, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -66.6... | {'GAL9-FUC10': {'2': {'phi': -65.1, 'psi': 154.29, 'strain': 1.498, 'linkage': '1-2'}, '3': {'phi': -65.45, 'psi': 149.46, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -66.83, 'psi': 136.15, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -77.86, 'psi': 138.95, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -66.... | null | 9 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G23154TX', 'url': 'https://www.glygen.org/glycan/G23154TX'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G94235HZ', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G94235... | {'id': '491970272', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491970272', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G94235HZ', 'url': 'https://glytoucan.org/Structures/Glycans/G94235HZ', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G94235HZ', 'url': 'https://sandbox.... | 1,844.95 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 218 | Saccharide | HexNAc(2)Hex(3)dHex(4) % 1494.55941589 | freeEnd--?D-Glc(--3a1L-Fuc,p)--4b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis... | {'related_accession': 'G50290HR', 'relationship': 'ancestor'};{'related_accession': 'G65142PC', 'relationship': 'ancestor'};{'related_accession': 'G94458CS', 'relationship': 'ancestor'};{'related_accession': 'G65142PC', 'relationship': 'basecomposition'};{'related_accession': 'G50290HR', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00058/snfg.svg | ./torsion_data/GS00058_torsion_data.txt | {'Cluster 0': {'count': 22030, '3_2_phi_mean': -76.0, '3_2_psi_mean': 117.85, '3_2_phi_std': 17.63, '3_2_psi_std': 16.27}, 'Cluster 1': {'count': 19250, '3_2_phi_mean': -77.96, '3_2_psi_mean': 115.31, '3_2_phi_std': 19.17, '3_2_psi_std': 20.9}, 'Cluster 2': {'count': 10466, '3_2_phi_mean': -73.91, '3_2_psi_mean': 115.0... | G46726NY | GS00058 | DNeup5Gca2-6DGalpb1-4DGlcpNAca1-OH | DNeup5Gca2-6DGalpb1-4DGlcpNAc | Neu5Gc(a2-6)Gal(b1-4)GlcNAc | α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-D-GlcNAc | WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3/a4-b1_b6-c2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-glycolyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3o(6+2)4d,4:4d(5+1)5n, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(=O)CO)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H](O)[C@H](O)[C@H]2O)[C@H]1CO | null | 690.23 | null | Neu5Gc(a2-6) | {'Neu5Gc': 1, 'Gal': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Gc': 1} | 13 | 14 | 20 | 10.281703 | {'Cluster 0': 36.71, 'Cluster 1': 32.08, 'Cluster 2': 17.44, 'Cluster 3': 8.02, 'Cluster 4': 5.74} | {'Cluster 0': 57.1793, 'Cluster 1': 12.5887, 'Cluster 2': 6.9993, 'Cluster 3': 4.7045, 'Cluster 4': 3.3147, 'Cluster 5': 2.5831, 'Cluster 6': 2.5081, 'Cluster 7': 2.2281, 'Cluster 8': 1.9848, 'Cluster 9': 1.7515, 'Cluster 10': 1.4015, 'Cluster 11': 1.1499, 'Cluster 12': 0.8566, 'Cluster 13': 0.45, 'Cluster 14': 0.3} | {'2': 0.3525509970761972, '3': 0.33230786016478414, '4': 0.33214542689119425, '5': 0.36614235925941463, '6': 0.3561366622345227, '7': 0.2785744648027625, '8': 0.29505299319201284} | {'0': [1, 3, 5, 7, 14], '1': [2, 9, 10, 11, 12], '2': [8, 13], '3': [0], '4': [4, 6]} | {'explained_variance_ratio': [0.19148071827951116, 0.09506263057533662, 0.062183631496467974, 0.05385079947837539, 0.04836886178170625, 0.040752139882081276, 0.03131629614448178, 0.03094387644971864, 0.029819947395301603, 0.026091534199855826], 'cumulative_variance': [0.19148071827951116, 0.2865433488548478, 0.34872698... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Gca2-6DGalpb1-4DGlcpNAca1-OH | Neu5Gc(a2-6)Gal(b1-4)GlcNAc(a1- | α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-α-D-GlcpNAc-(1→ | G10429XU | WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3/a4-b1_b6-c2 | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-OH | Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1- | α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→ | G24684AO | WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3/a4-b1_b6-c2 | null | null | null | {'NDG2-GAL3': {'2': {'phi': -67.8, 'psi': 123.72, 'strain': 0.031, 'linkage': '1-4'}, '3': {'phi': -71.92, 'psi': 114.53, 'strain': -0.0, 'linkage': '1-4'}, '4': {'phi': -73.37, 'psi': 120.51, 'strain': 0.008, 'linkage': '1-4'}, '5': {'phi': -81.44, 'psi': -69.49, 'strain': 2.135, 'linkage': '1-4'}, '6': {'phi': -44.45... | {'NDG2-GAL3': {'2': {'phi': -67.8, 'psi': 123.72, 'strain': 0.031, 'linkage': '1-4'}, '3': {'phi': -71.86, 'psi': 114.55, 'strain': -0.0, 'linkage': '1-4'}, '4': {'phi': -73.32, 'psi': 120.43, 'strain': 0.008, 'linkage': '1-4'}, '5': {'phi': -81.49, 'psi': -69.42, 'strain': 2.135, 'linkage': '1-4'}, '6': {'phi': -44.44... | {'NDG2-GAL3': {'2': {'phi': -67.8, 'psi': 123.72, 'strain': 0.031, 'linkage': '1-4'}, '3': {'phi': -71.92, 'psi': 114.53, 'strain': -0.0, 'linkage': '1-4'}, '4': {'phi': -73.37, 'psi': 120.51, 'strain': 0.008, 'linkage': '1-4'}, '5': {'phi': -81.44, 'psi': -69.49, 'strain': 2.135, 'linkage': '1-4'}, '6': {'phi': -44.45... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00059/snfg.svg | ./torsion_data/GS00059_torsion_data.txt | {'Cluster 0': {'count': 13658, '3_2_phi_mean': -79.58, '3_2_psi_mean': 96.17, '4_3_phi_mean': -86.52, '4_3_psi_mean': -126.42, '8_4_phi_mean': 77.08, '8_4_psi_mean': 90.04, '5_4_phi_mean': 72.6, '5_4_psi_mean': 130.43, '6_5_phi_mean': -81.22, '6_5_psi_mean': -85.46, '7_6_phi_mean': -73.86, '7_6_psi_mean': -113.6, '11_8... | G41576FY | GS00059 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/5,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-4-2-5-2-5/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dgal-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | A3G3 | 2,005.72 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Gal(b1-4) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3} | {'Hex': 6, 'HexNAc': 5} | 36 | 35 | 56 | 13.391264 | {'Cluster 0': 30.35, 'Cluster 1': 21.0, 'Cluster 2': 20.22, 'Cluster 3': 14.49, 'Cluster 4': 13.94} | {'Cluster 0': 12.7556, 'Cluster 1': 8.3156, 'Cluster 2': 8.1822, 'Cluster 3': 7.7489, 'Cluster 4': 7.4311, 'Cluster 5': 6.9111, 'Cluster 6': 6.7267, 'Cluster 7': 5.2711, 'Cluster 8': 5.2333, 'Cluster 9': 5.0133, 'Cluster 10': 4.0889, 'Cluster 11': 3.1, 'Cluster 12': 2.8867, 'Cluster 13': 2.4889, 'Cluster 14': 2.1489, '... | {'2': 0.2737389867516986, '3': 0.3825863853986806, '4': 0.31673884505038896, '5': 0.30670833162085415, '6': 0.32735936709245844, '7': 0.26938694465397683, '8': 0.2534216934384875} | {'0': [6, 17, 21, 23], '1': [2, 5, 9, 11, 18, 22, 24], '2': [7, 8, 19], '3': [1, 3, 10, 12, 14, 15, 20, 25], '4': [0, 4, 13, 16, 26]} | {'explained_variance_ratio': [0.16269626075760027, 0.10458686358889573, 0.07716532251986293, 0.07496735760608549, 0.06042789251638044, 0.049502299830221835, 0.03149162583516652, 0.021627099895143297, 0.018773171104154215, 0.017340606490665697], 'cumulative_variance': [0.16269626075760027, 0.267283124346496, 0.344448446... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G07800DZ | WURCS=2.0/5,11,10/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-4-2-5-2-5/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G79809MM | WURCS=2.0/4,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-3-1-4-1-4/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1 | A3G3 | null | N-Glycan | {'MAN5-NAG6': {'2': {'phi': -74.99, 'psi': -82.55, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -70.85, 'psi': -85.22, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -77.82, 'psi': -84.5, 'strain': 0.234, 'linkage': '1-2'}, '5': {'phi': -81.99, 'psi': -79.64, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -75.29... | {'MAN5-NAG6': {'2': {'phi': -74.99, 'psi': -82.55, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -70.84, 'psi': -85.21, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -77.8, 'psi': -84.5, 'strain': 0.234, 'linkage': '1-2'}, '5': {'phi': -81.96, 'psi': -79.61, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -75.21,... | {'MAN5-NAG6': {'2': {'phi': -74.99, 'psi': -82.55, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -70.85, 'psi': -85.22, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -77.82, 'psi': -84.5, 'strain': 0.234, 'linkage': '1-2'}, '5': {'phi': -81.99, 'psi': -79.64, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -75.29... | {'taxon_id': '9685', 'taxon_label': 'Felis catus (domestic cat)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G41576FY'}]};{'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycan... | 11 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G79809MM', 'url': 'https://www.glygen.org/glycan/G79809MM'}, {'database': 'Subsumption', 'id': 'G93788SW', 'url': 'https://www.glygen.org/glycan/G93788SW'}], 'common_name': 'Bovine', 'glygen_name'... | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G41576FY', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491851572', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491851572', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '3378', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '13378', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+13378', 'database': 'Ca... | 2,496.27 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 179 | Saccharide | HexNAc(5)Hex(6) % 2005.72436872 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G04964ME', 'relationship': 'ancestor'};{'related_accession': 'G35691FR', 'relationship': 'ancestor'};{'related_accession': 'G49778TF', 'relationship': 'ancestor'};{'related_accession': 'G50293LU', 'relationship': 'ancestor'};{'related_accession': 'G54709AG', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00060/snfg.svg | ./torsion_data/GS00060_torsion_data.txt | {'Cluster 0': {'count': 2303, '3_2_phi_mean': -79.48, '3_2_psi_mean': 95.13, '4_3_phi_mean': -75.56, '4_3_psi_mean': -118.17, '8_4_phi_mean': 72.18, '8_4_psi_mean': -60.76, '5_4_phi_mean': 72.58, '5_4_psi_mean': 110.71, '6_5_phi_mean': -78.14, '6_5_psi_mean': -85.82, '7_6_phi_mean': -76.13, '7_6_psi_mean': -118.58, '12... | G09276TA | GS00060 | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-4-2-5-6-2-5/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h4-i1_i3-j2_k4-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,15s:n-acetyl,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:b-dgal-HEX-1:5... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O... | A3G3S1 | 2,296.82 | {'motif': 'G00065MO', 'motif_label': 'Polysialic acid'};{'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'} | Gal(b1-4);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1} | 43 | 40 | 64 | 13.548768 | {'Cluster 0': 25.59, 'Cluster 1': 22.52, 'Cluster 2': 20.2, 'Cluster 3': 18.39, 'Cluster 4': 13.3} | {'Cluster 0': 13.3667, 'Cluster 1': 8.9667, 'Cluster 2': 7.0889, 'Cluster 3': 6.4889, 'Cluster 4': 6.4444, 'Cluster 5': 5.8444, 'Cluster 6': 5.5111, 'Cluster 7': 5.2889, 'Cluster 8': 4.8667, 'Cluster 9': 3.6778, 'Cluster 10': 3.6444, 'Cluster 11': 3.3, 'Cluster 12': 3.1778, 'Cluster 13': 3.1, 'Cluster 14': 2.6556, 'Clu... | {'2': 0.26483641152518617, '3': 0.3969435504187511, '4': 0.3936263283100228, '5': 0.39366319692436674, '6': 0.39354794294947676, '7': 0.3917006038402667, '8': 0.368419036123267} | {'0': [1, 8, 12, 17, 19, 22, 27], '1': [4, 5, 11, 13, 20, 21, 23, 25], '2': [3, 7, 9, 18, 24, 26], '3': [2, 6, 10, 14, 15, 16], '4': [0]} | {'explained_variance_ratio': [0.17147148241480678, 0.12490313682294372, 0.10858714514125552, 0.06321721007882754, 0.051943807162375295, 0.03874077760443039, 0.03121977032491559, 0.024897457780094782, 0.023175198140927847, 0.016323913696570092], 'cumulative_variance': [0.17147148241480678, 0.2963746192377505, 0.40496176... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G82080SP | WURCS=2.0/6,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-4-2-5-6-2-5/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h4-i1_i3-j2_k4-l1 | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G11034PZ | WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-3-1-4-5-1-4/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h4-i1_i3-j2_k4-l1 | A3G3S1 | null | N-Glycan | {'MAN5-NAG6': {'2': {'phi': -77.09, 'psi': -104.61, 'strain': 1.516, 'linkage': '1-2'}, '3': {'phi': -71.91, 'psi': -87.28, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -82.07, 'psi': -44.35, 'strain': 2.128, 'linkage': '1-2'}, '5': {'phi': -84.33, 'psi': -64.53, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -56.... | {'MAN5-NAG6': {'2': {'phi': -77.09, 'psi': -104.61, 'strain': 1.516, 'linkage': '1-2'}, '3': {'phi': -71.91, 'psi': -87.28, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -82.04, 'psi': -44.45, 'strain': 2.128, 'linkage': '1-2'}, '5': {'phi': -84.33, 'psi': -64.51, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -56.... | {'MAN5-NAG6': {'2': {'phi': -77.09, 'psi': -104.61, 'strain': 1.516, 'linkage': '1-2'}, '3': {'phi': -71.91, 'psi': -87.28, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -82.07, 'psi': -44.35, 'strain': 2.128, 'linkage': '1-2'}, '5': {'phi': -84.33, 'psi': -64.53, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -56.... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G09276TA'}]} | 12 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G09276TA', 'url': 'https://glycosmos.org/glycans/show/G09276TA'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G09276TA', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491841144', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491841144', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '16451', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '11993', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+11993', 'database': 'C... | 2,857.45 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 164 | Saccharide | HexNAc(5)Hex(6)NeuAc(1) % 2296.81978536 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G08670FK', 'relationship': 'ancestor'};{'related_accession': 'G33438CM', 'relationship': 'ancestor'};{'related_accession': 'G40926MX', 'relationship': 'ancestor'};{'related_accession': 'G52223PR', 'relationship': 'ancestor'};{'related_accession': 'G52478RN', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00061/snfg.svg | ./torsion_data/GS00061_torsion_data.txt | {'Cluster 0': {'count': 3162, '3_2_phi_mean': -79.82, '3_2_psi_mean': 96.95, '4_3_phi_mean': -79.76, '4_3_psi_mean': -120.95, '9_4_phi_mean': 72.65, '9_4_psi_mean': 48.66, '5_4_phi_mean': 72.69, '5_4_psi_mean': 124.9, '6_5_phi_mean': -81.73, '6_5_psi_mean': -85.35, '7_6_phi_mean': -76.17, '7_6_psi_mean': -118.65, '12_9... | G48488XT | GS00061 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5-2-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_h6-k1_i4-j1_k4-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:b-dgal-HEX-1:5... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | null | 2,296.82 | {'motif': 'G00065MO', 'motif_label': 'Polysialic acid'};{'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'} | Gal(b1-4);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1} | 43 | 40 | 64 | 14.013283 | {'Cluster 0': 35.13, 'Cluster 1': 25.06, 'Cluster 2': 21.19, 'Cluster 3': 12.77, 'Cluster 4': 5.86} | {'Cluster 0': 10.8444, 'Cluster 1': 9.1222, 'Cluster 2': 8.0556, 'Cluster 3': 6.9556, 'Cluster 4': 6.2444, 'Cluster 5': 5.8333, 'Cluster 6': 5.1556, 'Cluster 7': 4.9778, 'Cluster 8': 4.4222, 'Cluster 9': 4.2444, 'Cluster 10': 4.0667, 'Cluster 11': 3.6111, 'Cluster 12': 3.3556, 'Cluster 13': 2.5556, 'Cluster 14': 2.2, '... | {'2': 0.32865728339386663, '3': 0.29830122778264545, '4': 0.35141733996073043, '5': 0.37201977007632925, '6': 0.3362255348756313, '7': 0.32565345341519086, '8': 0.3243891948371793} | {'0': [3, 10, 12, 19, 22], '1': [5, 11, 23, 29, 30], '2': [1, 8, 14, 25, 26], '3': [0, 4, 6, 9, 15, 16, 18, 21, 24, 27], '4': [2, 7, 13, 17, 20, 28]} | {'explained_variance_ratio': [0.1632128362413742, 0.1342816445211382, 0.09330817986083245, 0.0537451630988159, 0.04664976735579804, 0.03500254903239927, 0.03353661492829197, 0.029315281580821594, 0.02086948195089299, 0.019053488034387275], 'cumulative_variance': [0.1632128362413742, 0.2974944807625124, 0.39080266062334... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G78693SJ | WURCS=2.0/6,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5-2-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_h6-k1_i4-j1_k4-l1 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G96963QG | WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-4-1-4/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_h6-k1_i4-j1_k4-l1 | null | null | N-Glycan | {'MAN5-NAG6': {'2': {'phi': -62.46, 'psi': -79.92, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -89.88, 'psi': -84.49, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -80.48, 'psi': -48.14, 'strain': 2.128, 'linkage': '1-2'}, '5': {'phi': -60.04, 'psi': -69.86, 'strain': 0.982, 'linkage': '1-2'}, '6': {'phi': -74.... | {'MAN5-NAG6': {'2': {'phi': -62.46, 'psi': -79.92, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -89.98, 'psi': -84.46, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -80.45, 'psi': -48.16, 'strain': 2.128, 'linkage': '1-2'}, '5': {'phi': -60.07, 'psi': -69.84, 'strain': 0.982, 'linkage': '1-2'}, '6': {'phi': -74.... | {'MAN5-NAG6': {'2': {'phi': -62.46, 'psi': -79.92, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -89.88, 'psi': -84.49, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -80.48, 'psi': -48.14, 'strain': 2.128, 'linkage': '1-2'}, '5': {'phi': -60.04, 'psi': -69.86, 'strain': 0.982, 'linkage': '1-2'}, '6': {'phi': -74.... | null | 12 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G48488XT', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491853716', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491853716', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '16591', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '8059', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+8059', 'database': 'Car... | 2,857.45 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 164 | Saccharide | HexNAc(5)Hex(6)NeuAc(1) % 2296.81978536 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G40926MX', 'relationship': 'ancestor'};{'related_accession': 'G52223PR', 'relationship': 'ancestor'};{'related_accession': 'G52478RN', 'relationship': 'ancestor'};{'related_accession': 'G82854VG', 'relationship': 'ancestor'};{'related_accession': 'G52478RN', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00062/snfg.svg | ./torsion_data/GS00062_torsion_data.txt | {'Cluster 0': {'count': 3281, '3_2_phi_mean': -78.84, '3_2_psi_mean': 96.34, '4_3_phi_mean': -75.4, '4_3_psi_mean': -110.5, '8_4_phi_mean': 74.37, '8_4_psi_mean': -96.28, '5_4_phi_mean': 70.13, '5_4_psi_mean': 120.78, '6_5_phi_mean': -79.9, '6_5_psi_mean': -89.83, '7_6_phi_mean': -77.54, '7_6_psi_mean': -123.22, '11_8_... | G60474DY | GS00062 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-4-2-5-2-5-6/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1_k3-l2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dgal-HEX-1:5,17b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,18s:n-acetyl... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[... | A3G3S1 | 2,296.82 | null | Gal(b1-4);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1} | 1 | 5 | 6 | 13.801479 | {'Cluster 0': 36.46, 'Cluster 1': 23.71, 'Cluster 2': 16.83, 'Cluster 3': 16.27, 'Cluster 4': 6.73} | {'Cluster 0': 13.4222, 'Cluster 1': 12.8222, 'Cluster 2': 9.7556, 'Cluster 3': 7.3, 'Cluster 4': 5.9111, 'Cluster 5': 5.5, 'Cluster 6': 5.3444, 'Cluster 7': 4.6, 'Cluster 8': 3.6889, 'Cluster 9': 3.4333, 'Cluster 10': 3.2444, 'Cluster 11': 2.6667, 'Cluster 12': 2.3778, 'Cluster 13': 2.1333, 'Cluster 14': 2.1, 'Cluster ... | {'2': 0.38651147970711075, '3': 0.36075318358289143, '4': 0.3774768934455733, '5': 0.2934769937562003, '6': 0.36990837258117054, '7': 0.3280685868473163, '8': 0.3380215513073883} | {'0': [11], '1': [2, 5, 7, 13, 16, 20, 24, 25], '2': [0, 1, 6, 12, 14, 15, 19, 21, 26, 27], '3': [4, 8, 17, 18, 23, 29], '4': [3, 9, 10, 22, 28]} | {'explained_variance_ratio': [0.19755610896896555, 0.10671958967868264, 0.06665551208141693, 0.05420142753211645, 0.04787648827591488, 0.039366809090840414, 0.03517654836374514, 0.026303247734077422, 0.02035517078755184, 0.019204443168170566], 'cumulative_variance': [0.19755610896896555, 0.3042756986476482, 0.370931210... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G20768QM | WURCS=2.0/6,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-4-2-5-2-5-6/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1_k3-l2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G71405MT | WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-3-1-4-1-4-5/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1_k3-l2 | A3G3S1 | null | Biantennary N-Glycan;Complex N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -79.82, 'psi': -108.29, 'strain': 1.516, 'linkage': '1-2'}, '3': {'phi': -80.86, 'psi': -74.11, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -102.82, 'psi': -74.28, 'strain': 0.927, 'linkage': '1-2'}, '5': {'phi': -99.28, 'psi': -86.27, 'strain': 0.71, 'linkage': '1-2'}, '6': {'phi': -58.... | {'MAN5-NAG6': {'2': {'phi': -79.82, 'psi': -108.29, 'strain': 1.516, 'linkage': '1-2'}, '3': {'phi': -80.8, 'psi': -74.21, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -102.79, 'psi': -74.3, 'strain': 0.927, 'linkage': '1-2'}, '5': {'phi': -99.29, 'psi': -86.3, 'strain': 0.71, 'linkage': '1-2'}, '6': {'phi': -58.75,... | {'MAN5-NAG6': {'2': {'phi': -79.82, 'psi': -108.29, 'strain': 1.516, 'linkage': '1-2'}, '3': {'phi': -80.86, 'psi': -74.11, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -102.82, 'psi': -74.28, 'strain': 0.927, 'linkage': '1-2'}, '5': {'phi': -99.28, 'psi': -86.27, 'strain': 0.71, 'linkage': '1-2'}, '6': {'phi': -58.... | null | 12 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G60474DY', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': 'G60474DY', 'url': 'https://glytoucan.org/Structures/Glycans/G60474DY', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G60474DY', 'url': 'https://sandbox.glyomics.org/explore.html?G60474DY', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G60474DY', 'url': 'https://gnome.glyom... | 2,857.45 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 164 | Saccharide | HexNAc(5)Hex(6)NeuAc(1) % 2296.81978536 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G08670FK', 'relationship': 'ancestor'};{'related_accession': 'G40926MX', 'relationship': 'ancestor'};{'related_accession': 'G52223PR', 'relationship': 'ancestor'};{'related_accession': 'G52478RN', 'relationship': 'ancestor'};{'related_accession': 'G52478RN', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00063/snfg.svg | ./torsion_data/GS00063_torsion_data.txt | {'Cluster 0': {'count': 3297, '14_2_phi_mean': -77.86, '14_2_psi_mean': 49.28, '3_2_phi_mean': -77.67, '3_2_psi_mean': 92.29, '4_3_phi_mean': -77.78, '4_3_psi_mean': -122.06, '9_4_phi_mean': 76.62, '9_4_psi_mean': 65.7, '5_4_phi_mean': 73.86, '5_4_psi_mean': 129.44, '6_5_phi_mean': -77.34, '6_5_psi_mean': -86.91, '7_6_... | G23819TW | GS00063 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-2-5-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_h6-k1_i4-j1_k4-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:b-dgal-HEX-1:5... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | null | 2,442.88 | {'motif': 'G00065MO', 'motif_label': 'Polysialic acid'};{'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'} | Gal(b1-4);Fuc(a1-6);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 45 | 42 | 68 | 13.956123 | {'Cluster 0': 36.63, 'Cluster 1': 20.59, 'Cluster 2': 19.81, 'Cluster 3': 14.73, 'Cluster 4': 8.23} | {'Cluster 0': 18.9778, 'Cluster 1': 9.7889, 'Cluster 2': 9.6889, 'Cluster 3': 6.2778, 'Cluster 4': 5.1333, 'Cluster 5': 4.2889, 'Cluster 6': 3.9111, 'Cluster 7': 3.8444, 'Cluster 8': 3.3556, 'Cluster 9': 3.3333, 'Cluster 10': 2.5556, 'Cluster 11': 2.5111, 'Cluster 12': 2.3889, 'Cluster 13': 2.2111, 'Cluster 14': 2.1778... | {'2': 0.2426554954712872, '3': 0.4237319014577198, '4': 0.41999177519721387, '5': 0.3647251183579912, '6': 0.3953175753072896, '7': 0.3625490315159851, '8': 0.3295388012587019} | {'0': [4, 9, 10, 11, 15, 23, 28, 29], '1': [3, 7, 16, 22, 25, 26, 30], '2': [1, 17, 20], '3': [6, 12], '4': [0, 2, 5, 8, 13, 14, 18, 19, 21, 24, 27]} | {'explained_variance_ratio': [0.17895141118902488, 0.13713755336070596, 0.08547823361986359, 0.05183136056002352, 0.03828845096746268, 0.03516920323938975, 0.030181154675188983, 0.02625658612320919, 0.025244888431222145, 0.019932679997593804], 'cumulative_variance': [0.17895141118902488, 0.31608896454973084, 0.40156719... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G73197PO | WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-2-5-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_h6-k1_i4-j1_k4-l1 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G93582HM | WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4-1-4-6/a4-b1_a6-m1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_h6-k1_i4-j1_k4-l1 | null | null | Fucosylated N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -64.94, 'psi': -70.11, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -89.38, 'psi': -76.85, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -73.21, 'psi': -84.23, 'strain': 0.234, 'linkage': '1-2'}, '5': {'phi': -86.57, 'psi': -73.73, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -61.21... | {'MAN5-NAG6': {'2': {'phi': -64.94, 'psi': -70.11, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -89.33, 'psi': -76.9, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -73.2, 'psi': -84.19, 'strain': 0.234, 'linkage': '1-2'}, '5': {'phi': -86.62, 'psi': -73.72, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -61.28, ... | {'MAN5-NAG6': {'2': {'phi': -64.94, 'psi': -70.11, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -89.38, 'psi': -76.85, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -73.21, 'psi': -84.23, 'strain': 0.234, 'linkage': '1-2'}, '5': {'phi': -86.57, 'psi': -73.73, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -61.21... | {'taxon_id': '10029', 'taxon_label': 'Cricetulus griseus (Chinese hamster)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G23819TW'}]} | 13 | {'taxid': 10029, 'name': 'Cricetulus griseus', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G23819TW', 'url': 'https://glycosmos.org/glycans/show/G23819TW'}], 'common_name': 'Chinese hamster', 'glygen_name': 'Hamster', 'reference_species': 'Cricetulus griseus [10029]'} | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G23819TW', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491845713', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491845713', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '16876', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '2962', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+2962', 'database': 'Car... | 3,031.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 151 | Saccharide | HexNAc(5)Hex(6)dHex(1)NeuAc(1) % 2442.87769423 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G17168EK', 'relationship': 'ancestor'};{'related_accession': 'G44930VK', 'relationship': 'ancestor'};{'related_accession': 'G45787FF', 'relationship': 'ancestor'};{'related_accession': 'G54456ZM', 'relationship': 'ancestor'};{'related_accession': 'G79666IR', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00064/snfg.svg | ./torsion_data/GS00064_torsion_data.txt | {'Cluster 0': {'count': 2869, '14_2_phi_mean': -75.12, '14_2_psi_mean': 32.35, '3_2_phi_mean': -83.71, '3_2_psi_mean': 99.15, '4_3_phi_mean': -67.16, '4_3_psi_mean': -118.41, '8_4_phi_mean': 65.55, '8_4_psi_mean': 56.85, '5_4_phi_mean': 75.84, '5_4_psi_mean': 124.04, '6_5_phi_mean': -81.24, '6_5_psi_mean': -83.62, '7_6... | G56546LQ | GS00064 | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-6-2-5-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h4-i1_i3-j2_k4-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,15s:n-acetyl,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:b-dgal-HEX-1:5... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O... | FA3G3S1 | 2,442.88 | {'motif': 'G00065MO', 'motif_label': 'Polysialic acid'};{'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'} | Gal(b1-4);Fuc(a1-6);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 45 | 42 | 68 | 13.589316 | {'Cluster 0': 31.88, 'Cluster 1': 29.49, 'Cluster 2': 15.3, 'Cluster 3': 15.02, 'Cluster 4': 8.31} | {'Cluster 0': 20.4, 'Cluster 1': 18.3667, 'Cluster 2': 12.6444, 'Cluster 3': 6.0111, 'Cluster 4': 5.1, 'Cluster 5': 4.7667, 'Cluster 6': 3.6444, 'Cluster 7': 3.6222, 'Cluster 8': 3.0333, 'Cluster 9': 2.5333, 'Cluster 10': 2.1556, 'Cluster 11': 1.9889, 'Cluster 12': 1.7222, 'Cluster 13': 1.5889, 'Cluster 14': 1.4444, 'C... | {'2': 0.3734272204884129, '3': 0.41169280458057156, '4': 0.4617509566656466, '5': 0.39339300357045187, '6': 0.35574810009082386, '7': 0.354984279309508, '8': 0.3466063490964298} | {'0': [1, 3, 10, 13, 19, 21], '1': [0, 8], '2': [4, 11, 16, 25, 27], '3': [6, 15, 24], '4': [2, 5, 7, 9, 12, 14, 17, 18, 20, 22, 23, 26, 28]} | {'explained_variance_ratio': [0.15208822299433394, 0.12261998305154785, 0.07101506287119112, 0.06269427449933704, 0.05774504048349914, 0.04016744644593716, 0.03503597732922257, 0.03163480891827727, 0.02685003828423714, 0.02062932345932883], 'cumulative_variance': [0.15208822299433394, 0.2747082060458818, 0.345723268917... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G70586VP | WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-6-2-5-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h4-i1_i3-j2_k4-l1 | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G33528AU | WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-3-1-4-5-1-4-6/a4-b1_a6-m1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h4-i1_i3-j2_k4-l1 | FA3G3S1 | null | Fucosylated N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -82.94, 'psi': -76.01, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -92.52, 'psi': -60.98, 'strain': 0.567, 'linkage': '1-2'}, '4': {'phi': -76.1, 'psi': -68.27, 'strain': 0.515, 'linkage': '1-2'}, '5': {'phi': -88.57, 'psi': -70.66, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -67.85,... | {'MAN5-NAG6': {'2': {'phi': -82.94, 'psi': -76.01, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -92.55, 'psi': -60.92, 'strain': 0.567, 'linkage': '1-2'}, '4': {'phi': -76.07, 'psi': -68.3, 'strain': 0.515, 'linkage': '1-2'}, '5': {'phi': -88.53, 'psi': -70.7, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -67.87, ... | {'MAN5-NAG6': {'2': {'phi': -82.94, 'psi': -76.01, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -92.52, 'psi': -60.98, 'strain': 0.567, 'linkage': '1-2'}, '4': {'phi': -76.1, 'psi': -68.27, 'strain': 0.515, 'linkage': '1-2'}, '5': {'phi': -88.57, 'psi': -70.66, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -67.85,... | {'taxon_id': '10029', 'taxon_label': 'Cricetulus griseus (Chinese hamster)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G56546LQ'}]} | 13 | {'taxid': 10029, 'name': 'Cricetulus griseus', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G56546LQ', 'url': 'https://glycosmos.org/glycans/show/G56546LQ'}], 'common_name': 'Chinese hamster', 'glygen_name': 'Hamster', 'reference_species': 'Cricetulus griseus [10029]'} | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G56546LQ', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491856259', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491856259', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '16875', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '2963', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+2963', 'database': 'Car... | 3,031.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 151 | Saccharide | HexNAc(5)Hex(6)dHex(1)NeuAc(1) % 2442.87769423 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--6b1D-GlcNAc,p--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G17168EK', 'relationship': 'ancestor'};{'related_accession': 'G19992GW', 'relationship': 'ancestor'};{'related_accession': 'G44930VK', 'relationship': 'ancestor'};{'related_accession': 'G54456ZM', 'relationship': 'ancestor'};{'related_accession': 'G79666IR', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00065/snfg.svg | ./torsion_data/GS00065_torsion_data.txt | {'Cluster 0': {'count': 11243, '14_2_phi_mean': -76.7, '14_2_psi_mean': 19.54, '3_2_phi_mean': -77.38, '3_2_psi_mean': 102.21, '4_3_phi_mean': -76.19, '4_3_psi_mean': -125.2, '8_4_phi_mean': 72.58, '8_4_psi_mean': -82.01, '5_4_phi_mean': 69.84, '5_4_psi_mean': 116.34, '6_5_phi_mean': -79.89, '6_5_psi_mean': -90.45, '7_... | G23436FC | GS00065 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-2-5-6-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1_k3-l2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dgal-HEX-1:5,17b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,18s:n-acetyl... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[... | FA3G3S1 | 2,442.88 | {'motif': 'G00065MO', 'motif_label': 'Polysialic acid'};{'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'} | Gal(b1-4);Fuc(a1-6);Neu5Ac(a2-3) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 45 | 42 | 68 | 13.736913 | {'Cluster 0': 32.12, 'Cluster 1': 24.51, 'Cluster 2': 18.46, 'Cluster 3': 16.13, 'Cluster 4': 8.78} | {'Cluster 0': 15.9829, 'Cluster 1': 13.08, 'Cluster 2': 12.8657, 'Cluster 3': 8.5829, 'Cluster 4': 5.0114, 'Cluster 5': 4.7943, 'Cluster 6': 4.02, 'Cluster 7': 3.7543, 'Cluster 8': 3.5571, 'Cluster 9': 3.3657, 'Cluster 10': 3.3571, 'Cluster 11': 3.1314, 'Cluster 12': 2.6686, 'Cluster 13': 2.5971, 'Cluster 14': 2.1771, ... | {'2': 0.44292795113696704, '3': 0.4289452802392522, '4': 0.39606440569627654, '5': 0.34414506158313074, '6': 0.35341928437231623, '7': 0.25811330392317305, '8': 0.25446681870074195} | {'0': [5, 14, 16, 21], '1': [3, 10, 12, 13, 24], '2': [2, 6, 7, 11, 17, 22, 23, 26], '3': [1, 8, 15, 19], '4': [0, 4, 9, 18, 20, 25, 27, 28]} | {'explained_variance_ratio': [0.21988682987440186, 0.09569415200871964, 0.06812328118720222, 0.05067403068505454, 0.044489516354473825, 0.04026338916619948, 0.032821826966114506, 0.02780570649278148, 0.0244179544547699, 0.01748792817139975], 'cumulative_variance': [0.21988682987440186, 0.3155809818831215, 0.38370426307... | 3.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G59670YR | WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-2-5-6-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1_k3-l2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G59315XJ | WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-3-1-4-1-4-5-6/a4-b1_a6-m1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1_k3-l2 | FA3G3S1 | null | Biantennary N-Glycan;Complex N-Glycan;Fucosylated N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -68.44, 'psi': -105.46, 'strain': 1.809, 'linkage': '1-2'}, '3': {'phi': -77.52, 'psi': -78.4, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -80.16, 'psi': -68.02, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -78.04, 'psi': -58.66, 'strain': 1.265, 'linkage': '1-2'}, '6': {'phi': -60.9... | {'MAN5-NAG6': {'2': {'phi': -68.44, 'psi': -105.46, 'strain': 1.809, 'linkage': '1-2'}, '3': {'phi': -77.59, 'psi': -78.39, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -80.29, 'psi': -67.89, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -78.07, 'psi': -58.61, 'strain': 1.265, 'linkage': '1-2'}, '6': {'phi': -60.... | {'MAN5-NAG6': {'2': {'phi': -68.44, 'psi': -105.46, 'strain': 1.809, 'linkage': '1-2'}, '3': {'phi': -77.52, 'psi': -78.4, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -80.16, 'psi': -68.02, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -78.04, 'psi': -58.66, 'strain': 1.265, 'linkage': '1-2'}, '6': {'phi': -60.9... | {'taxon_id': '10029', 'taxon_label': 'Cricetulus griseus (Chinese hamster)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G23436FC'}]} | 13 | {'taxid': 10029, 'name': 'Cricetulus griseus', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G23436FC', 'url': 'https://glycosmos.org/glycans/show/G23436FC'}], 'common_name': 'Chinese hamster', 'glygen_name': 'Hamster', 'reference_species': 'Cricetulus griseus [10029]'} | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G23436FC', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491845599', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491845599', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '16874', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '2964', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+2964', 'database': 'Car... | 3,031.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 151 | Saccharide | HexNAc(5)Hex(6)dHex(1)NeuAc(1) % 2442.87769423 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G17168EK', 'relationship': 'ancestor'};{'related_accession': 'G19992GW', 'relationship': 'ancestor'};{'related_accession': 'G44930VK', 'relationship': 'ancestor'};{'related_accession': 'G54456ZM', 'relationship': 'ancestor'};{'related_accession': 'G79666IR', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00066/snfg.svg | ./torsion_data/GS00066_torsion_data.txt | {'Cluster 0': {'count': 4093, '14_2_phi_mean': -77.14, '14_2_psi_mean': 47.45, '3_2_phi_mean': -78.46, '3_2_psi_mean': 105.3, '4_3_phi_mean': -81.99, '4_3_psi_mean': -125.04, '8_4_phi_mean': 79.0, '8_4_psi_mean': 89.05, '5_4_phi_mean': 72.46, '5_4_psi_mean': 129.42, '6_5_phi_mean': -81.45, '6_5_psi_mean': -86.09, '7_6_... | G39809LE | GS00066 | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-6-2-5-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h4-i1_i6-j2_k4-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,15s:n-acetyl,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:b-dgal-HEX-1:5... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H](O)[... | FA3G3S1 | 2,442.88 | null | Gal(b1-4);Neu5Ac(a2-6);Fuc(a1-6) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 1 | 5 | 6 | 13.965888 | {'Cluster 0': 45.48, 'Cluster 1': 20.27, 'Cluster 2': 12.4, 'Cluster 3': 11.48, 'Cluster 4': 10.38} | {'Cluster 0': 22.1556, 'Cluster 1': 10.5333, 'Cluster 2': 10.1333, 'Cluster 3': 6.3, 'Cluster 4': 4.6444, 'Cluster 5': 4.2778, 'Cluster 6': 4.0778, 'Cluster 7': 3.7, 'Cluster 8': 3.6444, 'Cluster 9': 3.3222, 'Cluster 10': 3.0667, 'Cluster 11': 2.6556, 'Cluster 12': 2.6111, 'Cluster 13': 2.2889, 'Cluster 14': 1.9333, 'C... | {'2': 0.395269540516277, '3': 0.42323773930407166, '4': 0.5028511031862802, '5': 0.4776422197213002, '6': 0.428057799965979, '7': 0.30530192275366635, '8': 0.32652358927794245} | {'0': [0, 8, 12, 21, 26], '1': [3, 6, 11, 13, 23, 28, 30], '2': [1, 9, 16, 17, 18, 27], '3': [4, 7, 14, 20, 22], '4': [2, 5, 10, 15, 19, 24, 25, 29]} | {'explained_variance_ratio': [0.16737833386830248, 0.10126937982344345, 0.0788617193031374, 0.07015921974593596, 0.04907835193564622, 0.04043423656655276, 0.0378544386530833, 0.030965135421484533, 0.023612676555203056, 0.02002110711616112], 'cumulative_variance': [0.16737833386830248, 0.2686477136917459, 0.347509432994... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G86969ZH | WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-6-2-5-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h4-i1_i6-j2_k4-l1 | DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G12614YL | WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-3-1-4-5-1-4-6/a4-b1_a6-m1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h4-i1_i6-j2_k4-l1 | FA3G3S1 | null | Fucosylated N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -81.43, 'psi': -79.6, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -74.51, 'psi': -147.87, 'strain': 2.593, 'linkage': '1-2'}, '4': {'phi': -60.91, 'psi': -74.98, 'strain': 0.558, 'linkage': '1-2'}, '5': {'phi': -71.88, 'psi': -68.24, 'strain': 0.515, 'linkage': '1-2'}, '6': {'phi': -72.2... | {'MAN5-NAG6': {'2': {'phi': -81.43, 'psi': -79.6, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -74.55, 'psi': -147.83, 'strain': 2.593, 'linkage': '1-2'}, '4': {'phi': -60.95, 'psi': -74.98, 'strain': 0.558, 'linkage': '1-2'}, '5': {'phi': -71.93, 'psi': -68.22, 'strain': 0.515, 'linkage': '1-2'}, '6': {'phi': -72.2... | {'MAN5-NAG6': {'2': {'phi': -81.43, 'psi': -79.6, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -74.51, 'psi': -147.87, 'strain': 2.593, 'linkage': '1-2'}, '4': {'phi': -60.91, 'psi': -74.98, 'strain': 0.558, 'linkage': '1-2'}, '5': {'phi': -71.88, 'psi': -68.24, 'strain': 0.515, 'linkage': '1-2'}, '6': {'phi': -72.2... | null | 13 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G39809LE', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G39809LE', 'url': 'https://glytoucan.org/Structures/Glycans/G39809LE', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G39809LE', 'url': 'https://sandbox.glyomics.org/explore.html?G39809LE', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G39809LE', 'url': 'https://gnome.glyom... | 3,031.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 151 | Saccharide | HexNAc(5)Hex(6)dHex(1)NeuAc(1) % 2442.87769423 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p--6a2D-NeuAc,p)--6b1D-GlcNAc,p--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G17168EK', 'relationship': 'ancestor'};{'related_accession': 'G19992GW', 'relationship': 'ancestor'};{'related_accession': 'G44930VK', 'relationship': 'ancestor'};{'related_accession': 'G54456ZM', 'relationship': 'ancestor'};{'related_accession': 'G79666IR', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00067/snfg.svg | ./torsion_data/GS00067_torsion_data.txt | {'Cluster 0': {'count': 3200, '14_2_phi_mean': -77.87, '14_2_psi_mean': 37.25, '3_2_phi_mean': -78.22, '3_2_psi_mean': 107.64, '4_3_phi_mean': -76.08, '4_3_psi_mean': -122.05, '9_4_phi_mean': 73.97, '9_4_psi_mean': 47.27, '5_4_phi_mean': 72.91, '5_4_psi_mean': 130.78, '6_5_phi_mean': -81.23, '6_5_psi_mean': -84.43, '7_... | G33589SN | GS00067 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-2-5-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-k1_i4-j1_k4-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:b-dgal-HEX-1:5... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | null | 2,442.88 | null | Gal(b1-4);Neu5Ac(a2-6);Fuc(a1-6) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 45 | 42 | 68 | 14.201169 | {'Cluster 0': 35.56, 'Cluster 1': 27.56, 'Cluster 2': 15.58, 'Cluster 3': 11.46, 'Cluster 4': 9.86} | {'Cluster 0': 15.9556, 'Cluster 1': 15.7222, 'Cluster 2': 10.7556, 'Cluster 3': 9.0667, 'Cluster 4': 3.7778, 'Cluster 5': 3.1222, 'Cluster 6': 2.9556, 'Cluster 7': 2.7333, 'Cluster 8': 2.6, 'Cluster 9': 2.5444, 'Cluster 10': 2.3889, 'Cluster 11': 2.2111, 'Cluster 12': 2.0556, 'Cluster 13': 2.0222, 'Cluster 14': 2.0, 'C... | {'2': 0.36041120347502154, '3': 0.3731558399454808, '4': 0.40664691833631694, '5': 0.375163293977869, '6': 0.33638449793974917, '7': 0.31277675506025326, '8': 0.32582060600158597} | {'0': [1, 6, 9, 17, 18, 30], '1': [3, 5, 15, 23, 25, 29], '2': [2, 7, 10, 11, 13, 21, 27], '3': [0, 8, 12, 14, 16, 20, 22, 24, 28, 31], '4': [4, 19, 26]} | {'explained_variance_ratio': [0.16536536015001194, 0.13477356033530336, 0.07926972392381774, 0.06263732569751, 0.04970073521074255, 0.0405141067796533, 0.030386634098760527, 0.02630580910378362, 0.02216500621525978, 0.018352014010060945], 'cumulative_variance': [0.16536536015001194, 0.3001389204853153, 0.37940864440913... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G96629BQ | WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-2-5-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-k1_i4-j1_k4-l1 | DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G85255JJ | WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4-1-4-6/a4-b1_a6-m1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-k1_i4-j1_k4-l1 | null | null | Fucosylated N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -90.75, 'psi': -78.61, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -84.83, 'psi': -79.89, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -95.48, 'psi': -119.11, 'strain': 2.236, 'linkage': '1-2'}, '5': {'phi': -85.06, 'psi': -73.32, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -68.4... | {'MAN5-NAG6': {'2': {'phi': -90.75, 'psi': -78.61, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -84.85, 'psi': -79.83, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -95.47, 'psi': -119.12, 'strain': 2.236, 'linkage': '1-2'}, '5': {'phi': -85.03, 'psi': -73.37, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -68.3... | {'MAN5-NAG6': {'2': {'phi': -90.75, 'psi': -78.61, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -84.83, 'psi': -79.89, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -95.48, 'psi': -119.11, 'strain': 2.236, 'linkage': '1-2'}, '5': {'phi': -85.06, 'psi': -73.32, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -68.4... | null | 13 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G33589SN', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G33589SN', 'url': 'https://glytoucan.org/Structures/Glycans/G33589SN', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G33589SN', 'url': 'https://sandbox.glyomics.org/explore.html?G33589SN', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G33589SN', 'url': 'https://gnome.glyom... | 3,031.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 151 | Saccharide | HexNAc(5)Hex(6)dHex(1)NeuAc(1) % 2442.87769423 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p--6a2D-NeuAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G17168EK', 'relationship': 'ancestor'};{'related_accession': 'G44930VK', 'relationship': 'ancestor'};{'related_accession': 'G45787FF', 'relationship': 'ancestor'};{'related_accession': 'G54456ZM', 'relationship': 'ancestor'};{'related_accession': 'G79666IR', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00068/snfg.svg | ./torsion_data/GS00068_torsion_data.txt | {'Cluster 0': {'count': 2605, '14_2_phi_mean': -77.91, '14_2_psi_mean': 46.57, '3_2_phi_mean': -78.1, '3_2_psi_mean': 108.21, '4_3_phi_mean': -79.31, '4_3_psi_mean': -122.36, '8_4_phi_mean': 76.19, '8_4_psi_mean': 69.21, '5_4_phi_mean': 72.58, '5_4_psi_mean': 123.67, '6_5_phi_mean': -77.81, '6_5_psi_mean': -84.41, '7_6... | G09557SC | GS00068 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-2-5-6-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1_k6-l2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dgal-HEX-1:5,17b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,18s:n-acetyl... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[... | FA3G3S1 | 2,442.88 | null | Gal(b1-4);Neu5Ac(a2-6);Fuc(a1-6) | {'GlcNAc': 5, 'Gal': 3, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 1 | 5 | 6 | 14.104358 | {'Cluster 0': 28.94, 'Cluster 1': 27.01, 'Cluster 2': 20.72, 'Cluster 3': 14.06, 'Cluster 4': 9.27} | {'Cluster 0': 19.4222, 'Cluster 1': 11.9222, 'Cluster 2': 9.0889, 'Cluster 3': 7.7, 'Cluster 4': 7.6333, 'Cluster 5': 6.5778, 'Cluster 6': 5.7778, 'Cluster 7': 4.4778, 'Cluster 8': 3.8667, 'Cluster 9': 2.9111, 'Cluster 10': 2.3444, 'Cluster 11': 2.2889, 'Cluster 12': 1.9222, 'Cluster 13': 1.8444, 'Cluster 14': 1.7778, ... | {'2': 0.44954791087818274, '3': 0.41240527405272903, '4': 0.3405013134005668, '5': 0.2932418369225465, '6': 0.29566793368904654, '7': 0.24774893989582553, '8': 0.24403743049494156} | {'0': [0, 15, 27], '1': [6, 9, 18, 22, 24], '2': [1, 2, 7, 8, 13, 20, 30], '3': [3, 5, 19, 23], '4': [4, 10, 11, 12, 14, 16, 17, 21, 25, 26, 28, 29, 31]} | {'explained_variance_ratio': [0.23104482796380532, 0.09322847767043752, 0.050142844726088716, 0.04392386159017386, 0.0424793182064264, 0.038870487883891545, 0.035211113907092265, 0.029701357508793182, 0.02332475376896683, 0.02256830986235191], 'cumulative_variance': [0.23104482796380532, 0.32427330563424284, 0.37441615... | 4.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G71813UC | WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-2-5-6-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1_k6-l2 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Gal(b1-4)GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G29741BF | WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-3-1-4-1-4-5-6/a4-b1_a6-m1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1_k6-l2 | FA3G3S1 | null | Biantennary N-Glycan;Complex N-Glycan;Fucosylated N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -77.17, 'psi': -85.66, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -101.01, 'psi': -85.8, 'strain': 1.301, 'linkage': '1-2'}, '4': {'phi': -75.94, 'psi': -139.25, 'strain': 2.369, 'linkage': '1-2'}, '5': {'phi': -80.39, 'psi': -123.73, 'strain': 1.753, 'linkage': '1-2'}, '6': {'phi': -6... | {'MAN5-NAG6': {'2': {'phi': -77.17, 'psi': -85.66, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -101.09, 'psi': -85.72, 'strain': 1.301, 'linkage': '1-2'}, '4': {'phi': -75.98, 'psi': -139.24, 'strain': 2.369, 'linkage': '1-2'}, '5': {'phi': -80.39, 'psi': -123.71, 'strain': 1.753, 'linkage': '1-2'}, '6': {'phi': -... | {'MAN5-NAG6': {'2': {'phi': -77.17, 'psi': -85.66, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -101.01, 'psi': -85.8, 'strain': 1.301, 'linkage': '1-2'}, '4': {'phi': -75.94, 'psi': -139.25, 'strain': 2.369, 'linkage': '1-2'}, '5': {'phi': -80.39, 'psi': -123.73, 'strain': 1.753, 'linkage': '1-2'}, '6': {'phi': -6... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00069/snfg.svg | ./torsion_data/GS00069_torsion_data.txt | {'Cluster 0': {'count': 17544, '4_2_phi_mean': -68.9, '4_2_psi_mean': 129.45, '3_2_phi_mean': -73.63, '3_2_psi_mean': -98.87, '4_2_phi_std': 12.12, '4_2_psi_std': 7.91, '3_2_phi_std': 19.57, '3_2_psi_std': 12.91}, 'Cluster 1': {'count': 9228, '4_2_phi_mean': -73.18, '4_2_psi_mean': 129.06, '3_2_phi_mean': -72.87, '3_2_... | G19865CT | GS00069 | DNeup5Gca2-3DGalpb1-4[LFucpa1-3]DGlcpNAca1-OH | DNeup5Gca2-3DGalpb1-4[LFucpa1-3]DGlcpNAc | Neu5Gc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc | α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-D-GlcNAc | WURCS=2.0/4,4,3/[u2122h_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:a-lgal-HEX-1:5|6:d,4b:b-dgal-HEX-1:5,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-glycolyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:1o(4+1)4d,4:4o(3+2)5d,5:5d(5+1)6n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(=O)CO)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@H]1CO | null | 836.29 | null | Fuc(a1-3);Neu5Gc(a2-3) | {'Neu5Gc': 1, 'Gal': 1, 'Fuc': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Gc': 1, 'dHex': 1} | 1 | 5 | 6 | 9.773829 | {'Cluster 0': 43.86, 'Cluster 1': 23.07, 'Cluster 2': 15.29, 'Cluster 3': 10.29, 'Cluster 4': 7.5} | {'Cluster 0': 27.1073, 'Cluster 1': 19.6005, 'Cluster 2': 18.1257, 'Cluster 3': 11.0089, 'Cluster 4': 5.3195, 'Cluster 5': 3.5271, 'Cluster 6': 3.3472, 'Cluster 7': 3.0422, 'Cluster 8': 2.5722, 'Cluster 9': 2.0848, 'Cluster 10': 1.9823, 'Cluster 11': 1.3974, 'Cluster 12': 0.8849} | {'2': 0.5763521712703733, '3': 0.4541307690286897, '4': 0.4409180629809097, '5': 0.49551693979031447, '6': 0.5246429001496706, '7': 0.52811876307752, '8': 0.4909700419052251} | {'0': [0, 5, 10], '1': [3, 8], '2': [1, 12], '3': [2, 7, 11], '4': [4, 6, 9]} | {'explained_variance_ratio': [0.2344975712222867, 0.12806966733276015, 0.09261381566428724, 0.04243073778861785, 0.036793019129719495, 0.031077726181207868, 0.025826604907730394, 0.021863713574084093, 0.019785485371357762, 0.015179006056692873], 'cumulative_variance': [0.2344975712222867, 0.36256723855504686, 0.4551810... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Gca2-3DGalpb1-4[LFucpa1-3]DGlcpNAca1-OH | Neu5Gc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(a1- | α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-α-D-GlcpNAc-(1→ | G65507RW | WURCS=2.0/4,4,3/[a2122h-1a_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2 | DNeup5Gca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-OH | Neu5Gc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1- | α-D-Neup5Gc-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→ | G29440SE | WURCS=2.0/4,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2 | null | null | null | {'NDG2-FUC3': {'2': {'phi': -68.47, 'psi': -105.78, 'strain': 0.087, 'linkage': '1-3'}, '3': {'phi': -70.44, 'psi': -93.81, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -71.01, 'psi': -89.13, 'strain': 0.702, 'linkage': '1-3'}, '5': {'phi': -84.79, 'psi': -118.26, 'strain': 1.279, 'linkage': '1-3'}, '6': {'phi': -68... | {'NDG2-FUC3': {'2': {'phi': -68.47, 'psi': -105.78, 'strain': 0.087, 'linkage': '1-3'}, '3': {'phi': -70.47, 'psi': -93.84, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -71.01, 'psi': -89.12, 'strain': 0.702, 'linkage': '1-3'}, '5': {'phi': -84.73, 'psi': -118.27, 'strain': 1.279, 'linkage': '1-3'}, '6': {'phi': -68... | {'NDG2-FUC3': {'2': {'phi': -68.47, 'psi': -105.78, 'strain': 0.087, 'linkage': '1-3'}, '3': {'phi': -70.44, 'psi': -93.81, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -71.01, 'psi': -89.13, 'strain': 0.702, 'linkage': '1-3'}, '5': {'phi': -84.79, 'psi': -118.26, 'strain': 1.279, 'linkage': '1-3'}, '6': {'phi': -68... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00070/snfg.svg | ./torsion_data/GS00070_torsion_data.txt | {'Cluster 0': {'count': 9207, '3_2_phi_mean': 78.9, '3_2_psi_mean': 91.3, '3_2_phi_std': 8.75, '3_2_psi_std': 10.57}, 'Cluster 1': {'count': 8873, '3_2_phi_mean': 77.79, '3_2_psi_mean': 92.68, '3_2_phi_std': 8.57, '3_2_psi_std': 10.17}, 'Cluster 2': {'count': 7086, '3_2_phi_mean': 61.98, '3_2_psi_mean': 77.35, '3_2_phi... | G25623VL | GS00070 | DGlcpa1-4DGlcpa1-OH | DGlcpa1-4DGlcp | Glc(a1-4)Glc | α-D-Glcp-(1→4)-D-Glc | WURCS=2.0/2,2,1/[u2122h][a2122h-1a_1-5]/1-2/a4-b1 | RES,1b:b-dglc-HEX-1:5,2b:a-dglc-HEX-1:5,LIN,1:1o(4+1)2d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H]1CO | null | 342.12 | null | Glc(a1-4) | {'Glc': 2} | {'Hex': 2} | 4 | 8 | 11 | 8.581425 | {'Cluster 0': 30.69, 'Cluster 1': 29.57, 'Cluster 2': 23.62, 'Cluster 3': 14.85, 'Cluster 4': 1.27} | {'Cluster 0': 57.1243, 'Cluster 1': 24.8908, 'Cluster 2': 7.8292, 'Cluster 3': 4.3829, 'Cluster 4': 3.8629, 'Cluster 5': 0.5933, 'Cluster 6': 0.3966, 'Cluster 7': 0.38, 'Cluster 8': 0.36, 'Cluster 9': 0.18} | {'2': 0.3780432896396564, '3': 0.3214223812286654, '4': 0.2808342840582075, '5': 0.2630530135238777, '6': 0.24520417976828043, '7': 0.22698766303463136, '8': 0.2268493551506415} | {'0': [5], '1': [1, 6, 7], '2': [2, 8], '3': [3, 4, 9], '4': [0]} | {'explained_variance_ratio': [0.15526599196272242, 0.10166582097081535, 0.06709831487478557, 0.05067052349315075, 0.03986880474000908, 0.0378728720012958, 0.034643958856040505, 0.028499334975032518, 0.02746409262664109, 0.025487396946249397], 'cumulative_variance': [0.15526599196272242, 0.2569318129335378, 0.3240301278... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGlcpa1-4DGlcpa1-OH | Glc(a1-4)Glc(a1- | α-D-Glcp-(1→4)-α-D-Glcp-(1→ | G07411ON | WURCS=2.0/1,2,1/[a2122h-1a_1-5]/1-1/a4-b1 | DGlcpa1-4DGlcpb1-OH | Glc(a1-4)Glc(b1- | α-D-Glcp-(1→4)-β-D-Glcp-(1→ | G66120GK | WURCS=2.0/2,2,1/[a2122h-1b_1-5][a2122h-1a_1-5]/1-2/a4-b1 | null | null | null | {'GLC2-GLC3': {'2': {'phi': 73.87, 'psi': 87.44, 'strain': 1.945, 'linkage': '1-4'}, '3': {'phi': 80.62, 'psi': 95.53, 'strain': 1.896, 'linkage': '1-4'}, '4': {'phi': 72.48, 'psi': 74.14, 'strain': 2.483, 'linkage': '1-4'}, '5': {'phi': 96.58, 'psi': 96.08, 'strain': 3.565, 'linkage': '1-4'}, '6': {'phi': 75.32, 'psi'... | {'GLC2-GLC3': {'2': {'phi': 73.87, 'psi': 87.44, 'strain': 1.945, 'linkage': '1-4'}, '3': {'phi': 80.66, 'psi': 95.58, 'strain': 1.896, 'linkage': '1-4'}, '4': {'phi': 72.41, 'psi': 74.2, 'strain': 2.483, 'linkage': '1-4'}, '5': {'phi': 96.57, 'psi': 96.09, 'strain': 3.565, 'linkage': '1-4'}, '6': {'phi': 75.34, 'psi':... | {'GLC2-GLC3': {'2': {'phi': 73.87, 'psi': 87.44, 'strain': 1.945, 'linkage': '1-4'}, '3': {'phi': 80.62, 'psi': 95.53, 'strain': 1.896, 'linkage': '1-4'}, '4': {'phi': 72.48, 'psi': 74.14, 'strain': 2.483, 'linkage': '1-4'}, '5': {'phi': 96.58, 'psi': 96.08, 'strain': 3.565, 'linkage': '1-4'}, '6': {'phi': 75.32, 'psi'... | {'taxon_id': '1578', 'taxon_label': 'Lactobacillus', 'evidence': [{'label': 'GlyTouCan(bcsdb)', 'id': 'glytoucan.org/Structures/Glycans/G25623VL'}]};{'taxon_id': '1313', 'taxon_label': 'Streptococcus pneumoniae', 'evidence': [{'label': 'GlyTouCan(bcsdb)', 'id': 'glytoucan.org/Structures/Glycans/G25623VL'}]} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00071/snfg.svg | ./torsion_data/GS00071_torsion_data.txt | {'Cluster 0': {'count': 15053, '5_2_phi_mean': -68.16, '5_2_psi_mean': 138.43, '3_2_phi_mean': -69.71, '3_2_psi_mean': -105.73, '5_2_phi_std': 8.41, '5_2_psi_std': 6.35, '3_2_phi_std': 7.38, '3_2_psi_std': 7.1}, 'Cluster 1': {'count': 10582, '5_2_phi_mean': -68.3, '5_2_psi_mean': 138.2, '3_2_phi_mean': -69.97, '3_2_psi... | G43416JO | GS00071 | DNeup5Gca2-3DGalpb1-3[LFucpa1-4]DGlcpNAca1-OH | DNeup5Gca2-3DGalpb1-3[LFucpa1-4]DGlcpNAc | Neu5Gc(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc | α-D-Neup5Gc-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-D-GlcNAc | WURCS=2.0/4,4,3/[u2122h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][a1221m-1a_1-5]/1-2-3-4/a3-b1_a4-d1_b3-c2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-glycolyl,6b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(3+2)4d,4:4d(5+1)5n,5:1o(4+1)6d, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(=O)CO)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@H]1CO | null | 836.29 | null | Neu5Gc(a2-3);Fuc(a1-4) | {'Neu5Gc': 1, 'Gal': 1, 'Fuc': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Gc': 1, 'dHex': 1} | 1 | 5 | 6 | 10.827128 | {'Cluster 0': 37.63, 'Cluster 1': 26.45, 'Cluster 2': 15.63, 'Cluster 3': 12.82, 'Cluster 4': 7.47} | {'Cluster 0': 38.5461, 'Cluster 1': 15.3135, 'Cluster 2': 12.7987, 'Cluster 3': 9.3266, 'Cluster 4': 6.6343, 'Cluster 5': 4.587, 'Cluster 6': 3.9596, 'Cluster 7': 2.7772, 'Cluster 8': 1.5223, 'Cluster 9': 1.3699, 'Cluster 10': 1.1599, 'Cluster 11': 0.8224, 'Cluster 12': 0.7024, 'Cluster 13': 0.34, 'Cluster 14': 0.105, ... | {'2': 0.39022379730081513, '3': 0.33258251654955684, '4': 0.4066674406208428, '5': 0.3857287115697801, '6': 0.3377329736172342, '7': 0.33333007685648086, '8': 0.2900717038051863} | {'0': [4, 7, 14], '1': [0, 11], '2': [6, 8], '3': [1, 2, 3, 9, 12, 13, 15], '4': [5, 10]} | {'explained_variance_ratio': [0.15725888349311068, 0.11522730706771674, 0.07822086032032519, 0.04087815941491839, 0.038942888546349606, 0.03451785928185958, 0.03111972952952932, 0.030592981797356592, 0.025026632473881198, 0.019406588587172806], 'cumulative_variance': [0.15725888349311068, 0.2724861905608274, 0.35070705... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Gca2-3DGalpb1-3[LFucpa1-4]DGlcpNAca1-OH | Neu5Gc(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(a1- | α-D-Neup5Gc-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-α-D-GlcpNAc-(1→ | G17998SL | WURCS=2.0/4,4,3/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][a1221m-1a_1-5]/1-2-3-4/a3-b1_a4-d1_b3-c2 | DNeup5Gca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-OH | Neu5Gc(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1- | α-D-Neup5Gc-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→ | G56052QV | WURCS=2.0/4,4,3/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][a1221m-1a_1-5]/1-2-3-4/a3-b1_a4-d1_b3-c2 | null | null | null | {'NDG2-GAL3': {'2': {'phi': -71.1, 'psi': -108.51, 'strain': 0.136, 'linkage': '1-3'}, '3': {'phi': -73.97, 'psi': -89.64, 'strain': 0.702, 'linkage': '1-3'}, '4': {'phi': -62.42, 'psi': -105.37, 'strain': 0.087, 'linkage': '1-3'}, '5': {'phi': -74.37, 'psi': -100.25, 'strain': 0.136, 'linkage': '1-3'}, '6': {'phi': -8... | {'NDG2-GAL3': {'2': {'phi': -71.1, 'psi': -108.51, 'strain': 0.136, 'linkage': '1-3'}, '3': {'phi': -73.95, 'psi': -89.63, 'strain': 0.702, 'linkage': '1-3'}, '4': {'phi': -62.4, 'psi': -105.4, 'strain': 0.087, 'linkage': '1-3'}, '5': {'phi': -74.27, 'psi': -100.21, 'strain': 0.136, 'linkage': '1-3'}, '6': {'phi': -82.... | {'NDG2-GAL3': {'2': {'phi': -71.1, 'psi': -108.51, 'strain': 0.136, 'linkage': '1-3'}, '3': {'phi': -73.97, 'psi': -89.64, 'strain': 0.702, 'linkage': '1-3'}, '4': {'phi': -62.42, 'psi': -105.37, 'strain': 0.087, 'linkage': '1-3'}, '5': {'phi': -74.37, 'psi': -100.25, 'strain': 0.136, 'linkage': '1-3'}, '6': {'phi': -8... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00072/snfg.svg | ./torsion_data/GS00072_torsion_data.txt | {'Cluster 0': {'count': 17249, '3_2_phi_mean': -71.84, '3_2_psi_mean': 126.23, '3_2_phi_std': 10.53, '3_2_psi_std': 10.95}, 'Cluster 1': {'count': 9313, '3_2_phi_mean': -75.41, '3_2_psi_mean': 102.36, '3_2_phi_std': 11.75, '3_2_psi_std': 13.15}, 'Cluster 2': {'count': 1296, '3_2_phi_mean': -64.88, '3_2_psi_mean': -41.8... | G15541SE | GS00072 | DGalpb1-4DGlcpa1-OH | DGalpb1-4DGlcp | Gal(b1-4)Glc | β-D-Galp-(1→4)-D-Glc | WURCS=2.0/2,2,1/[u2122h][a2112h-1b_1-5]/1-2/a4-b1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,LIN,1:1o(4+1)2d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H]1CO | null | 342.12 | null | Gal(b1-4) | {'Gal': 1, 'Glc': 1} | {'Hex': 2} | 4 | 8 | 11 | 7.342073 | {'Cluster 0': 57.49, 'Cluster 1': 31.04, 'Cluster 2': 4.32, 'Cluster 3': 3.95, 'Cluster 4': 3.2} | {'Cluster 0': 89.6044, 'Cluster 1': 2.4831, 'Cluster 2': 1.9331, 'Cluster 3': 1.5265, 'Cluster 4': 1.4532, 'Cluster 5': 1.4032, 'Cluster 6': 1.0232, 'Cluster 7': 0.5733} | {'2': 0.6690573694023908, '3': 0.371269038513848, '4': 0.4086644607157718, '5': 0.3088774191717589, '6': 0.24494342212825093, '7': 0.28964696747900864, '8': 0.29042798985217927} | {'0': [4, 6], '1': [], '2': [3, 5], '3': [1, 2, 7], '4': [0]} | {'explained_variance_ratio': [0.14564217830463785, 0.11054378422718703, 0.10480126108572611, 0.05939687774711039, 0.04024175782520692, 0.037696462344659905, 0.03142532589435805, 0.026575215276616448, 0.025010142210801414, 0.022036552590301715], 'cumulative_variance': [0.14564217830463785, 0.2561859625318249, 0.36098722... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpa1-OH | Gal(b1-4)Glc(a1- | β-D-Galp-(1→4)-α-D-Glcp-(1→ | G88362QR | WURCS=2.0/2,2,1/[a2122h-1a_1-5][a2112h-1b_1-5]/1-2/a4-b1 | DGalpb1-4DGlcpb1-OH | Gal(b1-4)Glc(b1- | β-D-Galp-(1→4)-β-D-Glcp-(1→ | G84224TW | WURCS=2.0/2,2,1/[a2122h-1b_1-5][a2112h-1b_1-5]/1-2/a4-b1 | null | null | null | {'GLC2-GAL3': {'2': {'phi': -76.35, 'psi': 131.21, 'strain': 0.282, 'linkage': '1-4'}, '3': {'phi': -73.99, 'psi': 105.45, 'strain': 0.169, 'linkage': '1-4'}, '4': {'phi': -76.2, 'psi': -62.63, 'strain': 2.105, 'linkage': '1-4'}, '5': {'phi': -132.81, 'psi': 100.12, 'strain': 2.97, 'linkage': '1-4'}, '6': {'phi': -78.7... | {'GLC2-GAL3': {'2': {'phi': -76.35, 'psi': 131.21, 'strain': 0.282, 'linkage': '1-4'}, '3': {'phi': -74.03, 'psi': 105.48, 'strain': 0.169, 'linkage': '1-4'}, '4': {'phi': -76.11, 'psi': -62.64, 'strain': 2.105, 'linkage': '1-4'}, '5': {'phi': -132.76, 'psi': 100.09, 'strain': 2.97, 'linkage': '1-4'}, '6': {'phi': -78.... | {'GLC2-GAL3': {'2': {'phi': -76.35, 'psi': 131.21, 'strain': 0.282, 'linkage': '1-4'}, '3': {'phi': -73.99, 'psi': 105.45, 'strain': 0.169, 'linkage': '1-4'}, '4': {'phi': -76.2, 'psi': -62.63, 'strain': 2.105, 'linkage': '1-4'}, '5': {'phi': -132.81, 'psi': 100.12, 'strain': 2.97, 'linkage': '1-4'}, '6': {'phi': -78.7... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G15541SE'}]};{'taxon_id': '210', 'taxon_label': 'Helicobacter pylori', 'evidence': [{'label': 'GlyTouCan(bcsdb)', 'id': 'glytoucan.org/Structures/Glycans/G15541SE'}]};{'tax... | 2 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G15541SE', 'url': 'https://glycosmos.org/glycans/show/G15541SE'}, {'database': 'Subsumption', 'id': 'G74621DY', 'url': 'https://www.glygen.org/glycan/G74621DY'}], 'common_name': 'Human', 'glygen_name': '... | {'type': {'name': 'Human Milk Oligosaccharide'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G15541SE', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G15541... | {'id': '491843155', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491843155', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '14193', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '221', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '7713', 'da... | 454.24 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 984 | Saccharide | Hex(2) % 342.1162117 | freeEnd--?D-Glc--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000064', 'name': 'Lactosylceramide', 'keywords': 'Glycolipid'} | {'related_accession': 'G04473OS', 'relationship': 'ancestor'};{'related_accession': 'G12365LP', 'relationship': 'ancestor'};{'related_accession': 'G24870GJ', 'relationship': 'ancestor'};{'related_accession': 'G45116DB', 'relationship': 'ancestor'};{'related_accession': 'G46263LW', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00073/snfg.svg | ./torsion_data/GS00073_torsion_data.txt | {'Cluster 0': {'count': 13802, '3_2_phi_mean': -80.79, '3_2_psi_mean': 101.42, '4_3_phi_mean': -79.06, '4_3_psi_mean': -135.54, '3_2_phi_std': 10.86, '3_2_psi_std': 12.35, '4_3_phi_std': 10.78, '4_3_psi_std': 15.63}, 'Cluster 1': {'count': 7315, '3_2_phi_mean': -76.84, '3_2_psi_mean': 103.68, '4_3_phi_mean': -77.46, '4... | G93380BT | GS00073 | DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAca1-OH | DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAc | GlcNAc(b1-4)GlcNAc(b1-4)GlcNAc | β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/2,3,2/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-2/a4-b1_b4-c1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dglc-HEX-1:5,6s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5d(2+1)6n, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3NC(C)=O)[C@H](O)[C@H]2NC(C)=O)[C@H]1CO | null | 627.25 | null | GlcNAc(b1-4) | {'GlcNAc': 3} | {'HexNAc': 3} | 10 | 11 | 16 | 9.740901 | {'Cluster 0': 46.0, 'Cluster 1': 24.38, 'Cluster 2': 21.66, 'Cluster 3': 4.84, 'Cluster 4': 3.11} | {'Cluster 0': 72.1928, 'Cluster 1': 11.2855, 'Cluster 2': 9.6157, 'Cluster 3': 2.1431, 'Cluster 4': 1.2032, 'Cluster 5': 1.0666, 'Cluster 6': 0.5433, 'Cluster 7': 0.5199, 'Cluster 8': 0.5166, 'Cluster 9': 0.4266, 'Cluster 10': 0.2966, 'Cluster 11': 0.12, 'Cluster 12': 0.07} | {'2': 0.6576022811937453, '3': 0.2945939306592935, '4': 0.30284428767559735, '5': 0.25973891752385164, '6': 0.2513151366295275, '7': 0.21885210378893508, '8': 0.23187299606130682} | {'0': [6, 10], '1': [3, 8, 9, 12], '2': [5, 11], '3': [1, 2, 4, 7], '4': [0]} | {'explained_variance_ratio': [0.15270272187470232, 0.09246166525696183, 0.07482701619666389, 0.06309607792571377, 0.05251937966202517, 0.03775787299200445, 0.0359458580302025, 0.03260301532765107, 0.028024759237057956, 0.023056546253104708], 'cumulative_variance': [0.15270272187470232, 0.24516438713166416, 0.3199914033... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAca1-OH | GlcNAc(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G52179QP | WURCS=2.0/2,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-2/a4-b1_b4-c1 | DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | GlcNAc(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G47362BJ | WURCS=2.0/1,3,2/[a2122h-1b_1-5_2*NCC/3=O]/1-1-1/a4-b1_b4-c1 | null | null | null | {'NDG2-NAG3': {'2': {'phi': -77.81, 'psi': 106.85, 'strain': 0.169, 'linkage': '1-4'}, '3': {'phi': -85.35, 'psi': 98.33, 'strain': 0.7, 'linkage': '1-4'}, '4': {'phi': -76.61, 'psi': 122.22, 'strain': 0.008, 'linkage': '1-4'}, '5': {'phi': -89.53, 'psi': 156.61, 'strain': 2.739, 'linkage': '1-4'}, '6': {'phi': -76.77,... | {'NDG2-NAG3': {'2': {'phi': -77.81, 'psi': 106.85, 'strain': 0.169, 'linkage': '1-4'}, '3': {'phi': -85.35, 'psi': 98.3, 'strain': 0.7, 'linkage': '1-4'}, '4': {'phi': -76.66, 'psi': 122.23, 'strain': 0.008, 'linkage': '1-4'}, '5': {'phi': -89.59, 'psi': 156.64, 'strain': 2.739, 'linkage': '1-4'}, '6': {'phi': -76.74, ... | {'NDG2-NAG3': {'2': {'phi': -77.81, 'psi': 106.85, 'strain': 0.169, 'linkage': '1-4'}, '3': {'phi': -85.35, 'psi': 98.33, 'strain': 0.7, 'linkage': '1-4'}, '4': {'phi': -76.61, 'psi': 122.22, 'strain': 0.008, 'linkage': '1-4'}, '5': {'phi': -89.53, 'psi': 156.61, 'strain': 2.739, 'linkage': '1-4'}, '6': {'phi': -76.77,... | {'taxon_id': '6692', 'taxon_label': 'Pleocyemata', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G93380BT'}]};{'taxon_id': '4932', 'taxon_label': "Saccharomyces cerevisiae (brewer's yeast)", 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans... | 3 | {'taxid': 9031, 'name': 'Gallus gallus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G47362BJ', 'url': 'https://www.glygen.org/glycan/G47362BJ'}], 'common_name': 'Chicken', 'glygen_name': 'Chicken', 'reference_species': 'Gallus gallus [9031]'};{'taxid': 4932, 'name': 'Saccharom... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491868019', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491868019', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G93380BT', 'url': 'https://glytoucan.org/Structures/Glycans/G93380BT', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G93380BT', 'url': 'https://gnome.gl... | 781.42 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(3) % 627.248682515 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G29637GQ', 'relationship': 'ancestor'};{'related_accession': 'G40740AD', 'relationship': 'ancestor'};{'related_accession': 'G92097KS', 'relationship': 'ancestor'};{'related_accession': 'G40740AD', 'relationship': 'basecomposition'};{'related_accession': 'G29637GQ', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.2.1'} |
./raw_dataGS00074/snfg.svg | ./torsion_data/GS00074_torsion_data.txt | {'Cluster 0': {'count': 9847, '3_2_phi_mean': -74.99, '3_2_psi_mean': -8.37, '4_2_phi_mean': -77.41, '4_2_psi_mean': -140.86, '3_2_phi_std': 25.87, '3_2_psi_std': 164.92, '4_2_phi_std': 12.87, '4_2_psi_std': 67.63}, 'Cluster 1': {'count': 7352, '3_2_phi_mean': -75.44, '3_2_psi_mean': -16.75, '4_2_phi_mean': -73.4, '4_2... | G00038MO | GS00074 | DGlcpNAcb1-3[DGlcpNAcb1-6]DGalpNAca1-OH | DGlcpNAcb1-3[DGlcpNAcb1-6]DGalpNAc | GlcNAc(b1-3)[GlcNAc(b1-6)]GalNAc | β-D-GlcpNAc-(1→3)[β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/2,3,2/[u2112h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-2/a3-b1_a6-c1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dglc-HEX-1:5,6s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3d(2+1)4n,4:1o(6+1)5d,5:5d(2+1)6n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O | null | 627.25 | {'motif': 'G00038MO', 'motif_label': 'O-Glycan core 4 fuzzy'} | GlcNAc(b1-3);GlcNAc(b1-6) | {'GlcNAc': 2, 'GalNAc': 1} | {'HexNAc': 3} | 10 | 11 | 16 | 10.625471 | {'Cluster 0': 32.82, 'Cluster 1': 24.5, 'Cluster 2': 17.14, 'Cluster 3': 13.88, 'Cluster 4': 11.66} | {'Cluster 0': 23.9943, 'Cluster 1': 21.1246, 'Cluster 2': 10.6689, 'Cluster 3': 9.709, 'Cluster 4': 7.8892, 'Cluster 5': 4.8395, 'Cluster 6': 4.5995, 'Cluster 7': 3.7263, 'Cluster 8': 3.5863, 'Cluster 9': 2.7297, 'Cluster 10': 2.5064, 'Cluster 11': 1.8798, 'Cluster 12': 1.0766, 'Cluster 13': 0.9266, 'Cluster 14': 0.686... | {'2': 0.26392572010790627, '3': 0.2902928580127684, '4': 0.3171222316234452, '5': 0.3252220560107476, '6': 0.31517153403923276, '7': 0.3283218577482369, '8': 0.31415195956267794} | {'0': [0, 3, 8], '1': [2, 4, 10, 11], '2': [9, 14], '3': [5, 13], '4': [1, 6, 7, 12, 15]} | {'explained_variance_ratio': [0.18157290878190013, 0.12138798697631696, 0.08750411821250584, 0.05752914751644912, 0.05278120686907557, 0.03138855349848549, 0.029617046094180723, 0.02509420702519029, 0.020964960791515892, 0.0177719102617918], 'cumulative_variance': [0.18157290878190013, 0.3029608957582171, 0.39046501397... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGlcpNAcb1-3[DGlcpNAcb1-6]DGalpNAca1-OH | GlcNAc(b1-3)[GlcNAc(b1-6)]GalNAc(a1- | β-D-GlcpNAc-(1→3)[β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G00037MO | WURCS=2.0/2,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-2/a3-b1_a6-c1 | DGlcpNAcb1-3[DGlcpNAcb1-6]DGalpNAcb1-OH | GlcNAc(b1-3)[GlcNAc(b1-6)]GalNAc(b1- | β-D-GlcpNAc-(1→3)[β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G60275BG | WURCS=2.0/2,3,2/[a2112h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-2/a3-b1_a6-c1 | null | null | null | {'A2G2-NAG4': {'2': {'phi': -81.53, 'psi': -151.5, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -65.29, 'psi': -98.63, 'strain': 0.094, 'linkage': '1-3'}, '4': {'phi': -72.3, 'psi': -119.46, 'strain': 0.704, 'linkage': '1-3'}, '5': {'phi': -79.03, 'psi': -162.21, 'strain': 1.129, 'linkage': '1-3'}, '6': {'phi': -67... | {'A2G2-NAG4': {'2': {'phi': -81.53, 'psi': -151.5, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -65.28, 'psi': -98.61, 'strain': 0.094, 'linkage': '1-3'}, '4': {'phi': -72.28, 'psi': -119.52, 'strain': 0.704, 'linkage': '1-3'}, '5': {'phi': -79.02, 'psi': -162.2, 'strain': 1.129, 'linkage': '1-3'}, '6': {'phi': -66... | {'A2G2-NAG4': {'2': {'phi': -81.53, 'psi': -151.5, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -65.29, 'psi': -98.63, 'strain': 0.094, 'linkage': '1-3'}, '4': {'phi': -72.3, 'psi': -119.46, 'strain': 0.704, 'linkage': '1-3'}, '5': {'phi': -79.03, 'psi': -162.21, 'strain': 1.129, 'linkage': '1-3'}, '6': {'phi': -67... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G00038MO'}]} | 3 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G00037MO', 'url': 'https://www.glygen.org/glycan/G00037MO'}, {'database': 'Subsumption', 'id': 'G18892PE', 'url': 'https://www.glygen.org/glycan/G18892PE'}], 'common_name': 'Bovine', 'glygen_name'... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 4'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G00038MO', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491870182', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491870182', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '12818', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '29073', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+29073', 'database': 'C... | 781.42 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(3) % 627.248682515 | freeEnd--?D-GalNAc(--3b1D-GlcNAc,p)--6b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G20174EZ', 'relationship': 'ancestor'};{'related_accession': 'G28134WJ', 'relationship': 'ancestor'};{'related_accession': 'G40740AD', 'relationship': 'ancestor'};{'related_accession': 'G60735SE', 'relationship': 'ancestor'};{'related_accession': 'G65137ZN', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00075/snfg.svg | ./torsion_data/GS00075_torsion_data.txt | {'Cluster 0': {'count': 24942, '3_2_phi_mean': -75.91, '3_2_psi_mean': 115.63, '8_3_phi_mean': -63.19, '8_3_psi_mean': 122.73, '4_3_phi_mean': -79.14, '4_3_psi_mean': 78.82, '7_4_phi_mean': -68.72, '7_4_psi_mean': -97.86, '5_4_phi_mean': -67.29, '5_4_psi_mean': 132.88, '6_5_phi_mean': -68.85, '6_5_psi_mean': 137.05, '9... | G61752HI | GS00075 | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcpa1-OH | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcp | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)]Gal(b1-4)Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/5,9,8/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4-4-3-2-5/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d2-e1_g4-h1_h6-i2 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-lgal-HEX-1:5|6:d,7b:a-lgal-HEX-1:5|6:d,8b:b-dglc-HEX-1:5,9s:n-acetyl,10b:b-dgal-HEX-1:5,11b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,12s:n-acetyl,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:5o(2+1)6d,6:3o(4+1)7d,7:2o(6+1)8d... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO[C@]5(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O5)[C@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](... | null | 1,655.59 | {'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00294TN', 'motif_label': 'Blood group H (type 1)'};{'motif': 'G39211DH', 'motif_label': 'Leb'};{'motif': 'G39211DH', 'motif_label': 'Lewis b'} | Fuc(a1-2);Neu5Ac(a2-6);Fuc(a1-4) | {'Gal': 3, 'Fuc': 2, 'GlcNAc': 2, 'Neu5Ac': 1, 'Glc': 1} | {'Hex': 4, 'HexNAc': 2, 'Neu5Ac': 1, 'dHex': 2} | 29 | 29 | 47 | 12.3289 | {'Cluster 0': 31.17, 'Cluster 1': 23.41, 'Cluster 2': 19.63, 'Cluster 3': 14.67, 'Cluster 4': 11.12} | {'Cluster 0': 22.5577, 'Cluster 1': 16.6533, 'Cluster 2': 14.926, 'Cluster 3': 12.8662, 'Cluster 4': 6.1931, 'Cluster 5': 6.1019, 'Cluster 6': 3.6184, 'Cluster 7': 3.2172, 'Cluster 8': 3.0534, 'Cluster 9': 2.8797, 'Cluster 10': 2.3648, 'Cluster 11': 1.5636, 'Cluster 12': 1.0836, 'Cluster 13': 0.8987, 'Cluster 14': 0.52... | {'2': 0.38851706915822476, '3': 0.3543843580503027, '4': 0.4125065767558778, '5': 0.4157914490895557, '6': 0.384386006066834, '7': 0.4029795197580232, '8': 0.3945454789330975} | {'0': [11, 17], '1': [9, 15], '2': [1, 7, 10, 16, 20, 21], '3': [2, 6, 12], '4': [0, 3, 4, 5, 8, 13, 14, 18, 19]} | {'explained_variance_ratio': [0.3112976736080446, 0.07458908625857125, 0.049109894312703885, 0.03583249127307525, 0.0340970032686387, 0.027492962189214865, 0.022089446067222202, 0.020535455223139938, 0.01924060181527438, 0.01811162243577552], 'cumulative_variance': [0.3112976736080446, 0.38588675986661586, 0.4349966541... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)]Gal(b1-4)Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G53720CB | WURCS=2.0/5,9,8/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4-4-3-2-5/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d2-e1_g4-h1_h6-i2 | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-6)]Gal(b1-4)Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G17931AG | WURCS=2.0/5,9,8/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4-4-3-2-5/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d2-e1_g4-h1_h6-i2 | null | null | null | {'GAL5-FUC6': {'2': {'phi': -64.72, 'psi': 142.12, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -72.5, 'psi': 134.05, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -62.29, 'psi': 137.22, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -70.51, 'psi': 140.65, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -66.9... | {'GAL5-FUC6': {'2': {'phi': -64.72, 'psi': 142.12, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -72.52, 'psi': 134.05, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -62.3, 'psi': 137.23, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -70.53, 'psi': 140.65, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -66.9... | {'GAL5-FUC6': {'2': {'phi': -64.72, 'psi': 142.12, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -72.5, 'psi': 134.05, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -62.29, 'psi': 137.22, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -70.51, 'psi': 140.65, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -66.9... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G61752HI'}]} | 9 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G61752HI', 'url': 'https://glycosmos.org/glycans/show/G61752HI'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G61752HI', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G61752... | {'id': '491857849', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491857849', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '2839', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '23955', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+23955', 'database': 'Ca... | 2,062.05 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 218 | Saccharide | HexNAc(2)Hex(4)dHex(2)NeuAc(1) % 1655.59183828 | freeEnd--?D-Glc--4b1D-Gal,p(--3b1D-GlcNAc,p(--3b1D-Gal,p--2a1L-Fuc,p)--4a1L-Fuc,p)--6b1D-GlcNAc,p--4b1D-Gal,p--6a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000020', 'name': 'Lewis a', 'synonym': 'Le^a; Le... | {'related_accession': 'G06046KU', 'relationship': 'ancestor'};{'related_accession': 'G46433HY', 'relationship': 'ancestor'};{'related_accession': 'G70699AI', 'relationship': 'ancestor'};{'related_accession': 'G87321EI', 'relationship': 'ancestor'};{'related_accession': 'G98993TR', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00076/snfg.svg | ./torsion_data/GS00076_torsion_data.txt | {'Cluster 0': {'count': 8359, '3_2_phi_mean': -64.97, '3_2_psi_mean': -115.17, '4_3_phi_mean': -69.17, '4_3_psi_mean': 135.98, '3_2_phi_std': 7.36, '3_2_psi_std': 13.02, '4_3_phi_std': 7.68, '4_3_psi_std': 8.51}, 'Cluster 1': {'count': 6438, '3_2_phi_mean': -75.33, '3_2_psi_mean': -112.75, '4_3_phi_mean': -69.05, '4_3_... | G45003JO | GS00076 | LFucpa1-2DGalpb1-4DGlcpNAcb1-OH | LFucpa1-2DGalpb1-4DGlcpNAc | Fuc(a1-2)Gal(b1-4)GlcNAc | α-L-Fucp-(1→2)-β-D-Galp-(1→4)-D-GlcNAc | WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3/a4-b1_b2-c1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3o(2+1)4d, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H]1CO | null | 529.2 | null | Fuc(a1-2) | {'Fuc': 1, 'Gal': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'dHex': 1} | 7 | 10 | 15 | 10.331699 | {'Cluster 0': 27.86, 'Cluster 1': 21.46, 'Cluster 2': 19.78, 'Cluster 3': 19.29, 'Cluster 4': 11.62} | {'Cluster 0': 53.1047, 'Cluster 1': 20.4913, 'Cluster 2': 9.6424, 'Cluster 3': 6.0761, 'Cluster 4': 3.1797, 'Cluster 5': 2.863, 'Cluster 6': 2.1998, 'Cluster 7': 1.1632, 'Cluster 8': 0.5366, 'Cluster 9': 0.26, 'Cluster 10': 0.1733, 'Cluster 11': 0.1467, 'Cluster 12': 0.1067, 'Cluster 13': 0.0333, 'Cluster 14': 0.0233} | {'2': 0.3437666994040761, '3': 0.2666715868287511, '4': 0.24451101750361107, '5': 0.2194785852667779, '6': 0.21104326886712013, '7': 0.22743455509802246, '8': 0.22767802753388997} | {'0': [14], '1': [0, 7, 12], '2': [2, 4, 6, 8, 11], '3': [1, 3, 5, 10], '4': [9, 13]} | {'explained_variance_ratio': [0.1515205908645444, 0.09310968095537454, 0.0771855431683388, 0.05215068712570365, 0.048457561556273634, 0.0359082398791371, 0.03289908941860897, 0.028277761960383396, 0.024208685534738386, 0.020980011987884396], 'cumulative_variance': [0.1515205908645444, 0.24463027181991892, 0.32181581498... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-4DGlcpNAca1-OH | Fuc(a1-2)Gal(b1-4)GlcNAc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)-α-D-GlcpNAc-(1→ | G42956UG | WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3/a4-b1_b2-c1 | LFucpa1-2DGalpb1-4DGlcpNAcb1-OH | Fuc(a1-2)Gal(b1-4)GlcNAc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→ | G61459JW | WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3/a4-b1_b2-c1 | null | null | null | {'GAL3-FUC4': {'2': {'phi': -72.94, 'psi': 145.58, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -65.24, 'psi': 148.09, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -66.06, 'psi': 146.01, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -74.89, 'psi': 141.35, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -96.... | {'GAL3-FUC4': {'2': {'phi': -72.94, 'psi': 145.58, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -65.21, 'psi': 148.11, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -66.1, 'psi': 146.0, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -74.88, 'psi': 141.33, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -96.04... | {'GAL3-FUC4': {'2': {'phi': -72.94, 'psi': 145.58, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -65.24, 'psi': 148.09, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -66.06, 'psi': 146.01, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -74.89, 'psi': 141.35, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -96.... | {'taxon_id': '8292', 'taxon_label': 'Amphibia (amphibians)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G45003JO'}]};{'taxon_id': '210', 'taxon_label': 'Helicobacter pylori', 'evidence': [{'label': 'GlyTouCan(bcsdb)', 'id': 'glytoucan.org/Structures/Glycans/G45003JO'}]} | 3 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G39064VB', 'url': 'https://www.glygen.org/glycan/G39064VB'}, {'database': 'Subsumption', 'id': 'G42956UG', 'url': 'https://www.glygen.org/glycan/G42956UG'}, {'database': 'Subsumption', 'id': 'G6... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491896344', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491896344', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '507', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10639', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+10639', 'database': 'Car... | 669.36 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(1)Hex(1)dHex(1) % 529.200669675 | freeEnd--?D-GlcNAc--4b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000036', 'name': 'Blood group H (type 2)', 'keywords': 'Blood group H; Blood group type 2'} | {'related_accession': 'G02497EU', 'relationship': 'ancestor'};{'related_accession': 'G29711LC', 'relationship': 'ancestor'};{'related_accession': 'G34611YE', 'relationship': 'ancestor'};{'related_accession': 'G54129SE', 'relationship': 'ancestor'};{'related_accession': 'G69249NT', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00077/snfg.svg | ./torsion_data/GS00077_torsion_data.txt | {'Cluster 0': {'count': 14423, '3_2_phi_mean': -80.02, '3_2_psi_mean': 102.87, '4_3_phi_mean': -69.38, '4_3_psi_mean': -107.23, '6_3_phi_mean': -69.22, '6_3_psi_mean': 141.29, '3_2_phi_std': 15.49, '3_2_psi_std': 31.7, '4_3_phi_std': 8.51, '4_3_psi_std': 7.18, '6_3_phi_std': 8.96, '6_3_psi_std': 8.44}, 'Cluster 1': {'c... | G97054BM | GS00077 | LFucpa1-3[DNeup5Aca2-3DGalpb1-4]DGlcpNAcb1-3DGalpb1-OH | LFucpa1-3[DNeup5Aca2-3DGalpb1-4]DGlcpNAcb1-3DGalp | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-D-Gal | WURCS=2.0/5,5,4/[u2112h][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-5/a3-b1_b3-c1_b4-d1_d3-e2 | RES,1b:b-dgal-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:a-lgal-HEX-1:5|6:d,5b:b-dgal-HEX-1:5,6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,7s:n-acetyl,LIN,1:1o(3+1)2d,2:2d(2+1)3n,3:2o(3+1)4d,4:2o(4+1)5d,5:5o(3+2)6d,6:6d(5+1)7n, | O1C(O)[C@H](O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)[C@H]3O)[C@H](O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO | null | 982.35 | {'motif': 'G00054MO', 'motif_label': 'Slex'};{'motif': 'G00054MO', 'motif_label': 'Sialyl Lewis x'} | Fuc(a1-3);Neu5Ac(a2-3) | {'Gal': 2, 'Neu5Ac': 1, 'Fuc': 1, 'GlcNAc': 1} | {'Hex': 2, 'HexNAc': 1, 'Neu5Ac': 1, 'dHex': 1} | 17 | 18 | 28 | 10.259151 | {'Cluster 0': 36.05, 'Cluster 1': 31.32, 'Cluster 2': 23.42, 'Cluster 3': 5.95, 'Cluster 4': 3.25} | {'Cluster 0': 53.1847, 'Cluster 1': 18.6631, 'Cluster 2': 10.1915, 'Cluster 3': 9.684, 'Cluster 4': 2.3023, 'Cluster 5': 2.0723, 'Cluster 6': 1.5423, 'Cluster 7': 1.1024, 'Cluster 8': 0.7174, 'Cluster 9': 0.19, 'Cluster 10': 0.1075, 'Cluster 11': 0.1, 'Cluster 12': 0.0775, 'Cluster 13': 0.0425, 'Cluster 14': 0.0225} | {'2': 0.6751417097366791, '3': 0.4400991915370958, '4': 0.49918805960673585, '5': 0.4963370318064683, '6': 0.40811168455803726, '7': 0.3923348991411412, '8': 0.3794728133887145} | {'0': [0], '1': [5], '2': [6, 12, 14], '3': [1, 2, 3, 7, 8, 9, 10, 13], '4': [4, 11]} | {'explained_variance_ratio': [0.19883032889520744, 0.1315007591196305, 0.08460118652502317, 0.06503606513525788, 0.04018719880016883, 0.02383017279781255, 0.02243227278726646, 0.021135540145824465, 0.02002315657106235, 0.016890857241873943], 'cumulative_variance': [0.19883032889520744, 0.3303310880148379, 0.41493227453... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DNeup5Aca2-3DGalpb1-4]DGlcpNAcb1-3DGalpa1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-α-D-Galp-(1→ | G69377IA | WURCS=2.0/5,5,4/[a2112h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-5/a3-b1_b3-c1_b4-d1_d3-e2 | LFucpa1-3[DNeup5Aca2-3DGalpb1-4]DGlcpNAcb1-3DGalpb1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→ | G32081WS | WURCS=2.0/4,5,4/[a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-1-4/a3-b1_b3-c1_b4-d1_d3-e2 | null | null | null | {'GAL2-NAG3': {'2': {'phi': -86.17, 'psi': -159.63, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -91.36, 'psi': -162.96, 'strain': 1.302, 'linkage': '1-3'}, '4': {'phi': -93.51, 'psi': -164.15, 'strain': 1.302, 'linkage': '1-3'}, '5': {'phi': -61.35, 'psi': -89.41, 'strain': 0.792, 'linkage': '1-3'}, '6': {'phi': -... | {'GAL2-NAG3': {'2': {'phi': -86.17, 'psi': -159.63, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -91.4, 'psi': -162.99, 'strain': 1.302, 'linkage': '1-3'}, '4': {'phi': -93.51, 'psi': -164.13, 'strain': 1.302, 'linkage': '1-3'}, '5': {'phi': -61.33, 'psi': -89.4, 'strain': 0.792, 'linkage': '1-3'}, '6': {'phi': -82... | {'GAL2-NAG3': {'2': {'phi': -86.17, 'psi': -159.63, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -91.36, 'psi': -162.96, 'strain': 1.302, 'linkage': '1-3'}, '4': {'phi': -93.51, 'psi': -164.15, 'strain': 1.302, 'linkage': '1-3'}, '5': {'phi': -61.35, 'psi': -89.41, 'strain': 0.792, 'linkage': '1-3'}, '6': {'phi': -... | null | 5 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G32081WS', 'url': 'https://www.glygen.org/glycan/G32081WS'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491869184', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491869184', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '11892', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '38318', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+38318', 'database': 'C... | 1,234.63 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 393 | Saccharide | HexNAc(1)Hex(2)dHex(1)NeuAc(1) % 982.34890981 | freeEnd--?D-Gal--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000022', 'name': 'Sialyl Lewis x', 'synonym': 'SLe^x; SLex; Slex',... | {'related_accession': 'G01879YS', 'relationship': 'ancestor'};{'related_accession': 'G25807NR', 'relationship': 'ancestor'};{'related_accession': 'G71085SF', 'relationship': 'ancestor'};{'related_accession': 'G85983AE', 'relationship': 'ancestor'};{'related_accession': 'G87552OY', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00078/snfg.svg | ./torsion_data/GS00078_torsion_data.txt | {'Cluster 0': {'count': 8150, '6_2_phi_mean': -75.11, '6_2_psi_mean': -83.71, '3_2_phi_mean': -68.72, '3_2_psi_mean': -103.42, '5_3_phi_mean': 70.04, '5_3_psi_mean': 64.94, '4_3_phi_mean': -69.2, '4_3_psi_mean': 139.23, '6_2_phi_std': 20.11, '6_2_psi_std': 56.08, '3_2_phi_std': 8.0, '3_2_psi_std': 12.36, '5_3_phi_std':... | G66421OE | GS00078 | LFucpa1-2[DGalpa1-3]DGalpb1-3[DGlcpNAcb1-6]DGalpNAca1-OH | LFucpa1-2[DGalpa1-3]DGalpb1-3[DGlcpNAcb1-6]DGalpNAc | Fuc(a1-2)[Gal(a1-3)]Gal(b1-3)[GlcNAc(b1-6)]GalNAc | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)[β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/5,5,4/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-5/a3-b1_a6-e1_b2-c1_b3-d1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-lgal-HEX-1:5|6:d,5b:a-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(2+1)4d,4:3o(3+1)5d,5:1o(6+1)6d,6:6d(2+1)7n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H]2O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O | null | 894.33 | {'motif': 'G24432YB', 'motif_label': 'a-Gal antigen'};{'motif': 'G00034MO', 'motif_label': 'O-Glycan core 2 fuzzy'} | GlcNAc(b1-6);Fuc(a1-2);Gal(a1-3) | {'Gal': 2, 'Fuc': 1, 'GlcNAc': 1, 'GalNAc': 1} | {'Hex': 2, 'HexNAc': 2, 'dHex': 1} | 1 | 5 | 6 | 11.507786 | {'Cluster 0': 27.16, 'Cluster 1': 25.92, 'Cluster 2': 18.23, 'Cluster 3': 17.22, 'Cluster 4': 11.46} | {'Cluster 0': 28.1838, 'Cluster 1': 26.6607, 'Cluster 2': 10.6289, 'Cluster 3': 7.1393, 'Cluster 4': 6.9993, 'Cluster 5': 6.3094, 'Cluster 6': 4.9995, 'Cluster 7': 2.5497, 'Cluster 8': 1.7665, 'Cluster 9': 1.4265, 'Cluster 10': 0.7466, 'Cluster 11': 0.6166, 'Cluster 12': 0.5333, 'Cluster 13': 0.46, 'Cluster 14': 0.3666... | {'2': 0.3549952676801325, '3': 0.2840025731251256, '4': 0.2883113350724306, '5': 0.2822806843916715, '6': 0.2658074381255104, '7': 0.27517863822892846, '8': 0.18841657225661076} | {'0': [0, 11], '1': [12], '2': [2, 4, 13, 14], '3': [1, 3, 6, 8, 9, 15, 16, 17, 18], '4': [5, 7, 10]} | {'explained_variance_ratio': [0.1498521527257974, 0.11245232875279407, 0.07558282012233711, 0.0728533210453188, 0.04591131523787669, 0.0353581381825552, 0.03232442278616518, 0.030153028419593764, 0.024807198791947996, 0.021834846485913124], 'cumulative_variance': [0.1498521527257974, 0.2623044814785915, 0.3378873016009... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2[DGalpa1-3]DGalpb1-3[DGlcpNAcb1-6]DGalpNAca1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1-3)[GlcNAc(b1-6)]GalNAc(a1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)[β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G93828IC | WURCS=2.0/5,5,4/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-5/a3-b1_a6-e1_b2-c1_b3-d1 | LFucpa1-2[DGalpa1-3]DGalpb1-3[DGlcpNAcb1-6]DGalpNAcb1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1-3)[GlcNAc(b1-6)]GalNAc(b1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)[β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G78482II | WURCS=2.0/5,5,4/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-5/a3-b1_a6-e1_b2-c1_b3-d1 | null | null | null | {'GAL3-FUC4': {'2': {'phi': -66.41, 'psi': 136.4, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -67.43, 'psi': 139.72, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -71.94, 'psi': 139.64, 'strain': 0.426, 'linkage': '1-2'}, '5': {'phi': -67.14, 'psi': 135.83, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -54.6... | {'GAL3-FUC4': {'2': {'phi': -66.41, 'psi': 136.4, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -67.46, 'psi': 139.73, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -71.98, 'psi': 139.65, 'strain': 0.426, 'linkage': '1-2'}, '5': {'phi': -67.19, 'psi': 135.85, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -54.7... | {'GAL3-FUC4': {'2': {'phi': -66.41, 'psi': 136.4, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -67.43, 'psi': 139.72, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -71.94, 'psi': 139.64, 'strain': 0.426, 'linkage': '1-2'}, '5': {'phi': -67.14, 'psi': 135.83, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -54.6... | null | 5 | null | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 2'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G66421OE', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491958048', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491958048', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G66421OE', 'url': 'https://glytoucan.org/Structures/Glycans/G66421OE', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G66421OE', 'url': 'https://sandbox.... | 1,118.58 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 393 | Saccharide | HexNAc(2)Hex(2)dHex(1) % 894.33286578 | freeEnd--?D-GalNAc(--3b1D-Gal,p(--2a1L-Fuc,p)--3a1D-Gal,p)--6b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000015', 'name': 'a-Gal antigen', 'synonym': 'alpha-Gal antigen'} | {'related_accession': 'G71784JC', 'relationship': 'ancestor'};{'related_accession': 'G93579XB', 'relationship': 'ancestor'};{'related_accession': 'G97811LK', 'relationship': 'ancestor'};{'related_accession': 'G99932KY', 'relationship': 'ancestor'};{'related_accession': 'G93579XB', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00080/snfg.svg | ./torsion_data/GS00080_torsion_data.txt | {'Cluster 0': {'count': 33382, '3_2_phi_mean': -78.18, '3_2_psi_mean': 62.71, '4_2_phi_mean': -79.23, '4_2_psi_mean': -130.13, '5_4_phi_mean': -81.34, '5_4_psi_mean': -125.06, '6_5_phi_mean': 79.33, '6_5_psi_mean': 91.89, '10_5_phi_mean': 72.17, '10_5_psi_mean': 129.83, '7_6_phi_mean': -85.79, '7_6_psi_mean': -77.18, '... | G99229VQ | GS00080 | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-6-7/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-glycolyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,17s:n-gly... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(=O)CO)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)... | null | 2,400.83 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Fuc(a1-6);Neu5Gc(a2-6) | {'GlcNAc': 4, 'Man': 3, 'Neu5Gc': 2, 'Gal': 2, 'Fuc': 1} | {'Hex': 5, 'HexNAc': 4, 'Neu5Gc': 2, 'dHex': 1} | 47 | 43 | 68 | 14.266738 | {'Cluster 0': 41.72, 'Cluster 1': 20.15, 'Cluster 2': 17.14, 'Cluster 3': 11.24, 'Cluster 4': 9.74} | {'Cluster 0': 30.8582, 'Cluster 1': 8.1104, 'Cluster 2': 6.9956, 'Cluster 3': 6.6956, 'Cluster 4': 5.1795, 'Cluster 5': 4.4496, 'Cluster 6': 4.0883, 'Cluster 7': 3.5571, 'Cluster 8': 3.4484, 'Cluster 9': 3.3084, 'Cluster 10': 3.3059, 'Cluster 11': 3.2259, 'Cluster 12': 3.0109, 'Cluster 13': 2.8772, 'Cluster 14': 2.361,... | {'2': 0.3269563825185156, '3': 0.32243032606363725, '4': 0.3264929822421741, '5': 0.4371191895104173, '6': 0.39409475206333255, '7': 0.3895292709171164, '8': 0.27795505116171926} | {'0': [5, 14, 18, 22, 28], '1': [7, 15, 17, 23], '2': [0, 12, 21, 29], '3': [2, 6, 10, 16, 24, 25, 31], '4': [1, 3, 4, 8, 9, 11, 13, 19, 20, 26, 27, 30, 32]} | {'explained_variance_ratio': [0.1912227904404666, 0.1157595776459396, 0.09159630861273581, 0.05126332533419058, 0.04583522186500738, 0.035411452004399206, 0.03374781901092241, 0.023692821326519287, 0.019529949129649622, 0.01709847380880934], 'cumulative_variance': [0.1912227904404666, 0.3069823680864062, 0.398578676699... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G52649ZM | WURCS=2.0/7,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-6-7/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G63166WT | WURCS=2.0/6,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4-5-6/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | null | null | Biantennary N-Glycan;Complex N-Glycan;Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG7': {'2': {'phi': -95.24, 'psi': -97.26, 'strain': 1.473, 'linkage': '1-2'}, '3': {'phi': -72.93, 'psi': -72.8, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -86.07, 'psi': -77.41, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -76.59, 'psi': -73.75, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -105.1... | {'MAN6-NAG7': {'2': {'phi': -95.24, 'psi': -97.26, 'strain': 1.473, 'linkage': '1-2'}, '3': {'phi': -72.97, 'psi': -72.77, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -86.06, 'psi': -77.39, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -76.63, 'psi': -73.7, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -105.0... | {'MAN6-NAG7': {'2': {'phi': -95.24, 'psi': -97.26, 'strain': 1.473, 'linkage': '1-2'}, '3': {'phi': -72.93, 'psi': -72.8, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -86.07, 'psi': -77.41, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -76.59, 'psi': -73.75, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -105.1... | {'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G99229VQ'}]} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00081/snfg.svg | ./torsion_data/GS00081_torsion_data.txt | {'Cluster 0': {'count': 25116, '3_2_phi_mean': -76.82, '3_2_psi_mean': 63.79, '4_2_phi_mean': -79.77, '4_2_psi_mean': -127.81, '5_4_phi_mean': -85.08, '5_4_psi_mean': -127.21, '6_5_phi_mean': 82.25, '6_5_psi_mean': 92.25, '10_5_phi_mean': 72.91, '10_5_psi_mean': 136.63, '7_6_phi_mean': -84.1, '7_6_psi_mean': -75.06, '8... | G35594BH | GS00081 | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/8,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-7-8/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-glycolyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,17s:n-ace... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[... | null | 2,384.84 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Neu5Ac(a2-6);Fuc(a1-6);Neu5Gc(a2-6) | {'GlcNAc': 4, 'Man': 3, 'Gal': 2, 'Neu5Gc': 1, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 5, 'HexNAc': 4, 'Neu5Ac': 1, 'Neu5Gc': 1, 'dHex': 1} | 46 | 42 | 67 | 14.263018 | {'Cluster 0': 31.39, 'Cluster 1': 24.28, 'Cluster 2': 16.84, 'Cluster 3': 16.73, 'Cluster 4': 10.75} | {'Cluster 0': 16.5121, 'Cluster 1': 14.956, 'Cluster 2': 11.8626, 'Cluster 3': 7.543, 'Cluster 4': 5.457, 'Cluster 5': 4.4296, 'Cluster 6': 4.0096, 'Cluster 7': 3.3997, 'Cluster 8': 3.2884, 'Cluster 9': 3.1659, 'Cluster 10': 2.9772, 'Cluster 11': 2.7897, 'Cluster 12': 2.7397, 'Cluster 13': 2.2248, 'Cluster 14': 2.1923,... | {'2': 0.35919667779009523, '3': 0.37384560399505173, '4': 0.3258701230012878, '5': 0.19156976506181642, '6': 0.22164319460311338, '7': 0.22853922280101915, '8': 0.21504743412710853} | {'0': [1, 3, 9, 11, 16, 17, 24], '1': [2, 5, 12, 14, 22, 29, 31], '2': [6, 13, 19, 20, 30], '3': [0, 4, 7, 8, 10, 15, 18, 21, 25, 28], '4': [23, 26, 27, 32]} | {'explained_variance_ratio': [0.15894887450106862, 0.11413825172532623, 0.09891096401668915, 0.05603668706537552, 0.05319338546836511, 0.036553509575096614, 0.03138507612370037, 0.029227094685944234, 0.02176681110776927, 0.019461473710346136], 'cumulative_variance': [0.15894887450106862, 0.27308712622639486, 0.37199809... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G82621OQ | WURCS=2.0/8,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-7-8/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G52336LJ | WURCS=2.0/7,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4-6-7/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | null | null | Biantennary N-Glycan;Complex N-Glycan;Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG7': {'2': {'phi': -69.17, 'psi': -88.92, 'strain': 0.758, 'linkage': '1-2'}, '3': {'phi': -93.45, 'psi': -85.6, 'strain': 0.71, 'linkage': '1-2'}, '4': {'phi': -75.08, 'psi': -76.39, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -83.09, 'psi': -74.85, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -77.85,... | {'MAN6-NAG7': {'2': {'phi': -69.17, 'psi': -88.92, 'strain': 0.758, 'linkage': '1-2'}, '3': {'phi': -93.47, 'psi': -85.63, 'strain': 0.71, 'linkage': '1-2'}, '4': {'phi': -75.08, 'psi': -76.39, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -83.11, 'psi': -74.78, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -77.78... | {'MAN6-NAG7': {'2': {'phi': -69.17, 'psi': -88.92, 'strain': 0.758, 'linkage': '1-2'}, '3': {'phi': -93.45, 'psi': -85.6, 'strain': 0.71, 'linkage': '1-2'}, '4': {'phi': -75.08, 'psi': -76.39, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -83.09, 'psi': -74.85, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -77.85,... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00082/snfg.svg | ./torsion_data/GS00082_torsion_data.txt | {'Cluster 0': {'count': 10349, '3_2_phi_mean': -84.81, '3_2_psi_mean': -138.25, '4_3_phi_mean': -68.76, '4_3_psi_mean': -117.23, '5_4_phi_mean': -72.49, '5_4_psi_mean': 140.82, '3_2_phi_std': 18.44, '3_2_psi_std': 59.75, '4_3_phi_std': 8.64, '4_3_psi_std': 12.31, '5_4_phi_std': 12.29, '5_4_psi_std': 21.48}, 'Cluster 1'... | G56708PR | GS00082 | LFucpa1-2DGalpb1-4DGlcpNAcb1-3DGalpa1-OH | LFucpa1-2DGalpb1-4DGlcpNAcb1-3DGalp | Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)Gal | α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-D-Gal | WURCS=2.0/4,4,3/[u2112h][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4/a3-b1_b4-c1_c2-d1 | RES,1b:b-dgal-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:b-dgal-HEX-1:5,5b:a-lgal-HEX-1:5|6:d,LIN,1:1o(3+1)2d,2:2d(2+1)3n,3:2o(4+1)4d,4:4o(2+1)5d, | O1C(O)[C@H](O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO | null | 691.25 | {'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Fuc(a1-2) | {'Gal': 2, 'Fuc': 1, 'GlcNAc': 1} | {'Hex': 2, 'HexNAc': 1, 'dHex': 1} | 10 | 13 | 20 | 10.471099 | {'Cluster 0': 34.49, 'Cluster 1': 30.03, 'Cluster 2': 25.3, 'Cluster 3': 7.16, 'Cluster 4': 3.01} | {'Cluster 0': 65.7734, 'Cluster 1': 14.1419, 'Cluster 2': 6.7527, 'Cluster 3': 4.6129, 'Cluster 4': 3.0664, 'Cluster 5': 1.8098, 'Cluster 6': 1.2665, 'Cluster 7': 0.7766, 'Cluster 8': 0.5333, 'Cluster 9': 0.39, 'Cluster 10': 0.3333, 'Cluster 11': 0.26, 'Cluster 12': 0.1733, 'Cluster 13': 0.0933, 'Cluster 14': 0.0167} | {'2': 0.41365733860785037, '3': 0.35389884824698153, '4': 0.37438355865822504, '5': 0.3064365681897034, '6': 0.2843227613319262, '7': 0.261739547997749, '8': 0.24576108945750094} | {'0': [7, 11], '1': [12, 13], '2': [0], '3': [1, 2, 3, 4, 5, 6, 8, 9], '4': [10, 14]} | {'explained_variance_ratio': [0.1255728500522047, 0.11525064023219632, 0.08817152132092984, 0.05518212171835193, 0.053618606954154255, 0.050333733778577396, 0.03808803627880595, 0.02808661500562613, 0.022003012855778704, 0.019457815193692475], 'cumulative_variance': [0.1255728500522047, 0.24082349028440103, 0.328995011... | 1.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-2DGalpb1-4DGlcpNAcb1-3DGalpa1-OH | Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)Gal(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-α-D-Galp-(1→ | G22603VZ | WURCS=2.0/4,4,3/[a2112h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4/a3-b1_b4-c1_c2-d1 | LFucpa1-2DGalpb1-4DGlcpNAcb1-3DGalpb1-OH | Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)Gal(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→ | G70519XK | WURCS=2.0/3,4,3/[a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-1-3/a3-b1_b4-c1_c2-d1 | null | null | null | {'GAL4-FUC5': {'2': {'phi': -65.99, 'psi': 131.83, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -76.25, 'psi': 139.29, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -67.63, 'psi': 138.55, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -97.36, 'psi': 131.11, 'strain': 2.153, 'linkage': '1-2'}, '6': {'phi': -77.... | {'GAL4-FUC5': {'2': {'phi': -65.99, 'psi': 131.83, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -76.33, 'psi': 139.34, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -67.61, 'psi': 138.57, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -97.35, 'psi': 131.19, 'strain': 2.153, 'linkage': '1-2'}, '6': {'phi': -77.... | {'GAL4-FUC5': {'2': {'phi': -65.99, 'psi': 131.83, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -76.25, 'psi': 139.29, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -67.63, 'psi': 138.55, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -97.36, 'psi': 131.11, 'strain': 2.153, 'linkage': '1-2'}, '6': {'phi': -77.... | null | 4 | null | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491953684', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491953684', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G56708PR', 'url': 'https://glytoucan.org/Structures/Glycans/G56708PR', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G56708PR', 'url': 'https://gnome.gl... | 873.46 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(1)Hex(2)dHex(1) % 691.253493175 | freeEnd--?D-Gal--3b1D-GlcNAc,p--4b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000036', 'name': 'Blood group H (type 2)', 'keywords': 'Blood group H; Blood group type 2'} | {'related_accession': 'G03577SC', 'relationship': 'ancestor'};{'related_accession': 'G11235SR', 'relationship': 'ancestor'};{'related_accession': 'G15776WE', 'relationship': 'ancestor'};{'related_accession': 'G55799EI', 'relationship': 'ancestor'};{'related_accession': 'G56390PW', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00083/snfg.svg | ./torsion_data/GS00083_torsion_data.txt | {'Cluster 0': {'count': 9356, '3_2_phi_mean': -74.88, '3_2_psi_mean': 115.63, '4_3_phi_mean': -78.8, '4_3_psi_mean': 133.15, '5_4_phi_mean': -70.25, '5_4_psi_mean': -116.29, '6_5_phi_mean': 69.13, '6_5_psi_mean': 68.47, '7_5_phi_mean': -66.94, '7_5_psi_mean': 141.61, '3_2_phi_std': 15.07, '3_2_psi_std': 29.15, '4_3_phi... | G16274HY | GS00083 | LFucpa1-2[DGalpa1-3]DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | LFucpa1-2[DGalpa1-3]DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcp | Fuc(a1-2)[Gal(a1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/5,6,5/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-2-4-5/a4-b1_b3-c1_c4-d1_d2-e1_d3-f1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-lgal-HEX-1:5|6:d,7b:a-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(2+1)6d,6:5o(3+1)7d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O)[C@H]4O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H](O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO | null | 1,015.36 | {'motif': 'G34881WK', 'motif_label': 'Blood group B (type 2)'} | Fuc(a1-2);Gal(a1-3) | {'Gal': 3, 'Fuc': 1, 'GlcNAc': 1, 'Glc': 1} | {'Hex': 4, 'HexNAc': 1, 'dHex': 1} | 16 | 19 | 30 | 11.102642 | {'Cluster 0': 31.18, 'Cluster 1': 29.07, 'Cluster 2': 24.35, 'Cluster 3': 9.66, 'Cluster 4': 5.74} | {'Cluster 0': 52.1581, 'Cluster 1': 30.2103, 'Cluster 2': 4.2296, 'Cluster 3': 3.9763, 'Cluster 4': 2.9297, 'Cluster 5': 1.6632, 'Cluster 6': 1.0566, 'Cluster 7': 1.0499, 'Cluster 8': 1.0399, 'Cluster 9': 0.46, 'Cluster 10': 0.35, 'Cluster 11': 0.3433, 'Cluster 12': 0.2333, 'Cluster 13': 0.1533, 'Cluster 14': 0.0933, '... | {'2': 0.6426163235291812, '3': 0.4199111496539724, '4': 0.25339762047345477, '5': 0.2496338551874362, '6': 0.2502140399229467, '7': 0.19704350369177445, '8': 0.24487484400262075} | {'0': [8, 15], '1': [1, 3, 4, 5, 7, 9, 11, 13, 14, 16], '2': [0, 10], '3': [12], '4': [2, 6]} | {'explained_variance_ratio': [0.1770072588793546, 0.14058959775737373, 0.06827544903076559, 0.04302260258895804, 0.040123071378791904, 0.03225529022515141, 0.030567368842962697, 0.028331115174476347, 0.02205003870604525, 0.01927803870839628], 'cumulative_variance': [0.1770072588793546, 0.3175968566367283, 0.38587230566... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2[DGalpa1-3]DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(a1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G07786FJ | WURCS=2.0/5,6,5/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-2-4-5/a4-b1_b3-c1_c4-d1_d2-e1_d3-f1 | LFucpa1-2[DGalpa1-3]DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpb1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G77593JU | WURCS=2.0/5,6,5/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-2-4-5/a4-b1_b3-c1_c4-d1_d2-e1_d3-f1 | null | null | null | {'GAL5-FUC7': {'2': {'phi': -72.85, 'psi': 142.7, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -58.03, 'psi': 146.01, 'strain': 1.49, 'linkage': '1-2'}, '4': {'phi': -63.56, 'psi': 137.08, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -65.47, 'psi': 142.21, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -57.1,... | {'GAL5-FUC7': {'2': {'phi': -72.85, 'psi': 142.7, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -58.03, 'psi': 146.03, 'strain': 1.49, 'linkage': '1-2'}, '4': {'phi': -63.48, 'psi': 137.05, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -65.47, 'psi': 142.23, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -57.07... | {'GAL5-FUC7': {'2': {'phi': -72.85, 'psi': 142.7, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -58.03, 'psi': 146.01, 'strain': 1.49, 'linkage': '1-2'}, '4': {'phi': -63.56, 'psi': 137.08, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -65.47, 'psi': 142.21, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -57.1,... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G16274HY'}]} | 6 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G16274HY', 'url': 'https://glycosmos.org/glycans/show/G16274HY'}, {'database': 'Subsumption', 'id': 'G77593JU', 'url': 'https://www.glygen.org/glycan/G77593JU'}], 'common_name': 'Human', 'glygen_name': '... | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Neo-lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G16274HY', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G16274... | {'id': '491843374', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491843374', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '14898', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '11016', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+11016', 'database': 'C... | 1,281.66 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 328 | Saccharide | HexNAc(1)Hex(4)dHex(1) % 1015.35914017 | freeEnd--?D-Glc--4b1D-Gal,p--3b1D-GlcNAc,p--4b1D-Gal,p(--2a1L-Fuc,p)--3a1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000015', 'name': 'a-Gal antigen', 'synonym': 'alpha-Gal antigen'};{'id': 'GGM.000036', 'name': 'Blood group H (type 2)', 'keywords': 'Blood group H; Blood group ... | {'related_accession': 'G07675OH', 'relationship': 'ancestor'};{'related_accession': 'G18632GW', 'relationship': 'ancestor'};{'related_accession': 'G25928EE', 'relationship': 'ancestor'};{'related_accession': 'G53549WY', 'relationship': 'ancestor'};{'related_accession': 'G79249VN', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00084/snfg.svg | ./torsion_data/GS00084_torsion_data.txt | {'Cluster 0': {'count': 10112, '3_2_phi_mean': -66.49, '3_2_psi_mean': 129.44, '4_3_phi_mean': -67.26, '4_3_psi_mean': 134.11, '3_2_phi_std': 6.06, '3_2_psi_std': 7.78, '4_3_phi_std': 6.13, '4_3_psi_std': 6.96}, 'Cluster 1': {'count': 7186, '3_2_phi_mean': -64.18, '3_2_psi_mean': 117.91, '4_3_phi_mean': -68.09, '4_3_ps... | G57284NN | GS00084 | LFucpa1-2DGalpb1-3DGlcpNAcb1-OH | LFucpa1-2DGalpb1-3DGlcpNAc | Fuc(a1-2)Gal(b1-3)GlcNAc | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-D-GlcNAc | WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3/a3-b1_b2-c1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(2+1)4d, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H](O)[C@H]1CO | null | 529.2 | null | Fuc(a1-2) | {'Fuc': 1, 'Gal': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'dHex': 1} | 7 | 10 | 15 | 10.257522 | {'Cluster 0': 33.7, 'Cluster 1': 23.95, 'Cluster 2': 21.43, 'Cluster 3': 11.02, 'Cluster 4': 9.9} | {'Cluster 0': 69.2264, 'Cluster 1': 13.6253, 'Cluster 2': 6.5927, 'Cluster 3': 6.346, 'Cluster 4': 0.8299, 'Cluster 5': 0.7933, 'Cluster 6': 0.7766, 'Cluster 7': 0.5899, 'Cluster 8': 0.4966, 'Cluster 9': 0.23, 'Cluster 10': 0.1866, 'Cluster 11': 0.1067, 'Cluster 12': 0.0667, 'Cluster 13': 0.0667, 'Cluster 14': 0.0667} | {'2': 0.2607458459988475, '3': 0.2450524869012487, '4': 0.2395902059149344, '5': 0.2091970888975421, '6': 0.2238724974623082, '7': 0.20871990968246867, '8': 0.2089328893867679} | {'0': [0, 11], '1': [1, 6, 8, 14], '2': [2, 3, 4, 5, 9, 10, 13], '3': [], '4': [7, 12]} | {'explained_variance_ratio': [0.13263450022930018, 0.09562944123897359, 0.06357363074400864, 0.053774297956046845, 0.041314218962716164, 0.03882598137543038, 0.034690216225557756, 0.0326071478402586, 0.02897380474942028, 0.026797379863658065], 'cumulative_variance': [0.13263450022930018, 0.22826394146827378, 0.29183757... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-3DGlcpNAca1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-α-D-GlcpNAc-(1→ | G43242UV | WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3/a3-b1_b2-c1 | LFucpa1-2DGalpb1-3DGlcpNAcb1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→ | G40696TO | WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3/a3-b1_b2-c1 | null | null | null | {'GAL3-FUC4': {'2': {'phi': -67.28, 'psi': 130.19, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -69.76, 'psi': 140.8, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -73.96, 'psi': 139.11, 'strain': 0.426, 'linkage': '1-2'}, '5': {'phi': -64.05, 'psi': 131.98, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -77.6... | {'GAL3-FUC4': {'2': {'phi': -67.28, 'psi': 130.19, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -69.75, 'psi': 140.76, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -73.91, 'psi': 139.09, 'strain': 0.426, 'linkage': '1-2'}, '5': {'phi': -64.1, 'psi': 131.94, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -77.6... | {'GAL3-FUC4': {'2': {'phi': -67.28, 'psi': 130.19, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -69.76, 'psi': 140.8, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -73.96, 'psi': 139.11, 'strain': 0.426, 'linkage': '1-2'}, '5': {'phi': -64.05, 'psi': 131.98, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -77.6... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G57284NN'}]};{'taxon_id': '210', 'taxon_label': 'Helicobacter pylori', 'evidence': [{'label': 'GlyTouCan(bcsdb)', 'id': 'glytoucan.org/Structures/Glycans/G57284NN'}, {'labe... | 3 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G57284NN', 'url': 'https://glycosmos.org/glycans/show/G57284NN'}, {'database': 'Subsumption', 'id': 'G40696TO', 'url': 'https://www.glygen.org/glycan/G40696TO'}], 'common_name': 'Human', 'glygen_name': '... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491856468', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491856468', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '2189', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10085', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+10085', 'database': 'Ca... | 669.36 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(1)Hex(1)dHex(1) % 529.200669675 | freeEnd--?D-GlcNAc--3b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000042', 'name': 'Blood group H (type 1)', 'keywords': 'Blood group H; Blood group type 1'} | {'related_accession': 'G02497EU', 'relationship': 'ancestor'};{'related_accession': 'G29711LC', 'relationship': 'ancestor'};{'related_accession': 'G34611YE', 'relationship': 'ancestor'};{'related_accession': 'G54129SE', 'relationship': 'ancestor'};{'related_accession': 'G66346JJ', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00085/snfg.svg | ./torsion_data/GS00085_torsion_data.txt | {'Cluster 0': {'count': 18134, '3_2_phi_mean': -79.79, '3_2_psi_mean': 101.62, '4_3_phi_mean': -74.43, '4_3_psi_mean': -121.7, '3_2_phi_std': 10.77, '3_2_psi_std': 12.88, '4_3_phi_std': 11.96, '4_3_psi_std': 17.78}, 'Cluster 1': {'count': 7719, '3_2_phi_mean': -75.27, '3_2_psi_mean': 124.39, '4_3_phi_mean': -75.69, '4_... | G67828VR | GS00085 | DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | DManpb1-4DGlcpNAcb1-4DGlcpNAc | Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-2-3/a4-b1_b4-c1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1CO | null | 586.22 | null | Man(b1-4) | {'GlcNAc': 2, 'Man': 1} | {'Hex': 1, 'HexNAc': 2} | 9 | 11 | 16 | 9.624482 | {'Cluster 0': 60.44, 'Cluster 1': 25.73, 'Cluster 2': 5.61, 'Cluster 3': 4.31, 'Cluster 4': 3.91} | {'Cluster 0': 84.0849, 'Cluster 1': 4.3629, 'Cluster 2': 3.3263, 'Cluster 3': 3.1997, 'Cluster 4': 2.1098, 'Cluster 5': 1.0466, 'Cluster 6': 0.8899, 'Cluster 7': 0.5333, 'Cluster 8': 0.19, 'Cluster 9': 0.1233, 'Cluster 10': 0.09, 'Cluster 11': 0.0233, 'Cluster 12': 0.02} | {'2': 0.5407782679070742, '3': 0.5824337040254767, '4': 0.3329599862569454, '5': 0.3119248669280778, '6': 0.2865460564763755, '7': 0.24932966435871912, '8': 0.24418719302461991} | {'0': [1, 3, 4, 5, 9, 12], '1': [8], '2': [7, 10], '3': [2, 6, 11], '4': [0]} | {'explained_variance_ratio': [0.11820858955515513, 0.11307835618080281, 0.08213298148809128, 0.06298734180744835, 0.05502281358230292, 0.043720226820642576, 0.03800274069920374, 0.02918398626954243, 0.020732344173588324, 0.018367165612233408], 'cumulative_variance': [0.11820858955515513, 0.23128694573595793, 0.31341992... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G65996GC | WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-2-3/a4-b1_b4-c1 | DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G15407YE | WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1 | null | null | null | {'NDG2-NAG3': {'2': {'phi': -70.85, 'psi': 113.48, 'strain': -0.0, 'linkage': '1-4'}, '3': {'phi': -74.91, 'psi': 116.49, 'strain': -0.0, 'linkage': '1-4'}, '4': {'phi': -82.3, 'psi': 97.49, 'strain': 0.7, 'linkage': '1-4'}, '5': {'phi': -81.93, 'psi': -67.41, 'strain': 2.135, 'linkage': '1-4'}, '6': {'phi': -67.52, 'p... | {'NDG2-NAG3': {'2': {'phi': -70.85, 'psi': 113.48, 'strain': -0.0, 'linkage': '1-4'}, '3': {'phi': -74.86, 'psi': 116.45, 'strain': -0.0, 'linkage': '1-4'}, '4': {'phi': -82.25, 'psi': 97.49, 'strain': 0.7, 'linkage': '1-4'}, '5': {'phi': -81.87, 'psi': -67.45, 'strain': 2.135, 'linkage': '1-4'}, '6': {'phi': -67.47, '... | {'NDG2-NAG3': {'2': {'phi': -70.85, 'psi': 113.48, 'strain': -0.0, 'linkage': '1-4'}, '3': {'phi': -74.91, 'psi': 116.49, 'strain': -0.0, 'linkage': '1-4'}, '4': {'phi': -82.3, 'psi': 97.49, 'strain': 0.7, 'linkage': '1-4'}, '5': {'phi': -81.93, 'psi': -67.41, 'strain': 2.135, 'linkage': '1-4'}, '6': {'phi': -67.52, 'p... | {'taxon_id': '10029', 'taxon_label': 'Cricetulus griseus (Chinese hamster)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G67828VR'}]};{'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Struct... | 3 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G15407YE', 'url': 'https://www.glygen.org/glycan/G15407YE'}, {'database': 'Subsumption', 'id': 'G17792PO', 'url': 'https://www.glygen.org/glycan/G17792PO'}], 'common_name': 'Bovine', 'glygen_name'... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491859808', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491859808', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1562', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '16806', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+16806', 'database': 'Ca... | 740.39 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(2)Hex(1) % 586.22213341 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G05159JL', 'relationship': 'ancestor'};{'related_accession': 'G48094EU', 'relationship': 'ancestor'};{'related_accession': 'G58001LT', 'relationship': 'ancestor'};{'related_accession': 'G92411CL', 'relationship': 'ancestor'};{'related_accession': 'G58001LT', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00086/snfg.svg | ./torsion_data/GS00086_torsion_data.txt | {'Cluster 0': {'count': 32066, '3_2_phi_mean': -77.59, '3_2_psi_mean': 58.49, '4_2_phi_mean': -79.74, '4_2_psi_mean': -128.88, '5_4_phi_mean': -79.84, '5_4_psi_mean': -122.25, '6_5_phi_mean': 78.8, '6_5_psi_mean': 87.53, '10_5_phi_mean': 72.17, '10_5_psi_mean': 128.9, '7_6_phi_mean': -85.12, '7_6_psi_mean': -79.35, '8_... | G54258NG | GS00086 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-6-7/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,17s:n-acety... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[... | FA2G2S2 | 2,368.84 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Neu5Ac(a2-6);Fuc(a1-6) | {'GlcNAc': 4, 'Man': 3, 'Neu5Ac': 2, 'Gal': 2, 'Fuc': 1} | {'Hex': 5, 'HexNAc': 4, 'Neu5Ac': 2, 'dHex': 1} | 45 | 41 | 66 | 14.286244 | {'Cluster 0': 40.08, 'Cluster 1': 25.44, 'Cluster 2': 16.11, 'Cluster 3': 13.79, 'Cluster 4': 4.58} | {'Cluster 0': 17.797, 'Cluster 1': 15.9709, 'Cluster 2': 11.8776, 'Cluster 3': 5.5619, 'Cluster 4': 4.3583, 'Cluster 5': 4.2558, 'Cluster 6': 4.2021, 'Cluster 7': 4.0308, 'Cluster 8': 3.7809, 'Cluster 9': 3.7321, 'Cluster 10': 3.2409, 'Cluster 11': 2.8222, 'Cluster 12': 2.646, 'Cluster 13': 2.3423, 'Cluster 14': 1.8123... | {'2': 0.33912814313316064, '3': 0.34561749574446515, '4': 0.41440182621552735, '5': 0.42129904074378766, '6': 0.2970286899566397, '7': 0.2934226556276505, '8': 0.26366989267101537} | {'0': [2, 4, 8, 9, 17, 18, 27, 30], '1': [5, 6, 15, 22], '2': [0, 20, 25, 31], '3': [1, 7, 12, 13, 16, 19, 24, 26, 28, 29], '4': [3, 10, 11, 14, 21, 23, 32]} | {'explained_variance_ratio': [0.1641420149085209, 0.128032230644139, 0.0891315600797814, 0.04926455921594587, 0.04520544863997677, 0.03589964130914625, 0.03282357732653511, 0.026392855418178585, 0.02180852592198079, 0.018686752865914813], 'cumulative_variance': [0.1641420149085209, 0.2921742455526599, 0.381305805632441... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G46854VN | WURCS=2.0/7,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-6-7/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G56749GV | WURCS=2.0/6,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4-5-6/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | FA2G2S2 | null | Biantennary N-Glycan;Complex N-Glycan;Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG7': {'2': {'phi': -91.17, 'psi': -62.14, 'strain': 0.567, 'linkage': '1-2'}, '3': {'phi': -64.16, 'psi': -70.54, 'strain': 0.558, 'linkage': '1-2'}, '4': {'phi': -82.66, 'psi': -129.12, 'strain': 1.753, 'linkage': '1-2'}, '5': {'phi': -88.3, 'psi': -74.96, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -66.9... | {'MAN6-NAG7': {'2': {'phi': -91.17, 'psi': -62.14, 'strain': 0.567, 'linkage': '1-2'}, '3': {'phi': -64.17, 'psi': -70.52, 'strain': 0.558, 'linkage': '1-2'}, '4': {'phi': -82.66, 'psi': -129.13, 'strain': 1.753, 'linkage': '1-2'}, '5': {'phi': -88.36, 'psi': -74.91, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -66.... | {'MAN6-NAG7': {'2': {'phi': -91.17, 'psi': -62.14, 'strain': 0.567, 'linkage': '1-2'}, '3': {'phi': -64.16, 'psi': -70.54, 'strain': 0.558, 'linkage': '1-2'}, '4': {'phi': -82.66, 'psi': -129.12, 'strain': 1.753, 'linkage': '1-2'}, '5': {'phi': -88.3, 'psi': -74.96, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -66.9... | {'taxon_id': '10029', 'taxon_label': 'Cricetulus griseus (Chinese hamster)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G54258NG'}]};{'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Struct... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00087/snfg.svg | ./torsion_data/GS00087_torsion_data.txt | {'Cluster 0': {'count': 15521, '3_2_phi_mean': 79.65, '3_2_psi_mean': -143.07, '5_3_phi_mean': -85.05, '5_3_psi_mean': 125.95, '6_5_phi_mean': 74.24, '6_5_psi_mean': -113.92, '8_6_phi_mean': -85.36, '8_6_psi_mean': 124.26, '9_8_phi_mean': 78.34, '9_8_psi_mean': -145.3, '11_9_phi_mean': -76.53, '11_9_psi_mean': 129.76, ... | G98433SN | GS00087 | DGlcpNS[3S,6S]a1-4LIdopA[2S]a1-4DGlcpNS[3S,6S]a1-4DGlcpA[2S]b1-4DGlcpNAc[3S,6S]a1-4DGlcpA[2S]b1-4DGlcpNS[3S,6S]a1-4LIdopA[2S]a1-4DGlcpNAc[3S,6S]a1-4DGlcpA[2S]b1-OH | DGlcpNS[3S,6S]a1-4LIdopA[2S]a1-4DGlcpNS[3S,6S]a1-4DGlcpA[2S]b1-4DGlcpNAc[3S,6S]a1-4DGlcpA[2S]b1-4DGlcpNS[3S,6S]a1-4LIdopA[2S]a1-4DGlcpNAc[3S,6S]a1-4DGlcpA[2S] | GlcNS3S6S(a1-4)IdoA2S(a1-4)GlcNS3S6S(a1-4)GlcA2S(b1-4)GlcNAc3S6S(a1-4)GlcA2S(b1-4)GlcNS3S6S(a1-4)IdoA2S(a1-4)GlcNAc3S6S(a1-4)GlcA2S | α-D-GlcpN2,3,6S3-(1→4)-α-L-IdopA2S-(1→4)-α-D-GlcpN2,3,6S3-(1→4)-β-D-GlcpA2S-(1→4)-α-D-GlcpNAc3,6S2-(1→4)-β-D-GlcpA2S-(1→4)-α-D-GlcpN2,3,6S3-(1→4)-α-L-IdopA2S-(1→4)-α-D-GlcpNAc3,6S2-(1→4)-D-GlcA2S | WURCS=2.0/5,10,9/[u2122A_2*OSO/3=O/3=O][a2122h-1a_1-5_2*NCC/3=O_3*OSO/3=O/3=O_6*OSO/3=O/3=O][a2121A-1a_1-5_2*OSO/3=O/3=O][a2122h-1a_1-5_2*NSO/3=O/3=O_3*OSO/3=O/3=O_6*OSO/3=O/3=O][a2122A-1b_1-5_2*OSO/3=O/3=O]/1-2-3-4-5-2-5-4-3-4/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1 | RES,1b:b-dglc-HEX-1:5,2s:sulfate,3b:a-dglc-HEX-1:5,4s:n-acetyl,5b:a-lido-HEX-1:5,6s:sulfate,7b:a-dglc-HEX-1:5,8s:n-sulfate,9b:b-dglc-HEX-1:5,10s:sulfate,11b:a-dglc-HEX-1:5,12s:n-acetyl,13b:b-dglc-HEX-1:5,14s:sulfate,15b:a-dglc-HEX-1:5,16s:n-sulfate,17b:a-lido-HEX-1:5,18s:sulfate,19b:a-dglc-HEX-1:5,20s:n-sulfate,LIN,1:1... | O1C(O)[C@H](OS(=O)(=O)O)[C@@H](O)[C@H](O[C@H]2O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]3O[C@@H](C(=O)O)[C@@H](O[C@H]4O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]5O[C@H](C(=O)O)[C@@H](O[C@H]6O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]7O[C@H](C(=O)O)[C@@H](O[C@H]8O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]9O[C@@H](C(=O)O)[C@@H](O[C@H]%10O[C@H](COS(=O)(=O)... | null | 3,226.76 | null | GlcNS3S6S(a1-4) | {'GlcNS3S6S': 3, 'GlcA2S': 3, 'IdoA2S': 2, 'GlcNAc3S6S': 2} | {'HexA': 5, 'HexN': 3, 'HexNAc': 2, 'S': 18} | 1 | 5 | 6 | 13.987967 | {'Cluster 0': 51.73, 'Cluster 1': 18.36, 'Cluster 2': 14.02, 'Cluster 3': 8.24, 'Cluster 4': 7.65} | {'Cluster 0': 30.6169, 'Cluster 1': 17.0883, 'Cluster 2': 11.5488, 'Cluster 3': 7.4593, 'Cluster 4': 4.4429, 'Cluster 5': 3.7263, 'Cluster 6': 3.5863, 'Cluster 7': 3.3297, 'Cluster 8': 3.0864, 'Cluster 9': 2.8264, 'Cluster 10': 2.3764, 'Cluster 11': 1.5165, 'Cluster 12': 1.4265, 'Cluster 13': 1.1632, 'Cluster 14': 0.98... | {'2': 0.6234004599537131, '3': 0.3187697462849092, '4': 0.2925305216790493, '5': 0.28098312751319365, '6': 0.3118387166495531, '7': 0.29215329581013083, '8': 0.23647168483865924} | {'0': [6, 17], '1': [2, 5, 7, 10, 19, 20, 24, 27, 28], '2': [4, 8, 11, 14, 15, 18, 29], '3': [1, 3, 9, 13, 16, 21, 23, 26, 30], '4': [0, 12, 22, 25]} | {'explained_variance_ratio': [0.30941273619152165, 0.059601001773197784, 0.03382760476071919, 0.02964145218260033, 0.024089157325684216, 0.02056584848309994, 0.01856088049624375, 0.01686257642693379, 0.014701998323186614, 0.013691751861731941], 'cumulative_variance': [0.30941273619152165, 0.3690137379647194, 0.40284134... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | DGlcpNS[3S,6S]a1-4LIdopA[2S]a1-4DGlcpNS[3S,6S]a1-4DGlcpA[2S]b1-4DGlcpNAc[3S,6S]a1-4DGlcpA[2S]b1-4DGlcpNS[3S,6S]a1-4LIdopA[2S]a1-4DGlcpNAc[3S,6S]a1-4DGlcpA[2S]a1-OH | GlcNS3S6S(a1-4)IdoA2S(a1-4)GlcNS3S6S(a1-4)GlcA2S(b1-4)GlcNAc3S6S(a1-4)GlcA2S(b1-4)GlcNS3S6S(a1-4)IdoA2S(a1-4)GlcNAc3S6S(a1-4)GlcA2S(a1- | α-D-GlcpN2,3,6S3-(1→4)-α-L-IdopA2S-(1→4)-α-D-GlcpN2,3,6S3-(1→4)-β-D-GlcpA2S-(1→4)-α-D-GlcpNAc3,6S2-(1→4)-β-D-GlcpA2S-(1→4)-α-D-GlcpN2,3,6S3-(1→4)-α-L-IdopA2S-(1→4)-α-D-GlcpNAc3,6S2-(1→4)-α-D-GlcpA2S-(1→ | null | WURCS=2.0/5,10,9/[a2122A-1a_1-5_2*OSO/3=O/3=O][a2122h-1a_1-5_2*NCC/3=O_3*OSO/3=O/3=O_6*OSO/3=O/3=O][a2121A-1a_1-5_2*OSO/3=O/3=O][a2122h-1a_1-5_2*NSO/3=O/3=O_3*OSO/3=O/3=O_6*OSO/3=O/3=O][a2122A-1b_1-5_2*OSO/3=O/3=O]/1-2-3-4-5-2-5-4-3-4/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1 | DGlcpNS[3S,6S]a1-4LIdopA[2S]a1-4DGlcpNS[3S,6S]a1-4DGlcpA[2S]b1-4DGlcpNAc[3S,6S]a1-4DGlcpA[2S]b1-4DGlcpNS[3S,6S]a1-4LIdopA[2S]a1-4DGlcpNAc[3S,6S]a1-4DGlcpA[2S]b1-OH | GlcNS3S6S(a1-4)IdoA2S(a1-4)GlcNS3S6S(a1-4)GlcA2S(b1-4)GlcNAc3S6S(a1-4)GlcA2S(b1-4)GlcNS3S6S(a1-4)IdoA2S(a1-4)GlcNAc3S6S(a1-4)GlcA2S(b1- | null | null | null | null | null | GAG | {'BDP2-NDG3': {'2': {'phi': 75.43, 'psi': 88.97, 'strain': 1.945, 'linkage': '1-4'}, '3': {'phi': 83.18, 'psi': 91.73, 'strain': 1.896, 'linkage': '1-4'}, '4': {'phi': 102.62, 'psi': 87.11, 'strain': 3.898, 'linkage': '1-4'}, '5': {'phi': 54.98, 'psi': 97.81, 'strain': 3.485, 'linkage': '1-4'}, '6': {'phi': 59.25, 'psi... | {} | {} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00088/snfg.svg | ./torsion_data/GS00088_torsion_data.txt | {'Cluster 0': {'count': 11274, '3_2_phi_mean': -70.9, '3_2_psi_mean': 119.06, '4_3_phi_mean': 64.89, '4_3_psi_mean': 68.13, '5_3_phi_mean': -66.38, '5_3_psi_mean': 142.67, '3_2_phi_std': 8.9, '3_2_psi_std': 14.15, '4_3_phi_std': 10.54, '4_3_psi_std': 9.49, '5_3_phi_std': 11.56, '5_3_psi_std': 13.72}, 'Cluster 1': {'cou... | G62421SJ | GS00088 | LFucpa1-2[DGalpa1-3]DGalpb1-4DGlcpa1-OH | LFucpa1-2[DGalpa1-3]DGalpb1-4DGlcp | Fuc(a1-2)[Gal(a1-3)]Gal(b1-4)Glc | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,4,3/[u2122h][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-4/a4-b1_b2-c1_b3-d1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:a-lgal-HEX-1:5|6:d,4b:a-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2o(2+1)3d,3:2o(3+1)4d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H]2O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H]1CO | null | 650.23 | {'motif': 'G24432YB', 'motif_label': 'a-Gal antigen'} | Fuc(a1-2);Gal(a1-3) | {'Gal': 2, 'Fuc': 1, 'Glc': 1} | {'Hex': 3, 'dHex': 1} | 9 | 13 | 20 | 8.804407 | {'Cluster 0': 37.58, 'Cluster 1': 37.43, 'Cluster 2': 15.4, 'Cluster 3': 5.8, 'Cluster 4': 3.8} | {'Cluster 0': 43.3957, 'Cluster 1': 34.2532, 'Cluster 2': 8.4158, 'Cluster 3': 4.4429, 'Cluster 4': 4.3062, 'Cluster 5': 2.2864, 'Cluster 6': 1.4299, 'Cluster 7': 0.6533, 'Cluster 8': 0.6299, 'Cluster 9': 0.13, 'Cluster 10': 0.0567} | {'2': 0.7876201776606887, '3': 0.4917380447918693, '4': 0.30652315724624296, '5': 0.2804723855109145, '6': 0.29113262902250814, '7': 0.3161883835679113, '8': 0.2977746159075628} | {'0': [2, 3, 9], '1': [6, 7], '2': [1, 5, 10], '3': [4], '4': [0, 8]} | {'explained_variance_ratio': [0.33909506649207866, 0.06371888631751016, 0.048737330043959616, 0.03934894737625218, 0.035197036360063244, 0.030663141864574382, 0.02271299098547485, 0.01751358650935099, 0.015587827501557775, 0.014513202239030786], 'cumulative_variance': [0.33909506649207866, 0.4028139528095888, 0.4515512... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2[DGalpa1-3]DGalpb1-4DGlcpa1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1-4)Glc(a1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G85155ES | WURCS=2.0/4,4,3/[a2122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-4/a4-b1_b2-c1_b3-d1 | LFucpa1-2[DGalpa1-3]DGalpb1-4DGlcpb1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1-4)Glc(b1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G06873PC | WURCS=2.0/4,4,3/[a2122h-1b_1-5][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-4/a4-b1_b2-c1_b3-d1 | null | null | null | {'GAL3-FUC5': {'2': {'phi': -67.17, 'psi': 145.53, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -64.37, 'psi': 134.45, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -72.04, 'psi': 142.86, 'strain': 0.496, 'linkage': '1-2'}, '5': {'phi': -77.58, 'psi': 97.19, 'strain': 1.215, 'linkage': '1-2'}, '6': {'phi': -71.4... | {'GAL3-FUC5': {'2': {'phi': -67.17, 'psi': 145.53, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -64.41, 'psi': 134.51, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -72.07, 'psi': 142.89, 'strain': 0.496, 'linkage': '1-2'}, '5': {'phi': -77.6, 'psi': 97.18, 'strain': 1.215, 'linkage': '1-2'}, '6': {'phi': -71.48... | {'GAL3-FUC5': {'2': {'phi': -67.17, 'psi': 145.53, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -64.37, 'psi': 134.45, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -72.04, 'psi': 142.86, 'strain': 0.496, 'linkage': '1-2'}, '5': {'phi': -77.58, 'psi': 97.19, 'strain': 1.215, 'linkage': '1-2'}, '6': {'phi': -71.4... | null | 4 | {'taxid': 10114, 'name': 'Rattus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G06873PC', 'url': 'https://www.glygen.org/glycan/G06873PC'}], 'common_name': 'Rattus', 'glygen_name': 'Rattus', 'reference_species': 'Rattus [10114]'} | {'type': {'name': 'Human Milk Oligosaccharide'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G62421SJ', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G62421... | {'id': '491906559', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491906559', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '3149', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10813', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+10813', 'database': 'Ca... | 832.43 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | Hex(3)dHex(1) % 650.22694407 | freeEnd--?D-Glc--4b1D-Gal,p(--2a1L-Fuc,p)--3a1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000015', 'name': 'a-Gal antigen', 'synonym': 'alpha-Gal antigen'} | {'related_accession': 'G21161GI', 'relationship': 'ancestor'};{'related_accession': 'G48927BJ', 'relationship': 'ancestor'};{'related_accession': 'G90947HZ', 'relationship': 'ancestor'};{'related_accession': 'G96717UK', 'relationship': 'ancestor'};{'related_accession': 'G48927BJ', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00089/snfg.svg | ./torsion_data/GS00089_torsion_data.txt | {'Cluster 0': {'count': 15710, '3_2_phi_mean': -76.28, '3_2_psi_mean': 13.82, '6_2_phi_mean': -74.79, '6_2_psi_mean': -128.11, '4_3_phi_mean': -77.64, '4_3_psi_mean': -115.69, '7_6_phi_mean': -76.39, '7_6_psi_mean': -114.78, '3_2_phi_std': 23.38, '3_2_psi_std': 145.81, '6_2_phi_std': 14.1, '6_2_psi_std': 59.94, '4_3_ph... | G83546KK | GS00089 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DGalpNAca1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DGalpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)[Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)]GalNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/4,7,6/[u2112h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-3-4/a3-b1_a6-e1_b4-c1_c3-d2_e4-f1_f3-g2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,7s:n-acetyl,8b:b-dglc-HEX-1:5,9s:n-acetyl,10b:b-dgal-HEX-1:5,11b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,12s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+2)6d,6:6d(5+1)7n,7:1o(6+1)8d... | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)[... | null | 1,533.55 | {'motif': 'G00065MO', 'motif_label': 'Polysialic acid'};{'motif': 'G00038MO', 'motif_label': 'O-Glycan core 4 fuzzy'} | Neu5Ac(a2-3) | {'Neu5Ac': 2, 'Gal': 2, 'GlcNAc': 2, 'GalNAc': 1} | {'Hex': 2, 'HexNAc': 3, 'Neu5Ac': 2} | 30 | 27 | 42 | 13.15811 | {'Cluster 0': 26.18, 'Cluster 1': 25.77, 'Cluster 2': 24.33, 'Cluster 3': 21.01, 'Cluster 4': 2.7} | {'Cluster 0': 24.1926, 'Cluster 1': 15.5334, 'Cluster 2': 10.9722, 'Cluster 3': 8.9341, 'Cluster 4': 8.9058, 'Cluster 5': 6.4877, 'Cluster 6': 5.6861, 'Cluster 7': 3.8796, 'Cluster 8': 3.0664, 'Cluster 9': 2.8131, 'Cluster 10': 2.4298, 'Cluster 11': 2.2964, 'Cluster 12': 0.7883, 'Cluster 13': 0.5683, 'Cluster 14': 0.54... | {'2': 0.4261301540442048, '3': 0.40748872312887546, '4': 0.3105249291671075, '5': 0.2669173803532666, '6': 0.23385262674249083, '7': 0.20548270875838118, '8': 0.2537902551195475} | {'0': [2, 5, 12, 15, 16], '1': [4, 6, 9, 22], '2': [0, 10, 20, 23], '3': [7, 17, 21, 25], '4': [1, 3, 8, 11, 13, 14, 18, 19, 24]} | {'explained_variance_ratio': [0.2935643148876374, 0.09234108546178865, 0.052243779474787845, 0.04317696227767196, 0.03896224799843219, 0.03647131918605488, 0.03291384696444531, 0.019767713609984115, 0.017795292878213378, 0.015382046562525365], 'cumulative_variance': [0.2935643148876374, 0.38590540034942605, 0.438149179... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DGalpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)[Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)]GalNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G55144QZ | WURCS=2.0/4,7,6/[a2112h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-3-4/a3-b1_a6-e1_b4-c1_c3-d2_e4-f1_f3-g2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DGalpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)[Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)]GalNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G82862JX | WURCS=2.0/4,7,6/[a2112h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-3-4/a3-b1_a6-e1_b4-c1_c3-d2_e4-f1_f3-g2 | null | null | null | {'A2G2-NAG6': {'2': {'phi': -87.75, 'psi': -165.86, 'strain': 1.064, 'linkage': '1-3'}, '3': {'phi': -69.77, 'psi': -149.72, 'strain': 0.928, 'linkage': '1-3'}, '4': {'phi': -66.03, 'psi': -141.59, 'strain': 0.928, 'linkage': '1-3'}, '5': {'phi': -67.23, 'psi': -160.62, 'strain': 1.719, 'linkage': '1-3'}, '6': {'phi': ... | {'A2G2-NAG6': {'2': {'phi': -87.75, 'psi': -165.86, 'strain': 1.064, 'linkage': '1-3'}, '3': {'phi': -69.76, 'psi': -149.71, 'strain': 0.928, 'linkage': '1-3'}, '4': {'phi': -66.05, 'psi': -141.58, 'strain': 0.928, 'linkage': '1-3'}, '5': {'phi': -67.27, 'psi': -160.59, 'strain': 1.719, 'linkage': '1-3'}, '6': {'phi': ... | {'A2G2-NAG6': {'2': {'phi': -87.75, 'psi': -165.86, 'strain': 1.064, 'linkage': '1-3'}, '3': {'phi': -69.77, 'psi': -149.72, 'strain': 0.928, 'linkage': '1-3'}, '4': {'phi': -66.03, 'psi': -141.59, 'strain': 0.928, 'linkage': '1-3'}, '5': {'phi': -67.23, 'psi': -160.62, 'strain': 1.719, 'linkage': '1-3'}, '6': {'phi': ... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00090/snfg.svg | ./torsion_data/GS00090_torsion_data.txt | {'Cluster 0': {'count': 21937, '3_2_phi_mean': -76.26, '3_2_psi_mean': -20.36, '4_2_phi_mean': -76.86, '4_2_psi_mean': 112.87, '5_4_phi_mean': -76.8, '5_4_psi_mean': -124.44, '3_2_phi_std': 16.64, '3_2_psi_std': 166.0, '4_2_phi_std': 8.68, '4_2_psi_std': 12.15, '5_4_phi_std': 27.18, '5_4_psi_std': 21.07}, 'Cluster 1': ... | G32601MJ | GS00090 | DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/4,4,3/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1221m-1a_1-5]/1-2-3-4/a4-b1_a6-d1_b4-c1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:1o(6+1)6d, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1CO[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O | null | 732.28 | null | Man(b1-4);Fuc(a1-6) | {'GlcNAc': 2, 'Man': 1, 'Fuc': 1} | {'Hex': 1, 'HexNAc': 2, 'dHex': 1} | 11 | 13 | 20 | 10.510982 | {'Cluster 0': 54.84, 'Cluster 1': 18.7, 'Cluster 2': 9.94, 'Cluster 3': 8.34, 'Cluster 4': 8.19} | {'Cluster 0': 58.1542, 'Cluster 1': 10.389, 'Cluster 2': 10.369, 'Cluster 3': 7.5617, 'Cluster 4': 3.7646, 'Cluster 5': 3.0722, 'Cluster 6': 2.4523, 'Cluster 7': 1.2699, 'Cluster 8': 0.9174, 'Cluster 9': 0.7974, 'Cluster 10': 0.3525, 'Cluster 11': 0.3425, 'Cluster 12': 0.295, 'Cluster 13': 0.2525, 'Cluster 14': 0.01} | {'2': 0.3212566808804075, '3': 0.34256686102280626, '4': 0.33381330139983334, '5': 0.31584641225072324, '6': 0.266471653963771, '7': 0.27988527878196534, '8': 0.24282209708408017} | {'0': [0, 10], '1': [7], '2': [6, 11], '3': [1, 2, 3, 4, 5, 8, 12, 13], '4': [9, 14]} | {'explained_variance_ratio': [0.14276049472325184, 0.08799899008207117, 0.08304506797789168, 0.0661206225895788, 0.05074692716898599, 0.04268361684594809, 0.0360305181131646, 0.03524820310064454, 0.02988012427741602, 0.025536464536342778], 'cumulative_variance': [0.14276049472325184, 0.230759484805323, 0.31380455278321... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G92744LV | WURCS=2.0/4,4,3/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1221m-1a_1-5]/1-2-3-4/a4-b1_a6-d1_b4-c1 | DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G32152BH | WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1221m-1a_1-5]/1-1-2-3/a4-b1_a6-d1_b4-c1 | null | null | null | {'NDG2-NAG4': {'2': {'phi': -86.53, 'psi': 113.13, 'strain': 0.5, 'linkage': '1-4'}, '3': {'phi': -78.64, 'psi': 102.29, 'strain': 0.169, 'linkage': '1-4'}, '4': {'phi': -79.38, 'psi': 101.31, 'strain': 0.169, 'linkage': '1-4'}, '5': {'phi': -67.41, 'psi': 129.98, 'strain': 0.031, 'linkage': '1-4'}, '6': {'phi': -73.79... | {'NDG2-NAG4': {'2': {'phi': -86.53, 'psi': 113.13, 'strain': 0.5, 'linkage': '1-4'}, '3': {'phi': -78.58, 'psi': 102.25, 'strain': 0.169, 'linkage': '1-4'}, '4': {'phi': -79.39, 'psi': 101.3, 'strain': 0.169, 'linkage': '1-4'}, '5': {'phi': -67.37, 'psi': 129.95, 'strain': 0.031, 'linkage': '1-4'}, '6': {'phi': -73.78,... | {'NDG2-NAG4': {'2': {'phi': -86.53, 'psi': 113.13, 'strain': 0.5, 'linkage': '1-4'}, '3': {'phi': -78.64, 'psi': 102.29, 'strain': 0.169, 'linkage': '1-4'}, '4': {'phi': -79.38, 'psi': 101.31, 'strain': 0.169, 'linkage': '1-4'}, '5': {'phi': -67.41, 'psi': 129.98, 'strain': 0.031, 'linkage': '1-4'}, '6': {'phi': -73.79... | null | 4 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G27139SJ', 'url': 'https://www.glygen.org/glycan/G27139SJ'}, {'database': 'Subsumption', 'id': 'G32152BH', 'url': 'https://www.glygen.org/glycan/G32152BH'}], 'common_name': 'Human', 'glygen_name... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491889125', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491889125', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '5452', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '19027', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+19027', 'database': 'Ca... | 914.48 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(2)Hex(1)dHex(1) % 732.28004228 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G16136AD', 'relationship': 'ancestor'};{'related_accession': 'G28400GY', 'relationship': 'ancestor'};{'related_accession': 'G76589GU', 'relationship': 'ancestor'};{'related_accession': 'G94583DZ', 'relationship': 'ancestor'};{'related_accession': 'G97803FU', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00091/snfg.svg | ./torsion_data/GS00091_torsion_data.txt | {'Cluster 0': {'count': 8869, '3_2_phi_mean': 55.09, '3_2_psi_mean': 66.1, '4_2_phi_mean': -68.08, '4_2_psi_mean': 142.38, '3_2_phi_std': 7.55, '3_2_psi_std': 8.4, '4_2_phi_std': 7.63, '4_2_psi_std': 9.41}, 'Cluster 1': {'count': 8361, '3_2_phi_mean': 70.27, '3_2_psi_mean': 70.38, '4_2_phi_mean': -61.73, '4_2_psi_mean'... | G30056KC | GS00091 | DGalpNAca1-3[LFucpa1-2]DGalpb1-OH | DGalpNAca1-3[LFucpa1-2]DGalp | Fuc(a1-2)[GalNAc(a1-3)]Gal | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-D-Gal | WURCS=2.0/3,3,2/[u2112h][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3/a2-b1_a3-c1 | RES,1b:b-dgal-HEX-1:5,2b:a-lgal-HEX-1:5|6:d,3b:a-dgal-HEX-1:5,4s:n-acetyl,LIN,1:1o(2+1)2d,2:1o(3+1)3d,3:3d(2+1)4n, | O1C(O)[C@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@@H](O[C@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO | null | 529.2 | null | GalNAc(a1-3);Fuc(a1-2) | {'Fuc': 1, 'GalNAc': 1, 'Gal': 1} | {'Hex': 1, 'HexNAc': 1, 'dHex': 1} | 7 | 10 | 15 | 10.008491 | {'Cluster 0': 29.56, 'Cluster 1': 27.87, 'Cluster 2': 22.31, 'Cluster 3': 14.85, 'Cluster 4': 5.41} | {'Cluster 0': 41.8425, 'Cluster 1': 23.9843, 'Cluster 2': 15.0685, 'Cluster 3': 10.9122, 'Cluster 4': 4.2329, 'Cluster 5': 1.4632, 'Cluster 6': 0.9732, 'Cluster 7': 0.5566, 'Cluster 8': 0.39, 'Cluster 9': 0.2033, 'Cluster 10': 0.19, 'Cluster 11': 0.09, 'Cluster 12': 0.0767, 'Cluster 13': 0.0167} | {'2': 0.3758848147926639, '3': 0.21248631857862857, '4': 0.2745266048068597, '5': 0.25630725158866613, '6': 0.24169423497554282, '7': 0.24011884438492304, '8': 0.2419548646936512} | {'0': [3, 4], '1': [6], '2': [1, 7, 13], '3': [0, 2, 5, 9, 10, 11], '4': [8, 12]} | {'explained_variance_ratio': [0.1614526377467621, 0.08879097731894661, 0.06504308528147491, 0.05861163470524957, 0.04522290182830595, 0.04032645717101953, 0.033035832826628496, 0.02682831809039917, 0.022795663879115285, 0.021398248320187576], 'cumulative_variance': [0.1614526377467621, 0.2502436150657087, 0.31528670034... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 1.5 | DGalpNAca1-3[LFucpa1-2]DGalpa1-OH | Fuc(a1-2)[GalNAc(a1-3)]Gal(a1- | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-α-D-Galp-(1→ | G15611BA | WURCS=2.0/3,3,2/[a2112h-1a_1-5][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3/a2-b1_a3-c1 | DGalpNAca1-3[LFucpa1-2]DGalpb1-OH | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1- | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→ | G00066MO | WURCS=2.0/3,3,2/[a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3/a2-b1_a3-c1 | null | null | null | {'GAL2-FUC4': {'2': {'phi': -76.48, 'psi': 144.16, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -63.93, 'psi': 148.65, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -66.4, 'psi': 138.32, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -74.71, 'psi': 137.52, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -98.8... | {'GAL2-FUC4': {'2': {'phi': -76.48, 'psi': 144.16, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -63.93, 'psi': 148.64, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -66.39, 'psi': 138.3, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -74.7, 'psi': 137.51, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -98.95... | {'GAL2-FUC4': {'2': {'phi': -76.48, 'psi': 144.16, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -63.93, 'psi': 148.65, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -66.4, 'psi': 138.32, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -74.71, 'psi': 137.52, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -98.8... | {'taxon_id': '10114', 'taxon_label': 'Rattus', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G30056KC'}]};{'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G30056KC'}]};{'taxon_id'... | 3 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G30056KC', 'url': 'https://glycosmos.org/glycans/show/G30056KC'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'};{'taxid': 9823, 'name': 'Sus scrofa', 'ann... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491847752', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491847752', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '2777', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '12149', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+12149', 'database': 'Ca... | 669.36 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(1)Hex(1)dHex(1) % 529.200669675 | freeEnd--?D-Gal(--2a1L-Fuc,p)--3a1D-GalNAc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G15817TT', 'relationship': 'ancestor'};{'related_accession': 'G25422KS', 'relationship': 'ancestor'};{'related_accession': 'G30886AB', 'relationship': 'ancestor'};{'related_accession': 'G31112LT', 'relationship': 'ancestor'};{'related_accession': 'G34611YE', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00092/snfg.svg | ./torsion_data/GS00092_torsion_data.txt | {'Cluster 0': {'count': 29307, '3_2_phi_mean': -76.89, '3_2_psi_mean': 17.38, '4_2_phi_mean': -76.99, '4_2_psi_mean': 109.77, '5_4_phi_mean': -76.2, '5_4_psi_mean': -125.03, '6_5_phi_mean': 74.51, '6_5_psi_mean': -38.56, '9_5_phi_mean': 71.68, '9_5_psi_mean': 119.28, '7_6_phi_mean': 72.08, '7_6_psi_mean': -41.03, '8_6_... | G24990UB | GS00092 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DManpa1-6[DManpa1-3]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DManpa1-6[DManpa1-3]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-4-4-7/a4-b1_a6-k1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h3-i1_h6-j1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:a-dman-HEX-1:5,14b:a-dman-HEX-1:5,15b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H](O)[C@H](O[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H]4O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C@H](O... | null | 2,036.72 | {'motif': 'G00028MO', 'motif_label': 'N-Glycan high mannose'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Man(a1-3);Man(a1-6);Neu5Ac(a2-6);Fuc(a1-6) | {'Man': 5, 'GlcNAc': 3, 'Neu5Ac': 1, 'Gal': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 3, 'Neu5Ac': 1, 'dHex': 1} | 37 | 36 | 58 | 13.964474 | {'Cluster 0': 36.63, 'Cluster 1': 26.6, 'Cluster 2': 18.22, 'Cluster 3': 14.82, 'Cluster 4': 3.73} | {'Cluster 0': 14.686, 'Cluster 1': 14.0261, 'Cluster 2': 12.7112, 'Cluster 3': 7.3405, 'Cluster 4': 7.198, 'Cluster 5': 6.3219, 'Cluster 6': 5.002, 'Cluster 7': 2.8922, 'Cluster 8': 2.8847, 'Cluster 9': 2.6647, 'Cluster 10': 2.2348, 'Cluster 11': 1.9786, 'Cluster 12': 1.8836, 'Cluster 13': 1.8461, 'Cluster 14': 1.6011,... | {'2': 0.3686987824797904, '3': 0.3174851057191358, '4': 0.3347264169714919, '5': 0.35284443981351227, '6': 0.3204522370096633, '7': 0.3152866105895776, '8': 0.28449293323605646} | {'0': [5, 8, 10, 14, 16, 23, 28, 30], '1': [2, 3, 9, 11, 15, 19, 20, 24, 25], '2': [0, 17, 18, 22, 27], '3': [4, 6, 13, 21, 26, 29], '4': [1, 7, 12]} | {'explained_variance_ratio': [0.18070856177211417, 0.11787342395584831, 0.06573507885252369, 0.05656514244303757, 0.04729079410089674, 0.039271274612262014, 0.03364771581521483, 0.024852946963565718, 0.019822999534494016, 0.018137563391575684], 'cumulative_variance': [0.18070856177211417, 0.29858198572796246, 0.3643170... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DManpa1-6[DManpa1-3]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G64125DR | WURCS=2.0/7,11,10/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-4-4-7/a4-b1_a6-k1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h3-i1_h6-j1 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DManpa1-6[DManpa1-3]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G93107BF | WURCS=2.0/6,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-3-3-6/a4-b1_a6-k1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h3-i1_h6-j1 | null | null | Fucosylated N-Glycan;Hybrid N-Glycan;N-Glycan | {'MAN9-NAG10': {'2': {'phi': -92.04, 'psi': -75.13, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -82.69, 'psi': -61.18, 'strain': 0.34, 'linkage': '1-2'}, '4': {'phi': -83.64, 'psi': -81.09, 'strain': 0.373, 'linkage': '1-2'}, '5': {'phi': -71.29, 'psi': -68.56, 'strain': 0.515, 'linkage': '1-2'}, '6': {'phi': -100... | {'MAN9-NAG10': {'2': {'phi': -92.04, 'psi': -75.13, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -82.68, 'psi': -61.11, 'strain': 0.34, 'linkage': '1-2'}, '4': {'phi': -83.62, 'psi': -81.07, 'strain': 0.373, 'linkage': '1-2'}, '5': {'phi': -71.34, 'psi': -68.52, 'strain': 0.515, 'linkage': '1-2'}, '6': {'phi': -100... | {'MAN9-NAG10': {'2': {'phi': -92.04, 'psi': -75.13, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -82.69, 'psi': -61.18, 'strain': 0.34, 'linkage': '1-2'}, '4': {'phi': -83.64, 'psi': -81.09, 'strain': 0.373, 'linkage': '1-2'}, '5': {'phi': -71.29, 'psi': -68.56, 'strain': 0.515, 'linkage': '1-2'}, '6': {'phi': -100... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00093/snfg.svg | ./torsion_data/GS00093_torsion_data.txt | {'Cluster 0': {'count': 12205, '3_2_phi_mean': -72.7, '3_2_psi_mean': -98.96, '4_3_phi_mean': -73.14, '4_3_psi_mean': 139.6, '3_2_phi_std': 7.32, '3_2_psi_std': 7.76, '4_3_phi_std': 7.96, '4_3_psi_std': 7.66}, 'Cluster 1': {'count': 9190, '3_2_phi_mean': -65.62, '3_2_psi_mean': -113.41, '4_3_phi_mean': -70.49, '4_3_psi... | G96057TO | GS00093 | LFucpa1-2DGalpb1-3DGalpNAca1-OH | LFucpa1-2DGalpb1-3DGalpNAc | Fuc(a1-2)Gal(b1-3)GalNAc | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-D-GalNAc | WURCS=2.0/3,3,2/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3/a3-b1_b2-c1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(2+1)4d, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@@H](O)[C@H]1CO | null | 529.2 | {'motif': 'G00032MO', 'motif_label': 'O-Glycan core 1 fuzzy'} | Fuc(a1-2) | {'Fuc': 1, 'Gal': 1, 'GalNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'dHex': 1} | 7 | 10 | 15 | 10.173824 | {'Cluster 0': 40.68, 'Cluster 1': 30.63, 'Cluster 2': 19.88, 'Cluster 3': 5.94, 'Cluster 4': 2.86} | {'Cluster 0': 41.6758, 'Cluster 1': 31.9335, 'Cluster 2': 12.1221, 'Cluster 3': 7.3759, 'Cluster 4': 4.4996, 'Cluster 5': 0.8732, 'Cluster 6': 0.6033, 'Cluster 7': 0.22, 'Cluster 8': 0.1733, 'Cluster 9': 0.1667, 'Cluster 10': 0.16, 'Cluster 11': 0.0967, 'Cluster 12': 0.0633, 'Cluster 13': 0.0367} | {'2': 0.3392923101558671, '3': 0.3482582666896626, '4': 0.2881609509323264, '5': 0.21417270514241674, '6': 0.2121601226245672, '7': 0.20771805803113788, '8': 0.20221247430891523} | {'0': [2, 10, 11], '1': [0], '2': [1, 4, 7, 8, 9], '3': [3, 13], '4': [5, 6, 12]} | {'explained_variance_ratio': [0.15995558196340653, 0.09718237720994294, 0.06027708469426515, 0.05806243003905366, 0.04454723294917057, 0.039654950581863774, 0.027311978747239358, 0.02626770128328748, 0.025078986178639975, 0.023689056667333685], 'cumulative_variance': [0.15995558196340653, 0.2571379591733495, 0.31741504... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-3DGalpNAca1-OH | Fuc(a1-2)Gal(b1-3)GalNAc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-α-D-GalpNAc-(1→ | G94435QH | WURCS=2.0/3,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3/a3-b1_b2-c1 | LFucpa1-2DGalpb1-3DGalpNAcb1-OH | Fuc(a1-2)Gal(b1-3)GalNAc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GalpNAc-(1→ | G35778AN | WURCS=2.0/3,3,2/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3/a3-b1_b2-c1 | null | null | O-Glycan | {'GAL3-FUC4': {'2': {'phi': -66.35, 'psi': 134.65, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -79.79, 'psi': 133.33, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -65.22, 'psi': 133.78, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -76.09, 'psi': 143.29, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -100... | {'GAL3-FUC4': {'2': {'phi': -66.35, 'psi': 134.65, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -79.85, 'psi': 133.35, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -65.16, 'psi': 133.74, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -76.13, 'psi': 143.29, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -100... | {'GAL3-FUC4': {'2': {'phi': -66.35, 'psi': 134.65, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -79.79, 'psi': 133.33, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -65.22, 'psi': 133.78, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -76.09, 'psi': 143.29, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -100... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G96057TO'}]} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00095/snfg.svg | ./torsion_data/GS00095_torsion_data.txt | {'Cluster 0': {'count': 10026, '3_2_phi_mean': -75.11, '3_2_psi_mean': 116.62, '4_3_phi_mean': -78.46, '4_3_psi_mean': 91.13, '5_4_phi_mean': -67.67, '5_4_psi_mean': -99.03, '6_4_phi_mean': -66.0, '6_4_psi_mean': 132.6, '7_6_phi_mean': 71.41, '7_6_psi_mean': 64.57, '8_6_phi_mean': -67.22, '8_6_psi_mean': 138.68, '3_2_p... | G36264SN | GS00095 | LFucpa1-2[DGalpNAca1-3]DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | LFucpa1-2[DGalpNAca1-3]DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcp | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/5,7,6/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3-2-4-5-4/a4-b1_b3-c1_c3-d1_c4-g1_d2-e1_d3-f1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-lgal-HEX-1:5|6:d,7b:a-dgal-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:5o(2+1)6d,6:5o(3+1)7d,7:7d(2+1)8n,8:3o(4+1)9d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5NC(C)=O)[C@H]4O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO | null | 1,202.44 | {'motif': 'G00294TN', 'motif_label': 'Blood group H (type 1)'};{'motif': 'G97501MA', 'motif_label': 'Blood group A (type 1)'};{'motif': 'G97501MA', 'motif_label': 'A-Leb'} | Fuc(a1-2);GalNAc(a1-3);Fuc(a1-4) | {'Fuc': 2, 'Gal': 2, 'GalNAc': 1, 'GlcNAc': 1, 'Glc': 1} | {'Hex': 3, 'HexNAc': 2, 'dHex': 2} | 19 | 21 | 34 | 11.924862 | {'Cluster 0': 33.42, 'Cluster 1': 22.86, 'Cluster 2': 16.9, 'Cluster 3': 14.35, 'Cluster 4': 12.47} | {'Cluster 0': 41.6892, 'Cluster 1': 13.4353, 'Cluster 2': 10.069, 'Cluster 3': 7.1926, 'Cluster 4': 6.9826, 'Cluster 5': 4.3062, 'Cluster 6': 3.4097, 'Cluster 7': 3.2297, 'Cluster 8': 2.2598, 'Cluster 9': 2.1931, 'Cluster 10': 1.7465, 'Cluster 11': 1.5632, 'Cluster 12': 0.7133, 'Cluster 13': 0.3666, 'Cluster 14': 0.336... | {'2': 0.29167436248004486, '3': 0.19555771334066463, '4': 0.17149813969544933, '5': 0.2374021883627543, '6': 0.2688656635461227, '7': 0.27974296836202994, '8': 0.270421213407799} | {'0': [5, 14], '1': [1, 3, 9, 11, 13, 15, 17, 19], '2': [10, 12], '3': [0, 6, 8, 18], '4': [2, 4, 7, 16]} | {'explained_variance_ratio': [0.12066633674184388, 0.08800313371985646, 0.06304070688413545, 0.05669860903889556, 0.04473780441211464, 0.038065912752855285, 0.03510095410348882, 0.03151250734538849, 0.02712957004864352, 0.0256213776829066], 'cumulative_variance': [0.12066633674184388, 0.20866947046170034, 0.27171017734... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2[DGalpNAca1-3]DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(a1- | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G91732YZ | WURCS=2.0/5,7,6/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3-2-4-5-4/a4-b1_b3-c1_c3-d1_c4-g1_d2-e1_d3-f1 | LFucpa1-2[DGalpNAca1-3]DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcpb1-OH | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(b1- | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G71485PH | WURCS=2.0/5,7,6/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3-2-4-5-4/a4-b1_b3-c1_c3-d1_c4-g1_d2-e1_d3-f1 | null | null | null | {'GAL6-FUC8': {'2': {'phi': -63.33, 'psi': 138.46, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -70.08, 'psi': 139.5, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -66.06, 'psi': 139.39, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -70.69, 'psi': 141.92, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -67.4... | {'GAL6-FUC8': {'2': {'phi': -63.33, 'psi': 138.46, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -70.02, 'psi': 139.5, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -65.99, 'psi': 139.32, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -70.77, 'psi': 141.96, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -67.4... | {'GAL6-FUC8': {'2': {'phi': -63.33, 'psi': 138.46, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -70.08, 'psi': 139.5, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -66.06, 'psi': 139.39, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -70.69, 'psi': 141.92, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -67.4... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G36264SN'}]} | 7 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G36264SN', 'url': 'https://glycosmos.org/glycans/show/G36264SN'}, {'database': 'Subsumption', 'id': 'G71485PH', 'url': 'https://www.glygen.org/glycan/G71485PH'}], 'common_name': 'Human', 'glygen_name': '... | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G36264SN', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G36264... | {'id': '491849772', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491849772', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1271', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '13823', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+13823', 'database': 'Ca... | 1,496.77 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 281 | Saccharide | HexNAc(2)Hex(3)dHex(2) % 1202.44359815 | freeEnd--?D-Glc--4b1D-Gal,p--3b1D-GlcNAc,p(--3b1D-Gal,p(--2a1L-Fuc,p)--3a1D-GalNAc,p)--4a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000020', 'name': 'Lewis a', 'synonym': 'Le^a; Lea', 'keywords': 'Lewis a'};{'id': 'GGM.000021', 'name': 'Lewis b', 'synonym': 'Le^b; Leb', 'keywords': 'Lewis b'};{'id': 'GGM.000042', 'name': 'Blo... | {'related_accession': 'G15082FI', 'relationship': 'ancestor'};{'related_accession': 'G21726WW', 'relationship': 'ancestor'};{'related_accession': 'G46910OC', 'relationship': 'ancestor'};{'related_accession': 'G84244ND', 'relationship': 'ancestor'};{'related_accession': 'G21726WW', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00096/snfg.svg | ./torsion_data/GS00096_torsion_data.txt | {'Cluster 0': {'count': 16303, '3_2_phi_mean': -73.3, '3_2_psi_mean': 116.16, '4_3_phi_mean': -81.01, '4_3_psi_mean': -68.74, '6_3_phi_mean': -79.44, '6_3_psi_mean': 108.64, '5_4_phi_mean': -75.15, '5_4_psi_mean': -116.73, '7_6_phi_mean': -68.87, '7_6_psi_mean': -100.74, '8_6_phi_mean': -69.94, '8_6_psi_mean': 133.53, ... | G10377CG | GS00096 | DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3[DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcpa1-OH | DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3[DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcp | Neu5Ac(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)[Gal(b1-4)GlcNAc(b1-6)]Gal(b1-4)Glc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/5,8,7/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-5-3-2/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d3-e2_g4-h1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,7s:n-acetyl,8b:a-lgal-HEX-1:5|6:d,9b:b-dglc-HEX-1:5,10s:n-acetyl,11b:b-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:5o(3+2)6d,6:6d(5+1)7n,7:3o(4+1)8d,8:2o(6+1)9d,9:9d(2+1)1... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@]5(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O... | null | 1,509.53 | {'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00053MO', 'motif_label': 'Slea'};{'motif': 'G00053MO', 'motif_label': 'Sialyl Lewis a'};{'motif': 'G00053MO', 'motif_label': 'CA19-9 antigen'} | Gal(b1-4);Neu5Ac(a2-3);Fuc(a1-4) | {'Gal': 3, 'GlcNAc': 2, 'Neu5Ac': 1, 'Fuc': 1, 'Glc': 1} | {'Hex': 4, 'HexNAc': 2, 'Neu5Ac': 1, 'dHex': 1} | 27 | 27 | 43 | 12.424702 | {'Cluster 0': 27.17, 'Cluster 1': 24.03, 'Cluster 2': 23.13, 'Cluster 3': 16.14, 'Cluster 4': 9.53} | {'Cluster 0': 24.2492, 'Cluster 1': 23.9709, 'Cluster 2': 12.8754, 'Cluster 3': 8.4208, 'Cluster 4': 3.8996, 'Cluster 5': 3.7096, 'Cluster 6': 2.8197, 'Cluster 7': 2.5381, 'Cluster 8': 2.4031, 'Cluster 9': 2.0881, 'Cluster 10': 1.8398, 'Cluster 11': 1.8165, 'Cluster 12': 1.2632, 'Cluster 13': 1.2282, 'Cluster 14': 1.09... | {'2': 0.5731708210781278, '3': 0.35237968299606637, '4': 0.33445310962108743, '5': 0.3434556621904273, '6': 0.32518182416382885, '7': 0.29765239704923224, '8': 0.2948588860208111} | {'0': [2, 6, 19], '1': [8, 17], '2': [0, 4, 11], '3': [1, 3, 5, 7, 9, 10, 13, 14, 15, 18, 20, 21, 22], '4': [12, 16]} | {'explained_variance_ratio': [0.27195135607176696, 0.1422603305631152, 0.05257421597419728, 0.046701966696824006, 0.03633611893065017, 0.034001378429441134, 0.028087109749307913, 0.023095367752601962, 0.0158501630908221, 0.014734544960663258], 'cumulative_variance': [0.27195135607176696, 0.41421168663488217, 0.46678590... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3[DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcpa1-OH | Neu5Ac(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)[Gal(b1-4)GlcNAc(b1-6)]Gal(b1-4)Glc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G37305PC | WURCS=2.0/5,8,7/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-5-3-2/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d3-e2_g4-h1 | DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3[DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcpb1-OH | Neu5Ac(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)[Gal(b1-4)GlcNAc(b1-6)]Gal(b1-4)Glc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G40104OM | WURCS=2.0/5,8,7/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-5-3-2/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d3-e2_g4-h1 | null | null | null | {'GAL3-NAG6': {'2': {'phi': -95.33, 'psi': 176.16, 'strain': 2.968, 'linkage': '1-3'}, '3': {'phi': -78.58, 'psi': -161.83, 'strain': 1.129, 'linkage': '1-3'}, '4': {'phi': -75.6, 'psi': -144.71, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -70.94, 'psi': -112.4, 'strain': 0.704, 'linkage': '1-3'}, '6': {'phi': -91... | {'GAL3-NAG6': {'2': {'phi': -95.33, 'psi': 176.16, 'strain': 2.968, 'linkage': '1-3'}, '3': {'phi': -78.51, 'psi': -161.87, 'strain': 1.129, 'linkage': '1-3'}, '4': {'phi': -75.71, 'psi': -144.71, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -70.99, 'psi': -112.4, 'strain': 0.704, 'linkage': '1-3'}, '6': {'phi': -9... | {'GAL3-NAG6': {'2': {'phi': -95.33, 'psi': 176.16, 'strain': 2.968, 'linkage': '1-3'}, '3': {'phi': -78.58, 'psi': -161.83, 'strain': 1.129, 'linkage': '1-3'}, '4': {'phi': -75.6, 'psi': -144.71, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -70.94, 'psi': -112.4, 'strain': 0.704, 'linkage': '1-3'}, '6': {'phi': -91... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G10377CG'}]} | 8 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G10377CG', 'url': 'https://glycosmos.org/glycans/show/G10377CG'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G10377CG', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G10377... | {'id': '491841505', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491841505', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '4123', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '5201', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+5201', 'database': 'Carb... | 1,887.96 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 246 | Saccharide | HexNAc(2)Hex(4)dHex(1)NeuAc(1) % 1509.53392942 | freeEnd--?D-Glc--4b1D-Gal,p(--3b1D-GlcNAc,p(--3b1D-Gal,p--3a2D-NeuAc,p)--4a1L-Fuc,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000020', 'name': 'Lewis a', 'synonym': 'Le^a; Le... | {'related_accession': 'G04857UT', 'relationship': 'ancestor'};{'related_accession': 'G36011HK', 'relationship': 'ancestor'};{'related_accession': 'G39916IH', 'relationship': 'ancestor'};{'related_accession': 'G40309AV', 'relationship': 'ancestor'};{'related_accession': 'G87346MV', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00097/snfg.svg | ./torsion_data/GS00097_torsion_data.txt | {'Cluster 0': {'count': 7664, '3_2_phi_mean': -79.4, '3_2_psi_mean': -17.21, '6_2_phi_mean': -78.27, '6_2_psi_mean': -134.93, '4_3_phi_mean': -74.07, '4_3_psi_mean': -118.87, '7_6_phi_mean': -72.64, '7_6_psi_mean': -114.6, '8_7_phi_mean': -71.54, '8_7_psi_mean': 141.82, '3_2_phi_std': 17.9, '3_2_psi_std': 145.91, '6_2_... | G75500ME | GS00097 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[LFucpa1-2DGalpb1-4DGlcpNAcb1-3]DGalpNAca1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[LFucpa1-2DGalpb1-4DGlcpNAcb1-3]DGalpNAc | Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)[Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)]GalNAc | α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/5,7,6/[u2112h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-3-5/a3-b1_a6-e1_b4-c1_c2-d1_e4-f1_f3-g2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-lgal-HEX-1:5|6:d,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(2+1)6d,6:1o(6+1)7d,7:7d(2+1)8n,8:7o(4+1)9d,9:9o(3+2)10d,10:... | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)[C@H]3O)[C@H](O)[C@H]2... | null | 1,388.51 | {'motif': 'G00065MO', 'motif_label': 'Polysialic acid'};{'motif': 'G00038MO', 'motif_label': 'O-Glycan core 4 fuzzy'} | Fuc(a1-2);Neu5Ac(a2-3) | {'Gal': 2, 'GlcNAc': 2, 'Fuc': 1, 'Neu5Ac': 1, 'GalNAc': 1} | {'Hex': 2, 'HexNAc': 3, 'Neu5Ac': 1, 'dHex': 1} | 25 | 24 | 38 | 12.955055 | {'Cluster 0': 25.54, 'Cluster 1': 23.64, 'Cluster 2': 22.11, 'Cluster 3': 15.55, 'Cluster 4': 13.16} | {'Cluster 0': 21.4645, 'Cluster 1': 13.4887, 'Cluster 2': 10.0623, 'Cluster 3': 8.6758, 'Cluster 4': 7.9225, 'Cluster 5': 6.7627, 'Cluster 6': 4.7895, 'Cluster 7': 4.5095, 'Cluster 8': 4.1229, 'Cluster 9': 3.7263, 'Cluster 10': 2.7597, 'Cluster 11': 2.7131, 'Cluster 12': 2.5897, 'Cluster 13': 2.1964, 'Cluster 14': 1.34... | {'2': 0.40000075828930587, '3': 0.36450101076516034, '4': 0.30997132719696713, '5': 0.2667294511325624, '6': 0.267451098393495, '7': 0.2544962897898895, '8': 0.2609943675396125} | {'0': [0, 19, 22], '1': [1, 3, 5, 7, 10, 12, 14, 15, 16, 17, 21, 23, 24], '2': [4, 8, 9, 13], '3': [2, 18], '4': [6, 11, 20]} | {'explained_variance_ratio': [0.27467443159622107, 0.08518055830939296, 0.057903292805094604, 0.05211594587481554, 0.039796919170565805, 0.03250144462583811, 0.02659380743722637, 0.021157243749298456, 0.01725263955603301, 0.017014841972727346], 'cumulative_variance': [0.27467443159622107, 0.35985498990561404, 0.4177582... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[LFucpa1-2DGalpb1-4DGlcpNAcb1-3]DGalpNAca1-OH | Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)[Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)]GalNAc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G60687DB | WURCS=2.0/5,7,6/[a2112h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-3-5/a3-b1_a6-e1_b4-c1_c2-d1_e4-f1_f3-g2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[LFucpa1-2DGalpb1-4DGlcpNAcb1-3]DGalpNAcb1-OH | Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)[Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)]GalNAc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G20169US | WURCS=2.0/5,7,6/[a2112h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-3-5/a3-b1_a6-e1_b4-c1_c2-d1_e4-f1_f3-g2 | null | null | null | {'GAL7-FUC8': {'2': {'phi': -72.05, 'psi': 142.03, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -62.13, 'psi': 144.0, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -66.95, 'psi': 140.96, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -66.76, 'psi': 145.13, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -71.2... | {'GAL7-FUC8': {'2': {'phi': -72.05, 'psi': 142.03, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -62.2, 'psi': 143.98, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -67.0, 'psi': 140.99, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -66.82, 'psi': 145.12, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -71.27... | {'GAL7-FUC8': {'2': {'phi': -72.05, 'psi': 142.03, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -62.13, 'psi': 144.0, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -66.95, 'psi': 140.96, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -66.76, 'psi': 145.13, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -71.2... | null | 7 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G60687DB', 'url': 'https://www.glygen.org/glycan/G60687DB'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 4'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G75500ME', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491962024', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491962024', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G75500ME', 'url': 'https://glytoucan.org/Structures/Glycans/G75500ME', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G75500ME', 'url': 'https://sandbox.... | 1,724.88 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 281 | Saccharide | HexNAc(3)Hex(2)dHex(1)NeuAc(1) % 1388.50765502 | freeEnd--?D-GalNAc(--3b1D-GlcNAc,p--4b1D-Gal,p--2a1L-Fuc,p)--6b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000036', 'name': 'Blood group H (type... | {'related_accession': 'G30090XJ', 'relationship': 'ancestor'};{'related_accession': 'G42208HH', 'relationship': 'ancestor'};{'related_accession': 'G58590EJ', 'relationship': 'ancestor'};{'related_accession': 'G61887JK', 'relationship': 'ancestor'};{'related_accession': 'G84104VL', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00098/snfg.svg | ./torsion_data/GS00098_torsion_data.txt | {'Cluster 0': {'count': 9732, '3_2_phi_mean': -78.04, '3_2_psi_mean': 31.6, '4_2_phi_mean': -76.92, '4_2_psi_mean': -125.48, '5_4_phi_mean': -79.01, '5_4_psi_mean': -135.62, '6_5_phi_mean': 65.4, '6_5_psi_mean': 122.62, '17_5_phi_mean': 64.69, '17_5_psi_mean': 95.03, '7_6_phi_mean': -60.37, '7_6_psi_mean': 74.86, '15_6... | G23546HG | GS00098 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3[DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3[DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-4)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-F... | WURCS=2.0/7,21,20/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-2-5-6-4-2-5-2-5-2-5-2-5-2-5-7/a4-b1_a6-u1_b4-c1_c3-d1_c6-j1_d2-e1_d4-g1_e4-f1_g4-h1_h3-i2_j2-k1_j6-m1_k4-l1_m4-n1_n3-o1_o4-p1_p3-q1_q4-r1_r3-s1_s4-t1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dgal-HEX-1:5,13b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,14s:n-acetyl,15b:a-dman-HEX-1:5,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:b-dgal-HEX-1:5... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@@H]7O[C@H](CO)[C@@H](O[C@@H]8O[C@H](CO)[C@H](O)[C@H](O[C@@H]9O[C@H](CO)[C@@H](O[C@@H]%10O[C@H](CO)[C@H](O)[C@H](O[C@@H]%11O[C@H](CO)[C@@H](O[C@@H]%12O[C@H](CO)[C@H](O)[... | null | 3,903.41 | null | Gal(b1-4);Fuc(a1-6);Neu5Ac(a2-3) | {'GlcNAc': 9, 'Gal': 7, 'Man': 3, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 10, 'HexNAc': 9, 'Neu5Ac': 1, 'dHex': 1} | null | null | null | 14.458071 | {'Cluster 0': 24.33, 'Cluster 1': 23.52, 'Cluster 2': 22.54, 'Cluster 3': 21.16, 'Cluster 4': 8.44} | {'Cluster 0': 18.3332, 'Cluster 1': 15.9884, 'Cluster 2': 7.7667, 'Cluster 3': 7.5717, 'Cluster 4': 5.6244, 'Cluster 5': 5.1195, 'Cluster 6': 4.1571, 'Cluster 7': 3.6571, 'Cluster 8': 3.2322, 'Cluster 9': 3.1522, 'Cluster 10': 2.9422, 'Cluster 11': 2.8147, 'Cluster 12': 2.7397, 'Cluster 13': 2.3473, 'Cluster 14': 1.987... | {'2': 0.39148863543226214, '3': 0.5230400541391156, '4': 0.4513271095864907, '5': 0.45499657660755116, '6': 0.41919899529372, '7': 0.40005149176195454, '8': 0.3735411215512791} | {'0': [0, 14, 17, 22], '1': [4, 24], '2': [2, 3, 12, 23, 26, 27, 30], '3': [6, 7, 8, 9, 10, 13, 15, 16, 18, 19, 25, 28, 29, 31, 33], '4': [1, 5, 11, 20, 21, 32]} | {'explained_variance_ratio': [0.23472947560492102, 0.1735707373586693, 0.0678135946561867, 0.04718660622149486, 0.041737712609667715, 0.02428361840588964, 0.020588833769387978, 0.020160447960326087, 0.017789305315286472, 0.01717828645419047], 'cumulative_variance': [0.23472947560492102, 0.4083002129635903, 0.4761138076... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3[DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-4)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-F... | G99684PD | WURCS=2.0/7,21,20/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-2-5-6-4-2-5-2-5-2-5-2-5-2-5-7/a4-b1_a6-u1_b4-c1_c3-d1_c6-j1_d2-e1_d4-g1_e4-f1_g4-h1_h3-i2_j2-k1_j6-m1_k4-l1_m4-n1_n3-o1_o4-p1_p3-q1_q4-r1_r3-s1_s4-t1 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3[DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-4)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-F... | G73563MZ | WURCS=2.0/6,21,20/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-1-4-5-3-1-4-1-4-1-4-1-4-1-4-6/a4-b1_a6-u1_b4-c1_c3-d1_c6-j1_d2-e1_d4-g1_e4-f1_g4-h1_h3-i2_j2-k1_j6-m1_k4-l1_m4-n1_n3-o1_o4-p1_p3-q1_q4-r1_r3-s1_s4-t1 | null | null | Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG15': {'2': {'phi': -73.7, 'psi': -66.68, 'strain': 0.515, 'linkage': '1-2'}, '3': {'phi': -63.24, 'psi': -89.34, 'strain': 0.758, 'linkage': '1-2'}, '4': {'phi': -64.37, 'psi': -90.82, 'strain': 1.237, 'linkage': '1-2'}, '5': {'phi': -95.17, 'psi': 39.39, 'strain': 2.783, 'linkage': '1-2'}, '6': {'phi': -85.0... | {'MAN6-NAG15': {'2': {'phi': -73.7, 'psi': -66.68, 'strain': 0.515, 'linkage': '1-2'}, '3': {'phi': -63.2, 'psi': -89.32, 'strain': 0.758, 'linkage': '1-2'}, '4': {'phi': -64.27, 'psi': -90.85, 'strain': 1.237, 'linkage': '1-2'}, '5': {'phi': -95.15, 'psi': 39.42, 'strain': 2.783, 'linkage': '1-2'}, '6': {'phi': -84.99... | {'MAN6-NAG15': {'2': {'phi': -73.7, 'psi': -66.68, 'strain': 0.515, 'linkage': '1-2'}, '3': {'phi': -63.24, 'psi': -89.34, 'strain': 0.758, 'linkage': '1-2'}, '4': {'phi': -64.37, 'psi': -90.82, 'strain': 1.237, 'linkage': '1-2'}, '5': {'phi': -95.17, 'psi': 39.39, 'strain': 2.783, 'linkage': '1-2'}, '6': {'phi': -85.0... | null | 21 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G23546HG', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': 'G23546HG', 'url': 'https://glytoucan.org/Structures/Glycans/G23546HG', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G23546HG', 'url': 'https://sandbox.glyomics.org/explore.html?G23546HG', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G23546HG', 'url': 'https://gnome.glyom... | 4,828.44 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'no'} | 93 | Saccharide | HexNAc(9)Hex(10)dHex(1)NeuAc(1) % 3903.40647865 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcNAc,p--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000004', 'name': 'i ant... | {'related_accession': 'G21169OD', 'relationship': 'ancestor'};{'related_accession': 'G50148ER', 'relationship': 'ancestor'};{'related_accession': 'G73563MZ', 'relationship': 'descendant'};{'related_accession': 'G99684PD', 'relationship': 'descendant'};{'related_accession': 'G73563MZ', 'relationship': 'fullydetermined'}... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00099/snfg.svg | ./torsion_data/GS00099_torsion_data.txt | {'Cluster 0': {'count': 21663, '3_2_phi_mean': -76.19, '3_2_psi_mean': 111.16, '4_3_phi_mean': -77.17, '4_3_psi_mean': -43.02, '9_3_phi_mean': -80.11, '9_3_psi_mean': 105.72, '5_4_phi_mean': -74.31, '5_4_psi_mean': -114.11, '6_5_phi_mean': -79.95, '6_5_psi_mean': 101.2, '7_6_phi_mean': -68.34, '7_6_psi_mean': -107.98, ... | G78929WE | GS00099 | DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcpa1-OH | DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcp | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)]Gal(b1-4)Glc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/5,11,10/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-5-3-2-3-5-2/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d3-e2_g4-h1_h3-i1_i3-j1_i4-k1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,7s:n-acetyl,8b:a-lgal-HEX-1:5|6:d,9b:b-dglc-HEX-1:5,10s:n-acetyl,11b:b-dgal-HEX-1:5,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:a-lgal-HEX-1:5|6:d,15b:b-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H]5NC(C)=O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@@H](C... | null | 2,020.72 | {'motif': 'G00053MO', 'motif_label': 'CA19-9 antigen'};{'motif': 'G00053MO', 'motif_label': 'Sialyl Lewis a'};{'motif': 'G00053MO', 'motif_label': 'Slea'};{'motif': 'G00058MO', 'motif_label': "I' antigen"};{'motif': 'G00058MO', 'motif_label': 'Type 2 LN2'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G0118... | Fuc(a1-3);Gal(b1-4);Neu5Ac(a2-3);Fuc(a1-4) | {'Gal': 4, 'GlcNAc': 3, 'Fuc': 2, 'Neu5Ac': 1, 'Glc': 1} | {'Hex': 5, 'HexNAc': 3, 'Neu5Ac': 1, 'dHex': 2} | 36 | 35 | 57 | 13.529355 | {'Cluster 0': 36.1, 'Cluster 1': 23.7, 'Cluster 2': 17.4, 'Cluster 3': 14.34, 'Cluster 4': 8.45} | {'Cluster 0': 19.4164, 'Cluster 1': 16.5283, 'Cluster 2': 10.0757, 'Cluster 3': 9.8057, 'Cluster 4': 5.1095, 'Cluster 5': 4.3746, 'Cluster 6': 4.2196, 'Cluster 7': 3.3447, 'Cluster 8': 3.133, 'Cluster 9': 3.0264, 'Cluster 10': 2.8331, 'Cluster 11': 2.7864, 'Cluster 12': 2.6014, 'Cluster 13': 2.5964, 'Cluster 14': 2.148... | {'2': 0.44049099310404366, '3': 0.5010183884170534, '4': 0.4030954232830551, '5': 0.3727530682528229, '6': 0.3684509796041409, '7': 0.3778320630065577, '8': 0.3112249934830904} | {'0': [0, 16, 24], '1': [3, 5, 17, 18, 22], '2': [2, 6, 7, 12, 13, 14, 19, 20, 21, 27], '3': [1, 9, 11, 15, 25, 26], '4': [4, 8, 10, 23]} | {'explained_variance_ratio': [0.2765254118874514, 0.1504740610692474, 0.08460607553946865, 0.0323307040429387, 0.0264947855314534, 0.023736196380000588, 0.022913245641852206, 0.020147474215429586, 0.018978420996888054, 0.0165100950038984], 'cumulative_variance': [0.2765254118874514, 0.4269994729566988, 0.51160554849616... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcpa1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)]Gal(b1-4)Glc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G28291VA | WURCS=2.0/5,11,10/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-5-3-2-3-5-2/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d3-e2_g4-h1_h3-i1_i3-j1_i4-k1 | DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcpb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)]Gal(b1-4)Glc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G62776HF | WURCS=2.0/5,11,10/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-5-3-2-3-5-2/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d3-e2_g4-h1_h3-i1_i3-j1_i4-k1 | null | null | null | {'GAL3-NAG9': {'2': {'phi': -93.98, 'psi': -176.42, 'strain': 1.9, 'linkage': '1-3'}, '3': {'phi': -67.46, 'psi': -134.64, 'strain': 0.758, 'linkage': '1-3'}, '4': {'phi': -66.56, 'psi': -93.67, 'strain': 0.094, 'linkage': '1-3'}, '5': {'phi': -82.79, 'psi': -159.64, 'strain': 0.668, 'linkage': '1-3'}, '6': {'phi': -77... | {'GAL3-NAG9': {'2': {'phi': -93.98, 'psi': -176.42, 'strain': 1.9, 'linkage': '1-3'}, '3': {'phi': -67.43, 'psi': -134.67, 'strain': 0.758, 'linkage': '1-3'}, '4': {'phi': -66.48, 'psi': -93.74, 'strain': 0.094, 'linkage': '1-3'}, '5': {'phi': -82.72, 'psi': -159.64, 'strain': 0.668, 'linkage': '1-3'}, '6': {'phi': -77... | {'GAL3-NAG9': {'2': {'phi': -93.98, 'psi': -176.42, 'strain': 1.9, 'linkage': '1-3'}, '3': {'phi': -67.46, 'psi': -134.64, 'strain': 0.758, 'linkage': '1-3'}, '4': {'phi': -66.56, 'psi': -93.67, 'strain': 0.094, 'linkage': '1-3'}, '5': {'phi': -82.79, 'psi': -159.64, 'strain': 0.668, 'linkage': '1-3'}, '6': {'phi': -77... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G78929WE'}]} | 11 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G78929WE', 'url': 'https://glycosmos.org/glycans/show/G78929WE'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G78929WE', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G78929... | {'id': '491863348', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491863348', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '4222', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '18813', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+18813', 'database': 'Ca... | 2,511.27 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 179 | Saccharide | HexNAc(3)Hex(5)dHex(2)NeuAc(1) % 2020.72403439 | freeEnd--?D-Glc--4b1D-Gal,p(--3b1D-GlcNAc,p(--3b1D-Gal,p--3a2D-NeuAc,p)--4a1L-Fuc,p)--6b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type ... | {'related_accession': 'G13891WJ', 'relationship': 'ancestor'};{'related_accession': 'G34155LO', 'relationship': 'ancestor'};{'related_accession': 'G35235RT', 'relationship': 'ancestor'};{'related_accession': 'G92487IZ', 'relationship': 'ancestor'};{'related_accession': 'G97357RI', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00100/snfg.svg | ./torsion_data/GS00100_torsion_data.txt | {'Cluster 0': {'count': 19871, '3_2_phi_mean': -80.33, '3_2_psi_mean': 60.81, '4_2_phi_mean': -76.05, '4_2_psi_mean': -123.46, '5_4_phi_mean': -89.22, '5_4_psi_mean': -122.8, '6_5_phi_mean': 81.17, '6_5_psi_mean': 82.99, '10_5_phi_mean': -63.97, '10_5_psi_mean': -110.08, '11_5_phi_mean': 80.84, '11_5_psi_mean': 106.84,... | G94437IW | GS00100 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-4][DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-4][DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,14,13/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-5-2-4-2-5-6-5/a4-b1_a6-n1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_e3-f1_e4-g1_g2-h1_j2-k1_k3-l1_k4-m1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-lgal-HEX-1:5|6:d,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:a-dman-HEX-1:5,15b:b-dglc-HEX-1:5,16s:n-acetyl,17b:a-lgal-HEX-1:5|6:d,18b:b-dgal-HEX-1:5,1... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H]5NC(C)=O)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H](O[C@H]4O[... | null | 2,427.9 | {'motif': 'G00052MO', 'motif_label': 'Ley'};{'motif': 'G00052MO', 'motif_label': 'Lewis b'};{'motif': 'G00052MO', 'motif_label': 'Leb'};{'motif': 'G00052MO', 'motif_label': 'Blood group H (type 2)'};{'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'} | Fuc(a1-3);Gal(b1-4);Fuc(a1-2);Fuc(a1-6);GlcNAc(b1-4) | {'GlcNAc': 5, 'Fuc': 4, 'Man': 3, 'Gal': 2} | {'Hex': 5, 'HexNAc': 5, 'dHex': 4} | 41 | 40 | 67 | 13.707596 | {'Cluster 0': 49.67, 'Cluster 1': 28.04, 'Cluster 2': 7.86, 'Cluster 3': 7.7, 'Cluster 4': 6.72} | {'Cluster 0': 36.9313, 'Cluster 1': 26.5048, 'Cluster 2': 5.5419, 'Cluster 3': 4.742, 'Cluster 4': 4.742, 'Cluster 5': 3.8171, 'Cluster 6': 2.2823, 'Cluster 7': 1.8648, 'Cluster 8': 1.7848, 'Cluster 9': 1.6898, 'Cluster 10': 1.6173, 'Cluster 11': 1.3849, 'Cluster 12': 1.3649, 'Cluster 13': 1.3549, 'Cluster 14': 1.0174,... | {'2': 0.45521737797234124, '3': 0.5090630105979405, '4': 0.5175049640350012, '5': 0.4223222075394598, '6': 0.3454340485968173, '7': 0.31874680261936894, '8': 0.2805796314436335} | {'0': [0, 7, 15, 16, 25, 26, 27], '1': [11, 19], '2': [8, 23, 28], '3': [2, 5, 12, 14, 18, 22], '4': [1, 3, 4, 6, 9, 10, 13, 17, 20, 21, 24]} | {'explained_variance_ratio': [0.15576266307508704, 0.10983564839401315, 0.09072345411005056, 0.053686776171415485, 0.04347114102745246, 0.03942795228263903, 0.030909890569865577, 0.02601757083630817, 0.021286223377491212, 0.019916927699433856], 'cumulative_variance': [0.15576266307508704, 0.2655983114691002, 0.35632176... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-4][DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G90941ZH | WURCS=2.0/6,14,13/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-5-2-4-2-5-6-5/a4-b1_a6-n1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_e3-f1_e4-g1_g2-h1_j2-k1_k3-l1_k4-m1 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-4][DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G53219PO | WURCS=2.0/5,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-4-1-3-1-4-5-4/a4-b1_a6-n1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_e3-f1_e4-g1_g2-h1_j2-k1_k3-l1_k4-m1 | null | null | Biantennary N-Glycan;Complex N-Glycan;Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG7': {'2': {'phi': -84.29, 'psi': -80.69, 'strain': 0.373, 'linkage': '1-2'}, '3': {'phi': -69.81, 'psi': -65.68, 'strain': 0.982, 'linkage': '1-2'}, '4': {'phi': -70.39, 'psi': -89.99, 'strain': 0.234, 'linkage': '1-2'}, '5': {'phi': -56.66, 'psi': -83.87, 'strain': 1.809, 'linkage': '1-2'}, '6': {'phi': -77.... | {'MAN6-NAG7': {'2': {'phi': -84.29, 'psi': -80.69, 'strain': 0.373, 'linkage': '1-2'}, '3': {'phi': -69.81, 'psi': -65.69, 'strain': 0.982, 'linkage': '1-2'}, '4': {'phi': -70.36, 'psi': -90.04, 'strain': 0.971, 'linkage': '1-2'}, '5': {'phi': -56.71, 'psi': -83.85, 'strain': 1.809, 'linkage': '1-2'}, '6': {'phi': -77.... | {'MAN6-NAG7': {'2': {'phi': -84.29, 'psi': -80.69, 'strain': 0.373, 'linkage': '1-2'}, '3': {'phi': -69.81, 'psi': -65.68, 'strain': 0.982, 'linkage': '1-2'}, '4': {'phi': -70.39, 'psi': -89.99, 'strain': 0.234, 'linkage': '1-2'}, '5': {'phi': -56.66, 'psi': -83.87, 'strain': 1.809, 'linkage': '1-2'}, '6': {'phi': -77.... | null | 14 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Biantennary'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Bisected'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Cor... | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G94437IW', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491970300', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491970300', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G94437IW', 'url': 'https://glytoucan.org/Structures/Glycans/G94437IW', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G94437IW', 'url': 'https://sandbox.... | 2,988.53 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 140 | Saccharide | HexNAc(5)Hex(5)dHex(4) % 2427.90318071 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--2a1L-Fuc,p)--4b1D-GlcNAc,p)--6a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000019', 'name': 'Lewis y', 'synonym': 'Le^y; Ley', 'keywords': 'L... | {'related_accession': 'G01268PO', 'relationship': 'ancestor'};{'related_accession': 'G20527RK', 'relationship': 'ancestor'};{'related_accession': 'G61605LI', 'relationship': 'ancestor'};{'related_accession': 'G89220RZ', 'relationship': 'ancestor'};{'related_accession': 'G61605LI', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00101/snfg.svg | ./torsion_data/GS00101_torsion_data.txt | {} | G07011TA | GS00101 | DNeup5Aca2-9DNeup5Aca2-9DNeup5Aca2-OH | DNeup5Aca2-9DNeup5Aca2-9DNeup5Ac | Neu5Ac(a2-9)Neu5Ac(a2-9)Neu5Ac | α-D-Neup5Ac-(2→9)-α-D-Neup5Ac-(2→9)-D-Neu5Ac | WURCS=2.0/2,3,2/[AUd21122h_5*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-2/a9-b2_b9-c2 | RES,1b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d,2s:n-acetyl,3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,4s:n-acetyl,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-acetyl,LIN,1:1d(5+1)2n,2:1o(9+2)3d,3:3d(5+1)4n,4:3o(9+2)5d,5:5d(5+1)6n, | O1[C@@H]([C@H](O)[C@H](O)CO[C@]2(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)O2)[C@H](NC(C)=O)[C@@H](O)CC1(O)C(=O)O | null | 891.3 | null | Neu5Ac(a2-9) | {'Neu5Ac': 3} | {'Neu5Ac': 3} | 19 | 17 | 25 | 11.243031 | {'Cluster 0': 33.24, 'Cluster 1': 29.86, 'Cluster 2': 18.54, 'Cluster 3': 12.42, 'Cluster 4': 5.94} | {'Cluster 0': 25.7474, 'Cluster 1': 18.4707, 'Cluster 2': 11.9938, 'Cluster 3': 7.8742, 'Cluster 4': 7.5192, 'Cluster 5': 5.8269, 'Cluster 6': 4.592, 'Cluster 7': 3.0672, 'Cluster 8': 2.4273, 'Cluster 9': 2.2098, 'Cluster 10': 1.6698, 'Cluster 11': 1.6473, 'Cluster 12': 1.6123, 'Cluster 13': 1.4574, 'Cluster 14': 1.412... | {'2': 0.3867271146690181, '3': 0.4212452051870729, '4': 0.29972925773211284, '5': 0.28799607209744116, '6': 0.27306760074661873, '7': 0.27713940653523983, '8': 0.2668686035651851} | {'0': [0], '1': [1, 2, 5, 6, 10, 12, 16], '2': [4, 9, 11, 13, 15, 17], '3': [8], '4': [3, 7, 14]} | {'explained_variance_ratio': [0.1922047242665606, 0.10539309599789977, 0.07512571853889957, 0.053890511732254315, 0.039120574634347524, 0.03284386425122641, 0.027674114538932402, 0.020986018519678986, 0.01945434992062546, 0.018551011354045268], 'cumulative_variance': [0.1922047242665606, 0.29759782026446036, 0.37272353... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-9DNeup5Aca2-9DNeup5Aca2-OH | Neu5Ac(a2-9)Neu5Ac(a2-9)Neu5Ac(a2- | α-D-Neup5Ac-(2→9)-α-D-Neup5Ac-(2→9)-α-D-Neup5Ac-(2→ | G61265PY | WURCS=2.0/1,3,2/[Aad21122h-2a_2-6_5*NCC/3=O]/1-1-1/a9-b2_b9-c2 | DNeup5Aca2-9DNeup5Aca2-9DNeup5Acb2-OH | Neu5Ac(a2-9)Neu5Ac(a2-9)Neu5Ac(b2- | α-D-Neup5Ac-(2→9)-α-D-Neup5Ac-(2→9)-β-D-Neup5Ac-(2→ | G44711YZ | WURCS=2.0/2,3,2/[Aad21122h-2b_2-6_5*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-2/a9-b2_b9-c2 | null | null | null | {} | {} | {} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00102/snfg.svg | ./torsion_data/GS00102_torsion_data.txt | {'Cluster 0': {'count': 18218, '3_2_phi_mean': -76.13, '3_2_psi_mean': -47.76, '6_2_phi_mean': -75.87, '6_2_psi_mean': -119.85, '4_3_phi_mean': -73.91, '4_3_psi_mean': -119.0, '3_2_phi_std': 24.69, '3_2_psi_std': 135.43, '6_2_phi_std': 14.47, '6_2_psi_std': 32.81, '4_3_phi_std': 15.63, '4_3_psi_std': 24.66}, 'Cluster 1... | G42089IU | GS00102 | DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DGalpNAca1-OH | DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DGalpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)]GalNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/4,6,5/[u2112h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-3/a3-b1_a6-d1_b3-c2_d4-e1_e3-f2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-acetyl,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:b-dgal-HEX-1:5,9b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,10s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(3+2)4d,4:4d(5+1)5n,5:1o(6+1)6d,6:6d(2+1)7n,7:6o(4+1)8d,8:8o(3+2)9d,9:9d(5+1)10n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)[C@H]3O)[C@H](O)[C@H]2NC(C)=O | null | 1,330.47 | {'motif': 'G00065MO', 'motif_label': 'Polysialic acid'};{'motif': 'G00034MO', 'motif_label': 'O-Glycan core 2 fuzzy'} | Neu5Ac(a2-3) | {'Neu5Ac': 2, 'Gal': 2, 'GlcNAc': 1, 'GalNAc': 1} | {'Hex': 2, 'HexNAc': 2, 'Neu5Ac': 2} | 26 | 24 | 37 | 12.87143 | {'Cluster 0': 30.36, 'Cluster 1': 24.27, 'Cluster 2': 17.44, 'Cluster 3': 15.06, 'Cluster 4': 12.87} | {'Cluster 0': 24.2142, 'Cluster 1': 11.3639, 'Cluster 2': 10.1057, 'Cluster 3': 8.1409, 'Cluster 4': 7.8309, 'Cluster 5': 7.076, 'Cluster 6': 5.0762, 'Cluster 7': 4.6845, 'Cluster 8': 4.2712, 'Cluster 9': 3.308, 'Cluster 10': 3.003, 'Cluster 11': 2.7531, 'Cluster 12': 2.3348, 'Cluster 13': 1.2215, 'Cluster 14': 0.9249,... | {'2': 0.4946875764133186, '3': 0.3068112599014445, '4': 0.28325786285430904, '5': 0.27117039307857543, '6': 0.25039582937123467, '7': 0.243914072292157, '8': 0.22620692259441633} | {'0': [8, 17, 21], '1': [1, 3, 5, 6, 7, 11, 15, 18, 19, 24], '2': [2, 10, 14], '3': [0, 13, 16, 20, 23], '4': [4, 9, 12, 22]} | {'explained_variance_ratio': [0.2953550337291207, 0.07289297791157394, 0.05095616494804588, 0.04756570236140595, 0.04335038641658489, 0.03598309227804363, 0.0344660744663216, 0.022476016856482095, 0.017392299886246743, 0.01651226094221091], 'cumulative_variance': [0.2953550337291207, 0.36824801164069465, 0.419204176588... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DGalpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)]GalNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G60890ZT | WURCS=2.0/4,6,5/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-3/a3-b1_a6-d1_b3-c2_d4-e1_e3-f2 | DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DGalpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)]GalNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G99244AI | WURCS=2.0/4,6,5/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-3/a3-b1_a6-d1_b3-c2_d4-e1_e3-f2 | null | null | null | {'A2G2-GAL6': {'2': {'phi': -88.23, 'psi': -157.81, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -82.28, 'psi': -105.77, 'strain': 0.912, 'linkage': '1-3'}, '4': {'phi': -72.81, 'psi': -140.07, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -87.97, 'psi': -159.91, 'strain': 0.668, 'linkage': '1-3'}, '6': {'phi': ... | {'A2G2-GAL6': {'2': {'phi': -88.23, 'psi': -157.81, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -82.26, 'psi': -105.81, 'strain': 0.912, 'linkage': '1-3'}, '4': {'phi': -72.81, 'psi': -140.07, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -87.94, 'psi': -159.95, 'strain': 0.668, 'linkage': '1-3'}, '6': {'phi': ... | {'A2G2-GAL6': {'2': {'phi': -88.23, 'psi': -157.81, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -82.28, 'psi': -105.77, 'strain': 0.912, 'linkage': '1-3'}, '4': {'phi': -72.81, 'psi': -140.07, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -87.97, 'psi': -159.91, 'strain': 0.668, 'linkage': '1-3'}, '6': {'phi': ... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G42089IU'}]} | 6 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G60890ZT', 'url': 'https://www.glygen.org/glycan/G60890ZT'}, {'database': 'Subsumption', 'id': 'G66489LJ', 'url': 'https://www.glygen.org/glycan/G66489LJ'}], 'common_name': 'Bovine', 'glygen_name'... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 2'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G42089IU', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491851747', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491851747', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '16765', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '2689', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '25679', '... | 1,666.84 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 328 | Saccharide | HexNAc(2)Hex(2)NeuAc(2) % 1330.46579018 | freeEnd--?D-GalNAc(--3b1D-Gal,p--3a2D-NeuAc,p)--6b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G00390GQ', 'relationship': 'ancestor'};{'related_accession': 'G11357FA', 'relationship': 'ancestor'};{'related_accession': 'G13031IW', 'relationship': 'ancestor'};{'related_accession': 'G26392IX', 'relationship': 'ancestor'};{'related_accession': 'G28287CO', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
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