SNFG stringlengths 26 26 | torsion_table stringlengths 39 39 | torsion_analysis stringlengths 2 10.3k | glytoucan stringlengths 8 8 ⌀ | ID stringlengths 7 7 | name stringlengths 10 243 | glycam stringlengths 5 238 | iupac stringlengths 3 236 | iupac_extended stringlengths 5 364 ⌀ | wurcs stringlengths 26 311 ⌀ | glycoct stringlengths 21 1.07k ⌀ | smiles stringlengths 30 1.05k ⌀ | oxford stringclasses 53
values | mass float64 150 4.19k ⌀ | motifs stringclasses 112
values | termini stringlengths 9 68 ⌀ | components stringlengths 10 100 | composition stringlengths 2 60 ⌀ | rot_bonds float64 0 73 ⌀ | hbond_donor float64 3 63 ⌀ | hbond_acceptor float64 5 102 ⌀ | entropy float64 4.68 15.6 | clusters stringlengths 2 100 | coverage_clusters stringlengths 2 929 | silhouette_scores stringlengths 171 182 | coverage_clusters_per_main stringlengths 52 197 | pca_variance stringlengths 478 497 | length float64 0 8 | package stringclasses 2
values | forcefield stringclasses 3
values | temperature float64 300 300 ⌀ | pressure float64 1 1 ⌀ | salt stringclasses 5
values | a_glycam stringlengths 10 243 | a_iupac stringlengths 7 240 | a_iupac_extended stringlengths 12 349 ⌀ | a_glytoucan stringlengths 8 8 ⌀ | a_wurcs stringlengths 33 318 ⌀ | b_glycam stringlengths 10 243 | b_iupac stringlengths 7 240 | b_iupac_extended stringlengths 12 371 ⌀ | b_glytoucan stringlengths 8 8 ⌀ | b_wurcs stringlengths 33 293 ⌀ | common_names stringclasses 66
values | description float64 | keywords stringclasses 11
values | calculated_torsion stringlengths 2 15.5k | a_calculated_torsion stringlengths 2 14.2k | b_calculated_torsion stringlengths 2 14.2k | glycosmos stringlengths 141 4.9k ⌀ | number_monosaccharides float64 1 21 ⌀ | species stringlengths 269 4.28k ⌀ | classification stringclasses 53
values | enzyme stringlengths 1.64k 35.6k ⌀ | crossref stringlengths 322 13.7k ⌀ | mass_pme float64 206 5.1k ⌀ | tool_support stringclasses 12
values | missing_score float64 93 1.97k ⌀ | glycan_type stringclasses 2
values | byonic stringlengths 20 54 ⌀ | gwb stringlengths 36 314 ⌀ | motifs.1 stringclasses 102
values | subsumption stringlengths 383 2.39k ⌀ | section_stats stringclasses 8
values | history stringclasses 9
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
./raw_dataGS00209/snfg.svg | ./torsion_data/GS00209_torsion_data.txt | {'Cluster 0': {'count': 11760, '3_2_phi_mean': -80.41, '3_2_psi_mean': 100.16, '4_3_phi_mean': -68.86, '4_3_psi_mean': 112.35, '3_2_phi_std': 11.75, '3_2_psi_std': 13.05, '4_3_phi_std': 8.46, '4_3_psi_std': 14.2}, 'Cluster 1': {'count': 9556, '3_2_phi_mean': -76.91, '3_2_psi_mean': 112.21, '4_3_phi_mean': -73.61, '4_3_... | G77276AJ | GS00209 | DGalpNAcb1-3DGlcpNAcb1-4DManpa1-OH | DGalpNAcb1-3DGlcpNAcb1-4DManp | GalNAc(b1-3)GlcNAc(b1-4)Man | β-D-GalpNAc-(1→3)-β-D-GlcpNAc-(1→4)-D-Man | WURCS=2.0/3,3,2/[u1122h][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O]/1-2-3/a4-b1_b3-c1 | RES,1b:b-dman-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:b-dgal-HEX-1:5,5s:n-acetyl,LIN,1:1o(4+1)2d,2:2d(2+1)3n,3:2o(3+1)4d,4:4d(2+1)5n, | O1C(O)[C@@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3NC(C)=O)[C@H]2NC(C)=O)[C@H]1CO | null | 586.22 | null | GalNAc(b1-3) | {'GalNAc': 1, 'GlcNAc': 1, 'Man': 1} | {'Hex': 1, 'HexNAc': 2} | 1 | 5 | 6 | 9.471131 | {'Cluster 0': 39.2, 'Cluster 1': 31.85, 'Cluster 2': 25.17, 'Cluster 3': 2.46, 'Cluster 4': 1.32} | {'Cluster 0': 44.8555, 'Cluster 1': 33.0367, 'Cluster 2': 10.5423, 'Cluster 3': 8.7625, 'Cluster 4': 1.4865, 'Cluster 5': 0.6266, 'Cluster 6': 0.3066, 'Cluster 7': 0.1667, 'Cluster 8': 0.0933, 'Cluster 9': 0.09, 'Cluster 10': 0.0167, 'Cluster 11': 0.0167} | {'2': 0.8377595097791624, '3': 0.5943974890149889, '4': 0.32541950962542343, '5': 0.2530650399455627, '6': 0.2620435389269873, '7': 0.26346047502344483, '8': 0.24584066742614108} | {'0': [11], '1': [1, 2, 3, 7, 8, 9, 10], '2': [0, 4], '3': [6], '4': [5]} | {'explained_variance_ratio': [0.17788478164180901, 0.0923204136697244, 0.068906846552414, 0.05676441401046259, 0.047421989359743774, 0.039008083385609495, 0.03250474971685922, 0.026886241744237593, 0.022574946331619244, 0.019707689610182762], 'cumulative_variance': [0.17788478164180901, 0.2702051953115334, 0.3391120418... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpNAcb1-3DGlcpNAcb1-4DManpa1-OH | GalNAc(b1-3)GlcNAc(b1-4)Man(a1- | β-D-GalpNAc-(1→3)-β-D-GlcpNAc-(1→4)-α-D-Manp-(1→ | G82715NG | WURCS=2.0/3,3,2/[a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O]/1-2-3/a4-b1_b3-c1 | DGalpNAcb1-3DGlcpNAcb1-4DManpb1-OH | GalNAc(b1-3)GlcNAc(b1-4)Man(b1- | β-D-GalpNAc-(1→3)-β-D-GlcpNAc-(1→4)-β-D-Manp-(1→ | G69971AI | WURCS=2.0/3,3,2/[a1122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O]/1-2-3/a4-b1_b3-c1 | null | null | null | {'NAG3-GLC4': {'2': {'phi': -59.15, 'psi': -120.1, 'strain': 1.939, 'linkage': '1-3'}, '3': {'phi': -71.13, 'psi': -119.16, 'strain': 0.704, 'linkage': '1-3'}, '4': {'phi': -77.96, 'psi': -104.04, 'strain': 0.136, 'linkage': '1-3'}, '5': {'phi': -82.08, 'psi': 66.93, 'strain': 2.243, 'linkage': '1-3'}, '6': {'phi': -63... | {'NAG3-GLC4': {'2': {'phi': -59.15, 'psi': -120.1, 'strain': 1.939, 'linkage': '1-3'}, '3': {'phi': -71.19, 'psi': -119.14, 'strain': 0.704, 'linkage': '1-3'}, '4': {'phi': -77.91, 'psi': -104.07, 'strain': 0.136, 'linkage': '1-3'}, '5': {'phi': -82.13, 'psi': 66.94, 'strain': 2.243, 'linkage': '1-3'}, '6': {'phi': -63... | {'NAG3-GLC4': {'2': {'phi': -59.15, 'psi': -120.1, 'strain': 1.939, 'linkage': '1-3'}, '3': {'phi': -71.13, 'psi': -119.16, 'strain': 0.704, 'linkage': '1-3'}, '4': {'phi': -77.96, 'psi': -104.04, 'strain': 0.136, 'linkage': '1-3'}, '5': {'phi': -82.08, 'psi': 66.93, 'strain': 2.243, 'linkage': '1-3'}, '6': {'phi': -63... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00210/snfg.svg | ./torsion_data/GS00210_torsion_data.txt | {'Cluster 0': {'count': 11975, '3_2_phi_mean': -74.23, '3_2_psi_mean': -101.1, '4_3_phi_mean': -75.11, '4_3_psi_mean': 103.45, '5_4_phi_mean': -80.41, '5_4_psi_mean': 91.78, '6_5_phi_mean': -74.82, '6_5_psi_mean': -120.09, '8_6_phi_mean': -74.68, '8_6_psi_mean': 121.29, '9_8_phi_mean': -74.44, '9_8_psi_mean': -126.75, ... | G31661TX | GS00210 | DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpb1-OH | DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylp | GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl | β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-D-Xyl | WURCS=2.0/4,14,13/[u212h][a2112h-1b_1-5][a2122A-1b_1-5][a2112h-1b_1-5_2*NCC/3=O_4*OSO/3=O/3=O]/1-2-2-3-4-3-4-3-4-3-4-3-4-3/a4-b1_b3-c1_c3-d1_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1_j4-k1_k3-l1_l4-m1_m3-n1 | RES,1b:x-dxyl-PEN-1:5,2b:b-dgal-HEX-1:5,3b:b-dgal-HEX-1:5,4b:b-dglc-HEX-1:5|-1:a,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5|-1:a,7b:b-dgal-HEX-1:5,8b:b-dglc-HEX-1:5|-1:a,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5|-1:a,11b:b-dgal-HEX-1:5,12b:b-dglc-HEX-1:5|-1:a,13b:b-dgal-HEX-1:5,14b:b-dglc-HEX-1:5|-1:a,15s:sulfate,16s:sulfate,17s:s... | O1C[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](C(=O)O)[C@@H](O[C@@H]5O[C@H](CO)[C@H](OS(=O)(=O)O)[C@H](O[C@@H]6O[C@H](C(=O)O)[C@@H](O[C@@H]7O[C@H](CO)[C@H](OS(=O)(=O)O)[C@H](O[C@@H]8O[C@H](C(=O)O)[C@@H](O[C@@H]9O[C@H](CO)[C@H](OS(=O)(=O)O)[C@H](O[C@@H]%10O[C@H](C(=O)O)[C@@H](O[... | null | 2,945.53 | null | GlcA(b1-3) | {'GlcA': 6, 'GalNAc4S': 5, 'Gal': 2, 'Xyl': 1} | {'Hex': 2, 'HexA': 6, 'HexNAc': 5, 'Pen': 1, 'S': 5} | 1 | 5 | 6 | 15.546695 | {'Cluster 0': 39.91, 'Cluster 1': 19.38, 'Cluster 2': 18.79, 'Cluster 3': 14.34, 'Cluster 4': 7.57} | {'Cluster 0': 26.8573, 'Cluster 1': 16.2617, 'Cluster 2': 9.4624, 'Cluster 3': 6.5627, 'Cluster 4': 6.4594, 'Cluster 5': 5.5661, 'Cluster 6': 4.7462, 'Cluster 7': 3.103, 'Cluster 8': 3.083, 'Cluster 9': 2.8264, 'Cluster 10': 2.7497, 'Cluster 11': 2.5231, 'Cluster 12': 1.4932, 'Cluster 13': 1.4565, 'Cluster 14': 1.4132,... | {'2': 0.35008151978433005, '3': 0.3402859884323414, '4': 0.2833526625455986, '5': 0.28248245031625036, '6': 0.2781561094666314, '7': 0.25432121678682157, '8': 0.24329563193451464} | {'0': [18, 24, 26], '1': [1, 2, 3, 4, 6, 7, 8, 10, 11, 12, 13, 15, 16, 17, 19, 22, 23, 27, 31, 33, 34, 35, 38, 39, 40], '2': [0, 20, 29, 37], '3': [5, 14, 28, 30, 32, 41], '4': [9, 21, 25, 36]} | {'explained_variance_ratio': [0.22910007803213273, 0.11824296342419434, 0.07314298098995917, 0.04847316675211314, 0.03282148881997551, 0.02200377141370234, 0.02175311485935736, 0.018469304460127237, 0.016068226792328142, 0.015445177634572142], 'cumulative_variance': [0.22910007803213273, 0.34734304145632705, 0.42048602... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpa1-OH | GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl(a1- | β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-α-D-Xylp-(1→ | null | WURCS=2.0/4,14,13/[a212h-1a_1-5][a2112h-1b_1-5][a2122A-1b_1-5][a2112h-1b_1-5_2*NCC/3=O_4*OSO/3=O/3=O]/1-2-2-3-4-3-4-3-4-3-4-3-4-3/a4-b1_b3-c1_c3-d1_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1_j4-k1_k3-l1_l4-m1_m3-n1 | DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpb1-OH | GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc4S(b1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl(b1- | β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-β-D-Xylp-(1→ | null | WURCS=2.0/4,14,13/[a212h-1b_1-5][a2112h-1b_1-5][a2122A-1b_1-5][a2112h-1b_1-5_2*NCC/3=O_4*OSO/3=O/3=O]/1-2-2-3-4-3-4-3-4-3-4-3-4-3/a4-b1_b3-c1_c3-d1_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1_j4-k1_k3-l1_l4-m1_m3-n1 | null | null | GAG | {'GAL3-GAL4': {'2': {'phi': -74.17, 'psi': -169.62, 'strain': 1.129, 'linkage': '1-3'}, '3': {'phi': -70.34, 'psi': -157.59, 'strain': 0.699, 'linkage': '1-3'}, '4': {'phi': -62.34, 'psi': -113.92, 'strain': 0.545, 'linkage': '1-3'}, '5': {'phi': -89.51, 'psi': 179.26, 'strain': 2.485, 'linkage': '1-3'}, '6': {'phi': -... | {} | {} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00211/snfg.svg | ./torsion_data/GS00211_torsion_data.txt | {'Cluster 0': {'count': 10968, '3_2_phi_mean': -78.73, '3_2_psi_mean': 99.4, '4_3_phi_mean': -75.96, '4_3_psi_mean': -25.39, '5_4_phi_mean': 71.49, '5_4_psi_mean': 67.21, '12_4_phi_mean': 70.27, '12_4_psi_mean': 120.57, '6_5_phi_mean': -81.26, '6_5_psi_mean': 4.72, '8_5_phi_mean': -75.32, '8_5_psi_mean': 117.24, '10_5_... | G84571XJ | GS00211 | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4][DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4][DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)][Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/5,15,14/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-5-4-2-5-2-5-2-5/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i4-l1_i6-n1_j4-k1_l4-m1_n4-o1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dgal-HEX-1:5,13b:a-dman-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dgal-HEX-1:5,17b:b-dglc-HEX-1:5,18s:n-acetyl,19b:b-dgal-HEX-1:5,... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@... | null | 2,735.99 | null | Gal(b1-4) | {'GlcNAc': 7, 'Gal': 5, 'Man': 3} | {'Hex': 8, 'HexNAc': 7} | 1 | 5 | 6 | 13.697763 | {'Cluster 0': 27.42, 'Cluster 1': 24.37, 'Cluster 2': 20.64, 'Cluster 3': 19.47, 'Cluster 4': 8.11} | {'Cluster 0': 16.1609, 'Cluster 1': 11.1264, 'Cluster 2': 9.6465, 'Cluster 3': 8.1992, 'Cluster 4': 8.1592, 'Cluster 5': 6.7468, 'Cluster 6': 6.3769, 'Cluster 7': 5.6769, 'Cluster 8': 4.4821, 'Cluster 9': 4.3996, 'Cluster 10': 2.3923, 'Cluster 11': 2.2698, 'Cluster 12': 1.9373, 'Cluster 13': 1.3199, 'Cluster 14': 1.254... | {'2': 0.4369372137354393, '3': 0.5329829959319844, '4': 0.5682415700731287, '5': 0.48980453206178903, '6': 0.4227426079524084, '7': 0.39459513292838144, '8': 0.4103589225860848} | {'0': [0, 24, 28], '1': [3, 5, 13, 14, 25], '2': [6, 9, 10, 15, 19, 26], '3': [1, 4, 11, 12, 17, 18, 21, 22, 23, 27], '4': [2, 7, 8, 16, 20]} | {'explained_variance_ratio': [0.20507263953674815, 0.0965431760775181, 0.07531626642907763, 0.0531487895518198, 0.041432058474182916, 0.032565056668453767, 0.029782336574113943, 0.02757403078954771, 0.023856136326771568, 0.022007022465510086], 'cumulative_variance': [0.20507263953674815, 0.30161581561426626, 0.37693208... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4][DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)][Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G43985JK | WURCS=2.0/5,15,14/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-5-4-2-5-2-5-2-5/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i4-l1_i6-n1_j4-k1_l4-m1_n4-o1 | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4][DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)][Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G84347HP | WURCS=2.0/4,15,14/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-1-4-3-1-4-1-4-1-4/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i4-l1_i6-n1_j4-k1_l4-m1_n4-o1 | null | null | N-Glycan | {'MAN5-NAG10': {'2': {'phi': -74.25, 'psi': -78.41, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -99.19, 'psi': -79.43, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -114.11, 'psi': -120.89, 'strain': 3.196, 'linkage': '1-2'}, '5': {'phi': -74.36, 'psi': -82.93, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -... | {'MAN5-NAG10': {'2': {'phi': -74.25, 'psi': -78.41, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -99.14, 'psi': -79.42, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -114.09, 'psi': -120.9, 'strain': 3.196, 'linkage': '1-2'}, '5': {'phi': -74.36, 'psi': -82.97, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -8... | {'MAN5-NAG10': {'2': {'phi': -74.25, 'psi': -78.41, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -99.19, 'psi': -79.43, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -114.11, 'psi': -120.89, 'strain': 3.196, 'linkage': '1-2'}, '5': {'phi': -74.36, 'psi': -82.93, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -... | null | 15 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G84571XJ', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G84571XJ', 'url': 'https://glytoucan.org/Structures/Glycans/G84571XJ', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G84571XJ', 'url': 'https://sandbox.glyomics.org/explore.html?G84571XJ', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G84571XJ', 'url': 'https://gnome.glyom... | 3,394.72 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 131 | Saccharide | HexNAc(7)Hex(8) % 2735.98876093 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p((--2b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G55033UT', 'relationship': 'ancestor'};{'related_accession': 'G75568BH', 'relationship': 'ancestor'};{'related_accession': 'G75568BH', 'relationship': 'basecomposition'};{'related_accession': 'G55033UT', 'relationship': 'composition'};{'related_accession': 'G43985JK', 'relationship': 'descendant'... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00212/snfg.svg | ./torsion_data/GS00212_torsion_data.txt | {'Cluster 0': {'count': 14728, '3_2_phi_mean': -79.11, '3_2_psi_mean': 106.98, '4_3_phi_mean': -80.16, '4_3_psi_mean': -125.6, '5_4_phi_mean': 71.09, '5_4_psi_mean': -80.84, '7_4_phi_mean': 72.06, '7_4_psi_mean': 130.37, '3_2_phi_std': 11.2, '3_2_psi_std': 18.61, '4_3_phi_std': 12.29, '4_3_psi_std': 15.79, '5_4_phi_std... | G51766DQ | GS00212 | DManp[3Me]a1-3[DManp[3Me]a1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | DManp[3Me]a1-3[DManp[3Me]a1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Man3Me(a1-3)[Man3Me(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | α-D-Manp3Me-(1→3)[α-D-Manp3Me-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/4,5,4/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5_3*OC]/1-2-3-4-4/a4-b1_b4-c1_c3-d1_c6-e1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7s:methyl,8b:a-dman-HEX-1:5,9s:methyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6o(3+1)7n,7:5o(6+1)8d,8:8o(3+1)9n, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](OC)[C@@H]4O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](OC)[C@@H]4O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1CO | null | 938.36 | null | Man3Me(a1-6);Man3Me(a1-3) | {'Man3Me': 2, 'GlcNAc': 2, 'Man': 1} | {'Hex': 3, 'HexNAc': 2, 'Me': 2} | 1 | 5 | 6 | 11.017165 | {'Cluster 0': 36.82, 'Cluster 1': 28.71, 'Cluster 2': 25.94, 'Cluster 3': 5.63, 'Cluster 4': 2.9} | {'Cluster 0': 61.4239, 'Cluster 1': 19.2506, 'Cluster 2': 3.9546, 'Cluster 3': 3.9471, 'Cluster 4': 2.9522, 'Cluster 5': 2.1523, 'Cluster 6': 1.5923, 'Cluster 7': 1.0224, 'Cluster 8': 0.9099, 'Cluster 9': 0.8474, 'Cluster 10': 0.6699, 'Cluster 11': 0.5674, 'Cluster 12': 0.345, 'Cluster 13': 0.1525, 'Cluster 14': 0.145,... | {'2': 0.44307459558559087, '3': 0.44435720457691535, '4': 0.4897595555053184, '5': 0.317984937941152, '6': 0.3034057313459181, '7': 0.29804381081054326, '8': 0.23017092808954862} | {'0': [11], '1': [7, 9, 10], '2': [0, 8], '3': [1, 3, 6, 14], '4': [2, 4, 5, 12, 13, 15, 16]} | {'explained_variance_ratio': [0.17779078228237571, 0.09704063494449862, 0.08290425258428616, 0.05707182850007257, 0.03876058339736233, 0.03337794317233495, 0.03190057408424766, 0.026950020278902923, 0.023083643062221916, 0.022739576608138218], 'cumulative_variance': [0.17779078228237571, 0.2748314172268743, 0.357735669... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DManp[3Me]a1-3[DManp[3Me]a1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Man3Me(a1-3)[Man3Me(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | α-D-Manp3Me-(1→3)[α-D-Manp3Me-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G55599FW | WURCS=2.0/4,5,4/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5_3*OC]/1-2-3-4-4/a4-b1_b4-c1_c3-d1_c6-e1 | DManp[3Me]a1-3[DManp[3Me]a1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Man3Me(a1-3)[Man3Me(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | α-D-Manp3Me-(1→3)[α-D-Manp3Me-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G56606IL | WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5_3*OC]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1 | null | null | N-Glycan;Oligomannose | {'MAN4-MAN7': {'2': {'phi': 68.59, 'psi': -113.96, 'strain': 0.644, 'linkage': '1-3'}, '3': {'phi': 64.25, 'psi': -82.14, 'strain': 0.905, 'linkage': '1-3'}, '4': {'phi': 77.27, 'psi': -95.33, 'strain': 0.442, 'linkage': '1-3'}, '5': {'phi': 73.7, 'psi': -90.46, 'strain': 0.442, 'linkage': '1-3'}, '6': {'phi': 66.49, '... | {'MAN4-MAN7': {'2': {'phi': 68.59, 'psi': -113.96, 'strain': 0.644, 'linkage': '1-3'}, '3': {'phi': 64.27, 'psi': -82.17, 'strain': 0.905, 'linkage': '1-3'}, '4': {'phi': 77.25, 'psi': -95.37, 'strain': 0.442, 'linkage': '1-3'}, '5': {'phi': 73.75, 'psi': -90.55, 'strain': 0.442, 'linkage': '1-3'}, '6': {'phi': 66.44, ... | {'MAN4-MAN7': {'2': {'phi': 68.59, 'psi': -113.96, 'strain': 0.644, 'linkage': '1-3'}, '3': {'phi': 64.25, 'psi': -82.14, 'strain': 0.905, 'linkage': '1-3'}, '4': {'phi': 77.27, 'psi': -95.33, 'strain': 0.442, 'linkage': '1-3'}, '5': {'phi': 73.7, 'psi': -90.46, 'strain': 0.442, 'linkage': '1-3'}, '6': {'phi': 66.49, '... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00213/snfg.svg | ./torsion_data/GS00213_torsion_data.txt | {'Cluster 0': {'count': 11623, '3_2_phi_mean': -76.53, '3_2_psi_mean': -14.72, '6_2_phi_mean': -74.39, '6_2_psi_mean': -128.42, '4_3_phi_mean': -68.85, '4_3_psi_mean': -100.84, '5_3_phi_mean': -69.71, '5_3_psi_mean': 133.22, '3_2_phi_std': 20.03, '3_2_psi_std': 168.02, '6_2_phi_std': 21.07, '6_2_psi_std': 41.47, '4_3_p... | G08892TX | GS00213 | DGalpb1-3[LFucpa1-4]DGlcpNAcb1-6[DGalpb1-3]DGalpNAca1-OH | DGalpb1-3[LFucpa1-4]DGlcpNAcb1-6[DGalpb1-3]DGalpNAc | Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-6)[Gal(b1-3)]GalNAc | β-D-Galp-(1→3)[β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/4,5,4/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a3-b1_a6-c1_c3-d1_c4-e1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:b-dglc-HEX-1:5,5s:n-acetyl,6b:b-dgal-HEX-1:5,7b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:1o(6+1)4d,4:4d(2+1)5n,5:4o(3+1)6d,6:4o(4+1)7d, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H]2NC(C)=O | null | 894.33 | {'motif': 'G00034MO', 'motif_label': 'O-Glycan core 2 fuzzy'};{'motif': 'G00047MO', 'motif_label': 'Lea'};{'motif': 'G00047MO', 'motif_label': 'Lewis a'};{'motif': 'G00056MO', 'motif_label': 'Type 1 LN'} | Gal(b1-3);Fuc(a1-4) | {'Gal': 2, 'Fuc': 1, 'GlcNAc': 1, 'GalNAc': 1} | {'Hex': 2, 'HexNAc': 2, 'dHex': 1} | 14 | 16 | 25 | 11.127042 | {'Cluster 0': 38.74, 'Cluster 1': 19.83, 'Cluster 2': 15.42, 'Cluster 3': 15.09, 'Cluster 4': 10.92} | {'Cluster 0': 36.1131, 'Cluster 1': 16.9083, 'Cluster 2': 9.5057, 'Cluster 3': 7.4559, 'Cluster 4': 6.8227, 'Cluster 5': 5.4895, 'Cluster 6': 5.0162, 'Cluster 7': 3.573, 'Cluster 8': 2.1331, 'Cluster 9': 2.0765, 'Cluster 10': 1.5932, 'Cluster 11': 1.5298, 'Cluster 12': 0.9032, 'Cluster 13': 0.4033, 'Cluster 14': 0.2333... | {'2': 0.34397463367178904, '3': 0.33539173783075477, '4': 0.3901739061269942, '5': 0.3729828709555198, '6': 0.3753497510306623, '7': 0.3112266856815406, '8': 0.33343577096015437} | {'0': [2, 6, 10, 15, 16], '1': [1, 3, 5, 9, 11, 12], '2': [4, 8, 13], '3': [7, 14], '4': [0]} | {'explained_variance_ratio': [0.1972222592779869, 0.1301621934530031, 0.06505676129512435, 0.04459489797328675, 0.038145077209518055, 0.03140558887706655, 0.026838588985636572, 0.01938993542463759, 0.017979137665183918, 0.01628227458364084], 'cumulative_variance': [0.1972222592779869, 0.32738445273099, 0.39244121402611... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-3[LFucpa1-4]DGlcpNAcb1-6[DGalpb1-3]DGalpNAca1-OH | Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-6)[Gal(b1-3)]GalNAc(a1- | β-D-Galp-(1→3)[β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G43438SM | WURCS=2.0/4,5,4/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a3-b1_a6-c1_c3-d1_c4-e1 | DGalpb1-3[LFucpa1-4]DGlcpNAcb1-6[DGalpb1-3]DGalpNAcb1-OH | Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-6)[Gal(b1-3)]GalNAc(b1- | β-D-Galp-(1→3)[β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G05543BI | WURCS=2.0/4,5,4/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a3-b1_a6-c1_c3-d1_c4-e1 | null | null | O-Glycan | {'A2G2-GAL6': {'2': {'phi': -72.53, 'psi': -130.74, 'strain': 0.657, 'linkage': '1-3'}, '3': {'phi': -53.62, 'psi': -97.87, 'strain': 1.089, 'linkage': '1-3'}, '4': {'phi': -73.44, 'psi': -144.03, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -72.87, 'psi': -126.45, 'strain': 0.86, 'linkage': '1-3'}, '6': {'phi': -5... | {'A2G2-GAL6': {'2': {'phi': -72.53, 'psi': -130.74, 'strain': 0.657, 'linkage': '1-3'}, '3': {'phi': -53.58, 'psi': -97.86, 'strain': 1.089, 'linkage': '1-3'}, '4': {'phi': -73.47, 'psi': -144.05, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -72.84, 'psi': -126.47, 'strain': 0.86, 'linkage': '1-3'}, '6': {'phi': -5... | {'A2G2-GAL6': {'2': {'phi': -72.53, 'psi': -130.74, 'strain': 0.657, 'linkage': '1-3'}, '3': {'phi': -53.62, 'psi': -97.87, 'strain': 1.089, 'linkage': '1-3'}, '4': {'phi': -73.44, 'psi': -144.03, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -72.87, 'psi': -126.45, 'strain': 0.86, 'linkage': '1-3'}, '6': {'phi': -5... | null | 5 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G43438SM', 'url': 'https://www.glygen.org/glycan/G43438SM'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 2'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G08892TX', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491932607', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491932607', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G08892TX', 'url': 'https://glytoucan.org/Structures/Glycans/G08892TX', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G08892TX', 'url': 'https://sandbox.... | 1,118.58 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 393 | Saccharide | HexNAc(2)Hex(2)dHex(1) % 894.33286578 | freeEnd--?D-GalNAc(--3b1D-Gal,p)--6b1D-GlcNAc,p(--3b1D-Gal,p)--4a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000020', 'name': 'Lewis a', 'synonym': 'Le^a; Lea', 'keywords': 'Lewis a'} | {'related_accession': 'G40681EH', 'relationship': 'ancestor'};{'related_accession': 'G52732EM', 'relationship': 'ancestor'};{'related_accession': 'G71784JC', 'relationship': 'ancestor'};{'related_accession': 'G81420KA', 'relationship': 'ancestor'};{'related_accession': 'G93579XB', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00214/snfg.svg | ./torsion_data/GS00214_torsion_data.txt | {'Cluster 0': {'count': 18334, '3_2_phi_mean': -76.46, '3_2_psi_mean': 78.56, '8_2_phi_mean': -79.04, '8_2_psi_mean': -133.29, '4_3_phi_mean': -75.37, '4_3_psi_mean': -125.15, '5_4_phi_mean': -80.52, '5_4_psi_mean': 101.64, '6_5_phi_mean': -71.39, '6_5_psi_mean': -113.22, '7_6_phi_mean': -69.73, '7_6_psi_mean': 141.85,... | G86064CI | GS00214 | DNeup5Aca2-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3[LFucpa1-2DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DGalpNAca1-OH | DNeup5Aca2-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3[LFucpa1-2DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DGalpNAc | Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)]GalNAc | α-D-Neup5Ac-(2→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/5,10,9/[u2112h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-2-3-2-3-5/a3-b1_a6-f1_b4-c1_c3-d1_d3-e2_f4-g1_g3-h1_h4-i1_i2-j1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,9s:n-acetyl,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dgal-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3d(... | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O[C@]5(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O5)[C@H]4NC(C)=O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C... | null | 1,956.72 | null | Fuc(a1-2);Neu5Ac(a2-3) | {'GlcNAc': 4, 'Gal': 3, 'Fuc': 1, 'Neu5Ac': 1, 'GalNAc': 1} | {'Hex': 3, 'HexNAc': 5, 'Neu5Ac': 1, 'dHex': 1} | 1 | 5 | 6 | 13.865497 | {'Cluster 0': 30.55, 'Cluster 1': 24.68, 'Cluster 2': 22.46, 'Cluster 3': 14.31, 'Cluster 4': 7.99} | {'Cluster 0': 24.6792, 'Cluster 1': 22.7977, 'Cluster 2': 7.2676, 'Cluster 3': 6.3894, 'Cluster 4': 5.3095, 'Cluster 5': 4.7129, 'Cluster 6': 4.4496, 'Cluster 7': 4.2279, 'Cluster 8': 4.0113, 'Cluster 9': 2.7831, 'Cluster 10': 2.3181, 'Cluster 11': 2.1964, 'Cluster 12': 2.1881, 'Cluster 13': 1.3332, 'Cluster 14': 0.908... | {'2': 0.39833684968450994, '3': 0.2721978610702587, '4': 0.26369278819468556, '5': 0.2916672813939182, '6': 0.3035011879103104, '7': 0.29965494544318955, '8': 0.25289060526941864} | {'0': [1, 7, 8, 15, 18, 21, 24], '1': [2, 4, 6, 11, 14, 19, 20, 22, 25], '2': [0, 9, 27], '3': [3, 5, 10, 12, 16, 17, 23, 26, 28, 29], '4': [13]} | {'explained_variance_ratio': [0.2758536345141653, 0.10097369386298932, 0.07729096006234122, 0.045916308869801546, 0.03247324979579119, 0.030239856051413074, 0.02398326184091038, 0.022420672458682286, 0.020215744414423368, 0.017146735491464553], 'cumulative_variance': [0.2758536345141653, 0.3768273283771546, 0.454118288... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3[LFucpa1-2DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DGalpNAca1-OH | Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)]GalNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G22074DF | WURCS=2.0/5,10,9/[a2112h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-2-3-2-3-5/a3-b1_a6-f1_b4-c1_c3-d1_d3-e2_f4-g1_g3-h1_h4-i1_i2-j1 | DNeup5Aca2-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3[LFucpa1-2DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DGalpNAcb1-OH | Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)]GalNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G15674UG | WURCS=2.0/5,10,9/[a2112h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-2-3-2-3-5/a3-b1_a6-f1_b4-c1_c3-d1_d3-e2_f4-g1_g3-h1_h4-i1_i2-j1 | null | null | null | {'GAL6-FUC7': {'2': {'phi': -91.48, 'psi': 158.21, 'strain': 2.541, 'linkage': '1-2'}, '3': {'phi': -65.78, 'psi': 147.0, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -48.02, 'psi': 145.75, 'strain': 3.196, 'linkage': '1-2'}, '5': {'phi': -74.2, 'psi': 149.35, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -72.97... | {'GAL6-FUC7': {'2': {'phi': -91.48, 'psi': 158.21, 'strain': 2.541, 'linkage': '1-2'}, '3': {'phi': -65.8, 'psi': 147.08, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -48.08, 'psi': 145.79, 'strain': 3.196, 'linkage': '1-2'}, '5': {'phi': -74.16, 'psi': 149.35, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -73.0... | {'GAL6-FUC7': {'2': {'phi': -91.48, 'psi': 158.21, 'strain': 2.541, 'linkage': '1-2'}, '3': {'phi': -65.78, 'psi': 147.0, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -48.02, 'psi': 145.75, 'strain': 3.196, 'linkage': '1-2'}, '5': {'phi': -74.2, 'psi': 149.35, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -72.97... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00215/snfg.svg | ./torsion_data/GS00215_torsion_data.txt | {'Cluster 0': {'count': 19562, '3_2_phi_mean': -76.61, '3_2_psi_mean': -23.4, '7_2_phi_mean': -75.99, '7_2_psi_mean': -116.38, '4_3_phi_mean': -69.44, '4_3_psi_mean': -107.23, '6_3_phi_mean': -69.87, '6_3_psi_mean': 140.99, '3_2_phi_std': 22.33, '3_2_psi_std': 143.73, '7_2_phi_std': 18.1, '7_2_psi_std': 49.76, '4_3_phi... | G33278DK | GS00215 | DGalpb1-3[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6]DGalpNAca1-OH | DGalpb1-3[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6]DGalpNAc | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Gal(b1-3)]GalNAc | β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/5,6,5/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5/a3-b1_a6-c1_c3-d1_c4-e1_e3-f2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:b-dglc-HEX-1:5,5s:n-acetyl,6b:a-lgal-HEX-1:5|6:d,7b:b-dgal-HEX-1:5,8b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,9s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:1o(6+1)4d,4:4d(2+1)5n,5:4o(3+1)6d,6:4o(4+1)7d,7:7o(3+2)8d,8:8d(5+1)9n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)[C@H]3O)[C@H](O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H]2NC(C)=O | null | 1,185.43 | {'motif': 'G00034MO', 'motif_label': 'O-Glycan core 2 fuzzy'};{'motif': 'G00054MO', 'motif_label': 'Slex'};{'motif': 'G00054MO', 'motif_label': 'Sialyl Lewis x'} | Gal(b1-3);Neu5Ac(a2-3);Fuc(a1-3) | {'Gal': 2, 'Neu5Ac': 1, 'Fuc': 1, 'GlcNAc': 1, 'GalNAc': 1} | {'Hex': 2, 'HexNAc': 2, 'Neu5Ac': 1, 'dHex': 1} | 21 | 21 | 33 | 11.767902 | {'Cluster 0': 32.6, 'Cluster 1': 29.69, 'Cluster 2': 17.13, 'Cluster 3': 12.75, 'Cluster 4': 7.83} | {'Cluster 0': 41.6442, 'Cluster 1': 13.2653, 'Cluster 2': 11.2339, 'Cluster 3': 10.0723, 'Cluster 4': 5.9827, 'Cluster 5': 4.6362, 'Cluster 6': 3.5646, 'Cluster 7': 2.0631, 'Cluster 8': 2.0115, 'Cluster 9': 1.3499, 'Cluster 10': 1.0999, 'Cluster 11': 1.0149, 'Cluster 12': 0.6616, 'Cluster 13': 0.4883, 'Cluster 14': 0.4... | {'2': 0.5889524486869795, '3': 0.4762982102712669, '4': 0.4028566709920213, '5': 0.3663395203888681, '6': 0.3570511460093784, '7': 0.33150583622689406, '8': 0.2990367763252836} | {'0': [2, 4, 5, 9, 15, 19], '1': [8, 12], '2': [0, 11, 13, 16], '3': [1, 3, 6, 7, 10, 14, 18], '4': [17]} | {'explained_variance_ratio': [0.19618306778000977, 0.1414727159260303, 0.07730584459877902, 0.05898545398069263, 0.0501854482899156, 0.0440113133051918, 0.02556012961343078, 0.022306107247610462, 0.016919548922750913, 0.013896733130873105], 'cumulative_variance': [0.19618306778000977, 0.3376557837060401, 0.414961628304... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-3[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6]DGalpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Gal(b1-3)]GalNAc(a1- | β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G41245OZ | WURCS=2.0/5,6,5/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5/a3-b1_a6-c1_c3-d1_c4-e1_e3-f2 | DGalpb1-3[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6]DGalpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Gal(b1-3)]GalNAc(b1- | β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G45596OR | WURCS=2.0/5,6,5/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5/a3-b1_a6-c1_c3-d1_c4-e1_e3-f2 | null | null | O-Glycan | {'A2G2-GAL7': {'2': {'phi': -75.65, 'psi': -124.1, 'strain': 0.86, 'linkage': '1-3'}, '3': {'phi': -79.48, 'psi': -127.18, 'strain': 0.86, 'linkage': '1-3'}, '4': {'phi': -70.74, 'psi': -139.46, 'strain': 0.657, 'linkage': '1-3'}, '5': {'phi': -76.26, 'psi': -141.69, 'strain': 0.582, 'linkage': '1-3'}, '6': {'phi': -59... | {'A2G2-GAL7': {'2': {'phi': -75.65, 'psi': -124.1, 'strain': 0.86, 'linkage': '1-3'}, '3': {'phi': -79.6, 'psi': -127.13, 'strain': 0.86, 'linkage': '1-3'}, '4': {'phi': -70.82, 'psi': -139.46, 'strain': 0.657, 'linkage': '1-3'}, '5': {'phi': -76.22, 'psi': -141.78, 'strain': 0.582, 'linkage': '1-3'}, '6': {'phi': -59.... | {'A2G2-GAL7': {'2': {'phi': -75.65, 'psi': -124.1, 'strain': 0.86, 'linkage': '1-3'}, '3': {'phi': -79.48, 'psi': -127.18, 'strain': 0.86, 'linkage': '1-3'}, '4': {'phi': -70.74, 'psi': -139.46, 'strain': 0.657, 'linkage': '1-3'}, '5': {'phi': -76.26, 'psi': -141.69, 'strain': 0.582, 'linkage': '1-3'}, '6': {'phi': -59... | null | 6 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G29014XV', 'url': 'https://www.glygen.org/glycan/G29014XV'}, {'database': 'Subsumption', 'id': 'G41245OZ', 'url': 'https://www.glygen.org/glycan/G41245OZ'}], 'common_name': 'Human', 'glygen_name... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 2'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G33278DK', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491943478', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491943478', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G33278DK', 'url': 'https://glytoucan.org/Structures/Glycans/G33278DK', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G33278DK', 'url': 'https://sandbox.... | 1,479.76 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 328 | Saccharide | HexNAc(2)Hex(2)dHex(1)NeuAc(1) % 1185.42828242 | freeEnd--?D-GalNAc(--3b1D-Gal,p)--6b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000022', 'name': 'Sialyl Lewis x', 'synonym': 'SLe^x; SLex; Slex',... | {'related_accession': 'G26903VB', 'relationship': 'ancestor'};{'related_accession': 'G75365RL', 'relationship': 'ancestor'};{'related_accession': 'G94827CQ', 'relationship': 'ancestor'};{'related_accession': 'G97887RK', 'relationship': 'ancestor'};{'related_accession': 'G99752IF', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00216/snfg.svg | ./torsion_data/GS00216_torsion_data.txt | {'Cluster 0': {'count': 14380, '3_2_phi_mean': -76.17, '3_2_psi_mean': 110.71, '4_3_phi_mean': -79.77, '4_3_psi_mean': 135.95, '5_4_phi_mean': -75.44, '5_4_psi_mean': 99.84, '3_2_phi_std': 16.98, '3_2_psi_std': 38.09, '4_3_phi_std': 9.35, '4_3_psi_std': 11.4, '5_4_phi_std': 18.22, '5_4_psi_std': 21.87}, 'Cluster 1': {'... | G41876BL | GS00216 | DGalpb1-3DGalpNAcb1-4[DNeup5Aca2-3]DGalpb1-4DGlcpa1-OH | DGalpb1-3DGalpNAcb1-4[DNeup5Aca2-3]DGalpb1-4DGlcp | Gal(b1-3)GalNAc(b1-4)[Neu5Ac(a2-3)]Gal(b1-4)Glc | α-D-Neup5Ac-(2→3)[β-D-Galp-(1→3)-β-D-GalpNAc-(1→4)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,5,4/[u2122h][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4-2/a4-b1_b3-c2_b4-d1_d3-e1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,4s:n-acetyl,5b:b-dgal-HEX-1:5,6s:n-acetyl,7b:b-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2o(3+2)3d,3:3d(5+1)4n,4:2o(4+1)5d,5:5d(2+1)6n,6:5o(3+1)7d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H]3NC(C)=O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@H]1CO | null | 998.34 | {'motif': 'G30207PZ', 'motif_label': 'GM4'} | Gal(b1-3);Neu5Ac(a2-3) | {'Gal': 2, 'GalNAc': 1, 'Neu5Ac': 1, 'Glc': 1} | {'Hex': 3, 'HexNAc': 1, 'Neu5Ac': 1} | 18 | 19 | 29 | 11.015005 | {'Cluster 0': 35.95, 'Cluster 1': 33.88, 'Cluster 2': 14.58, 'Cluster 3': 10.85, 'Cluster 4': 4.74} | {'Cluster 0': 59.2391, 'Cluster 1': 8.2817, 'Cluster 2': 7.3893, 'Cluster 3': 5.7094, 'Cluster 4': 5.407, 'Cluster 5': 3.0722, 'Cluster 6': 2.8472, 'Cluster 7': 2.6197, 'Cluster 8': 1.4124, 'Cluster 9': 1.0749, 'Cluster 10': 0.7899, 'Cluster 11': 0.7849, 'Cluster 12': 0.6724, 'Cluster 13': 0.4025, 'Cluster 14': 0.165, ... | {'2': 0.567846648544456, '3': 0.391809013744016, '4': 0.3234149015114651, '5': 0.30085519667047234, '6': 0.29528516132548804, '7': 0.29158290540471404, '8': 0.2431065835232798} | {'0': [4, 10, 12, 16], '1': [6, 9], '2': [0, 5], '3': [8, 11, 13], '4': [1, 2, 3, 7, 14, 15]} | {'explained_variance_ratio': [0.17203201986971228, 0.09132529027472638, 0.07625989399341353, 0.05243384814970654, 0.04740166328001126, 0.03972574504223564, 0.030336723525465636, 0.02332745845013908, 0.02200190195818773, 0.01838509374150405], 'cumulative_variance': [0.17203201986971228, 0.26335731014443864, 0.3396172041... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-3DGalpNAcb1-4[DNeup5Aca2-3]DGalpb1-4DGlcpa1-OH | Gal(b1-3)GalNAc(b1-4)[Neu5Ac(a2-3)]Gal(b1-4)Glc(a1- | α-D-Neup5Ac-(2→3)[β-D-Galp-(1→3)-β-D-GalpNAc-(1→4)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G64489RR | WURCS=2.0/4,5,4/[a2122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4-2/a4-b1_b3-c2_b4-d1_d3-e1 | DGalpb1-3DGalpNAcb1-4[DNeup5Aca2-3]DGalpb1-4DGlcpb1-OH | Gal(b1-3)GalNAc(b1-4)[Neu5Ac(a2-3)]Gal(b1-4)Glc(b1- | α-D-Neup5Ac-(2→3)[β-D-Galp-(1→3)-β-D-GalpNAc-(1→4)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G48558GR | WURCS=2.0/4,5,4/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4-2/a4-b1_b3-c2_b4-d1_d3-e1 | GM1b | null | O-Glycan | {'GLC4-GAL5': {'2': {'phi': -61.13, 'psi': -132.59, 'strain': 0.758, 'linkage': '1-3'}, '3': {'phi': -77.39, 'psi': -99.14, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -79.52, 'psi': -135.94, 'strain': 0.657, 'linkage': '1-3'}, '5': {'phi': -66.96, 'psi': -113.27, 'strain': 0.545, 'linkage': '1-3'}, '6': {'phi': -7... | {'GLC4-GAL5': {'2': {'phi': -61.13, 'psi': -132.59, 'strain': 0.758, 'linkage': '1-3'}, '3': {'phi': -77.45, 'psi': -99.11, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -79.45, 'psi': -135.97, 'strain': 0.657, 'linkage': '1-3'}, '5': {'phi': -66.88, 'psi': -113.27, 'strain': 0.545, 'linkage': '1-3'}, '6': {'phi': -7... | {'GLC4-GAL5': {'2': {'phi': -61.13, 'psi': -132.59, 'strain': 0.758, 'linkage': '1-3'}, '3': {'phi': -77.39, 'psi': -99.14, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -79.52, 'psi': -135.94, 'strain': 0.657, 'linkage': '1-3'}, '5': {'phi': -66.96, 'psi': -113.27, 'strain': 0.545, 'linkage': '1-3'}, '6': {'phi': -7... | {'taxon_id': '662', 'taxon_label': 'Vibrio', 'evidence': [{'label': 'GlyTouCan(bcsdb)', 'id': 'glytoucan.org/Structures/Glycans/G41876BL'}]};{'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G41876BL'}]};{'taxon_id... | 5 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G41876BL', 'url': 'https://glycosmos.org/glycans/show/G41876BL'}], 'common_name': 'Bovine', 'glygen_name': 'Bovine', 'reference_species': 'Bos taurus [9913]'};{'taxid': 9031, 'name': 'Gallus gallus', 'an... | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Ganglio series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G41876BL', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G41876... | {'id': '491851685', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491851685', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '731', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10691', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+10691', 'database': 'Car... | 1,264.64 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 393 | Saccharide | HexNAc(1)Hex(3)NeuAc(1) % 998.34382444 | freeEnd--?D-Glc--4b1D-Gal,p(--3a2D-NeuAc,p)--4b1D-GalNAc,p--3b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000098', 'name': 'GM1', 'keywords': 'Glycolipid; Monosialylated ganglioside'} | {'related_accession': 'G09816OK', 'relationship': 'ancestor'};{'related_accession': 'G14090IF', 'relationship': 'ancestor'};{'related_accession': 'G29847FN', 'relationship': 'ancestor'};{'related_accession': 'G49488CS', 'relationship': 'ancestor'};{'related_accession': 'G53224UW', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00217/snfg.svg | ./torsion_data/GS00217_torsion_data.txt | {'Cluster 0': {'count': 16384, '3_2_phi_mean': -74.64, '3_2_psi_mean': -101.58, '4_3_phi_mean': -73.12, '4_3_psi_mean': 102.62, '5_4_phi_mean': -80.13, '5_4_psi_mean': 89.12, '6_5_phi_mean': 77.23, '6_5_psi_mean': -139.03, '7_6_phi_mean': -76.69, '7_6_psi_mean': 116.43, '8_7_phi_mean': 77.47, '8_7_psi_mean': -143.81, '... | G88614RE | GS00217 | DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpb1-OH | DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylp | GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl | α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-D-Xyl | WURCS=2.0/4,11,10/[u212h][a2112h-1b_1-5][a2122A-1b_1-5][a2122h-1a_1-5_2*NCC/3=O]/1-2-2-3-4-3-4-3-4-3-4/a4-b1_b3-c1_c3-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1_j4-k1 | RES,1b:x-dxyl-PEN-1:5,2b:b-dgal-HEX-1:5,3b:b-dgal-HEX-1:5,4b:b-dglc-HEX-1:5|-1:a,5b:a-dglc-HEX-1:5,6s:n-acetyl,7b:b-dglc-HEX-1:5|-1:a,8b:a-dglc-HEX-1:5,9s:n-acetyl,10b:b-dglc-HEX-1:5|-1:a,11b:a-dglc-HEX-1:5,12s:n-acetyl,13b:b-dglc-HEX-1:5|-1:a,14b:a-dglc-HEX-1:5,15s:n-acetyl,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3o(3+1)4d,4:4o... | O1C[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](C(=O)O)[C@@H](O[C@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](C(=O)O)[C@@H](O[C@H]7O[C@H](CO)[C@@H](O[C@@H]8O[C@H](C(=O)O)[C@@H](O[C@H]9O[C@H](CO)[C@@H](O[C@@H]%10O[C@H](C(=O)O)[C@@H](O[C@H]%11O[C@H](CO)[C@@H](O)[C@H](O)[C@H]%11NC(C)=O)[C@H... | null | 1,990.6 | null | GlcNAc(a1-4) | {'GlcNAc': 4, 'GlcA': 4, 'Gal': 2, 'Xyl': 1} | {'Hex': 2, 'HexA': 4, 'HexNAc': 4, 'Pen': 1} | 1 | 5 | 6 | 13.501564 | {'Cluster 0': 54.61, 'Cluster 1': 18.91, 'Cluster 2': 18.84, 'Cluster 3': 5.07, 'Cluster 4': 2.57} | {'Cluster 0': 61.6672, 'Cluster 1': 12.5921, 'Cluster 2': 10.5856, 'Cluster 3': 3.733, 'Cluster 4': 2.1065, 'Cluster 5': 1.8565, 'Cluster 6': 1.7832, 'Cluster 7': 1.1399, 'Cluster 8': 0.9466, 'Cluster 9': 0.7766, 'Cluster 10': 0.5466, 'Cluster 11': 0.44, 'Cluster 12': 0.2833, 'Cluster 13': 0.21, 'Cluster 14': 0.19, 'Cl... | {'2': 0.6504295337364051, '3': 0.4155366323650743, '4': 0.29066786216918444, '5': 0.29487634909001964, '6': 0.2488954949028063, '7': 0.2328334154779736, '8': 0.2324641894994411} | {'0': [0, 18], '1': [3, 6, 7, 9, 10, 14, 19, 20, 21, 22, 23], '2': [8, 17, 24, 25], '3': [1, 2, 4, 5, 11, 13, 16, 26, 27], '4': [12, 15]} | {'explained_variance_ratio': [0.2887856116397445, 0.09229202884859448, 0.04781220819347548, 0.046762339655951765, 0.03434422481316115, 0.028799118582925814, 0.02422030049200996, 0.020502024484478572, 0.017855505023068954, 0.016498865681911726], 'cumulative_variance': [0.2887856116397445, 0.381077640488339, 0.4288898486... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpa1-OH | GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl(a1- | α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-α-D-Xylp-(1→ | G53130CS | WURCS=2.0/4,11,10/[a212h-1a_1-5][a2112h-1b_1-5][a2122A-1b_1-5][a2122h-1a_1-5_2*NCC/3=O]/1-2-2-3-4-3-4-3-4-3-4/a4-b1_b3-c1_c3-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1_j4-k1 | DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpb1-OH | GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl(b1- | α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-β-D-Xylp-(1→ | null | WURCS=2.0/4,11,10/[a212h-1b_1-5][a2112h-1b_1-5][a2122A-1b_1-5][a2122h-1a_1-5_2*NCC/3=O]/1-2-2-3-4-3-4-3-4-3-4/a4-b1_b3-c1_c3-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1_j4-k1 | null | null | GAG | {'GAL3-GAL4': {'2': {'phi': -100.06, 'psi': -156.44, 'strain': 2.072, 'linkage': '1-3'}, '3': {'phi': -77.18, 'psi': -127.68, 'strain': 0.86, 'linkage': '1-3'}, '4': {'phi': -58.17, 'psi': -137.26, 'strain': 1.634, 'linkage': '1-3'}, '5': {'phi': -83.93, 'psi': -164.83, 'strain': 1.064, 'linkage': '1-3'}, '6': {'phi': ... | {'GAL3-GAL4': {'2': {'phi': -100.06, 'psi': -156.44, 'strain': 2.072, 'linkage': '1-3'}, '3': {'phi': -77.11, 'psi': -127.64, 'strain': 0.86, 'linkage': '1-3'}, '4': {'phi': -58.19, 'psi': -137.22, 'strain': 1.634, 'linkage': '1-3'}, '5': {'phi': -83.92, 'psi': -164.81, 'strain': 1.064, 'linkage': '1-3'}, '6': {'phi': ... | {} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00218/snfg.svg | ./torsion_data/GS00218_torsion_data.txt | {'Cluster 0': {'count': 8406, '3_2_phi_mean': -72.54, '3_2_psi_mean': -102.38, '4_3_phi_mean': -73.58, '4_3_psi_mean': 101.97, '5_4_phi_mean': -80.19, '5_4_psi_mean': 88.18, '6_5_phi_mean': -80.07, '6_5_psi_mean': -127.57, '7_6_phi_mean': -80.97, '7_6_psi_mean': 90.42, '8_7_phi_mean': -74.73, '8_7_psi_mean': -119.08, '... | G11273IV | GS00218 | DGalpb1-4DGlcpNAcb1-3DGalp[6S]b1-4DGlcpNAc[6S]b1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpb1-OH | DGalpb1-4DGlcpNAcb1-3DGalp[6S]b1-4DGlcpNAc[6S]b1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylp | Gal(b1-4)GlcNAc(b1-3)Gal6S(b1-4)GlcNAc6S(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp6S-(1→4)-β-D-GlcpNAc6S-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-D-Xyl | WURCS=2.0/6,11,10/[u212h][a2112h-1b_1-5][a2122A-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a2112h-1b_1-5_6*OSO/3=O/3=O]/1-2-2-3-2-4-2-5-6-4-2/a4-b1_b3-c1_c3-d1_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1_j4-k1 | RES,1b:x-dxyl-PEN-1:5,2b:b-dgal-HEX-1:5,3b:b-dgal-HEX-1:5,4b:b-dglc-HEX-1:5|-1:a,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:b-dgal-HEX-1:5,9b:b-dglc-HEX-1:5,10b:b-dgal-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14s:sulfate,15s:sulfate,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3o(3+1)4d,4:4o(4+1)5d,5:5o(3+1)... | O1C[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](C(=O)O)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O[C@@H]6O[C@H](CO)[C@@H](O[C@@H]7O[C@H](CO)[C@H](O)[C@H](O[C@@H]8O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]9O[C@H](COS(=O)(=O)O)[C@H](O)[C@H](O[C@@H]%10O[C@H](CO)[C@@H](O[C@@H]%11O[C@H](CO)[C@H... | null | 2,067.55 | null | Gal(b1-4) | {'Gal': 5, 'GlcNAc': 2, 'Gal6S': 1, 'GlcNAc6S': 1, 'GlcA': 1, 'Xyl': 1} | {'Hex': 6, 'HexA': 1, 'HexNAc': 3, 'Pen': 1, 'S': 2} | 1 | 5 | 6 | 14.00371 | {'Cluster 0': 28.02, 'Cluster 1': 27.91, 'Cluster 2': 18.74, 'Cluster 3': 16.17, 'Cluster 4': 9.16} | {'Cluster 0': 35.0465, 'Cluster 1': 21.2045, 'Cluster 2': 19.4481, 'Cluster 3': 7.3393, 'Cluster 4': 3.5796, 'Cluster 5': 2.943, 'Cluster 6': 2.7664, 'Cluster 7': 1.2432, 'Cluster 8': 1.1466, 'Cluster 9': 1.0566, 'Cluster 10': 0.9266, 'Cluster 11': 0.8866, 'Cluster 12': 0.6999, 'Cluster 13': 0.5299, 'Cluster 14': 0.26,... | {'2': 0.32067349026085823, '3': 0.31144006247145295, '4': 0.16992752720424392, '5': 0.23941605658052806, '6': 0.2301751295032738, '7': 0.19778959027709436, '8': 0.1800400257839913} | {'0': [0], '1': [1, 2, 3, 4, 6, 8, 9, 11, 12, 13, 14, 15, 17, 20, 21, 22, 25, 27, 28, 29, 30], '2': [7, 10, 18, 26], '3': [5, 19, 23], '4': [16, 24]} | {'explained_variance_ratio': [0.2158929332354319, 0.10210649873603153, 0.07266645522853124, 0.049302223087915695, 0.040613213551999205, 0.03541706323561098, 0.02313948071429688, 0.02225458370879073, 0.021267871541462466, 0.019679356465866934], 'cumulative_variance': [0.2158929332354319, 0.3179994319714634, 0.3906658871... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-3DGalp[6S]b1-4DGlcpNAc[6S]b1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpa1-OH | Gal(b1-4)GlcNAc(b1-3)Gal6S(b1-4)GlcNAc6S(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp6S-(1→4)-β-D-GlcpNAc6S-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-α-D-Xylp-(1→ | null | WURCS=2.0/6,11,10/[a212h-1a_1-5][a2112h-1b_1-5][a2122A-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a2112h-1b_1-5_6*OSO/3=O/3=O]/1-2-2-3-2-4-2-5-6-4-2/a4-b1_b3-c1_c3-d1_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1_j4-k1 | DGalpb1-4DGlcpNAcb1-3DGalp[6S]b1-4DGlcpNAc[6S]b1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpb1-OH | Gal(b1-4)GlcNAc(b1-3)Gal6S(b1-4)GlcNAc6S(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp6S-(1→4)-β-D-GlcpNAc6S-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-β-D-Xylp-(1→ | null | WURCS=2.0/6,11,10/[a212h-1b_1-5][a2112h-1b_1-5][a2122A-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a2112h-1b_1-5_6*OSO/3=O/3=O]/1-2-2-3-2-4-2-5-6-4-2/a4-b1_b3-c1_c3-d1_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1_j4-k1 | null | null | GAG | {'GAL3-GAL4': {'2': {'phi': -106.63, 'psi': -172.52, 'strain': 2.453, 'linkage': '1-3'}, '3': {'phi': -107.17, 'psi': -160.3, 'strain': 1.888, 'linkage': '1-3'}, '4': {'phi': -65.23, 'psi': -126.84, 'strain': 0.882, 'linkage': '1-3'}, '5': {'phi': -81.84, 'psi': -80.32, 'strain': 1.126, 'linkage': '1-3'}, '6': {'phi': ... | {} | {} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00219/snfg.svg | ./torsion_data/GS00219_torsion_data.txt | {'Cluster 0': {'count': 10437, '3_2_phi_mean': -73.54, '3_2_psi_mean': 121.98, '4_3_phi_mean': -87.71, '4_3_psi_mean': -88.66, '10_3_phi_mean': -79.47, '10_3_psi_mean': 107.5, '5_4_phi_mean': -67.78, '5_4_psi_mean': -109.28, '9_4_phi_mean': -68.99, '9_4_psi_mean': 141.18, '6_5_phi_mean': -74.36, '6_5_psi_mean': 108.31,... | G22880KN | GS00219 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[LFucpa1-2DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[LFucpa1-2DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcp | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)]Gal(b1-4)Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,11,10/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-3-4-2-3-2-4/a4-b1_b3-c1_b6-f1_c3-d1_d2-e1_f3-g1_f4-h1_h3-i1_i3-j1_j2-k1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-lgal-HEX-1:5|6:d,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:a-lgal-HEX-1:5|6:d,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:5o(2+1)6d,6... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O[C@@H]7O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]7O)[C@H]5NC(C)=O)[C@H]4O)[C@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H]3NC(C)=O)[C@H](O)[C@H]... | null | 1,875.69 | {'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00294TN', 'motif_label': 'Blood group H (type 1)'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Fuc(a1-2) | {'Gal': 4, 'Fuc': 3, 'GlcNAc': 3, 'Glc': 1} | {'Hex': 5, 'HexNAc': 3, 'dHex': 3} | 31 | 32 | 53 | 13.071443 | {'Cluster 0': 34.79, 'Cluster 1': 27.72, 'Cluster 2': 24.4, 'Cluster 3': 7.34, 'Cluster 4': 5.75} | {'Cluster 0': 20.5446, 'Cluster 1': 15.7351, 'Cluster 2': 11.0622, 'Cluster 3': 9.4024, 'Cluster 4': 8.8058, 'Cluster 5': 6.416, 'Cluster 6': 6.2194, 'Cluster 7': 5.6894, 'Cluster 8': 4.0529, 'Cluster 9': 2.1698, 'Cluster 10': 1.5998, 'Cluster 11': 1.5732, 'Cluster 12': 1.1799, 'Cluster 13': 1.1232, 'Cluster 14': 1.029... | {'2': 0.4019641544590673, '3': 0.354832849563392, '4': 0.3021356514890159, '5': 0.2982113395281494, '6': 0.31786773995305356, '7': 0.2496459524034972, '8': 0.2196835141561186} | {'0': [10, 21, 24], '1': [3, 5, 8, 11, 13, 14, 15, 16], '2': [1, 2, 6, 9, 12, 17, 18, 25], '3': [4, 7, 20, 22], '4': [0, 19, 23]} | {'explained_variance_ratio': [0.23586106756198175, 0.12202115725685245, 0.06169440628877248, 0.05154179639551538, 0.04372489027555537, 0.031411867046377266, 0.02709297666353304, 0.02519283239682136, 0.018407452782433234, 0.016436431240635953], 'cumulative_variance': [0.23586106756198175, 0.3578822248188342, 0.419576631... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[LFucpa1-2DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)]Gal(b1-4)Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G89851FF | WURCS=2.0/4,11,10/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-3-4-2-3-2-4/a4-b1_b3-c1_b6-f1_c3-d1_d2-e1_f3-g1_f4-h1_h3-i1_i3-j1_j2-k1 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[LFucpa1-2DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)]Gal(b1-4)Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G33662YL | WURCS=2.0/4,11,10/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-3-4-2-3-2-4/a4-b1_b3-c1_b6-f1_c3-d1_d2-e1_f3-g1_f4-h1_h3-i1_i3-j1_j2-k1 | null | null | null | {'GAL7-FUC8': {'2': {'phi': -57.73, 'psi': 127.0, 'strain': 1.886, 'linkage': '1-2'}, '3': {'phi': -70.27, 'psi': 128.79, 'strain': 1.159, 'linkage': '1-2'}, '4': {'phi': -73.21, 'psi': 127.31, 'strain': 1.159, 'linkage': '1-2'}, '5': {'phi': -75.03, 'psi': 133.08, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -68.2... | {'GAL7-FUC8': {'2': {'phi': -57.73, 'psi': 127.0, 'strain': 1.886, 'linkage': '1-2'}, '3': {'phi': -70.22, 'psi': 128.78, 'strain': 1.159, 'linkage': '1-2'}, '4': {'phi': -73.2, 'psi': 127.32, 'strain': 1.159, 'linkage': '1-2'}, '5': {'phi': -74.98, 'psi': 133.03, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -68.21... | {'GAL7-FUC8': {'2': {'phi': -57.73, 'psi': 127.0, 'strain': 1.886, 'linkage': '1-2'}, '3': {'phi': -70.27, 'psi': 128.79, 'strain': 1.159, 'linkage': '1-2'}, '4': {'phi': -73.21, 'psi': 127.31, 'strain': 1.159, 'linkage': '1-2'}, '5': {'phi': -75.03, 'psi': 133.08, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -68.2... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G22880KN'}]} | 11 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G22880KN', 'url': 'https://glycosmos.org/glycans/show/G22880KN'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G22880KN', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G22880... | {'id': '491845412', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491845412', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '8766', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '24387', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+24387', 'database': 'Ca... | 2,324.19 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 179 | Saccharide | HexNAc(3)Hex(5)dHex(3) % 1875.68652662 | freeEnd--?D-Glc--4b1D-Gal,p(--3b1D-GlcNAc,p--3b1D-Gal,p--2a1L-Fuc,p)--6b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3b1D-GlcNAc,p--3b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Le... | {'related_accession': 'G06231AO', 'relationship': 'ancestor'};{'related_accession': 'G47573CE', 'relationship': 'ancestor'};{'related_accession': 'G47702MW', 'relationship': 'ancestor'};{'related_accession': 'G49813VI', 'relationship': 'ancestor'};{'related_accession': 'G06231AO', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00220/snfg.svg | ./torsion_data/GS00220_torsion_data.txt | {'Cluster 0': {'count': 17562, '3_2_phi_mean': -76.07, '3_2_psi_mean': 14.84, '4_2_phi_mean': -76.71, '4_2_psi_mean': 109.5, '5_4_phi_mean': -77.98, '5_4_psi_mean': -123.5, '6_5_phi_mean': 72.57, '6_5_psi_mean': -85.4, '7_5_phi_mean': 70.25, '7_5_psi_mean': 115.9, '8_5_phi_mean': -83.02, '8_5_psi_mean': -108.51, '3_2_p... | G75311GD | GS00220 | DManpa1-3[DManpa1-6][DXylpb1-2]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | DManpa1-3[DManpa1-6][DXylpb1-2]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Xyl(b1-2)[Man(a1-3)][Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-D-Manp-(1→3)[α-D-Manp-(1→6)][β-D-Xylp-(1→2)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,7,6/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a212h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-5-5-6/a4-b1_a6-g1_b4-c1_c2-d1_c3-e1_c6-f1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:b-dxyl-PEN-1:5,7b:a-dman-HEX-1:5,8b:a-dman-HEX-1:5,9b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(2+1)6d,6:5o(3+1)7d,7:5o(6+1)8d,8:1o(6+1)9d, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O)[C@@H]3O[C@@H]4OC[C@@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]2NC(C)=O)[C@H]1CO[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O | null | 1,188.43 | {'motif': 'G00026MO', 'motif_label': 'N-Glycan core basic'} | Xyl(b1-2);Man(a1-6);Man(a1-3);Fuc(a1-6) | {'Man': 3, 'GlcNAc': 2, 'Xyl': 1, 'Fuc': 1} | {'Hex': 3, 'HexNAc': 2, 'Pen': 1, 'dHex': 1} | 19 | 21 | 34 | 12.429392 | {'Cluster 0': 43.9, 'Cluster 1': 35.87, 'Cluster 2': 9.32, 'Cluster 3': 6.64, 'Cluster 4': 4.27} | {'Cluster 0': 28.3047, 'Cluster 1': 22.3753, 'Cluster 2': 9.5965, 'Cluster 3': 8.0267, 'Cluster 4': 6.6793, 'Cluster 5': 5.5169, 'Cluster 6': 5.447, 'Cluster 7': 2.7297, 'Cluster 8': 2.2323, 'Cluster 9': 1.7373, 'Cluster 10': 1.6248, 'Cluster 11': 1.2024, 'Cluster 12': 1.0199, 'Cluster 13': 0.7599, 'Cluster 14': 0.7449... | {'2': 0.29841972199358535, '3': 0.2887144366201178, '4': 0.26674398755094736, '5': 0.2212957557739902, '6': 0.2400138130627313, '7': 0.23349745814993275, '8': 0.23533948869783466} | {'0': [4, 21], '1': [10, 17], '2': [0, 3, 6, 7, 11, 12, 13, 14, 16, 18, 20], '3': [1, 2, 8, 19, 22], '4': [5, 9, 15]} | {'explained_variance_ratio': [0.1326122288227982, 0.09781261998283984, 0.06114882474176896, 0.0563485415113117, 0.04126272407029772, 0.03981802941653405, 0.03617194721942563, 0.031602330472577864, 0.028211823194949883, 0.02761280536576864], 'cumulative_variance': [0.1326122288227982, 0.23042484880563802, 0.291573673547... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DManpa1-3[DManpa1-6][DXylpb1-2]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Xyl(b1-2)[Man(a1-3)][Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-D-Manp-(1→3)[α-D-Manp-(1→6)][β-D-Xylp-(1→2)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G59218ZX | WURCS=2.0/6,7,6/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a212h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-5-5-6/a4-b1_a6-g1_b4-c1_c2-d1_c3-e1_c6-f1 | DManpa1-3[DManpa1-6][DXylpb1-2]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Xyl(b1-2)[Man(a1-3)][Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-D-Manp-(1→3)[α-D-Manp-(1→6)][β-D-Xylp-(1→2)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G13181ZZ | WURCS=2.0/5,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a212h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-4-4-5/a4-b1_a6-g1_b4-c1_c2-d1_c3-e1_c6-f1 | null | null | Fucosylated N-Glycan;N-Glycan | {'MAN5-XYP8': {'2': {'phi': -82.28, 'psi': -125.03, 'strain': 1.753, 'linkage': '1-2'}, '3': {'phi': -76.91, 'psi': -91.35, 'strain': 0.971, 'linkage': '1-2'}, '4': {'phi': -91.55, 'psi': -92.97, 'strain': 1.473, 'linkage': '1-2'}, '5': {'phi': -105.76, 'psi': -95.7, 'strain': 2.408, 'linkage': '1-2'}, '6': {'phi': -90... | {'MAN5-XYP8': {'2': {'phi': -82.28, 'psi': -125.03, 'strain': 1.753, 'linkage': '1-2'}, '3': {'phi': -76.88, 'psi': -91.32, 'strain': 0.971, 'linkage': '1-2'}, '4': {'phi': -91.59, 'psi': -92.96, 'strain': 1.473, 'linkage': '1-2'}, '5': {'phi': -105.76, 'psi': -95.75, 'strain': 2.408, 'linkage': '1-2'}, '6': {'phi': -9... | {'MAN5-XYP8': {'2': {'phi': -82.28, 'psi': -125.03, 'strain': 1.753, 'linkage': '1-2'}, '3': {'phi': -76.91, 'psi': -91.35, 'strain': 0.971, 'linkage': '1-2'}, '4': {'phi': -91.55, 'psi': -92.97, 'strain': 1.473, 'linkage': '1-2'}, '5': {'phi': -105.76, 'psi': -95.7, 'strain': 2.408, 'linkage': '1-2'}, '6': {'phi': -90... | {'taxon_id': '3988', 'taxon_label': 'Ricinus communis (castor bean)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G75311GD'}]};{'taxon_id': '3843', 'taxon_label': 'Erythrina corallodendron', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glyca... | 7 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G75311GD', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491862163', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491862163', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '6023', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '19169', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+19169', 'database': 'Ca... | 1,482.76 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 281 | Saccharide | HexNAc(2)Hex(3)dHex(1)Pent(1) % 1188.42794808 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p((--2b1D-Xyl,p)--3a1D-Man,p)--6a1D-Man,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G08334GW', 'relationship': 'ancestor'};{'related_accession': 'G42032FN', 'relationship': 'ancestor'};{'related_accession': 'G49237TF', 'relationship': 'ancestor'};{'related_accession': 'G54509QP', 'relationship': 'ancestor'};{'related_accession': 'G42032FN', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00221/snfg.svg | ./torsion_data/GS00221_torsion_data.txt | {'Cluster 0': {'count': 8531, '3_2_phi_mean': -78.88, '3_2_psi_mean': 102.3, '4_3_phi_mean': -72.94, '4_3_psi_mean': -119.38, '5_4_phi_mean': -76.3, '5_4_psi_mean': 87.93, '6_5_phi_mean': -70.73, '6_5_psi_mean': -106.43, '8_5_phi_mean': -66.33, '8_5_psi_mean': 141.9, '7_6_phi_mean': -68.52, '7_6_psi_mean': 140.29, '3_2... | G43135VQ | GS00221 | LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-4DGlcpa1-OH | LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-4DGlcp | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-4)Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)-D-Glc | WURCS=2.0/4,7,6/[u2122h][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-2-4-3-4/a4-b1_b4-c1_c3-d1_d3-e1_d4-f1_f2-g1 | RES,1b:b-dglc-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:b-dgal-HEX-1:5,5b:b-dglc-HEX-1:5,6s:n-acetyl,7b:a-lgal-HEX-1:5|6:d,8b:b-dgal-HEX-1:5,9b:a-lgal-HEX-1:5|6:d,LIN,1:1o(4+1)2d,2:2d(2+1)3n,3:2o(4+1)4d,4:4o(3+1)5d,5:5d(2+1)6n,6:5o(3+1)7d,7:5o(4+1)8d,8:8o(2+1)9d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H](O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H]4NC(C)=O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1CO | null | 1,202.44 | {'motif': 'G00052MO', 'motif_label': 'Blood group H (type 2)'};{'motif': 'G00052MO', 'motif_label': 'Leb'};{'motif': 'G00052MO', 'motif_label': 'Lewis b'};{'motif': 'G00052MO', 'motif_label': 'Ley'};{'motif': 'G00058MO', 'motif_label': "I' antigen"};{'motif': 'G00058MO', 'motif_label': 'Type 2 LN2'};{'motif': 'G70519XK... | Fuc(a1-3);Fuc(a1-2) | {'Fuc': 2, 'Gal': 2, 'GlcNAc': 2, 'Glc': 1} | {'Hex': 3, 'HexNAc': 2, 'dHex': 2} | 19 | 21 | 34 | 12.261736 | {'Cluster 0': 28.43, 'Cluster 1': 27.56, 'Cluster 2': 20.95, 'Cluster 3': 18.49, 'Cluster 4': 4.56} | {'Cluster 0': 37.5929, 'Cluster 1': 20.8313, 'Cluster 2': 12.2154, 'Cluster 3': 10.7923, 'Cluster 4': 6.1827, 'Cluster 5': 4.7462, 'Cluster 6': 3.003, 'Cluster 7': 1.0999, 'Cluster 8': 0.6866, 'Cluster 9': 0.5033, 'Cluster 10': 0.3433, 'Cluster 11': 0.31, 'Cluster 12': 0.3033, 'Cluster 13': 0.2733, 'Cluster 14': 0.2633... | {'2': 0.4139762335541978, '3': 0.36805517894350964, '4': 0.2569264349083536, '5': 0.23467585751298564, '6': 0.24236551130522704, '7': 0.21734935272965034, '8': 0.23694938656286435} | {'0': [16, 21], '1': [0, 20], '2': [1, 2, 3, 5, 6, 7, 8, 10, 11, 12, 18, 19], '3': [9, 13, 14], '4': [4, 15, 17]} | {'explained_variance_ratio': [0.18681930238919672, 0.08012085185331429, 0.059301346199801125, 0.042506273630480026, 0.03741033529275524, 0.03570566790109852, 0.03501198561668283, 0.030419148790571143, 0.023564993082588623, 0.02097054339522413], 'cumulative_variance': [0.18681930238919672, 0.266940154242511, 0.326241500... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-4)Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-Glcp-(1→ | G59023DJ | WURCS=2.0/4,7,6/[a2122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-2-4-3-4/a4-b1_b4-c1_c3-d1_d3-e1_d4-f1_f2-g1 | LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-4)Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-Glcp-(1→ | G54020TT | WURCS=2.0/4,7,6/[a2122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-2-4-3-4/a4-b1_b4-c1_c3-d1_d3-e1_d4-f1_f2-g1 | null | null | null | {'GAL6-FUC7': {'2': {'phi': -63.76, 'psi': 144.42, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -71.04, 'psi': 135.55, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -68.71, 'psi': 146.39, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -67.51, 'psi': 138.59, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -54.... | {'GAL6-FUC7': {'2': {'phi': -63.76, 'psi': 144.42, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -71.0, 'psi': 135.53, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -68.74, 'psi': 146.42, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -67.52, 'psi': 138.57, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -54.7... | {'GAL6-FUC7': {'2': {'phi': -63.76, 'psi': 144.42, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -71.04, 'psi': 135.55, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -68.71, 'psi': 146.39, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -67.51, 'psi': 138.59, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -54.... | null | 7 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G92058BI', 'url': 'https://www.glygen.org/glycan/G92058BI'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G43135VQ', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G43135... | {'id': '491947778', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491947778', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G43135VQ', 'url': 'https://glytoucan.org/Structures/Glycans/G43135VQ', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G43135VQ', 'url': 'https://sandbox.... | 1,496.77 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 281 | Saccharide | HexNAc(2)Hex(3)dHex(2) % 1202.44359815 | freeEnd--?D-Glc--4b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis... | {'related_accession': 'G18809BK', 'relationship': 'ancestor'};{'related_accession': 'G21726WW', 'relationship': 'ancestor'};{'related_accession': 'G46910OC', 'relationship': 'ancestor'};{'related_accession': 'G79743GA', 'relationship': 'ancestor'};{'related_accession': 'G21726WW', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00222/snfg.svg | ./torsion_data/GS00222_torsion_data.txt | {'Cluster 0': {'count': 8681, '3_2_phi_mean': -79.74, '3_2_psi_mean': -116.29, '4_3_phi_mean': -73.87, '4_3_psi_mean': -119.54, '5_4_phi_mean': -86.1, '5_4_psi_mean': 83.14, '6_5_phi_mean': -67.28, '6_5_psi_mean': -109.31, '8_5_phi_mean': -68.66, '8_5_psi_mean': 142.15, '7_6_phi_mean': -72.51, '7_6_psi_mean': 137.59, '... | G62180QZ | GS00222 | LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGlcpa1-OH | LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGlcp | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-D-Glc | WURCS=2.0/4,7,6/[u2122h][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-2-4-3-4/a3-b1_b4-c1_c3-d1_d3-e1_d4-f1_f2-g1 | RES,1b:b-dglc-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:b-dgal-HEX-1:5,5b:b-dglc-HEX-1:5,6s:n-acetyl,7b:a-lgal-HEX-1:5|6:d,8b:b-dgal-HEX-1:5,9b:a-lgal-HEX-1:5|6:d,LIN,1:1o(3+1)2d,2:2d(2+1)3n,3:2o(4+1)4d,4:4o(3+1)5d,5:5d(2+1)6n,6:5o(3+1)7d,7:5o(4+1)8d,8:8o(2+1)9d, | O1C(O)[C@H](O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H](O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H]4NC(C)=O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H](O)[C@H]1CO | null | 1,202.44 | {'motif': 'G00052MO', 'motif_label': 'Blood group H (type 2)'};{'motif': 'G00052MO', 'motif_label': 'Leb'};{'motif': 'G00052MO', 'motif_label': 'Lewis b'};{'motif': 'G00052MO', 'motif_label': 'Ley'};{'motif': 'G00058MO', 'motif_label': "I' antigen"};{'motif': 'G00058MO', 'motif_label': 'Type 2 LN2'};{'motif': 'G70519XK... | Fuc(a1-3);Fuc(a1-2) | {'Fuc': 2, 'Gal': 2, 'GlcNAc': 2, 'Glc': 1} | {'Hex': 3, 'HexNAc': 2, 'dHex': 2} | 19 | 21 | 34 | 12.182224 | {'Cluster 0': 28.93, 'Cluster 1': 25.69, 'Cluster 2': 23.17, 'Cluster 3': 17.86, 'Cluster 4': 4.34} | {'Cluster 0': 65.3868, 'Cluster 1': 12.5054, 'Cluster 2': 4.8762, 'Cluster 3': 4.7795, 'Cluster 4': 3.633, 'Cluster 5': 1.9198, 'Cluster 6': 1.5132, 'Cluster 7': 1.4332, 'Cluster 8': 1.0832, 'Cluster 9': 0.7866, 'Cluster 10': 0.7599, 'Cluster 11': 0.4866, 'Cluster 12': 0.18, 'Cluster 13': 0.1433, 'Cluster 14': 0.1333, ... | {'2': 0.4125627511462373, '3': 0.3855557029015344, '4': 0.2836802114985058, '5': 0.22463134839079582, '6': 0.20441212853719976, '7': 0.20659695179017443, '8': 0.23838543395151562} | {'0': [3, 10, 16, 17], '1': [0, 7, 20], '2': [1, 2, 4, 6, 8, 9, 12, 14, 15, 19], '3': [5, 11, 13, 18], '4': []} | {'explained_variance_ratio': [0.17992966885876166, 0.07210440752204146, 0.06624683796911965, 0.04662290639893794, 0.04159119304671443, 0.04010767765382292, 0.03747953594176487, 0.031750421329025544, 0.027605857742982128, 0.02196680694224138], 'cumulative_variance': [0.17992966885876166, 0.2520340763808031, 0.3182809143... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGlcpa1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-α-D-Glcp-(1→ | G91851DR | WURCS=2.0/4,7,6/[a2122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-2-4-3-4/a3-b1_b4-c1_c3-d1_d3-e1_d4-f1_f2-g1 | LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGlcpb1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Glcp-(1→ | G14139BU | WURCS=2.0/4,7,6/[a2122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-2-4-3-4/a3-b1_b4-c1_c3-d1_d3-e1_d4-f1_f2-g1 | null | null | null | {'GAL6-FUC7': {'2': {'phi': -75.58, 'psi': 120.54, 'strain': 1.159, 'linkage': '1-2'}, '3': {'phi': -58.34, 'psi': 136.08, 'strain': 1.173, 'linkage': '1-2'}, '4': {'phi': -75.18, 'psi': 142.98, 'strain': 0.496, 'linkage': '1-2'}, '5': {'phi': -66.98, 'psi': 126.57, 'strain': 0.979, 'linkage': '1-2'}, '6': {'phi': -67.... | {'GAL6-FUC7': {'2': {'phi': -75.58, 'psi': 120.54, 'strain': 1.159, 'linkage': '1-2'}, '3': {'phi': -58.34, 'psi': 136.08, 'strain': 1.173, 'linkage': '1-2'}, '4': {'phi': -75.14, 'psi': 143.0, 'strain': 0.496, 'linkage': '1-2'}, '5': {'phi': -66.89, 'psi': 126.58, 'strain': 0.979, 'linkage': '1-2'}, '6': {'phi': -67.6... | {'GAL6-FUC7': {'2': {'phi': -75.58, 'psi': 120.54, 'strain': 1.159, 'linkage': '1-2'}, '3': {'phi': -58.34, 'psi': 136.08, 'strain': 1.173, 'linkage': '1-2'}, '4': {'phi': -75.18, 'psi': 142.98, 'strain': 0.496, 'linkage': '1-2'}, '5': {'phi': -66.98, 'psi': 126.57, 'strain': 0.979, 'linkage': '1-2'}, '6': {'phi': -67.... | null | 7 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G21561XX', 'url': 'https://www.glygen.org/glycan/G21561XX'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G62180QZ', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G62180... | {'id': '491956128', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491956128', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G62180QZ', 'url': 'https://glytoucan.org/Structures/Glycans/G62180QZ', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G62180QZ', 'url': 'https://sandbox.... | 1,496.77 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 281 | Saccharide | HexNAc(2)Hex(3)dHex(2) % 1202.44359815 | freeEnd--?D-Glc--3b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis... | {'related_accession': 'G18809BK', 'relationship': 'ancestor'};{'related_accession': 'G21726WW', 'relationship': 'ancestor'};{'related_accession': 'G46910OC', 'relationship': 'ancestor'};{'related_accession': 'G79743GA', 'relationship': 'ancestor'};{'related_accession': 'G21726WW', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00223/snfg.svg | ./torsion_data/GS00223_torsion_data.txt | {'Cluster 0': {'count': 12575, '3_2_phi_mean': -79.72, '3_2_psi_mean': -106.69, '4_3_phi_mean': -67.15, '4_3_psi_mean': -108.32, '9_3_phi_mean': -69.24, '9_3_psi_mean': 141.1, '5_4_phi_mean': -78.75, '5_4_psi_mean': 140.78, '6_5_phi_mean': -68.65, '6_5_psi_mean': -107.78, '8_5_phi_mean': -67.89, '8_5_psi_mean': 142.7, ... | G28814ND | GS00223 | LFucpa1-3[LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-3DGlcpa1-OH | LFucpa1-3[LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-3DGlcp | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-D-Glc | WURCS=2.0/4,8,7/[u2122h][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-3-4-3/a3-b1_b3-c1_b4-d1_d3-e1_e3-f1_e4-g1_g2-h1 | RES,1b:b-dglc-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:a-lgal-HEX-1:5|6:d,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:a-lgal-HEX-1:5|6:d,9b:b-dgal-HEX-1:5,10b:a-lgal-HEX-1:5|6:d,LIN,1:1o(3+1)2d,2:2d(2+1)3n,3:2o(3+1)4d,4:2o(4+1)5d,5:5o(3+1)6d,6:6d(2+1)7n,7:6o(3+1)8d,8:6o(4+1)9d,9:9o(2+1)10d, | O1C(O)[C@H](O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H](O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H]4NC(C)=O)[C@H]3O)[C@H](O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H]2NC... | null | 1,348.5 | {'motif': 'G00052MO', 'motif_label': 'Blood group H (type 2)'};{'motif': 'G00052MO', 'motif_label': 'Leb'};{'motif': 'G00052MO', 'motif_label': 'Lewis b'};{'motif': 'G00052MO', 'motif_label': 'Ley'};{'motif': 'G70519XK', 'motif_label': 'Blood group H (type 2)'};{'motif': 'G79535HZ', 'motif_label': 'Lex-Lex'} | Fuc(a1-3);Fuc(a1-2) | {'Fuc': 3, 'Gal': 2, 'GlcNAc': 2, 'Glc': 1} | {'Hex': 3, 'HexNAc': 2, 'dHex': 3} | 21 | 23 | 38 | 11.757151 | {'Cluster 0': 41.91, 'Cluster 1': 32.79, 'Cluster 2': 14.17, 'Cluster 3': 7.39, 'Cluster 4': 3.74} | {'Cluster 0': 32.1568, 'Cluster 1': 22.8444, 'Cluster 2': 10.8689, 'Cluster 3': 10.2723, 'Cluster 4': 6.366, 'Cluster 5': 3.3163, 'Cluster 6': 3.1264, 'Cluster 7': 2.4198, 'Cluster 8': 2.1365, 'Cluster 9': 2.0198, 'Cluster 10': 1.4999, 'Cluster 11': 1.1299, 'Cluster 12': 0.5966, 'Cluster 13': 0.3866, 'Cluster 14': 0.38... | {'2': 0.5295365119840257, '3': 0.4340853643026274, '4': 0.4134756389850589, '5': 0.4574743085098082, '6': 0.3563737504557375, '7': 0.34649878252001776, '8': 0.2679072978519352} | {'0': [8, 11, 19], '1': [1, 2, 3, 6, 10, 13, 14, 17, 18], '2': [4, 9, 16], '3': [5, 15], '4': [0, 7, 12]} | {'explained_variance_ratio': [0.19928208015426652, 0.13570247891920686, 0.08927335037278855, 0.040464168384545834, 0.03163338849438023, 0.028711313209586368, 0.02784864338475464, 0.026703062583303853, 0.022533193727360207, 0.016714249640016752], 'cumulative_variance': [0.19928208015426652, 0.33498455907347335, 0.424257... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-3[LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-3DGlcpa1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-α-D-Glcp-(1→ | G90412JJ | WURCS=2.0/4,8,7/[a2122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-3-4-3/a3-b1_b3-c1_b4-d1_d3-e1_e3-f1_e4-g1_g2-h1 | LFucpa1-3[LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-3DGlcpb1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Glcp-(1→ | G00506NQ | WURCS=2.0/4,8,7/[a2122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-3-4-3/a3-b1_b3-c1_b4-d1_d3-e1_e3-f1_e4-g1_g2-h1 | null | null | null | {'GAL6-FUC7': {'2': {'phi': -75.97, 'psi': 140.86, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -63.51, 'psi': 146.28, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -60.44, 'psi': 141.0, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -56.33, 'psi': 139.99, 'strain': 1.173, 'linkage': '1-2'}, '6': {'phi': -64.7... | {'GAL6-FUC7': {'2': {'phi': -75.97, 'psi': 140.86, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -63.42, 'psi': 146.26, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -60.41, 'psi': 140.97, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -56.33, 'psi': 140.03, 'strain': 1.49, 'linkage': '1-2'}, '6': {'phi': -64.8... | {'GAL6-FUC7': {'2': {'phi': -75.97, 'psi': 140.86, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -63.51, 'psi': 146.28, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -60.44, 'psi': 141.0, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -56.33, 'psi': 139.99, 'strain': 1.173, 'linkage': '1-2'}, '6': {'phi': -64.7... | null | 8 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G81252MZ', 'url': 'https://www.glygen.org/glycan/G81252MZ'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G28814ND', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G28814... | {'id': '491941542', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491941542', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G28814ND', 'url': 'https://glytoucan.org/Structures/Glycans/G28814ND', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G28814ND', 'url': 'https://sandbox.... | 1,670.86 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 246 | Saccharide | HexNAc(2)Hex(3)dHex(3) % 1348.50150702 | freeEnd--?D-Glc--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis... | {'related_accession': 'G18081HD', 'relationship': 'ancestor'};{'related_accession': 'G24583VU', 'relationship': 'ancestor'};{'related_accession': 'G40205MF', 'relationship': 'ancestor'};{'related_accession': 'G87276XX', 'relationship': 'ancestor'};{'related_accession': 'G18081HD', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00224/snfg.svg | ./torsion_data/GS00224_torsion_data.txt | {'Cluster 0': {'count': 13717, '3_2_phi_mean': -78.37, '3_2_psi_mean': 98.05, '4_3_phi_mean': -67.09, '4_3_psi_mean': -108.28, '9_3_phi_mean': -69.53, '9_3_psi_mean': 140.95, '5_4_phi_mean': -78.08, '5_4_psi_mean': 139.38, '6_5_phi_mean': -68.62, '6_5_psi_mean': -107.59, '8_5_phi_mean': -67.65, '8_5_psi_mean': 142.62, ... | G09245VW | GS00224 | LFucpa1-3[LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-4DGlcpa1-OH | LFucpa1-3[LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-4DGlcp | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-4)Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→4)-D-Glc | WURCS=2.0/4,8,7/[u2122h][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-3-4-3/a4-b1_b3-c1_b4-d1_d3-e1_e3-f1_e4-g1_g2-h1 | RES,1b:b-dglc-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:a-lgal-HEX-1:5|6:d,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:a-lgal-HEX-1:5|6:d,9b:b-dgal-HEX-1:5,10b:a-lgal-HEX-1:5|6:d,LIN,1:1o(4+1)2d,2:2d(2+1)3n,3:2o(3+1)4d,4:2o(4+1)5d,5:5o(3+1)6d,6:6d(2+1)7n,7:6o(3+1)8d,8:6o(4+1)9d,9:9o(2+1)10d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H](O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H]4NC(C)=O)[C@H]3O)[C@H](O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)... | null | 1,348.5 | {'motif': 'G00052MO', 'motif_label': 'Blood group H (type 2)'};{'motif': 'G00052MO', 'motif_label': 'Leb'};{'motif': 'G00052MO', 'motif_label': 'Lewis b'};{'motif': 'G00052MO', 'motif_label': 'Ley'};{'motif': 'G70519XK', 'motif_label': 'Blood group H (type 2)'};{'motif': 'G79535HZ', 'motif_label': 'Lex-Lex'} | Fuc(a1-3);Fuc(a1-2) | {'Fuc': 3, 'Gal': 2, 'GlcNAc': 2, 'Glc': 1} | {'Hex': 3, 'HexNAc': 2, 'dHex': 3} | 21 | 23 | 38 | 10.714152 | {'Cluster 0': 45.72, 'Cluster 1': 34.98, 'Cluster 2': 8.61, 'Cluster 3': 5.36, 'Cluster 4': 5.33} | {'Cluster 0': 58.4342, 'Cluster 1': 24.2276, 'Cluster 2': 4.1296, 'Cluster 3': 3.0197, 'Cluster 4': 2.5631, 'Cluster 5': 1.6732, 'Cluster 6': 1.5632, 'Cluster 7': 1.3199, 'Cluster 8': 1.1432, 'Cluster 9': 0.9399, 'Cluster 10': 0.39, 'Cluster 11': 0.26, 'Cluster 12': 0.1933, 'Cluster 13': 0.07, 'Cluster 14': 0.04, 'Clus... | {'2': 0.6329760222424603, '3': 0.6711992395812816, '4': 0.5554764879263128, '5': 0.46504734024308403, '6': 0.37495220361074355, '7': 0.375201131225482, '8': 0.3611727607913009} | {'0': [9], '1': [3, 6, 10, 11], '2': [1, 2, 4, 5, 8, 13, 14, 15], '3': [7, 12], '4': [0]} | {'explained_variance_ratio': [0.16135944022249038, 0.14583664944302072, 0.11278768826565672, 0.07855257720190624, 0.03864583633652156, 0.032444669756185075, 0.025934216069093928, 0.023241591515188766, 0.019874282277521593, 0.01775280244882947], 'cumulative_variance': [0.16135944022249038, 0.3071960896655111, 0.41998377... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-3[LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-4)Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→4)-α-D-Glcp-(1→ | G63213AP | WURCS=2.0/4,8,7/[a2122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-3-4-3/a4-b1_b3-c1_b4-d1_d3-e1_e3-f1_e4-g1_g2-h1 | LFucpa1-3[LFucpa1-3[LFucpa1-2DGalpb1-4]DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-4)Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→4)-β-D-Glcp-(1→ | G59121IT | WURCS=2.0/4,8,7/[a2122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-3-4-3/a4-b1_b3-c1_b4-d1_d3-e1_e3-f1_e4-g1_g2-h1 | null | null | null | {'GAL6-FUC7': {'2': {'phi': -76.6, 'psi': 136.24, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -70.24, 'psi': 133.53, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -69.53, 'psi': 145.54, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -66.45, 'psi': 142.52, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -67.3... | {'GAL6-FUC7': {'2': {'phi': -76.6, 'psi': 136.24, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -70.26, 'psi': 133.63, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -69.48, 'psi': 145.55, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -66.47, 'psi': 142.56, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -67.3... | {'GAL6-FUC7': {'2': {'phi': -76.6, 'psi': 136.24, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -70.24, 'psi': 133.53, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -69.53, 'psi': 145.54, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -66.45, 'psi': 142.52, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -67.3... | null | 8 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G11417QD', 'url': 'https://www.glygen.org/glycan/G11417QD'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G09245VW', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G09245... | {'id': '491932757', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491932757', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G09245VW', 'url': 'https://glytoucan.org/Structures/Glycans/G09245VW', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G09245VW', 'url': 'https://sandbox.... | 1,670.86 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 246 | Saccharide | HexNAc(2)Hex(3)dHex(3) % 1348.50150702 | freeEnd--?D-Glc--4b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis... | {'related_accession': 'G18081HD', 'relationship': 'ancestor'};{'related_accession': 'G24583VU', 'relationship': 'ancestor'};{'related_accession': 'G40205MF', 'relationship': 'ancestor'};{'related_accession': 'G87276XX', 'relationship': 'ancestor'};{'related_accession': 'G18081HD', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00225/snfg.svg | ./torsion_data/GS00225_torsion_data.txt | {'Cluster 0': {'count': 9813, '3_2_phi_mean': -74.97, '3_2_psi_mean': -101.09, '4_3_phi_mean': -72.9, '4_3_psi_mean': 103.65, '5_4_phi_mean': -79.55, '5_4_psi_mean': 92.03, '6_5_phi_mean': -74.24, '6_5_psi_mean': -124.08, '7_6_phi_mean': -78.65, '7_6_psi_mean': 102.57, '8_7_phi_mean': -73.57, '8_7_psi_mean': -124.41, '... | G58785SJ | GS00225 | DGalpNAcb1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpb1-OH | DGalpNAcb1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylp | GalNAc(b1-4)GlcA(b1-3)GalNAc(b1-4)GlcA(b1-3)GalNAc(b1-4)GlcA(b1-3)GalNAc(b1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl | β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-D-Xyl | WURCS=2.0/4,11,10/[u212h][a2112h-1b_1-5][a2122A-1b_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-2-3-4-3-4-3-4-3-4/a4-b1_b3-c1_c3-d1_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1_j4-k1 | RES,1b:x-dxyl-PEN-1:5,2b:b-dgal-HEX-1:5,3b:b-dgal-HEX-1:5,4b:b-dglc-HEX-1:5|-1:a,5b:b-dgal-HEX-1:5,6s:n-acetyl,7b:b-dglc-HEX-1:5|-1:a,8b:b-dgal-HEX-1:5,9s:n-acetyl,10b:b-dglc-HEX-1:5|-1:a,11b:b-dgal-HEX-1:5,12s:n-acetyl,13b:b-dglc-HEX-1:5|-1:a,14b:b-dgal-HEX-1:5,15s:n-acetyl,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3o(3+1)4d,4:4o... | O1C[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](C(=O)O)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O[C@@H]6O[C@H](C(=O)O)[C@@H](O[C@@H]7O[C@H](CO)[C@H](O)[C@H](O[C@@H]8O[C@H](C(=O)O)[C@@H](O[C@@H]9O[C@H](CO)[C@H](O)[C@H](O[C@@H]%10O[C@H](C(=O)O)[C@@H](O[C@@H]%11O[C@H](CO)[C@H](O)[C@H... | null | 1,990.6 | null | GalNAc(b1-4) | {'GalNAc': 4, 'GlcA': 4, 'Gal': 2, 'Xyl': 1} | {'Hex': 2, 'HexA': 4, 'HexNAc': 4, 'Pen': 1} | 1 | 5 | 6 | 14.225429 | {'Cluster 0': 32.71, 'Cluster 1': 22.63, 'Cluster 2': 17.82, 'Cluster 3': 16.91, 'Cluster 4': 9.93} | {'Cluster 0': 23.371, 'Cluster 1': 17.4549, 'Cluster 2': 17.3616, 'Cluster 3': 9.5924, 'Cluster 4': 7.4259, 'Cluster 5': 5.7694, 'Cluster 6': 2.7631, 'Cluster 7': 2.7531, 'Cluster 8': 2.5464, 'Cluster 9': 1.4265, 'Cluster 10': 1.3999, 'Cluster 11': 1.3865, 'Cluster 12': 1.2499, 'Cluster 13': 1.2332, 'Cluster 14': 1.086... | {'2': 0.3424117378133779, '3': 0.24424699108560982, '4': 0.25841069351098583, '5': 0.2899088693166193, '6': 0.2681855410942462, '7': 0.2547865863308463, '8': 0.2525652396292944} | {'0': [3, 20], '1': [10, 23, 29], '2': [0, 6, 12, 26], '3': [1, 2, 4, 7, 8, 9, 13, 14, 15, 16, 17, 18, 19, 22, 24, 25, 27, 28, 30, 31], '4': [5, 11, 21]} | {'explained_variance_ratio': [0.2401789028472689, 0.10390710833881171, 0.0658668711849862, 0.049066528534444966, 0.03423900668464925, 0.03071588450167598, 0.02961565867194578, 0.02571943344076228, 0.024231039749735304, 0.0204391848556567], 'cumulative_variance': [0.2401789028472689, 0.3440860111860806, 0.40995288237106... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | DGalpNAcb1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpa1-OH | GalNAc(b1-4)GlcA(b1-3)GalNAc(b1-4)GlcA(b1-3)GalNAc(b1-4)GlcA(b1-3)GalNAc(b1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl(a1- | β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-α-D-Xylp-(1→ | G84296DA | WURCS=2.0/4,11,10/[a212h-1a_1-5][a2112h-1b_1-5][a2122A-1b_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-2-3-4-3-4-3-4-3-4/a4-b1_b3-c1_c3-d1_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1_j4-k1 | DGalpNAcb1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpb1-OH | GalNAc(b1-4)GlcA(b1-3)GalNAc(b1-4)GlcA(b1-3)GalNAc(b1-4)GlcA(b1-3)GalNAc(b1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl(b1- | β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-β-D-Xylp-(1→ | null | WURCS=2.0/4,11,10/[a212h-1b_1-5][a2112h-1b_1-5][a2122A-1b_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-2-3-4-3-4-3-4-3-4/a4-b1_b3-c1_c3-d1_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1_j4-k1 | null | null | GAG | {'GAL3-GAL4': {'2': {'phi': -57.06, 'psi': -132.72, 'strain': 1.634, 'linkage': '1-3'}, '3': {'phi': -67.72, 'psi': -154.33, 'strain': 1.139, 'linkage': '1-3'}, '4': {'phi': -85.08, 'psi': -132.56, 'strain': 1.046, 'linkage': '1-3'}, '5': {'phi': -54.5, 'psi': -149.59, 'strain': 1.98, 'linkage': '1-3'}, '6': {'phi': -6... | {'GAL3-GAL4': {'2': {'phi': -57.06, 'psi': -132.72, 'strain': 1.634, 'linkage': '1-3'}, '3': {'phi': -67.77, 'psi': -154.4, 'strain': 1.139, 'linkage': '1-3'}, '4': {'phi': -85.03, 'psi': -132.61, 'strain': 1.046, 'linkage': '1-3'}, '5': {'phi': -54.49, 'psi': -149.56, 'strain': 1.98, 'linkage': '1-3'}, '6': {'phi': -6... | {} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00226/snfg.svg | ./torsion_data/GS00226_torsion_data.txt | {'Cluster 0': {'count': 7949, '3_2_phi_mean': 75.98, '3_2_psi_mean': 93.48, '4_3_phi_mean': -68.2, '4_3_psi_mean': -105.39, '5_4_phi_mean': 81.77, '5_4_psi_mean': 69.48, '6_4_phi_mean': -67.56, '6_4_psi_mean': 140.05, '3_2_phi_std': 12.61, '3_2_psi_std': 38.19, '4_3_phi_std': 7.58, '4_3_psi_std': 11.55, '5_4_phi_std': ... | G43735QZ | GS00226 | LFucpa1-2[DGalpNAca1-3]DGalpb1-3DGalpNAca1-3DGalpb1-OH | LFucpa1-2[DGalpNAca1-3]DGalpb1-3DGalpNAca1-3DGalp | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1-3)GalNAc(a1-3)Gal | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)-α-D-GalpNAc-(1→3)-D-Gal | WURCS=2.0/4,5,4/[u2112h][a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2/a3-b1_b3-c1_c2-d1_c3-e1 | RES,1b:b-dgal-HEX-1:5,2b:a-dgal-HEX-1:5,3s:n-acetyl,4b:b-dgal-HEX-1:5,5b:a-lgal-HEX-1:5|6:d,6b:a-dgal-HEX-1:5,7s:n-acetyl,LIN,1:1o(3+1)2d,2:2d(2+1)3n,3:2o(3+1)4d,4:4o(2+1)5d,5:4o(3+1)6d,6:6d(2+1)7n, | O1C(O)[C@H](O)[C@@H](O[C@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H]3O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO | null | 894.33 | null | Fuc(a1-2);GalNAc(a1-3) | {'GalNAc': 2, 'Gal': 2, 'Fuc': 1} | {'Hex': 2, 'HexNAc': 2, 'dHex': 1} | 1 | 5 | 6 | 11.937173 | {'Cluster 0': 26.49, 'Cluster 1': 20.48, 'Cluster 2': 18.85, 'Cluster 3': 17.27, 'Cluster 4': 16.9} | {'Cluster 0': 41.5258, 'Cluster 1': 23.2277, 'Cluster 2': 6.4394, 'Cluster 3': 5.6161, 'Cluster 4': 4.2329, 'Cluster 5': 3.8563, 'Cluster 6': 3.5063, 'Cluster 7': 2.7131, 'Cluster 8': 2.0265, 'Cluster 9': 1.7532, 'Cluster 10': 1.2132, 'Cluster 11': 1.0366, 'Cluster 12': 0.9032, 'Cluster 13': 0.5799, 'Cluster 14': 0.556... | {'2': 0.2528500766307211, '3': 0.25019396830277796, '4': 0.23069739205280212, '5': 0.2344775368446844, '6': 0.2325270717036578, '7': 0.23049724599150484, '8': 0.2174285418594578} | {'0': [3, 7, 13, 15, 19], '1': [1, 5, 9, 14], '2': [2, 6, 16], '3': [4, 8, 10, 11, 17, 18], '4': [0, 12]} | {'explained_variance_ratio': [0.11878674637646944, 0.10426987558305235, 0.0689461858963053, 0.053742574386370597, 0.04607819673338892, 0.04349578140808817, 0.038376417341055895, 0.030329352016405697, 0.02773268015054054, 0.024302293838269415], 'cumulative_variance': [0.11878674637646944, 0.2230566219595218, 0.292002807... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-2[DGalpNAca1-3]DGalpb1-3DGalpNAca1-3DGalpa1-OH | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1-3)GalNAc(a1-3)Gal(a1- | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)-α-D-GalpNAc-(1→3)-α-D-Galp-(1→ | G69291KD | WURCS=2.0/4,5,4/[a2112h-1a_1-5][a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2/a3-b1_b3-c1_c2-d1_c3-e1 | LFucpa1-2[DGalpNAca1-3]DGalpb1-3DGalpNAca1-3DGalpb1-OH | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1-3)GalNAc(a1-3)Gal(b1- | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)-α-D-GalpNAc-(1→3)-β-D-Galp-(1→ | G94963GC | WURCS=2.0/3,5,4/[a2112h-1b_1-5][a2112h-1a_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-1-3-2/a3-b1_b3-c1_c2-d1_c3-e1 | null | null | O-Glycan | {'GAL4-FUC6': {'2': {'phi': -69.19, 'psi': 141.04, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -66.84, 'psi': 133.76, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -70.03, 'psi': 125.47, 'strain': 1.159, 'linkage': '1-2'}, '5': {'phi': -64.43, 'psi': 131.56, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -69.... | {'GAL4-FUC6': {'2': {'phi': -69.19, 'psi': 141.04, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -66.81, 'psi': 133.77, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -70.03, 'psi': 125.48, 'strain': 1.159, 'linkage': '1-2'}, '5': {'phi': -64.39, 'psi': 131.58, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -68.... | {'GAL4-FUC6': {'2': {'phi': -69.19, 'psi': 141.04, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -66.84, 'psi': 133.76, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -70.03, 'psi': 125.47, 'strain': 1.159, 'linkage': '1-2'}, '5': {'phi': -64.43, 'psi': 131.56, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -69.... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00228/snfg.svg | ./torsion_data/GS00228_torsion_data.txt | {'Cluster 0': {'count': 10838, '3_2_phi_mean': -79.19, '3_2_psi_mean': -126.83, '4_3_phi_mean': -76.84, '4_3_psi_mean': -53.23, '5_4_phi_mean': 70.03, '5_4_psi_mean': 65.42, '9_4_phi_mean': 70.37, '9_4_psi_mean': 119.85, '6_5_phi_mean': -82.9, '6_5_psi_mean': -17.5, '7_5_phi_mean': -71.41, '7_5_psi_mean': -74.89, '8_7_... | G19668FQ | GS00228 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/5,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-4-2-5-2/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h2-i1_h6-k1_i4-j1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:b-dglc-HEX-1:5,17s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[... | A4G2GlcNAc2 | 2,046.75 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Gal(b1-4);GlcNAc(b1-6);GlcNAc(b1-4) | {'GlcNAc': 6, 'Man': 3, 'Gal': 2} | {'Hex': 5, 'HexNAc': 6} | 37 | 35 | 56 | 13.340756 | {'Cluster 0': 27.09, 'Cluster 1': 25.93, 'Cluster 2': 23.3, 'Cluster 3': 13.81, 'Cluster 4': 9.87} | {'Cluster 0': 14.1361, 'Cluster 1': 12.0513, 'Cluster 2': 11.0314, 'Cluster 3': 9.2316, 'Cluster 4': 7.6567, 'Cluster 5': 7.3843, 'Cluster 6': 6.4819, 'Cluster 7': 5.3945, 'Cluster 8': 5.072, 'Cluster 9': 2.6772, 'Cluster 10': 2.5472, 'Cluster 11': 2.3073, 'Cluster 12': 2.1348, 'Cluster 13': 2.1023, 'Cluster 14': 1.949... | {'2': 0.3820283447447378, '3': 0.3935022390819391, '4': 0.37171731948264536, '5': 0.36666412483620137, '6': 0.2893467625843149, '7': 0.2725916382528964, '8': 0.29658470484297783} | {'0': [0, 12, 14], '1': [8, 9, 23, 26], '2': [3, 15, 22, 25], '3': [2, 4, 7, 11, 13, 17, 18, 20], '4': [1, 5, 6, 10, 16, 19, 21, 24]} | {'explained_variance_ratio': [0.16631046581466113, 0.08699135643217336, 0.07590673910268948, 0.05787587449381868, 0.05279061597336118, 0.03827335951791274, 0.03584025173209857, 0.031119658866683143, 0.02358123821236333, 0.021533706913002663], 'cumulative_variance': [0.16631046581466113, 0.2533018222468345, 0.3292085613... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G24124EW | WURCS=2.0/5,11,10/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-4-2-5-2/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h2-i1_h6-k1_i4-j1 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G99645NK | WURCS=2.0/4,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-1-3-1-4-1/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h2-i1_h6-k1_i4-j1 | A4G2GlcNAc2 | null | N-Glycan | {'MAN5-NAG7': {'2': {'phi': -73.14, 'psi': -78.17, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -94.69, 'psi': -70.42, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -80.1, 'psi': -77.91, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -72.46, 'psi': -138.1, 'strain': 2.369, 'linkage': '1-2'}, '6': {'phi': -99.45... | {'MAN5-NAG7': {'2': {'phi': -73.14, 'psi': -78.17, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -94.67, 'psi': -70.42, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -80.13, 'psi': -77.89, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -72.54, 'psi': -138.03, 'strain': 2.369, 'linkage': '1-2'}, '6': {'phi': -99.... | {'MAN5-NAG7': {'2': {'phi': -73.14, 'psi': -78.17, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -94.69, 'psi': -70.42, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -80.1, 'psi': -77.91, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -72.46, 'psi': -138.1, 'strain': 2.369, 'linkage': '1-2'}, '6': {'phi': -99.45... | null | 11 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G19668FQ', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491937351', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491937351', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G19668FQ', 'url': 'https://glytoucan.org/Structures/Glycans/G19668FQ', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G19668FQ', 'url': 'https://sandbox.... | 2,537.3 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 179 | Saccharide | HexNAc(6)Hex(5) % 2046.75091783 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G19504QQ', 'relationship': 'ancestor'};{'related_accession': 'G43769HG', 'relationship': 'ancestor'};{'related_accession': 'G99305GQ', 'relationship': 'ancestor'};{'related_accession': 'G43769HG', 'relationship': 'basecomposition'};{'related_accession': 'G19504QQ', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00229/snfg.svg | ./torsion_data/GS00229_torsion_data.txt | {'Cluster 0': {'count': 10764, '3_2_phi_mean': -77.48, '3_2_psi_mean': -38.6, '9_2_phi_mean': -75.28, '9_2_psi_mean': 112.74, '4_3_phi_mean': -74.31, '4_3_psi_mean': -119.33, '5_4_phi_mean': -83.26, '5_4_psi_mean': 89.91, '6_5_phi_mean': -73.97, '6_5_psi_mean': -120.09, '7_6_phi_mean': -81.51, '7_6_psi_mean': 90.03, '8... | G48791KW | GS00229 | DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-3]DGalpNAcb1-OH | DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-3]DGalpNAc | Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-3)]GalNAc | β-D-Galp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/3,8,7/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2-3-2/a3-b1_a6-c1_c4-d1_d3-e1_e4-f1_f3-g1_g4-h1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:b-dglc-HEX-1:5,5s:n-acetyl,6b:b-dgal-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dgal-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:1o(6+1)4d,4:4d(2+1)5n,5:4o(4+1)6d,6:6o(3+1)7d,7:7d(2+1)8n,8:7o(4+1)9d,9:9o(3+1)10d,10:10d(2... | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O[C@@H]6O[C@H](CO)[C@@H](O[C@@H]7O[C@H](CO)[C@H](O)[C@H](O)[C@H]7O)[C@H](O)[C@H]6NC(C)=O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C... | null | 1,478.54 | {'motif': 'G46055MA', 'motif_label': "I' antigen"};{'motif': 'G00034MO', 'motif_label': 'O-Glycan core 2 fuzzy'} | Gal(b1-3);Gal(b1-4) | {'Gal': 4, 'GlcNAc': 3, 'GalNAc': 1} | {'Hex': 4, 'HexNAc': 4} | 26 | 26 | 41 | 13.363012 | {'Cluster 0': 35.88, 'Cluster 1': 23.09, 'Cluster 2': 20.47, 'Cluster 3': 11.51, 'Cluster 4': 9.05} | {'Cluster 0': 24.7275, 'Cluster 1': 21.1512, 'Cluster 2': 15.5484, 'Cluster 3': 13.8253, 'Cluster 4': 11.8755, 'Cluster 5': 2.6931, 'Cluster 6': 2.1631, 'Cluster 7': 2.0598, 'Cluster 8': 1.4399, 'Cluster 9': 0.8899, 'Cluster 10': 0.6966, 'Cluster 11': 0.6466, 'Cluster 12': 0.4633, 'Cluster 13': 0.4533, 'Cluster 14': 0.... | {'2': 0.3780969612817608, '3': 0.21469763739797298, '4': 0.24056915628965259, '5': 0.26991786313101557, '6': 0.2089226755817003, '7': 0.22234624572281844, '8': 0.21442730009971897} | {'0': [0, 13, 19], '1': [1, 2, 3, 4, 6, 7, 9, 11, 12, 14, 15, 16, 18, 20, 23, 25, 26], '2': [8], '3': [5, 10, 17, 21, 24], '4': [22]} | {'explained_variance_ratio': [0.21756804228978538, 0.10926160295296658, 0.07269562201830239, 0.044843684761715276, 0.040589880010217565, 0.03663031993121678, 0.025125221384512886, 0.023373929003660057, 0.022645823661180044, 0.021251183353211366], 'cumulative_variance': [0.21756804228978538, 0.32682964524275193, 0.39952... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-3]DGalpNAca1-OH | Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-3)]GalNAc(a1- | β-D-Galp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G54706BB | WURCS=2.0/3,8,7/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2-3-2/a3-b1_a6-c1_c4-d1_d3-e1_e4-f1_f3-g1_g4-h1 | DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-3]DGalpNAcb1-OH | Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-3)]GalNAc(b1- | β-D-Galp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G79878OX | WURCS=2.0/3,8,7/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2-3-2/a3-b1_a6-c1_c4-d1_d3-e1_e4-f1_f3-g1_g4-h1 | null | null | O-Glycan | {'GLC2-GAL9': {'2': {'phi': -72.7, 'psi': -108.68, 'strain': 0.136, 'linkage': '1-3'}, '3': {'phi': -67.32, 'psi': -114.81, 'strain': 0.545, 'linkage': '1-3'}, '4': {'phi': -62.25, 'psi': -100.63, 'strain': 0.087, 'linkage': '1-3'}, '5': {'phi': -62.79, 'psi': -101.89, 'strain': 0.087, 'linkage': '1-3'}, '6': {'phi': -... | {'GLC2-GAL9': {'2': {'phi': -72.7, 'psi': -108.68, 'strain': 0.136, 'linkage': '1-3'}, '3': {'phi': -67.26, 'psi': -114.84, 'strain': 0.545, 'linkage': '1-3'}, '4': {'phi': -62.26, 'psi': -100.65, 'strain': 0.087, 'linkage': '1-3'}, '5': {'phi': -62.76, 'psi': -101.87, 'strain': 0.087, 'linkage': '1-3'}, '6': {'phi': -... | {'GLC2-GAL9': {'2': {'phi': -72.7, 'psi': -108.68, 'strain': 0.136, 'linkage': '1-3'}, '3': {'phi': -67.32, 'psi': -114.81, 'strain': 0.545, 'linkage': '1-3'}, '4': {'phi': -62.25, 'psi': -100.63, 'strain': 0.087, 'linkage': '1-3'}, '5': {'phi': -62.79, 'psi': -101.89, 'strain': 0.087, 'linkage': '1-3'}, '6': {'phi': -... | null | 8 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G54706BB', 'url': 'https://www.glygen.org/glycan/G54706BB'}, {'database': 'Subsumption', 'id': 'G60799ZL', 'url': 'https://www.glygen.org/glycan/G60799ZL'}], 'common_name': 'Human', 'glygen_name... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 2'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G48791KW', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491950168', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491950168', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G48791KW', 'url': 'https://glytoucan.org/Structures/Glycans/G48791KW', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G48791KW', 'url': 'https://sandbox.... | 1,842.95 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 246 | Saccharide | HexNAc(4)Hex(4) % 1478.53934912 | freeEnd--?D-GalNAc(--3b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000004', 'name': 'i ant... | {'related_accession': 'G17782WA', 'relationship': 'ancestor'};{'related_accession': 'G72787SB', 'relationship': 'ancestor'};{'related_accession': 'G75216TK', 'relationship': 'ancestor'};{'related_accession': 'G72787SB', 'relationship': 'basecomposition'};{'related_accession': 'G75216TK', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00230/snfg.svg | ./torsion_data/GS00230_torsion_data.txt | {'Cluster 0': {'count': 9983, '3_2_phi_mean': -78.19, '3_2_psi_mean': -128.91, '4_3_phi_mean': -77.37, '4_3_psi_mean': -122.55, '5_4_phi_mean': 72.85, '5_4_psi_mean': -66.94, '8_4_phi_mean': 69.21, '8_4_psi_mean': 116.07, '6_5_phi_mean': 71.77, '6_5_psi_mean': -42.16, '7_5_phi_mean': 71.86, '7_5_psi_mean': -110.36, '9_... | G02799ME | GS00230 | DGalpNAcb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpNAcb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | GalNAc(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-GalpNAc-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/5,10,9/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-5-2-4-4-4/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h3-i1_h6-j1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10s:n-acetyl,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:a-dman-HEX-1:5,14b:a-dman-HEX-1:5,15b:a-dman-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6o(2... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H](O)[C@H](O[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H]4O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](C... | null | 1,843.67 | null | Man(a1-3);Man(a1-6);GalNAc(b1-4);GlcNAc(b1-4) | {'Man': 5, 'GlcNAc': 4, 'GalNAc': 1} | {'Hex': 5, 'HexNAc': 5} | 1 | 5 | 6 | 13.728277 | {'Cluster 0': 24.96, 'Cluster 1': 22.62, 'Cluster 2': 19.12, 'Cluster 3': 17.2, 'Cluster 4': 16.1} | {'Cluster 0': 12.7962, 'Cluster 1': 11.8913, 'Cluster 2': 9.2341, 'Cluster 3': 7.3243, 'Cluster 4': 6.5493, 'Cluster 5': 6.1994, 'Cluster 6': 5.192, 'Cluster 7': 4.8695, 'Cluster 8': 4.5395, 'Cluster 9': 4.3996, 'Cluster 10': 3.5296, 'Cluster 11': 3.4872, 'Cluster 12': 2.9447, 'Cluster 13': 2.5397, 'Cluster 14': 2.1623... | {'2': 0.3017384093211989, '3': 0.34048777231748806, '4': 0.3357845488990622, '5': 0.26054706475187717, '6': 0.2489569176397475, '7': 0.2490054897997792, '8': 0.2619711199875632} | {'0': [2, 7, 8, 16, 20, 21], '1': [4, 12, 19, 23], '2': [0, 9, 10, 17, 22, 27], '3': [6, 11, 24, 25, 26, 28], '4': [1, 3, 5, 13, 14, 15, 18]} | {'explained_variance_ratio': [0.12365775871839245, 0.1064470790266922, 0.08014047141046941, 0.07645014274150554, 0.05055252841690183, 0.049727115077504255, 0.03949567035493475, 0.028397077754778625, 0.023176560773436283, 0.01740442266223539], 'cumulative_variance': [0.12365775871839245, 0.23010483774508467, 0.310245309... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpNAcb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | GalNAc(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-GalpNAc-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G73417TX | WURCS=2.0/5,10,9/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-5-2-4-4-4/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h3-i1_h6-j1 | DGalpNAcb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | GalNAc(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-GalpNAc-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G12110NN | WURCS=2.0/4,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-1-2-3-1-4-1-3-3-3/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h3-i1_h6-j1 | null | null | N-Glycan | {'MAN8-NAG10': {'2': {'phi': -84.2, 'psi': -77.78, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -73.61, 'psi': -77.74, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -101.21, 'psi': -75.86, 'strain': 0.927, 'linkage': '1-2'}, '5': {'phi': -99.03, 'psi': -53.91, 'strain': 1.667, 'linkage': '1-2'}, '6': {'phi': -76.... | {'MAN8-NAG10': {'2': {'phi': -84.2, 'psi': -77.78, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -73.63, 'psi': -77.71, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -101.15, 'psi': -75.9, 'strain': 0.927, 'linkage': '1-2'}, '5': {'phi': -99.02, 'psi': -53.92, 'strain': 1.667, 'linkage': '1-2'}, '6': {'phi': -76.1... | {'MAN8-NAG10': {'2': {'phi': -84.2, 'psi': -77.78, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -73.61, 'psi': -77.74, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -101.21, 'psi': -75.86, 'strain': 0.927, 'linkage': '1-2'}, '5': {'phi': -99.03, 'psi': -53.91, 'strain': 1.667, 'linkage': '1-2'}, '6': {'phi': -76.... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00231/snfg.svg | ./torsion_data/GS00231_torsion_data.txt | {'Cluster 0': {'count': 13579, '3_2_phi_mean': -78.24, '3_2_psi_mean': -129.23, '4_3_phi_mean': -77.52, '4_3_psi_mean': -123.24, '5_4_phi_mean': 72.35, '5_4_psi_mean': -79.7, '8_4_phi_mean': 69.64, '8_4_psi_mean': 115.84, '6_5_phi_mean': -79.42, '6_5_psi_mean': -10.07, '7_5_phi_mean': -79.16, '7_5_psi_mean': -74.95, '9... | G67878HD | GS00231 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/5,10,9/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-4-2-2/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h2-i1_h6-j1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dglc-HEX-1:5,16s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@H](O)[C@@H]4O[C@... | A4G1 | 1,884.7 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | GlcNAc(b1-2);Gal(b1-4);GlcNAc(b1-6);GlcNAc(b1-4) | {'GlcNAc': 6, 'Man': 3, 'Gal': 1} | {'Hex': 4, 'HexNAc': 6} | 34 | 32 | 51 | 13.545271 | {'Cluster 0': 33.94, 'Cluster 1': 28.01, 'Cluster 2': 20.84, 'Cluster 3': 10.81, 'Cluster 4': 6.4} | {'Cluster 0': 17.2408, 'Cluster 1': 15.5709, 'Cluster 2': 11.4989, 'Cluster 3': 9.6715, 'Cluster 4': 8.1867, 'Cluster 5': 5.3395, 'Cluster 6': 4.6095, 'Cluster 7': 4.3246, 'Cluster 8': 3.9296, 'Cluster 9': 3.7396, 'Cluster 10': 3.3197, 'Cluster 11': 3.2722, 'Cluster 12': 1.9198, 'Cluster 13': 1.3249, 'Cluster 14': 1.16... | {'2': 0.3939978930938886, '3': 0.36527324468094235, '4': 0.321597508424376, '5': 0.288402162026132, '6': 0.2110945620224331, '7': 0.2432192456369014, '8': 0.26190374436295993} | {'0': [4, 14, 16, 20, 23], '1': [0, 3, 5, 10, 15, 24], '2': [1, 13, 27], '3': [2, 6, 7, 12, 18, 19, 21, 26], '4': [8, 9, 11, 17, 22, 25]} | {'explained_variance_ratio': [0.15947109538754167, 0.09300730167092627, 0.07691017364803668, 0.05666322307629467, 0.05404461437524662, 0.04433559718749388, 0.03254616605070207, 0.028215378955119795, 0.024217235838725395, 0.01986395713739282], 'cumulative_variance': [0.15947109538754167, 0.252478397058468, 0.32938857070... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G10536EY | WURCS=2.0/5,10,9/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-4-2-2/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h2-i1_h6-j1 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G08863NS | WURCS=2.0/4,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-1-3-1-1/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h2-i1_h6-j1 | A4G1 | null | N-Glycan | {'MAN5-NAG7': {'2': {'phi': -83.27, 'psi': -82.65, 'strain': 0.373, 'linkage': '1-2'}, '3': {'phi': -91.15, 'psi': -76.64, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -82.59, 'psi': -63.65, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -70.45, 'psi': -77.76, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -70.8... | {'MAN5-NAG7': {'2': {'phi': -83.27, 'psi': -82.65, 'strain': 0.373, 'linkage': '1-2'}, '3': {'phi': -91.12, 'psi': -76.67, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -82.62, 'psi': -63.64, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -70.42, 'psi': -77.76, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -70.9... | {'MAN5-NAG7': {'2': {'phi': -83.27, 'psi': -82.65, 'strain': 0.373, 'linkage': '1-2'}, '3': {'phi': -91.15, 'psi': -76.64, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -82.59, 'psi': -63.65, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -70.45, 'psi': -77.76, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -70.8... | null | 10 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G67878HD', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491958662', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491958662', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G67878HD', 'url': 'https://glytoucan.org/Structures/Glycans/G67878HD', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G67878HD', 'url': 'https://sandbox.... | 2,333.2 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 196 | Saccharide | HexNAc(6)Hex(4) % 1884.69809433 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p)--6b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G11853YG', 'relationship': 'ancestor'};{'related_accession': 'G25079LO', 'relationship': 'ancestor'};{'related_accession': 'G74562EE', 'relationship': 'ancestor'};{'related_accession': 'G25079LO', 'relationship': 'basecomposition'};{'related_accession': 'G11853YG', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00232/snfg.svg | ./torsion_data/GS00232_torsion_data.txt | {'Cluster 0': {'count': 10336, '3_2_phi_mean': -74.58, '3_2_psi_mean': -122.58, '4_3_phi_mean': -82.44, '4_3_psi_mean': 91.18, '5_4_phi_mean': -73.12, '5_4_psi_mean': -119.26, '3_2_phi_std': 15.7, '3_2_psi_std': 45.79, '4_3_phi_std': 16.28, '4_3_psi_std': 20.61, '5_4_phi_std': 12.72, '5_4_psi_std': 20.41}, 'Cluster 1':... | G16438UK | GS00232 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-3DGalpNAca1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-3DGalpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-3)GalNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→3)-D-GalNAc | WURCS=2.0/4,5,4/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4/a3-b1_b3-c1_c4-d1_d3-e2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:b-dglc-HEX-1:5,5s:n-acetyl,6b:b-dgal-HEX-1:5,7b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,8s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(3+1)4d,4:4d(2+1)5n,5:4o(4+1)6d,6:6o(3+2)7d,7:7d(5+1)8n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@]5(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O5)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H]2O)[C@@H](O)[C@H]1CO | null | 1,039.37 | {'motif': 'G00065MO', 'motif_label': 'Polysialic acid'};{'motif': 'G00032MO', 'motif_label': 'O-Glycan core 1 fuzzy'} | Neu5Ac(a2-3) | {'Gal': 2, 'Neu5Ac': 1, 'GlcNAc': 1, 'GalNAc': 1} | {'Hex': 2, 'HexNAc': 2, 'Neu5Ac': 1} | 19 | 19 | 29 | 11.651735 | {'Cluster 0': 25.84, 'Cluster 1': 23.56, 'Cluster 2': 20.16, 'Cluster 3': 19.92, 'Cluster 4': 10.52} | {'Cluster 0': 31.6493, 'Cluster 1': 20.168, 'Cluster 2': 16.2859, 'Cluster 3': 10.7939, 'Cluster 4': 5.7419, 'Cluster 5': 4.3921, 'Cluster 6': 2.4823, 'Cluster 7': 1.5573, 'Cluster 8': 1.4849, 'Cluster 9': 1.4599, 'Cluster 10': 1.2324, 'Cluster 11': 0.8074, 'Cluster 12': 0.6799, 'Cluster 13': 0.45, 'Cluster 14': 0.3475... | {'2': 0.5375479378883731, '3': 0.2685803381557113, '4': 0.29356751683045634, '5': 0.2932974472675398, '6': 0.25960054806868366, '7': 0.2642820830354374, '8': 0.24710509590601498} | {'0': [12, 17], '1': [0, 8, 13], '2': [4, 9], '3': [1, 2, 3, 5, 6, 7, 10, 11, 14, 16, 18], '4': [15]} | {'explained_variance_ratio': [0.1994599021687328, 0.11073735346503816, 0.08281517852364932, 0.048269443298898165, 0.03807589977023767, 0.03597188973769409, 0.02733678373907014, 0.024615031070128024, 0.01895124967788726, 0.017615259273763232], 'cumulative_variance': [0.1994599021687328, 0.310197255633771, 0.393012434157... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-3DGalpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-3)GalNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→3)-α-D-GalpNAc-(1→ | G57144YM | WURCS=2.0/4,5,4/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4/a3-b1_b3-c1_c4-d1_d3-e2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-3DGalpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-3)GalNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→3)-β-D-GalpNAc-(1→ | G52071EY | WURCS=2.0/4,5,4/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4/a3-b1_b3-c1_c4-d1_d3-e2 | null | null | O-Glycan | {'A2G2-GAL3': {'2': {'phi': -78.7, 'psi': -140.84, 'strain': 0.582, 'linkage': '1-3'}, '3': {'phi': -76.24, 'psi': -141.67, 'strain': 0.582, 'linkage': '1-3'}, '4': {'phi': -78.32, 'psi': -143.14, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -80.82, 'psi': -152.04, 'strain': 0.668, 'linkage': '1-3'}, '6': {'phi': -... | {'A2G2-GAL3': {'2': {'phi': -78.7, 'psi': -140.84, 'strain': 0.582, 'linkage': '1-3'}, '3': {'phi': -76.26, 'psi': -141.69, 'strain': 0.582, 'linkage': '1-3'}, '4': {'phi': -78.32, 'psi': -143.1, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -80.89, 'psi': -152.03, 'strain': 0.668, 'linkage': '1-3'}, '6': {'phi': -8... | {'A2G2-GAL3': {'2': {'phi': -78.7, 'psi': -140.84, 'strain': 0.582, 'linkage': '1-3'}, '3': {'phi': -76.24, 'psi': -141.67, 'strain': 0.582, 'linkage': '1-3'}, '4': {'phi': -78.32, 'psi': -143.14, 'strain': 0.582, 'linkage': '1-3'}, '5': {'phi': -80.82, 'psi': -152.04, 'strain': 0.668, 'linkage': '1-3'}, '6': {'phi': -... | null | 5 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G57144YM', 'url': 'https://www.glygen.org/glycan/G57144YM'}, {'database': 'Subsumption', 'id': 'G58793GF', 'url': 'https://www.glygen.org/glycan/G58793GF'}], 'common_name': 'Human', 'glygen_name... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 1'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G16438UK', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491843449', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491843449', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G16438UK', 'url': 'https://glytoucan.org/Structures/Glycans/G16438UK', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G16438UK', 'url': 'https://sandbox.... | 1,305.67 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 393 | Saccharide | HexNAc(2)Hex(2)NeuAc(1) % 1039.37037354 | freeEnd--?D-GalNAc--3b1D-Gal,p--3b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G26091TF', 'relationship': 'ancestor'};{'related_accession': 'G29404FC', 'relationship': 'ancestor'};{'related_accession': 'G37223NW', 'relationship': 'ancestor'};{'related_accession': 'G39393JJ', 'relationship': 'ancestor'};{'related_accession': 'G43827XX', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00233/snfg.svg | ./torsion_data/GS00233_torsion_data.txt | {'Cluster 0': {'count': 14486, '3_2_phi_mean': -77.73, '3_2_psi_mean': -129.07, '4_3_phi_mean': -76.84, '4_3_psi_mean': -121.81, '5_4_phi_mean': 70.65, '5_4_psi_mean': -88.85, '9_4_phi_mean': 71.54, '9_4_psi_mean': 106.17, '6_5_phi_mean': -72.28, '6_5_psi_mean': -22.38, '7_5_phi_mean': -77.7, '7_5_psi_mean': 75.18, '8_... | G62776EK | GS00233 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6][DGlcpNAcb1-4]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6][DGlcpNAcb1-4]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-4)][GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)][β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/5,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-4-2-2-2/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h2-i1_h4-j1_h6-k1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dglc-HEX-1:5,16s:n-acetyl,17b:b-dglc-HEX-1:5,18s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(4+1)... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@... | null | 2,087.78 | null | GlcNAc(b1-2);Gal(b1-4);GlcNAc(b1-6);GlcNAc(b1-4) | {'GlcNAc': 7, 'Man': 3, 'Gal': 1} | {'Hex': 4, 'HexNAc': 7} | 1 | 5 | 6 | 13.350317 | {'Cluster 0': 36.21, 'Cluster 1': 21.76, 'Cluster 2': 17.9, 'Cluster 3': 12.82, 'Cluster 4': 11.31} | {'Cluster 0': 16.4934, 'Cluster 1': 11.0489, 'Cluster 2': 8.4217, 'Cluster 3': 6.9993, 'Cluster 4': 6.4469, 'Cluster 5': 6.0819, 'Cluster 6': 5.9594, 'Cluster 7': 5.9119, 'Cluster 8': 5.6044, 'Cluster 9': 4.802, 'Cluster 10': 4.2596, 'Cluster 11': 3.3047, 'Cluster 12': 2.8097, 'Cluster 13': 2.2073, 'Cluster 14': 2.0398... | {'2': 0.40989704295323653, '3': 0.4032583473595409, '4': 0.45423863998424224, '5': 0.38819045083940906, '6': 0.38208350104109395, '7': 0.3732822210674955, '8': 0.32133832481626534} | {'0': [1, 5, 14, 16, 19], '1': [9, 21, 24], '2': [0, 3, 8, 10, 15, 20, 26], '3': [7, 11, 13, 23], '4': [2, 4, 6, 12, 17, 18, 22, 25]} | {'explained_variance_ratio': [0.15184322143471404, 0.10259958536015457, 0.07719318171967891, 0.058096083539593994, 0.04823255273617758, 0.04396269574852175, 0.031610544731186116, 0.02879630367870876, 0.027154876410315, 0.02159101671817172], 'cumulative_variance': [0.15184322143471404, 0.25444280679486864, 0.33163598851... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6][DGlcpNAcb1-4]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-4)][GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)][β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G93356NT | WURCS=2.0/5,11,10/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-4-2-2-2/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h2-i1_h4-j1_h6-k1 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6][DGlcpNAcb1-4]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-4)][GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)][β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G44207QF | WURCS=2.0/4,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-1-3-1-1-1/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h2-i1_h4-j1_h6-k1 | null | null | N-Glycan | {'MAN5-NAG8': {'2': {'phi': -107.67, 'psi': -58.44, 'strain': 1.903, 'linkage': '1-2'}, '3': {'phi': -110.86, 'psi': -67.32, 'strain': 2.236, 'linkage': '1-2'}, '4': {'phi': -86.98, 'psi': -61.95, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -67.11, 'psi': -83.9, 'strain': 0.758, 'linkage': '1-2'}, '6': {'phi': -78.... | {'MAN5-NAG8': {'2': {'phi': -107.67, 'psi': -58.44, 'strain': 1.903, 'linkage': '1-2'}, '3': {'phi': -110.94, 'psi': -67.28, 'strain': 2.236, 'linkage': '1-2'}, '4': {'phi': -87.0, 'psi': -61.92, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -67.13, 'psi': -83.89, 'strain': 0.758, 'linkage': '1-2'}, '6': {'phi': -78.... | {'MAN5-NAG8': {'2': {'phi': -107.67, 'psi': -58.44, 'strain': 1.903, 'linkage': '1-2'}, '3': {'phi': -110.86, 'psi': -67.32, 'strain': 2.236, 'linkage': '1-2'}, '4': {'phi': -86.98, 'psi': -61.95, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -67.11, 'psi': -83.9, 'strain': 0.758, 'linkage': '1-2'}, '6': {'phi': -78.... | null | 11 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G62776EK', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G62776EK', 'url': 'https://glytoucan.org/Structures/Glycans/G62776EK', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G62776EK', 'url': 'https://sandbox.glyomics.org/explore.html?G62776EK', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G62776EK', 'url': 'https://gnome.glyom... | 2,578.33 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'no', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 179 | Saccharide | HexNAc(7)Hex(4) % 2087.77746694 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p)--6a1D-Man,p((--2b1D-GlcNAc,p)--4b1D-GlcNAc,p)--6b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G34029GR', 'relationship': 'ancestor'};{'related_accession': 'G46318LT', 'relationship': 'ancestor'};{'related_accession': 'G34029GR', 'relationship': 'basecomposition'};{'related_accession': 'G46318LT', 'relationship': 'composition'};{'related_accession': 'G44207QF', 'relationship': 'descendant'... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00234/snfg.svg | ./torsion_data/GS00234_torsion_data.txt | {'Cluster 0': {'count': 21682, '3_2_phi_mean': -75.59, '3_2_psi_mean': 5.31, '4_2_phi_mean': -77.48, '4_2_psi_mean': -126.07, '5_4_phi_mean': -79.48, '5_4_psi_mean': -125.14, '6_5_phi_mean': 70.08, '6_5_psi_mean': -60.86, '9_5_phi_mean': -71.06, '9_5_psi_mean': -115.87, '10_5_phi_mean': 76.45, '10_5_psi_mean': 113.46, ... | G97201CX | GS00234 | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-5-2-4-4-4-6/a4-b1_a6-m1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_d4-g1_e4-f1_g4-h1_j3-k1_j6-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dgal-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:a-dman-HEX-1:5,16b:a-dman-HEX-1:5,17b:a-dman-HEX-1:5,18b:a-lgal-HEX-1:5|6:d,LIN,1:1d(... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H](O)[C@H](O[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H]4O)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6... | null | 2,313.84 | {'motif': 'G00028MO', 'motif_label': 'N-Glycan high mannose'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Man(a1-3);Gal(b1-4);Man(a1-6);Fuc(a1-6);GlcNAc(b1-4) | {'GlcNAc': 5, 'Man': 5, 'Gal': 2, 'Fuc': 1} | {'Hex': 7, 'HexNAc': 5, 'dHex': 1} | 41 | 40 | 65 | 13.566054 | {'Cluster 0': 27.1, 'Cluster 1': 26.2, 'Cluster 2': 21.73, 'Cluster 3': 14.47, 'Cluster 4': 10.5} | {'Cluster 0': 23.5901, 'Cluster 1': 17.7457, 'Cluster 2': 10.7289, 'Cluster 3': 10.4315, 'Cluster 4': 4.8183, 'Cluster 5': 4.3971, 'Cluster 6': 3.2009, 'Cluster 7': 3.1934, 'Cluster 8': 2.696, 'Cluster 9': 2.676, 'Cluster 10': 2.0498, 'Cluster 11': 1.8736, 'Cluster 12': 1.6473, 'Cluster 13': 1.4261, 'Cluster 14': 1.424... | {'2': 0.5188116788344533, '3': 0.4666939961346083, '4': 0.46314795251877305, '5': 0.37056234293843315, '6': 0.36599678837302446, '7': 0.25349082624809927, '8': 0.2830952942182816} | {'0': [0, 15, 22, 27], '1': [1, 2, 4, 7, 9, 10, 17, 19, 23, 24], '2': [11, 13], '3': [6, 20], '4': [3, 5, 8, 12, 14, 16, 18, 21, 25, 26]} | {'explained_variance_ratio': [0.1533522734989422, 0.11675744830721903, 0.0609677722160368, 0.05810335215289452, 0.04980182576613925, 0.03461883659165616, 0.030511543161672254, 0.027157019938703612, 0.023142916207965426, 0.0211349977307965], 'cumulative_variance': [0.1533522734989422, 0.2701097218061612, 0.3310774940221... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G09326PI | WURCS=2.0/6,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-5-2-4-4-4-6/a4-b1_a6-m1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_d4-g1_e4-f1_g4-h1_j3-k1_j6-l1 | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G17594CH | WURCS=2.0/5,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-1-4-1-3-3-3-5/a4-b1_a6-m1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_d4-g1_e4-f1_g4-h1_j3-k1_j6-l1 | null | null | Fucosylated N-Glycan;N-Glycan | {'MAN10-NAG13': {'2': {'phi': -89.32, 'psi': -69.24, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -85.57, 'psi': -78.88, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -84.05, 'psi': -78.76, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -71.32, 'psi': -84.64, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -101.... | {'MAN10-NAG13': {'2': {'phi': -89.32, 'psi': -69.24, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -85.58, 'psi': -78.93, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -84.15, 'psi': -78.68, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -71.31, 'psi': -84.62, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -101.... | {'MAN10-NAG13': {'2': {'phi': -89.32, 'psi': -69.24, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -85.57, 'psi': -78.88, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -84.05, 'psi': -78.76, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -71.32, 'psi': -84.64, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -101.... | null | 13 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Bisected'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Hybrid'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G97201CX', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491971581', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491971581', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G97201CX', 'url': 'https://glytoucan.org/Structures/Glycans/G97201CX', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G97201CX', 'url': 'https://sandbox.... | 2,874.46 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 151 | Saccharide | HexNAc(5)Hex(7)dHex(1) % 2313.8351011 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--3a1D-Man,p)--6a1D-Man,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G67496ER', 'relationship': 'ancestor'};{'related_accession': 'G73231OJ', 'relationship': 'ancestor'};{'related_accession': 'G85987RP', 'relationship': 'ancestor'};{'related_accession': 'G97993TU', 'relationship': 'ancestor'};{'related_accession': 'G85987RP', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00235/snfg.svg | ./torsion_data/GS00235_torsion_data.txt | {'Cluster 0': {'count': 21060, '3_2_phi_mean': -78.62, '3_2_psi_mean': -125.56, '4_3_phi_mean': -73.67, '4_3_psi_mean': -122.21, '5_4_phi_mean': 73.28, '5_4_psi_mean': 112.25, '10_4_phi_mean': -55.61, '10_4_psi_mean': -109.88, '11_4_phi_mean': 76.15, '11_4_psi_mean': 105.49, '6_5_phi_mean': -80.94, '6_5_psi_mean': -33.... | G86912UU | GS00235 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/5,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-4-2-5-2-5/a4-b1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_h6-k1_i4-j1_k4-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:b-dgal-HEX-1:5,LIN,1:1d(2+1)2n,2:1... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O[C@@H]4O[C@H](CO)[C... | A3BG3 | 2,208.8 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Gal(b1-4);GlcNAc(b1-4) | {'GlcNAc': 6, 'Gal': 3, 'Man': 3} | {'Hex': 6, 'HexNAc': 6} | 40 | 38 | 61 | 13.208483 | {'Cluster 0': 52.64, 'Cluster 1': 24.27, 'Cluster 2': 10.19, 'Cluster 3': 8.19, 'Cluster 4': 4.7} | {'Cluster 0': 30.7769, 'Cluster 1': 27.0298, 'Cluster 2': 11.6738, 'Cluster 3': 7.4668, 'Cluster 4': 7.0568, 'Cluster 5': 2.6822, 'Cluster 6': 2.5447, 'Cluster 7': 1.9448, 'Cluster 8': 1.4224, 'Cluster 9': 1.3849, 'Cluster 10': 1.1074, 'Cluster 11': 0.8724, 'Cluster 12': 0.7524, 'Cluster 13': 0.6924, 'Cluster 14': 0.61... | {'2': 0.5818026428012836, '3': 0.26188410806189033, '4': 0.304873548680146, '5': 0.2754317076717931, '6': 0.24773669015656033, '7': 0.2474466559648235, '8': 0.247631191293446} | {'0': [6, 8, 10, 12, 18], '1': [5, 15, 19, 23], '2': [0, 9, 20], '3': [2, 4, 13, 14, 17, 21, 22], '4': [1, 3, 7, 11, 16, 24, 25]} | {'explained_variance_ratio': [0.2149839043323358, 0.0636535838201823, 0.05625771254007831, 0.04781564725442215, 0.04178863570952011, 0.0389999918971106, 0.029993742041057796, 0.026779819559725925, 0.02211406041231367, 0.02062115607711981], 'cumulative_variance': [0.2149839043323358, 0.2786374881525181, 0.33489520069259... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G25069TE | WURCS=2.0/5,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-4-2-5-2-5/a4-b1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_h6-k1_i4-j1_k4-l1 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G50078RT | WURCS=2.0/4,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-1-3-1-4-1-4/a4-b1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_h6-k1_i4-j1_k4-l1 | A3BG3 | null | N-Glycan | {'MAN5-NAG8': {'2': {'phi': -93.54, 'psi': -71.07, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -56.85, 'psi': -86.55, 'strain': 1.809, 'linkage': '1-2'}, '4': {'phi': -101.76, 'psi': -71.22, 'strain': 0.927, 'linkage': '1-2'}, '5': {'phi': -59.25, 'psi': -127.29, 'strain': 3.196, 'linkage': '1-2'}, '6': {'phi': -6... | {'MAN5-NAG8': {'2': {'phi': -93.54, 'psi': -71.07, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -56.86, 'psi': -86.5, 'strain': 1.809, 'linkage': '1-2'}, '4': {'phi': -101.7, 'psi': -71.29, 'strain': 0.927, 'linkage': '1-2'}, '5': {'phi': -59.27, 'psi': -127.19, 'strain': 3.196, 'linkage': '1-2'}, '6': {'phi': -68.... | {'MAN5-NAG8': {'2': {'phi': -93.54, 'psi': -71.07, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -56.85, 'psi': -86.55, 'strain': 1.809, 'linkage': '1-2'}, '4': {'phi': -101.76, 'psi': -71.22, 'strain': 0.927, 'linkage': '1-2'}, '5': {'phi': -59.25, 'psi': -127.29, 'strain': 3.196, 'linkage': '1-2'}, '6': {'phi': -6... | null | 12 | {'taxid': 9031, 'name': 'Gallus gallus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G50078RT', 'url': 'https://www.glygen.org/glycan/G50078RT'}], 'common_name': 'Chicken', 'glygen_name': 'Chicken', 'reference_species': 'Gallus gallus [9031]'} | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Bisected'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G86912UU', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491967036', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491967036', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G86912UU', 'url': 'https://glytoucan.org/Structures/Glycans/G86912UU', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G86912UU', 'url': 'https://sandbox.... | 2,741.4 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 164 | Saccharide | HexNAc(6)Hex(6) % 2208.80374133 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G15971GJ', 'relationship': 'ancestor'};{'related_accession': 'G27440SE', 'relationship': 'ancestor'};{'related_accession': 'G49906RN', 'relationship': 'ancestor'};{'related_accession': 'G49906RN', 'relationship': 'basecomposition'};{'related_accession': 'G15971GJ', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00236/snfg.svg | ./torsion_data/GS00236_torsion_data.txt | {'Cluster 0': {'count': 11450, '3_2_phi_mean': -78.48, '3_2_psi_mean': -117.06, '4_3_phi_mean': -75.3, '4_3_psi_mean': -121.87, '5_4_phi_mean': 72.16, '5_4_psi_mean': 145.03, '8_4_phi_mean': -61.03, '8_4_psi_mean': -109.32, '9_4_phi_mean': 78.24, '9_4_psi_mean': 105.16, '6_5_phi_mean': 74.27, '6_5_psi_mean': -8.27, '7_... | G95906RA | GS00236 | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/5,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-5-2-4-4-4/a4-b1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_d4-g1_e4-f1_g4-h1_j3-k1_j6-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dgal-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:a-dman-HEX-1:5,16b:a-dman-HEX-1:5,17b:a-dman-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H](O)[C@H](O[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H]4O)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6... | null | 2,167.78 | {'motif': 'G00028MO', 'motif_label': 'N-Glycan high mannose'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Man(a1-3);Man(a1-6);Gal(b1-4);GlcNAc(b1-4) | {'GlcNAc': 5, 'Man': 5, 'Gal': 2} | {'Hex': 7, 'HexNAc': 5} | 39 | 38 | 61 | 13.537138 | {'Cluster 0': 28.62, 'Cluster 1': 24.73, 'Cluster 2': 23.62, 'Cluster 3': 20.15, 'Cluster 4': 2.88} | {'Cluster 0': 20.7579, 'Cluster 1': 13.6486, 'Cluster 2': 8.0492, 'Cluster 3': 7.7292, 'Cluster 4': 7.1918, 'Cluster 5': 5.7544, 'Cluster 6': 5.5394, 'Cluster 7': 5.037, 'Cluster 8': 4.822, 'Cluster 9': 4.5995, 'Cluster 10': 4.0371, 'Cluster 11': 3.0997, 'Cluster 12': 2.3673, 'Cluster 13': 1.8998, 'Cluster 14': 1.1974,... | {'2': 0.372972035632688, '3': 0.4046147189768948, '4': 0.42823213333258425, '5': 0.3498128042529491, '6': 0.30235454199496575, '7': 0.30022361769254985, '8': 0.2611480263634066} | {'0': [0, 10, 25, 27], '1': [2, 6, 13, 17, 18, 26], '2': [3, 5, 9, 12, 15, 20, 21, 23], '3': [1, 4, 7, 8, 19, 22, 24], '4': [11, 14, 16]} | {'explained_variance_ratio': [0.12293416385575116, 0.10211296640543639, 0.07343647272343692, 0.06897033508464127, 0.04470174498942301, 0.03226114531087599, 0.03134433634831897, 0.02663317363198872, 0.02421685568912368, 0.021328269332384842], 'cumulative_variance': [0.12293416385575116, 0.22504713026118756, 0.2984836029... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G51555HB | WURCS=2.0/5,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-5-2-4-4-4/a4-b1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_d4-g1_e4-f1_g4-h1_j3-k1_j6-l1 | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G54843VG | WURCS=2.0/4,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-1-4-1-3-3-3/a4-b1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_d4-g1_e4-f1_g4-h1_j3-k1_j6-l1 | null | null | N-Glycan | {'MAN9-NAG12': {'2': {'phi': -87.91, 'psi': -72.65, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -88.12, 'psi': -84.08, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -88.15, 'psi': -67.53, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -82.77, 'psi': -82.12, 'strain': 0.373, 'linkage': '1-2'}, '6': {'phi': -75.5... | {'MAN9-NAG12': {'2': {'phi': -87.91, 'psi': -72.65, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -88.1, 'psi': -84.04, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -88.15, 'psi': -67.54, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -82.82, 'psi': -82.13, 'strain': 0.373, 'linkage': '1-2'}, '6': {'phi': -75.56... | {'MAN9-NAG12': {'2': {'phi': -87.91, 'psi': -72.65, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -88.12, 'psi': -84.08, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -88.15, 'psi': -67.53, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -82.77, 'psi': -82.12, 'strain': 0.373, 'linkage': '1-2'}, '6': {'phi': -75.5... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00237/snfg.svg | ./torsion_data/GS00237_torsion_data.txt | {'Cluster 0': {'count': 16911, '3_2_phi_mean': -74.77, '3_2_psi_mean': 116.66, '3_2_phi_std': 14.93, '3_2_psi_std': 17.5}, 'Cluster 1': {'count': 15480, '3_2_phi_mean': -79.38, '3_2_psi_mean': 78.78, '3_2_phi_std': 25.03, '3_2_psi_std': 74.72}, 'Cluster 2': {'count': 10010, '3_2_phi_mean': -75.78, '3_2_psi_mean': 99.97... | G92493ZW | GS00237 | DNeup5Ac[9A]a2-6DGalpb1-4DGlcpNAca1-OH | DNeup5Ac[9A]a2-6DGalpb1-4DGlcpNAc | Neu5Ac9Ac(a2-6)Gal(b1-4)GlcNAc | α-D-Neup5Ac9Ac-(2→6)-β-D-Galp-(1→4)-D-GlcNAc | WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O_9*OCC/3=O]/1-2-3/a4-b1_b6-c2 | null | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)COC(C)=O)O3)[C@H](O)[C@H](O)[C@H]2O)[C@H]1CO | null | 716.25 | null | Neu5Ac9Ac(a2-6) | {'Neu5Ac9Ac': 1, 'Gal': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Ac': 1, 'Ac': 1} | 14 | 12 | 20 | 10.636014 | {'Cluster 0': 28.18, 'Cluster 1': 25.8, 'Cluster 2': 16.68, 'Cluster 3': 16.05, 'Cluster 4': 13.29} | {'Cluster 0': 31.4352, 'Cluster 1': 18.9598, 'Cluster 2': 13.8886, 'Cluster 3': 10.2756, 'Cluster 4': 6.2227, 'Cluster 5': 4.8912, 'Cluster 6': 3.223, 'Cluster 7': 2.4614, 'Cluster 8': 2.1998, 'Cluster 9': 1.5932, 'Cluster 10': 1.5915, 'Cluster 11': 0.9266, 'Cluster 12': 0.7166, 'Cluster 13': 0.5533, 'Cluster 14': 0.54... | {'2': 0.3741518887356057, '3': 0.25561788028227744, '4': 0.25638783650198127, '5': 0.2879937288801591, '6': 0.2566715295781738, '7': 0.22903617700971132, '8': 0.2914645669499014} | {'0': [2, 6], '1': [1, 3, 7, 11, 12, 13, 14], '2': [0, 4, 9], '3': [8, 15], '4': [5, 10]} | {'explained_variance_ratio': [0.176249648214414, 0.09016756730120114, 0.08419114200891047, 0.059546515147338885, 0.057257491231925264, 0.046275652706486536, 0.030511813540879715, 0.028569469276420945, 0.028181578558886384, 0.022525274514272515], 'cumulative_variance': [0.176249648214414, 0.26641721551561515, 0.35060835... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Ac[9A]a2-6DGalpb1-4DGlcpNAca1-OH | Neu5Ac9Ac(a2-6)Gal(b1-4)GlcNAc(a1- | α-D-Neup5Ac9Ac-(2→6)-β-D-Galp-(1→4)-α-D-GlcpNAc-(1→ | G88413ZO | WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O_9*OCC/3=O]/1-2-3/a4-b1_b6-c2 | DNeup5Ac[9A]a2-6DGalpb1-4DGlcpNAcb1-OH | Neu5Ac9Ac(a2-6)Gal(b1-4)GlcNAc(b1- | α-D-Neup5Ac9Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→ | G27818GJ | WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O_9*OCC/3=O]/1-2-3/a4-b1_b6-c2 | null | null | null | {'NDG2-GAL3': {'2': {'phi': -75.4, 'psi': 126.37, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -65.27, 'psi': 123.75, 'strain': 0.031, 'linkage': '1-4'}, '4': {'phi': -82.49, 'psi': 107.86, 'strain': 0.363, 'linkage': '1-4'}, '5': {'phi': -68.64, 'psi': 133.49, 'strain': 0.267, 'linkage': '1-4'}, '6': {'phi': -59.5... | {'NDG2-GAL3': {'2': {'phi': -75.4, 'psi': 126.37, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -65.31, 'psi': 123.8, 'strain': 0.031, 'linkage': '1-4'}, '4': {'phi': -82.52, 'psi': 107.91, 'strain': 0.363, 'linkage': '1-4'}, '5': {'phi': -68.7, 'psi': 133.45, 'strain': 0.267, 'linkage': '1-4'}, '6': {'phi': -59.52,... | {'NDG2-GAL3': {'2': {'phi': -75.4, 'psi': 126.37, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -65.27, 'psi': 123.75, 'strain': 0.031, 'linkage': '1-4'}, '4': {'phi': -82.49, 'psi': 107.86, 'strain': 0.363, 'linkage': '1-4'}, '5': {'phi': -68.64, 'psi': 133.49, 'strain': 0.267, 'linkage': '1-4'}, '6': {'phi': -59.5... | null | 3 | {'taxid': 10116, 'name': 'Rattus norvegicus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G30945GQ', 'url': 'https://www.glygen.org/glycan/G30945GQ'}], 'common_name': 'Rat', 'glygen_name': 'Rat', 'reference_species': 'Rattus norvegicus [10116]'} | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491867773', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491867773', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G92493ZW', 'url': 'https://glytoucan.org/Structures/Glycans/G92493ZW', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G92493ZW', 'url': 'https://gnome.gl... | 884.44 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | null | freeEnd--?D-GlcNAc--4b1D-Gal,p--6a2D-NeuAc,p--9Ac$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G25368XV', 'relationship': 'ancestor'};{'related_accession': 'G64868DU', 'relationship': 'ancestor'};{'related_accession': 'G65021DO', 'relationship': 'ancestor'};{'related_accession': 'G25368XV', 'relationship': 'basecomposition'};{'related_accession': 'G65021DO', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.2.1'} |
./raw_dataGS00238/snfg.svg | ./torsion_data/GS00238_torsion_data.txt | {'Cluster 0': {'count': 13536, '3_2_phi_mean': -73.46, '3_2_psi_mean': 119.25, '3_2_phi_std': 13.58, '3_2_psi_std': 17.0}, 'Cluster 1': {'count': 12985, '3_2_phi_mean': -75.52, '3_2_psi_mean': 121.82, '3_2_phi_std': 14.2, '3_2_psi_std': 16.23}, 'Cluster 2': {'count': 5878, '3_2_phi_mean': -75.52, '3_2_psi_mean': 116.73... | G35061DQ | GS00238 | DNeup5Ac[9A]a2-3DGalpb1-4DGlcpNAca1-OH | DNeup5Ac[9A]a2-3DGalpb1-4DGlcpNAc | Neu5Ac9Ac(a2-3)Gal(b1-4)GlcNAc | α-D-Neup5Ac9Ac-(2→3)-β-D-Galp-(1→4)-D-GlcNAc | WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O_9*OCC/3=O]/1-2-3/a4-b1_b3-c2 | null | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)COC(C)=O)O3)[C@H]2O)[C@H]1CO | null | 716.25 | null | Neu5Ac9Ac(a2-3) | {'Neu5Ac9Ac': 1, 'Gal': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Ac': 1, 'Ac': 1} | 14 | 12 | 20 | 10.351391 | {'Cluster 0': 33.84, 'Cluster 1': 32.46, 'Cluster 2': 14.69, 'Cluster 3': 13.17, 'Cluster 4': 5.84} | {'Cluster 0': 27.5897, 'Cluster 1': 24.7075, 'Cluster 2': 14.9235, 'Cluster 3': 10.139, 'Cluster 4': 8.9066, 'Cluster 5': 3.9521, 'Cluster 6': 3.3122, 'Cluster 7': 2.0898, 'Cluster 8': 0.9974, 'Cluster 9': 0.8524, 'Cluster 10': 0.7099, 'Cluster 11': 0.6974, 'Cluster 12': 0.6774, 'Cluster 13': 0.41, 'Cluster 14': 0.035} | {'2': 0.39278347688931087, '3': 0.35388174918339727, '4': 0.3892812127259961, '5': 0.41943581900837024, '6': 0.3156157949892707, '7': 0.33080749250466945, '8': 0.3211957480357261} | {'0': [6], '1': [5], '2': [1, 3, 4, 8, 9, 11, 13], '3': [2, 12, 14], '4': [0, 7, 10]} | {'explained_variance_ratio': [0.1600954944630366, 0.11753836720955621, 0.09936193560783482, 0.07922556519602882, 0.03957068475249547, 0.033726456686410215, 0.031061934347784616, 0.025663634809366443, 0.022431853966549155, 0.02134811502920463], 'cumulative_variance': [0.1600954944630366, 0.2776338616725928, 0.3769957972... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Ac[9A]a2-3DGalpb1-4DGlcpNAca1-OH | Neu5Ac9Ac(a2-3)Gal(b1-4)GlcNAc(a1- | α-D-Neup5Ac9Ac-(2→3)-β-D-Galp-(1→4)-α-D-GlcpNAc-(1→ | G34318OB | WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O_9*OCC/3=O]/1-2-3/a4-b1_b3-c2 | DNeup5Ac[9A]a2-3DGalpb1-4DGlcpNAcb1-OH | Neu5Ac9Ac(a2-3)Gal(b1-4)GlcNAc(b1- | α-D-Neup5Ac9Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→ | G73077PR | WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O_9*OCC/3=O]/1-2-3/a4-b1_b3-c2 | null | null | null | {'NDG2-GAL3': {'2': {'phi': -74.68, 'psi': 122.36, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -81.27, 'psi': 109.77, 'strain': 0.363, 'linkage': '1-4'}, '4': {'phi': -65.64, 'psi': 131.98, 'strain': 0.267, 'linkage': '1-4'}, '5': {'phi': -171.47, 'psi': 92.88, 'strain': 2.939, 'linkage': '1-4'}, '6': {'phi': -65.... | {'NDG2-GAL3': {'2': {'phi': -74.68, 'psi': 122.36, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -81.21, 'psi': 109.72, 'strain': 0.363, 'linkage': '1-4'}, '4': {'phi': -65.51, 'psi': 131.92, 'strain': 0.267, 'linkage': '1-4'}, '5': {'phi': -171.55, 'psi': 92.85, 'strain': 2.939, 'linkage': '1-4'}, '6': {'phi': -65.... | {'NDG2-GAL3': {'2': {'phi': -74.68, 'psi': 122.36, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -81.27, 'psi': 109.77, 'strain': 0.363, 'linkage': '1-4'}, '4': {'phi': -65.64, 'psi': 131.98, 'strain': 0.267, 'linkage': '1-4'}, '5': {'phi': -171.47, 'psi': 92.88, 'strain': 2.939, 'linkage': '1-4'}, '6': {'phi': -65.... | null | 3 | null | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491944225', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491944225', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G35061DQ', 'url': 'https://glytoucan.org/Structures/Glycans/G35061DQ', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G35061DQ', 'url': 'https://gnome.gl... | 884.44 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | null | freeEnd--?D-GlcNAc--4b1D-Gal,p--3a2D-NeuAc,p--9Ac$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G25368XV', 'relationship': 'ancestor'};{'related_accession': 'G64868DU', 'relationship': 'ancestor'};{'related_accession': 'G65021DO', 'relationship': 'ancestor'};{'related_accession': 'G25368XV', 'relationship': 'basecomposition'};{'related_accession': 'G65021DO', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.2.1'} |
./raw_dataGS00239/snfg.svg | ./torsion_data/GS00239_torsion_data.txt | {'Cluster 0': {'count': 9484, '3_2_phi_mean': -73.6, '3_2_psi_mean': -131.03, '4_3_phi_mean': -76.29, '4_3_psi_mean': -116.09, '5_4_phi_mean': -75.91, '5_4_psi_mean': 130.72, '6_5_phi_mean': -71.5, '6_5_psi_mean': -115.57, '7_6_phi_mean': 67.58, '7_6_psi_mean': 68.57, '8_6_phi_mean': -66.25, '8_6_psi_mean': 142.43, '3_... | G20835CN | GS00239 | DGalpNAca1-3[LFucpa1-2]DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpNAca1-OH | DGalpNAca1-3[LFucpa1-2]DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpNAc | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)GalNAc | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-D-GalNAc | WURCS=2.0/5,7,6/[u2112h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3-2-3-4-5/a3-b1_b4-c1_c3-d1_d4-e1_e2-f1_e3-g1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:b-dgal-HEX-1:5,9b:a-lgal-HEX-1:5|6:d,10b:a-dgal-HEX-1:5,11s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6d(2+1)7n,7:6o(4+1)8d,8:8o(2+1)9d,9:8o(3+1)10d,10:10d(2+1)11n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O[C@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6NC(C)=O)[C@H]5O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H](O)[C@H]4NC(C)=O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO | null | 1,300.49 | {'motif': 'G00036MO', 'motif_label': 'O-Glycan core 3 fuzzy'};{'motif': 'G00058MO', 'motif_label': "I' antigen"};{'motif': 'G00058MO', 'motif_label': 'Type 2 LN2'};{'motif': 'G70519XK', 'motif_label': 'Blood group H (type 2)'};{'motif': 'G74353FF', 'motif_label': 'Blood group A (type 2)'} | GalNAc(a1-3);Fuc(a1-2) | {'GalNAc': 2, 'Gal': 2, 'GlcNAc': 2, 'Fuc': 1} | {'Hex': 2, 'HexNAc': 4, 'dHex': 1} | 22 | 22 | 35 | 11.897634 | {'Cluster 0': 31.61, 'Cluster 1': 28.01, 'Cluster 2': 27.0, 'Cluster 3': 10.05, 'Cluster 4': 3.33} | {'Cluster 0': 31.4602, 'Cluster 1': 20.5579, 'Cluster 2': 9.5924, 'Cluster 3': 8.2225, 'Cluster 4': 7.9125, 'Cluster 5': 5.3328, 'Cluster 6': 4.7662, 'Cluster 7': 4.6429, 'Cluster 8': 2.5064, 'Cluster 9': 1.8332, 'Cluster 10': 1.0966, 'Cluster 11': 0.7766, 'Cluster 12': 0.6299, 'Cluster 13': 0.2833, 'Cluster 14': 0.16,... | {'2': 0.5734048837430782, '3': 0.4438918505878343, '4': 0.32537713397748286, '5': 0.3601772058039975, '6': 0.3247548041831109, '7': 0.27468710894979026, '8': 0.30565789448146374} | {'0': [5, 9], '1': [0, 2, 7, 8, 12, 16, 17, 19], '2': [1, 3, 11, 14, 15], '3': [10], '4': [4, 6, 13, 18]} | {'explained_variance_ratio': [0.2906112604027576, 0.12113158034153669, 0.053616661445552175, 0.04796864032961673, 0.02839941610303488, 0.024464054890332893, 0.023872757748945095, 0.0181845711764842, 0.016724766802765915, 0.016103140833826995], 'cumulative_variance': [0.2906112604027576, 0.4117428407442943, 0.4653595021... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpNAca1-3[LFucpa1-2]DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpNAca1-OH | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)GalNAc(a1- | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-α-D-GalpNAc-(1→ | G49277CJ | WURCS=2.0/4,7,6/[a2112h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-2-3-4-1/a3-b1_b4-c1_c3-d1_d4-e1_e2-f1_e3-g1 | DGalpNAca1-3[LFucpa1-2]DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpNAcb1-OH | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)GalNAc(b1- | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-GalpNAc-(1→ | G36672CQ | WURCS=2.0/5,7,6/[a2112h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3-2-3-4-5/a3-b1_b4-c1_c3-d1_d4-e1_e2-f1_e3-g1 | null | null | O-Glycan | {'GAL6-FUC8': {'2': {'phi': -75.09, 'psi': 143.27, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -68.93, 'psi': 134.06, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -81.33, 'psi': 98.8, 'strain': 1.667, 'linkage': '1-2'}, '5': {'phi': -78.89, 'psi': 149.13, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -76.04... | {'GAL6-FUC8': {'2': {'phi': -75.09, 'psi': 143.27, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -68.9, 'psi': 133.98, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -81.34, 'psi': 98.85, 'strain': 1.667, 'linkage': '1-2'}, '5': {'phi': -78.91, 'psi': 149.12, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -76.02... | {'GAL6-FUC8': {'2': {'phi': -75.09, 'psi': 143.27, 'strain': 0.496, 'linkage': '1-2'}, '3': {'phi': -68.93, 'psi': 134.06, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -81.33, 'psi': 98.8, 'strain': 1.667, 'linkage': '1-2'}, '5': {'phi': -78.89, 'psi': 149.13, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -76.04... | null | 7 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G49277CJ', 'url': 'https://www.glygen.org/glycan/G49277CJ'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 3'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G20835CN', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491937917', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491937917', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G20835CN', 'url': 'https://glytoucan.org/Structures/Glycans/G20835CN', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G20835CN', 'url': 'https://sandbox.... | 1,608.84 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 281 | Saccharide | HexNAc(4)Hex(2)dHex(1) % 1300.49161099 | freeEnd--?D-GalNAc--3b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcNAc,p--4b1D-Gal,p(--2a1L-Fuc,p)--3a1D-GalNAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000036', 'name': 'Blood... | {'related_accession': 'G32077KC', 'relationship': 'ancestor'};{'related_accession': 'G40547YM', 'relationship': 'ancestor'};{'related_accession': 'G60060GI', 'relationship': 'ancestor'};{'related_accession': 'G98888DJ', 'relationship': 'ancestor'};{'related_accession': 'G60060GI', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00240/snfg.svg | ./torsion_data/GS00240_torsion_data.txt | {'Cluster 0': {'count': 11330, '3_2_phi_mean': -78.97, '3_2_psi_mean': -130.03, '4_3_phi_mean': -76.6, '4_3_psi_mean': -123.19, '5_4_phi_mean': 73.24, '5_4_psi_mean': -48.1, '10_4_phi_mean': 72.24, '10_4_psi_mean': 119.1, '6_5_phi_mean': -43.32, '6_5_psi_mean': -3.91, '8_5_phi_mean': -82.11, '8_5_psi_mean': -87.33, '7_... | G40065EM | GS00240 | DGalpNAcb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpNAcb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | GalNAc(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-GalpNAc-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3-4-2-5-2-6-4-2-6-2-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i6-l1_j4-k1_l4-m1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10s:n-acetyl,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:a-dman-HEX-1:5,15b:b-dglc-HEX-1:5,16s:n-acetyl,17b:b-dgal-HEX-1:5,18b:b-dglc-HEX-1:5,19s:n-acetyl,20b:b-... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | null | 2,411.88 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G31736BK', 'motif_label': 'LDN'};{'motif': 'G31736BK', 'motif_label': 'LacdiNAc'} | Gal(b1-4);GalNAc(b1-4) | {'GlcNAc': 6, 'Gal': 3, 'Man': 3, 'GalNAc': 1} | {'Hex': 6, 'HexNAc': 7} | 44 | 41 | 66 | 13.626124 | {'Cluster 0': 28.32, 'Cluster 1': 22.53, 'Cluster 2': 21.28, 'Cluster 3': 17.59, 'Cluster 4': 10.27} | {'Cluster 0': 18.8106, 'Cluster 1': 14.7185, 'Cluster 2': 7.3243, 'Cluster 3': 7.3218, 'Cluster 4': 6.8243, 'Cluster 5': 5.6869, 'Cluster 6': 4.4521, 'Cluster 7': 4.2146, 'Cluster 8': 4.1446, 'Cluster 9': 3.8371, 'Cluster 10': 3.6871, 'Cluster 11': 3.3372, 'Cluster 12': 3.0922, 'Cluster 13': 2.9072, 'Cluster 14': 2.062... | {'2': 0.38064995291995785, '3': 0.36445065529950577, '4': 0.42185394320615366, '5': 0.4045778195435985, '6': 0.34079985983591543, '7': 0.3065631486982481, '8': 0.3145445540082355} | {'0': [0, 15, 23], '1': [3, 5, 20], '2': [2, 4, 6, 9, 10, 11, 12, 14, 16, 18, 25, 26, 27, 28], '3': [8, 17, 19], '4': [1, 7, 13, 21, 22, 24]} | {'explained_variance_ratio': [0.20626609977145446, 0.12082511316230916, 0.06012494025895948, 0.050684760005555364, 0.04809512997537717, 0.03803158870905566, 0.03052406639666069, 0.02467318006151744, 0.023812077382149664, 0.016991909813656034], 'cumulative_variance': [0.20626609977145446, 0.32709121293376364, 0.38721615... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpNAcb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | GalNAc(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-GalpNAc-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G38141KL | WURCS=2.0/6,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3-4-2-5-2-6-4-2-6-2-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i6-l1_j4-k1_l4-m1 | DGalpNAcb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | GalNAc(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-GalpNAc-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G28298VW | WURCS=2.0/5,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-1-2-3-1-4-1-5-3-1-5-1-5/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i6-l1_j4-k1_l4-m1 | null | null | N-Glycan | {'MAN5-NAG8': {'2': {'phi': -98.37, 'psi': -85.5, 'strain': 0.71, 'linkage': '1-2'}, '3': {'phi': -71.66, 'psi': -82.61, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -85.34, 'psi': -85.55, 'strain': 0.373, 'linkage': '1-2'}, '5': {'phi': -74.61, 'psi': -59.04, 'strain': 1.265, 'linkage': '1-2'}, '6': {'phi': -65.15... | {'MAN5-NAG8': {'2': {'phi': -98.37, 'psi': -85.5, 'strain': 0.71, 'linkage': '1-2'}, '3': {'phi': -71.66, 'psi': -82.62, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -85.36, 'psi': -85.56, 'strain': 0.373, 'linkage': '1-2'}, '5': {'phi': -74.59, 'psi': -59.03, 'strain': 1.265, 'linkage': '1-2'}, '6': {'phi': -65.14... | {'MAN5-NAG8': {'2': {'phi': -98.37, 'psi': -85.5, 'strain': 0.71, 'linkage': '1-2'}, '3': {'phi': -71.66, 'psi': -82.61, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -85.34, 'psi': -85.55, 'strain': 0.373, 'linkage': '1-2'}, '5': {'phi': -74.61, 'psi': -59.04, 'strain': 1.265, 'linkage': '1-2'}, '6': {'phi': -65.15... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G40065EM'}]} | 13 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G40065EM', 'url': 'https://glycosmos.org/glycans/show/G40065EM'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G40065EM', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491851019', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491851019', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1808', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '28360', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+28360', 'database': 'Ca... | 2,986.52 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 151 | Saccharide | HexNAc(7)Hex(6) % 2411.88311393 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p--4b1D-GalNAc,p)--4b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000016', 'name': 'LacdiNAc', 'synonym': 'LDN', 'keywords': "LacdiNAc; N,N'-diacetyllactosediamine"} | {'related_accession': 'G39818ST', 'relationship': 'ancestor'};{'related_accession': 'G43734MM', 'relationship': 'ancestor'};{'related_accession': 'G67221ZT', 'relationship': 'ancestor'};{'related_accession': 'G43734MM', 'relationship': 'basecomposition'};{'related_accession': 'G67221ZT', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00241/snfg.svg | ./torsion_data/GS00241_torsion_data.txt | {'Cluster 0': {'count': 8876, '3_2_phi_mean': -73.61, '3_2_psi_mean': -99.93, '4_3_phi_mean': -73.44, '4_3_psi_mean': 100.56, '5_4_phi_mean': -79.51, '5_4_psi_mean': 85.62, '6_5_phi_mean': -73.56, '6_5_psi_mean': -124.39, '7_6_phi_mean': -79.82, '7_6_psi_mean': 98.13, '8_7_phi_mean': -74.05, '8_7_psi_mean': -124.68, '1... | G16721UT | GS00241 | DGlcpAb1-3DGalpNAcb1-4DGlcpA[2S]b1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpb1-OH | DGlcpAb1-3DGalpNAcb1-4DGlcpA[2S]b1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylp | GlcA(b1-3)GalNAc(b1-4)GlcA2S(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc(b1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl | β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA2S-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-D-Xyl | WURCS=2.0/6,10,9/[u212h][a2112h-1b_1-5][a2122A-1b_1-5][a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O_4*OSO/3=O/3=O][a2122A-1b_1-5_2*OSO/3=O/3=O]/1-2-2-3-4-3-5-6-4-3/a4-b1_b3-c1_c3-d1_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1 | RES,1b:x-dxyl-PEN-1:5,2b:b-dgal-HEX-1:5,3b:b-dgal-HEX-1:5,4b:b-dglc-HEX-1:5|-1:a,5b:b-dgal-HEX-1:5,6s:n-acetyl,7b:b-dglc-HEX-1:5|-1:a,8b:b-dgal-HEX-1:5,9b:b-dglc-HEX-1:5,10s:sulfate,11b:b-dgal-HEX-1:5,12s:n-acetyl,13b:b-dglc-HEX-1:5|-1:a,14s:sulfate,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3o(3+1)4d,4:4o(4+1)5d,5:5d(2+1)6n,6:5o(3... | O1C[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](C(=O)O)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O[C@@H]6O[C@H](C(=O)O)[C@@H](O[C@@H]7O[C@H](CO)[C@H](OS(=O)(=O)O)[C@H](O[C@@H]8O[C@H](C(=O)O)[C@@H](O[C@@H]9O[C@H](CO)[C@H](O)[C@H](O[C@@H]%10O[C@H](C(=O)O)[C@@H](O)[C@H](O)[C@H]%10O)[C... | null | 1,947.44 | null | GlcA(b1-3) | {'GlcA': 3, 'GalNAc': 2, 'Gal': 2, 'GlcA2S': 1, 'GalNAc4S': 1, 'Xyl': 1} | {'Hex': 2, 'HexA': 4, 'HexNAc': 3, 'Pen': 1, 'S': 2} | 1 | 5 | 6 | 14.024734 | {'Cluster 0': 29.58, 'Cluster 1': 29.17, 'Cluster 2': 16.17, 'Cluster 3': 14.64, 'Cluster 4': 10.43} | {'Cluster 0': 36.2197, 'Cluster 1': 13.7953, 'Cluster 2': 10.1457, 'Cluster 3': 7.6726, 'Cluster 4': 6.2727, 'Cluster 5': 6.1494, 'Cluster 6': 3.313, 'Cluster 7': 2.4731, 'Cluster 8': 2.4298, 'Cluster 9': 2.4031, 'Cluster 10': 2.2798, 'Cluster 11': 1.8998, 'Cluster 12': 1.1399, 'Cluster 13': 1.0499, 'Cluster 14': 0.723... | {'2': 0.3544159470774455, '3': 0.30196380997788874, '4': 0.2237777777887874, '5': 0.23570837056364238, '6': 0.2693341039147095, '7': 0.2536358739698819, '8': 0.25492982577051837} | {'0': [4], '1': [1, 3, 6, 8, 9, 10, 17, 19, 20, 24, 28, 29], '2': [18, 23], '3': [14, 30], '4': [0, 2, 5, 7, 11, 12, 13, 15, 16, 21, 22, 25, 26, 27]} | {'explained_variance_ratio': [0.21044880758025944, 0.09748381654907977, 0.05821945572877569, 0.0565035653879203, 0.04238589465670118, 0.03388051992491595, 0.030784529541865238, 0.02746044036911313, 0.021043370371666894, 0.01709021715139207], 'cumulative_variance': [0.21044880758025944, 0.3079326241293392, 0.36615207985... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGlcpAb1-3DGalpNAcb1-4DGlcpA[2S]b1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpa1-OH | GlcA(b1-3)GalNAc(b1-4)GlcA2S(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc(b1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl(a1- | β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA2S-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-α-D-Xylp-(1→ | null | WURCS=2.0/6,10,9/[a212h-1a_1-5][a2112h-1b_1-5][a2122A-1b_1-5][a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O_4*OSO/3=O/3=O][a2122A-1b_1-5_2*OSO/3=O/3=O]/1-2-2-3-4-3-5-6-4-3/a4-b1_b3-c1_c3-d1_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1 | DGlcpAb1-3DGalpNAcb1-4DGlcpA[2S]b1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAcb1-4DGlcpAb1-3DGalpb1-3DGalpb1-4DXylpb1-OH | GlcA(b1-3)GalNAc(b1-4)GlcA2S(b1-3)GalNAc4S(b1-4)GlcA(b1-3)GalNAc(b1-4)GlcA(b1-3)Gal(b1-3)Gal(b1-4)Xyl(b1- | β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA2S-(1→3)-β-D-GalpNAc4S-(1→4)-β-D-GlcpA-(1→3)-β-D-GalpNAc-(1→4)-β-D-GlcpA-(1→3)-β-D-Galp-(1→3)-β-D-Galp-(1→4)-β-D-Xylp-(1→ | null | WURCS=2.0/6,10,9/[a212h-1b_1-5][a2112h-1b_1-5][a2122A-1b_1-5][a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O_4*OSO/3=O/3=O][a2122A-1b_1-5_2*OSO/3=O/3=O]/1-2-2-3-4-3-5-6-4-3/a4-b1_b3-c1_c3-d1_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1 | null | null | GAG | {'GAL3-GAL4': {'2': {'phi': -60.86, 'psi': -137.22, 'strain': 0.758, 'linkage': '1-3'}, '3': {'phi': -56.14, 'psi': -139.2, 'strain': 1.634, 'linkage': '1-3'}, '4': {'phi': -69.1, 'psi': -97.39, 'strain': 0.094, 'linkage': '1-3'}, '5': {'phi': -60.96, 'psi': -146.57, 'strain': 0.928, 'linkage': '1-3'}, '6': {'phi': -73... | {} | {} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00242/snfg.svg | ./torsion_data/GS00242_torsion_data.txt | {'Cluster 0': {'count': 10802, '3_2_phi_mean': -78.2, '3_2_psi_mean': -123.79, '4_3_phi_mean': -74.64, '4_3_psi_mean': -112.79, '5_4_phi_mean': 72.17, '5_4_psi_mean': 142.92, '8_4_phi_mean': -61.1, '8_4_psi_mean': -109.08, '9_4_phi_mean': 78.19, '9_4_psi_mean': 105.26, '6_5_phi_mean': 74.96, '6_5_psi_mean': -11.0, '7_5... | G88963CA | GS00242 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/5,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-2-4-4-4/a4-b1_b4-c1_c3-d1_c4-h1_c6-i1_d2-e1_d4-g1_e4-f1_i3-j1_i6-k1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:a-dman-HEX-1:5,15b:a-dman-HEX-1:5,16b:a-dman-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H](O)[C@H](O[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H]4O)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](... | null | 2,005.72 | {'motif': 'G00028MO', 'motif_label': 'N-Glycan high mannose'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Man(a1-3);Man(a1-6);Gal(b1-4);GlcNAc(b1-4) | {'GlcNAc': 5, 'Man': 5, 'Gal': 1} | {'Hex': 6, 'HexNAc': 5} | 36 | 35 | 56 | 13.310116 | {'Cluster 0': 27.0, 'Cluster 1': 25.72, 'Cluster 2': 25.63, 'Cluster 3': 14.72, 'Cluster 4': 6.92} | {'Cluster 0': 13.6486, 'Cluster 1': 10.0215, 'Cluster 2': 9.749, 'Cluster 3': 9.4416, 'Cluster 4': 8.7716, 'Cluster 5': 8.3567, 'Cluster 6': 6.4569, 'Cluster 7': 5.4945, 'Cluster 8': 4.5345, 'Cluster 9': 4.3671, 'Cluster 10': 3.7471, 'Cluster 11': 2.6822, 'Cluster 12': 2.4198, 'Cluster 13': 2.2123, 'Cluster 14': 1.4924... | {'2': 0.3063344902711045, '3': 0.38807935777562896, '4': 0.4187275092913395, '5': 0.38921178580803534, '6': 0.36209978250978014, '7': 0.3040005975339942, '8': 0.32499879771415663} | {'0': [0, 13, 17, 19], '1': [4, 6, 8, 10, 11, 18, 22], '2': [1, 5, 15, 16], '3': [2, 3, 7, 12, 21, 23, 26], '4': [9, 14, 20, 24, 25]} | {'explained_variance_ratio': [0.12407834253739286, 0.10134592848956696, 0.07907446480034072, 0.0648466728766656, 0.05885936767983077, 0.03819893658822917, 0.03239689199027626, 0.028697571724557416, 0.023637085534091235, 0.019647418282240977], 'cumulative_variance': [0.12407834253739286, 0.22542427102695983, 0.304498735... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G17882EL | WURCS=2.0/5,11,10/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-2-4-4-4/a4-b1_b4-c1_c3-d1_c4-h1_c6-i1_d2-e1_d4-g1_e4-f1_i3-j1_i6-k1 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G26274XD | WURCS=2.0/4,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-1-1-3-3-3/a4-b1_b4-c1_c3-d1_c4-h1_c6-i1_d2-e1_d4-g1_e4-f1_i3-j1_i6-k1 | null | null | N-Glycan | {'MAN9-NAG11': {'2': {'phi': -90.69, 'psi': -70.74, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -90.26, 'psi': -75.86, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -82.61, 'psi': -80.32, 'strain': 0.373, 'linkage': '1-2'}, '5': {'phi': -85.97, 'psi': -81.95, 'strain': 0.373, 'linkage': '1-2'}, '6': {'phi': -78... | {'MAN9-NAG11': {'2': {'phi': -90.69, 'psi': -70.74, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -90.32, 'psi': -75.85, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -82.62, 'psi': -80.32, 'strain': 0.373, 'linkage': '1-2'}, '5': {'phi': -85.98, 'psi': -81.95, 'strain': 0.373, 'linkage': '1-2'}, '6': {'phi': -78... | {'MAN9-NAG11': {'2': {'phi': -90.69, 'psi': -70.74, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -90.26, 'psi': -75.86, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -82.61, 'psi': -80.32, 'strain': 0.373, 'linkage': '1-2'}, '5': {'phi': -85.97, 'psi': -81.95, 'strain': 0.373, 'linkage': '1-2'}, '6': {'phi': -78... | null | 11 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Bisected'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Hybrid'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G88963CA', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491967932', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491967932', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G88963CA', 'url': 'https://glytoucan.org/Structures/Glycans/G88963CA', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G88963CA', 'url': 'https://sandbox.... | 2,496.27 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 179 | Saccharide | HexNAc(5)Hex(6) % 2005.72436872 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--3a1D-Man,p)--6a1D-Man,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G01291QB', 'relationship': 'ancestor'};{'related_accession': 'G53664NP', 'relationship': 'ancestor'};{'related_accession': 'G60033FS', 'relationship': 'ancestor'};{'related_accession': 'G60033FS', 'relationship': 'basecomposition'};{'related_accession': 'G01291QB', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00243/snfg.svg | ./torsion_data/GS00243_torsion_data.txt | {'Cluster 0': {'count': 22102, '3_2_phi_mean': -77.74, '3_2_psi_mean': 33.52, '4_2_phi_mean': -77.09, '4_2_psi_mean': -125.85, '5_4_phi_mean': -74.57, '5_4_psi_mean': -123.16, '6_5_phi_mean': 77.06, '6_5_psi_mean': 126.7, '9_5_phi_mean': -61.26, '9_5_psi_mean': -109.35, '10_5_phi_mean': 77.48, '10_5_psi_mean': 104.58, ... | G98220BB | GS00243 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-2-4-4-4-6/a4-b1_a6-l1_b4-c1_c3-d1_c4-h1_c6-i1_d2-e1_d4-g1_e4-f1_i3-j1_i6-k1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:a-dman-HEX-1:5,15b:a-dman-HEX-1:5,16b:a-dman-HEX-1:5,17b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d,... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H](O)[C@H](O[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H]4O)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](... | null | 2,151.78 | {'motif': 'G00028MO', 'motif_label': 'N-Glycan high mannose'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Man(a1-3);Gal(b1-4);Man(a1-6);Fuc(a1-6);GlcNAc(b1-4) | {'GlcNAc': 5, 'Man': 5, 'Gal': 1, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 5, 'dHex': 1} | 38 | 37 | 60 | 13.509591 | {'Cluster 0': 27.62, 'Cluster 1': 22.77, 'Cluster 2': 21.99, 'Cluster 3': 17.98, 'Cluster 4': 9.63} | {'Cluster 0': 25.5812, 'Cluster 1': 13.8861, 'Cluster 2': 11.2014, 'Cluster 3': 8.0004, 'Cluster 4': 6.4744, 'Cluster 5': 4.657, 'Cluster 6': 3.6259, 'Cluster 7': 2.8935, 'Cluster 8': 2.8785, 'Cluster 9': 2.7235, 'Cluster 10': 2.501, 'Cluster 11': 2.4473, 'Cluster 12': 2.0235, 'Cluster 13': 1.7823, 'Cluster 14': 1.3549... | {'2': 0.43605303346826874, '3': 0.4268004350442185, '4': 0.41628315989512027, '5': 0.35570871845767005, '6': 0.3230183359189059, '7': 0.3098419091874908, '8': 0.3163367452522304} | {'0': [1, 2, 4, 10, 14, 19, 20, 22, 26], '1': [3, 6, 9, 12, 16], '2': [7, 13, 17, 21, 24], '3': [5, 8, 11, 18, 23, 25], '4': [0, 15, 27]} | {'explained_variance_ratio': [0.12446853747938329, 0.10988314694307422, 0.07367326643486946, 0.061381279088482746, 0.051902844252391445, 0.0357937971347153, 0.03373258254839872, 0.02863778860002586, 0.02643637193005275, 0.02061946537224497], 'cumulative_variance': [0.12446853747938329, 0.23435168442245752, 0.3080249508... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G89652RV | WURCS=2.0/6,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-2-4-4-4-6/a4-b1_a6-l1_b4-c1_c3-d1_c4-h1_c6-i1_d2-e1_d4-g1_e4-f1_i3-j1_i6-k1 | DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G26255AN | WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-1-1-3-3-3-5/a4-b1_a6-l1_b4-c1_c3-d1_c4-h1_c6-i1_d2-e1_d4-g1_e4-f1_i3-j1_i6-k1 | null | null | Fucosylated N-Glycan;N-Glycan | {'MAN10-NAG12': {'2': {'phi': -96.53, 'psi': -72.84, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -88.35, 'psi': -82.98, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -90.51, 'psi': -62.04, 'strain': 0.567, 'linkage': '1-2'}, '5': {'phi': -90.19, 'psi': -67.61, 'strain': 0.567, 'linkage': '1-2'}, '6': {'phi': -8... | {'MAN10-NAG12': {'2': {'phi': -96.53, 'psi': -72.84, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -88.39, 'psi': -82.93, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -90.49, 'psi': -62.06, 'strain': 0.567, 'linkage': '1-2'}, '5': {'phi': -90.17, 'psi': -67.61, 'strain': 0.567, 'linkage': '1-2'}, '6': {'phi': -8... | {'MAN10-NAG12': {'2': {'phi': -96.53, 'psi': -72.84, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -88.35, 'psi': -82.98, 'strain': 0.373, 'linkage': '1-2'}, '4': {'phi': -90.51, 'psi': -62.04, 'strain': 0.567, 'linkage': '1-2'}, '5': {'phi': -90.19, 'psi': -67.61, 'strain': 0.567, 'linkage': '1-2'}, '6': {'phi': -8... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00244/snfg.svg | ./torsion_data/GS00244_torsion_data.txt | {'Cluster 0': {'count': 32932, '3_2_phi_mean': -78.82, '3_2_psi_mean': 75.37, '4_2_phi_mean': -77.89, '4_2_psi_mean': -126.88, '5_4_phi_mean': -76.73, '5_4_psi_mean': -122.87, '6_5_phi_mean': 79.43, '6_5_psi_mean': 89.27, '10_5_phi_mean': -63.49, '10_5_psi_mean': -108.61, '11_5_phi_mean': 77.36, '11_5_psi_mean': 105.65... | G38883QO | GS00244 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-4-2-5-2-6/a4-b1_a6-l1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_h6-k1_i4-j1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H](O[C@H... | F2A3G2B | 2,192.81 | null | Fuc(a1-6);Gal(b1-4);GlcNAc(b1-6);GlcNAc(b1-4) | {'GlcNAc': 6, 'Man': 3, 'Gal': 2, 'Fuc': 1} | {'Hex': 5, 'HexNAc': 6, 'dHex': 1} | 1 | 5 | 6 | 13.395441 | {'Cluster 0': 41.16, 'Cluster 1': 36.93, 'Cluster 2': 9.14, 'Cluster 3': 8.75, 'Cluster 4': 4.02} | {'Cluster 0': 29.637, 'Cluster 1': 21.2054, 'Cluster 2': 6.6431, 'Cluster 3': 5.9144, 'Cluster 4': 5.2832, 'Cluster 5': 5.2582, 'Cluster 6': 4.9395, 'Cluster 7': 4.3808, 'Cluster 8': 3.3822, 'Cluster 9': 3.0872, 'Cluster 10': 1.7798, 'Cluster 11': 1.5161, 'Cluster 12': 1.2886, 'Cluster 13': 1.2211, 'Cluster 14': 1.0224... | {'2': 0.4919616057122167, '3': 0.5520665293764873, '4': 0.49853338241042994, '5': 0.4322721789375195, '6': 0.37004411336105725, '7': 0.3355193877576196, '8': 0.31834455041622994} | {'0': [2, 5, 10, 12, 21, 24], '1': [3, 9, 16, 20], '2': [6, 13, 14, 22, 25, 26], '3': [1, 4, 8, 11, 17], '4': [0, 7, 15, 18, 19, 23]} | {'explained_variance_ratio': [0.19529701162432317, 0.10214900299744238, 0.056261506597138806, 0.04865523049211191, 0.041959657754102604, 0.0329490076719246, 0.02948038734945585, 0.025425734703241155, 0.0218200167268029, 0.019872894097529094], 'cumulative_variance': [0.19529701162432317, 0.29744601462176556, 0.353707521... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G73946CG | WURCS=2.0/6,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-4-2-5-2-6/a4-b1_a6-l1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_h6-k1_i4-j1 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G15103WJ | WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-1-3-1-4-1-5/a4-b1_a6-l1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_h6-k1_i4-j1 | F2A3G2B | null | Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG8': {'2': {'phi': -89.82, 'psi': -74.35, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -105.06, 'psi': -62.51, 'strain': 1.173, 'linkage': '1-2'}, '4': {'phi': -96.44, 'psi': -84.34, 'strain': 0.71, 'linkage': '1-2'}, '5': {'phi': -70.56, 'psi': -84.12, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -61.0... | {'MAN6-NAG8': {'2': {'phi': -89.82, 'psi': -74.35, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -105.05, 'psi': -62.54, 'strain': 1.173, 'linkage': '1-2'}, '4': {'phi': -96.43, 'psi': -84.38, 'strain': 0.71, 'linkage': '1-2'}, '5': {'phi': -70.61, 'psi': -84.06, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -61.0... | {'MAN6-NAG8': {'2': {'phi': -89.82, 'psi': -74.35, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -105.06, 'psi': -62.51, 'strain': 1.173, 'linkage': '1-2'}, '4': {'phi': -96.44, 'psi': -84.34, 'strain': 0.71, 'linkage': '1-2'}, '5': {'phi': -70.56, 'psi': -84.12, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -61.0... | null | 12 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Bisected'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G38883QO', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': 'G38883QO', 'url': 'https://glytoucan.org/Structures/Glycans/G38883QO', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G38883QO', 'url': 'https://sandbox.glyomics.org/explore.html?G38883QO', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G38883QO', 'url': 'https://gnome.glyom... | 2,711.39 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 164 | Saccharide | HexNAc(6)Hex(5)dHex(1) % 2192.8088267 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G27915IV', 'relationship': 'ancestor'};{'related_accession': 'G69364JQ', 'relationship': 'ancestor'};{'related_accession': 'G70102PJ', 'relationship': 'ancestor'};{'related_accession': 'G95640AM', 'relationship': 'ancestor'};{'related_accession': 'G69364JQ', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00245/snfg.svg | ./torsion_data/GS00245_torsion_data.txt | {'Cluster 0': {'count': 9750, '3_2_phi_mean': -73.23, '3_2_psi_mean': 123.76, '4_3_phi_mean': -88.01, '4_3_psi_mean': -88.49, '10_3_phi_mean': -79.72, '10_3_psi_mean': 105.59, '5_4_phi_mean': -67.84, '5_4_psi_mean': -109.16, '9_4_phi_mean': -69.2, '9_4_psi_mean': 141.14, '6_5_phi_mean': -79.31, '6_5_psi_mean': 104.51, ... | G02080UT | GS00245 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcp | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Gal(b1-3)GlcNAc(b1-3)]Gal(b1-4)Glc | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,10,9/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-3-4-2-3-2-4/a4-b1_b3-c1_b6-e1_c3-d1_e3-f1_e4-g1_g3-h1_h3-i1_i2-j1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:a-lgal-HEX-1:5|6:d,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dgal-HEX-1:5,13b:a-lgal-HEX-1:5|6:d,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:2o(6+1)6d,6:6d(2+1)7n,7:6o(3+1)8d,... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O[C@@H]7O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]7O)[C@H]5NC(C)=O)[C@H]4O)[C@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H]3NC(C)=O)[C@H](O)[C@H]... | null | 1,729.63 | {'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00294TN', 'motif_label': 'Blood group H (type 1)'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Gal(b1-3);Fuc(a1-2) | {'Gal': 4, 'GlcNAc': 3, 'Fuc': 2, 'Glc': 1} | {'Hex': 5, 'HexNAc': 3, 'dHex': 2} | 29 | 30 | 49 | 12.870536 | {'Cluster 0': 32.5, 'Cluster 1': 31.19, 'Cluster 2': 18.5, 'Cluster 3': 11.47, 'Cluster 4': 6.35} | {'Cluster 0': 32.4734, 'Cluster 1': 27.6239, 'Cluster 2': 8.4392, 'Cluster 3': 4.5362, 'Cluster 4': 4.0529, 'Cluster 5': 3.483, 'Cluster 6': 2.6097, 'Cluster 7': 2.5897, 'Cluster 8': 2.5664, 'Cluster 9': 2.4764, 'Cluster 10': 1.9665, 'Cluster 11': 1.5398, 'Cluster 12': 1.2065, 'Cluster 13': 0.9566, 'Cluster 14': 0.7599... | {'2': 0.4282086251594124, '3': 0.4448332526003547, '4': 0.31780845481638664, '5': 0.3528480450495621, '6': 0.37095191152524754, '7': 0.2915637719034823, '8': 0.27800578550283556} | {'0': [13, 18], '1': [6, 21, 22], '2': [0, 8, 14, 15, 23], '3': [2, 3, 5, 10, 11, 16, 24], '4': [1, 4, 7, 9, 12, 17, 19, 20]} | {'explained_variance_ratio': [0.21769884674114362, 0.12111545438481267, 0.07542467025372782, 0.05894909845710937, 0.038923801555101716, 0.034266709797246275, 0.026956366942794092, 0.023538756351448496, 0.01851031590304185, 0.01543814562946555], 'cumulative_variance': [0.21769884674114362, 0.3388143011259563, 0.41423897... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Gal(b1-3)GlcNAc(b1-3)]Gal(b1-4)Glc(a1- | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G48273MK | WURCS=2.0/4,10,9/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-3-4-2-3-2-4/a4-b1_b3-c1_b6-e1_c3-d1_e3-f1_e4-g1_g3-h1_h3-i1_i2-j1 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DGalpb1-3DGlcpNAcb1-3]DGalpb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-6)[Gal(b1-3)GlcNAc(b1-3)]Gal(b1-4)Glc(b1- | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G75567HL | WURCS=2.0/4,10,9/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-3-4-2-3-2-4/a4-b1_b3-c1_b6-e1_c3-d1_e3-f1_e4-g1_g3-h1_h3-i1_i2-j1 | null | null | null | {'GAL7-FUC8': {'2': {'phi': -76.43, 'psi': 131.47, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -77.57, 'psi': 133.78, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -67.42, 'psi': 145.86, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -76.08, 'psi': 137.93, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -69.... | {'GAL7-FUC8': {'2': {'phi': -76.43, 'psi': 131.47, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -77.59, 'psi': 133.79, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -67.46, 'psi': 145.87, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -76.13, 'psi': 137.95, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -69.... | {'GAL7-FUC8': {'2': {'phi': -76.43, 'psi': 131.47, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -77.57, 'psi': 133.78, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -67.42, 'psi': 145.86, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -76.08, 'psi': 137.93, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -69.... | null | 10 | null | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G02080UT', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G02080... | {'id': '491929542', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491929542', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G02080UT', 'url': 'https://glytoucan.org/Structures/Glycans/G02080UT', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G02080UT', 'url': 'https://sandbox.... | 2,150.1 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 196 | Saccharide | HexNAc(3)Hex(5)dHex(2) % 1729.62861776 | freeEnd--?D-Glc--4b1D-Gal,p(--3b1D-GlcNAc,p--3b1D-Gal,p)--6b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3b1D-GlcNAc,p--3b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Le... | {'related_accession': 'G26591JV', 'relationship': 'ancestor'};{'related_accession': 'G27622TD', 'relationship': 'ancestor'};{'related_accession': 'G29299MO', 'relationship': 'ancestor'};{'related_accession': 'G79578VV', 'relationship': 'ancestor'};{'related_accession': 'G88823RD', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00247/snfg.svg | ./torsion_data/GS00247_torsion_data.txt | {'Cluster 0': {'count': 12736, '3_2_phi_mean': 73.2, '3_2_psi_mean': 90.05, '4_3_phi_mean': -65.25, '4_3_psi_mean': -119.56, '5_4_phi_mean': 58.91, '5_4_psi_mean': 63.84, '6_4_phi_mean': -67.85, '6_4_psi_mean': 138.38, '3_2_phi_std': 12.15, '3_2_psi_std': 35.58, '4_3_phi_std': 7.25, '4_3_psi_std': 14.55, '5_4_phi_std':... | G19461JL | GS00247 | LFucpa1-2[DGalpa1-3]DGalpb1-3DGalpNAca1-3DGalpb1-OH | LFucpa1-2[DGalpa1-3]DGalpb1-3DGalpNAca1-3DGalp | Fuc(a1-2)[Gal(a1-3)]Gal(b1-3)GalNAc(a1-3)Gal | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)-α-D-GalpNAc-(1→3)-D-Gal | WURCS=2.0/5,5,4/[u2112h][a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-4-5/a3-b1_b3-c1_c2-d1_c3-e1 | RES,1b:b-dgal-HEX-1:5,2b:a-dgal-HEX-1:5,3s:n-acetyl,4b:b-dgal-HEX-1:5,5b:a-lgal-HEX-1:5|6:d,6b:a-dgal-HEX-1:5,LIN,1:1o(3+1)2d,2:2d(2+1)3n,3:2o(3+1)4d,4:4o(2+1)5d,5:4o(3+1)6d, | O1C(O)[C@H](O)[C@@H](O[C@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H]3O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO | null | 853.31 | null | Fuc(a1-2);Gal(a1-3) | {'Gal': 3, 'Fuc': 1, 'GalNAc': 1} | {'Hex': 3, 'HexNAc': 1, 'dHex': 1} | 1 | 5 | 6 | 11.52024 | {'Cluster 0': 42.45, 'Cluster 1': 20.58, 'Cluster 2': 19.19, 'Cluster 3': 14.43, 'Cluster 4': 3.36} | {'Cluster 0': 46.7387, 'Cluster 1': 16.895, 'Cluster 2': 15.4218, 'Cluster 3': 4.3662, 'Cluster 4': 3.743, 'Cluster 5': 2.873, 'Cluster 6': 1.8998, 'Cluster 7': 1.4332, 'Cluster 8': 1.4165, 'Cluster 9': 1.3832, 'Cluster 10': 0.7866, 'Cluster 11': 0.7233, 'Cluster 12': 0.5766, 'Cluster 13': 0.5666, 'Cluster 14': 0.46, '... | {'2': 0.5197765008115776, '3': 0.3190735608651547, '4': 0.2910673679731005, '5': 0.25100635291810974, '6': 0.2582734331881999, '7': 0.2530186128173647, '8': 0.2384940851249786} | {'0': [4, 8, 9, 17], '1': [5, 12, 14], '2': [3, 11], '3': [1, 2, 7, 16, 18], '4': [0, 6, 10, 13, 15]} | {'explained_variance_ratio': [0.11472986048367198, 0.1091934846736833, 0.076219056855919, 0.05941115099876603, 0.045043548260352145, 0.038600832363488755, 0.0364488191676119, 0.029994061652499727, 0.026103999925305144, 0.023485653333983805], 'cumulative_variance': [0.11472986048367198, 0.2239233451573553, 0.30014240201... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-2[DGalpa1-3]DGalpb1-3DGalpNAca1-3DGalpa1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1-3)GalNAc(a1-3)Gal(a1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)-α-D-GalpNAc-(1→3)-α-D-Galp-(1→ | G62856KL | WURCS=2.0/4,5,4/[a2112h-1a_1-5][a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-1/a3-b1_b3-c1_c2-d1_c3-e1 | LFucpa1-2[DGalpa1-3]DGalpb1-3DGalpNAca1-3DGalpb1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1-3)GalNAc(a1-3)Gal(b1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)-α-D-GalpNAc-(1→3)-β-D-Galp-(1→ | G25853LD | WURCS=2.0/4,5,4/[a2112h-1b_1-5][a2112h-1a_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-1-3-4/a3-b1_b3-c1_c2-d1_c3-e1 | null | null | O-Glycan | {'GAL4-FUC6': {'2': {'phi': -66.28, 'psi': 138.44, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -74.85, 'psi': 132.09, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -61.66, 'psi': 142.8, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -57.1, 'psi': 137.38, 'strain': 1.173, 'linkage': '1-2'}, '6': {'phi': -86.81... | {'GAL4-FUC6': {'2': {'phi': -66.28, 'psi': 138.44, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -74.85, 'psi': 132.07, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -61.61, 'psi': 142.86, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -57.15, 'psi': 137.43, 'strain': 1.173, 'linkage': '1-2'}, '6': {'phi': -86.... | {'GAL4-FUC6': {'2': {'phi': -66.28, 'psi': 138.44, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -74.85, 'psi': 132.09, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -61.66, 'psi': 142.8, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -57.1, 'psi': 137.38, 'strain': 1.173, 'linkage': '1-2'}, '6': {'phi': -86.81... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00248/snfg.svg | ./torsion_data/GS00248_torsion_data.txt | {'Cluster 0': {'count': 10314, '3_2_phi_mean': -74.4, '3_2_psi_mean': 117.99, '4_3_phi_mean': -75.41, '4_3_psi_mean': -16.08, '3_2_phi_std': 13.72, '3_2_psi_std': 15.45, '4_3_phi_std': 18.04, '4_3_psi_std': 164.43}, 'Cluster 1': {'count': 6711, '3_2_phi_mean': -69.36, '3_2_psi_mean': 124.59, '4_3_phi_mean': -77.0, '4_3... | G99019LG | GS00248 | DGalpb1-6DGalpb1-4DGlcpa1-OH | DGalpb1-6DGalpb1-4DGlcp | Gal(b1-6)Gal(b1-4)Glc | β-D-Galp-(1→6)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/2,3,2/[u2122h][a2112h-1b_1-5]/1-2-2/a4-b1_b6-c1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2o(6+1)3d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H](O)[C@H](O)[C@H]2O)[C@H]1CO | null | 504.17 | null | Gal(b1-6) | {'Gal': 2, 'Glc': 1} | {'Hex': 3} | 7 | 11 | 16 | 8.56288 | {'Cluster 0': 34.38, 'Cluster 1': 22.37, 'Cluster 2': 17.45, 'Cluster 3': 16.39, 'Cluster 4': 9.42} | {'Cluster 0': 51.5648, 'Cluster 1': 24.9608, 'Cluster 2': 12.2754, 'Cluster 3': 3.323, 'Cluster 4': 2.6897, 'Cluster 5': 2.2998, 'Cluster 6': 1.0099, 'Cluster 7': 0.8766, 'Cluster 8': 0.8366, 'Cluster 9': 0.1633} | {'2': 0.5024581339291923, '3': 0.47684759001416893, '4': 0.46710047639713953, '5': 0.44157347521786794, '6': 0.42335281189957025, '7': 0.4408047437620694, '8': 0.3405576420120147} | {'0': [3, 6], '1': [8], '2': [0], '3': [1, 2, 4, 5, 9], '4': [7]} | {'explained_variance_ratio': [0.2633873534758156, 0.08069488801661195, 0.07709447455905763, 0.055723774481100136, 0.046240848065917335, 0.032629222224021336, 0.026655337768316197, 0.017589261246090802, 0.017088229496640187, 0.01460562364985052], 'cumulative_variance': [0.2633873534758156, 0.34408224149242755, 0.4211767... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-6DGalpb1-4DGlcpa1-OH | Gal(b1-6)Gal(b1-4)Glc(a1- | β-D-Galp-(1→6)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G78961SJ | WURCS=2.0/2,3,2/[a2122h-1a_1-5][a2112h-1b_1-5]/1-2-2/a4-b1_b6-c1 | DGalpb1-6DGalpb1-4DGlcpb1-OH | Gal(b1-6)Gal(b1-4)Glc(b1- | β-D-Galp-(1→6)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G60125IW | WURCS=2.0/2,3,2/[a2122h-1b_1-5][a2112h-1b_1-5]/1-2-2/a4-b1_b6-c1 | null | null | null | {'GLC2-GAL3': {'2': {'phi': -75.15, 'psi': 125.05, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -68.4, 'psi': 131.84, 'strain': 0.267, 'linkage': '1-4'}, '4': {'phi': -78.02, 'psi': 124.47, 'strain': 0.008, 'linkage': '1-4'}, '5': {'phi': -68.96, 'psi': 110.84, 'strain': 0.16, 'linkage': '1-4'}, '6': {'phi': -76.18... | {'GLC2-GAL3': {'2': {'phi': -75.15, 'psi': 125.05, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -68.32, 'psi': 131.75, 'strain': 0.267, 'linkage': '1-4'}, '4': {'phi': -77.99, 'psi': 124.43, 'strain': 0.008, 'linkage': '1-4'}, '5': {'phi': -68.93, 'psi': 110.82, 'strain': 0.16, 'linkage': '1-4'}, '6': {'phi': -76.2... | {'GLC2-GAL3': {'2': {'phi': -75.15, 'psi': 125.05, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -68.4, 'psi': 131.84, 'strain': 0.267, 'linkage': '1-4'}, '4': {'phi': -78.02, 'psi': 124.47, 'strain': 0.008, 'linkage': '1-4'}, '5': {'phi': -68.96, 'psi': 110.84, 'strain': 0.16, 'linkage': '1-4'}, '6': {'phi': -76.18... | {'taxon_id': '5073', 'taxon_label': 'Penicillium', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G99019LG'}]};{'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G99019LG'}]}... | 3 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G99019LG', 'url': 'https://glycosmos.org/glycans/show/G99019LG'}], 'common_name': 'Bovine', 'glygen_name': 'Bovine', 'reference_species': 'Bos taurus [9913]'};{'taxid': 9606, 'name': 'Homo sapiens', 'ann... | {'type': {'name': 'Human Milk Oligosaccharide'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G99019LG', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G99019... | {'id': '491869846', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491869846', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '2525', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10339', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+10339', 'database': 'Ca... | 658.34 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | Hex(3) % 504.1690352 | freeEnd--?D-Glc--4b1D-Gal,p--6b1D-Gal,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G09269CO', 'relationship': 'ancestor'};{'related_accession': 'G25303QF', 'relationship': 'ancestor'};{'related_accession': 'G39365VM', 'relationship': 'ancestor'};{'related_accession': 'G46456ZC', 'relationship': 'ancestor'};{'related_accession': 'G51158NS', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00249/snfg.svg | ./torsion_data/GS00249_torsion_data.txt | {'Cluster 0': {'count': 8613, '3_2_phi_mean': -77.78, '3_2_psi_mean': -50.26, '6_2_phi_mean': -74.89, '6_2_psi_mean': 109.11, '4_3_phi_mean': -70.51, '4_3_psi_mean': -109.14, '5_4_phi_mean': -72.1, '5_4_psi_mean': 140.12, '7_6_phi_mean': -80.69, '7_6_psi_mean': 86.58, '8_7_phi_mean': -74.78, '8_7_psi_mean': -115.4, '3_... | G14375KO | GS00249 | DGalpb1-4DGlcpNAcb1-3DGalpb1-3[LFucpa1-2DGalpb1-4DGlcpNAcb1-6]DGalpNAcb1-OH | DGalpb1-4DGlcpNAcb1-3DGalpb1-3[LFucpa1-2DGalpb1-4DGlcpNAcb1-6]DGalpNAc | Gal(b1-4)GlcNAc(b1-3)Gal(b1-3)[Fuc(a1-2)Gal(b1-4)GlcNAc(b1-6)]GalNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/4,7,6/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-3-2-4/a3-b1_a6-e1_b3-c1_c4-d1_e4-f1_f2-g1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:b-dglc-HEX-1:5,5s:n-acetyl,6b:b-dgal-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(3+1)4d,4:4d(2+1)5n,5:4o(4+1)6d,6:1o(6+1)7d,7:7d(2+1)8n,8:7o(4+1)9d,9:9o(2+1)10d, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H]2O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H](O)[C@H]2NC(C)=O | null | 1,259.47 | {'motif': 'G00034MO', 'motif_label': 'O-Glycan core 2 fuzzy'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Fuc(a1-2);Gal(b1-4) | {'Gal': 3, 'GlcNAc': 2, 'Fuc': 1, 'GalNAc': 1} | {'Hex': 3, 'HexNAc': 3, 'dHex': 1} | 1 | 5 | 6 | 12.622954 | {'Cluster 0': 28.71, 'Cluster 1': 22.01, 'Cluster 2': 18.61, 'Cluster 3': 18.5, 'Cluster 4': 12.17} | {'Cluster 0': 25.5541, 'Cluster 1': 21.1379, 'Cluster 2': 14.5852, 'Cluster 3': 6.8093, 'Cluster 4': 6.2294, 'Cluster 5': 4.2062, 'Cluster 6': 3.6763, 'Cluster 7': 3.133, 'Cluster 8': 2.1398, 'Cluster 9': 1.9031, 'Cluster 10': 1.8132, 'Cluster 11': 1.7798, 'Cluster 12': 1.6565, 'Cluster 13': 1.3965, 'Cluster 14': 1.016... | {'2': 0.43017714046749755, '3': 0.2970413663649748, '4': 0.23303330891081336, '5': 0.26248544518725697, '6': 0.2682528392341802, '7': 0.2676026575293794, '8': 0.25879295956689546} | {'0': [2, 3, 4, 7, 10, 13, 19, 20], '1': [1, 5, 6, 15, 16, 21], '2': [9, 12, 18, 22], '3': [0, 11, 17], '4': [8, 14]} | {'explained_variance_ratio': [0.2672521381584665, 0.07325094947957941, 0.065933443190203, 0.05028393434153073, 0.0338884607564769, 0.028357855573575685, 0.027396896587463557, 0.025327415906415178, 0.024579022363931953, 0.02148261400342127], 'cumulative_variance': [0.2672521381584665, 0.34050308763804593, 0.406436530828... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-3DGalpb1-3[LFucpa1-2DGalpb1-4DGlcpNAcb1-6]DGalpNAca1-OH | Gal(b1-4)GlcNAc(b1-3)Gal(b1-3)[Fuc(a1-2)Gal(b1-4)GlcNAc(b1-6)]GalNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G81825YE | WURCS=2.0/4,7,6/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-3-2-4/a3-b1_a6-e1_b3-c1_c4-d1_e4-f1_f2-g1 | DGalpb1-4DGlcpNAcb1-3DGalpb1-3[LFucpa1-2DGalpb1-4DGlcpNAcb1-6]DGalpNAcb1-OH | Gal(b1-4)GlcNAc(b1-3)Gal(b1-3)[Fuc(a1-2)Gal(b1-4)GlcNAc(b1-6)]GalNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G74702CZ | WURCS=2.0/4,7,6/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-3-2-4/a3-b1_a6-e1_b3-c1_c4-d1_e4-f1_f2-g1 | null | null | null | {'GAL4-FUC5': {'2': {'phi': -69.28, 'psi': 148.99, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -79.41, 'psi': 131.29, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -67.17, 'psi': 138.03, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -66.5, 'psi': 149.2, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -64.41... | {'GAL4-FUC5': {'2': {'phi': -69.28, 'psi': 148.99, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -79.47, 'psi': 131.29, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -67.19, 'psi': 138.04, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -66.47, 'psi': 149.21, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -64.... | {'GAL4-FUC5': {'2': {'phi': -69.28, 'psi': 148.99, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -79.41, 'psi': 131.29, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -67.17, 'psi': 138.03, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -66.5, 'psi': 149.2, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -64.41... | null | 7 | null | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 2'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G14375KO', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491934988', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491934988', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G14375KO', 'url': 'https://glytoucan.org/Structures/Glycans/G14375KO', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G14375KO', 'url': 'https://sandbox.... | 1,567.81 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 281 | Saccharide | HexNAc(3)Hex(3)dHex(1) % 1259.46506189 | freeEnd--?D-GalNAc(--3b1D-Gal,p--3b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000036', 'name': 'Blood group H (type 2)', 'keywords': 'Blood group H; Blood group type 2'} | {'related_accession': 'G36379GD', 'relationship': 'ancestor'};{'related_accession': 'G42791PH', 'relationship': 'ancestor'};{'related_accession': 'G55710AV', 'relationship': 'ancestor'};{'related_accession': 'G80475RE', 'relationship': 'ancestor'};{'related_accession': 'G89990JE', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00250/snfg.svg | ./torsion_data/GS00250_torsion_data.txt | {'Cluster 0': {'count': 10035, '3_2_phi_mean': -75.17, '3_2_psi_mean': 92.15, '4_3_phi_mean': -78.62, '4_3_psi_mean': -13.59, '9_3_phi_mean': -79.89, '9_3_psi_mean': 104.22, '5_4_phi_mean': -76.25, '5_4_psi_mean': -119.26, '6_5_phi_mean': -79.91, '6_5_psi_mean': 107.21, '7_6_phi_mean': -67.61, '7_6_psi_mean': 129.7, '8... | G97921YP | GS00250 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3]DGalpb1-4DGlcp | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)]Gal(b1-4)Glc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,10,9/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3-2-3-2-4/a4-b1_b3-c1_b6-f1_c3-d1_c4-e1_f4-g1_g3-h1_h3-i1_i2-j1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:a-lgal-HEX-1:5|6:d,6b:b-dgal-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:b-dgal-HEX-1:5,13b:a-lgal-HEX-1:5|6:d,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:3o(4+1)6d,6:2o(6+1)7d,7:7d(2+1)8n,... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O[C@@H]7O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]7O)[C@H]5NC(C)=O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO... | null | 1,729.63 | {'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00294TN', 'motif_label': 'Blood group H (type 1)'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Fuc(a1-2);Gal(b1-4) | {'Gal': 4, 'GlcNAc': 3, 'Fuc': 2, 'Glc': 1} | {'Hex': 5, 'HexNAc': 3, 'dHex': 2} | 29 | 30 | 49 | 12.577606 | {'Cluster 0': 33.45, 'Cluster 1': 28.06, 'Cluster 2': 14.33, 'Cluster 3': 13.92, 'Cluster 4': 10.24} | {'Cluster 0': 16.355, 'Cluster 1': 16.1151, 'Cluster 2': 13.242, 'Cluster 3': 11.3222, 'Cluster 4': 7.166, 'Cluster 5': 5.9327, 'Cluster 6': 5.6194, 'Cluster 7': 4.7562, 'Cluster 8': 4.7529, 'Cluster 9': 3.053, 'Cluster 10': 2.7131, 'Cluster 11': 2.5731, 'Cluster 12': 1.8098, 'Cluster 13': 1.4565, 'Cluster 14': 0.9399,... | {'2': 0.5179165449060557, '3': 0.36753418347940753, '4': 0.3817793783404552, '5': 0.40249467353038965, '6': 0.43319040117730834, '7': 0.38985047025651326, '8': 0.4046216298772986} | {'0': [1, 3, 8, 9, 10, 12, 14, 20, 21, 22], '1': [6, 18, 19], '2': [4, 5, 16], '3': [0, 7, 13], '4': [2, 11, 15, 17]} | {'explained_variance_ratio': [0.35042331791967724, 0.08938393393876706, 0.056525119336085713, 0.04619965215552664, 0.03685686073866272, 0.03394406260915827, 0.02279471658691373, 0.018317266007876032, 0.0156512955246239, 0.015279651460752148], 'cumulative_variance': [0.35042331791967724, 0.43980725185844427, 0.496332371... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)]Gal(b1-4)Glc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G79247ZX | WURCS=2.0/4,10,9/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3-2-3-2-4/a4-b1_b3-c1_b6-f1_c3-d1_c4-e1_f4-g1_g3-h1_h3-i1_i2-j1 | LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3]DGalpb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)]Gal(b1-4)Glc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)[α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G70502VR | WURCS=2.0/4,10,9/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3-2-3-2-4/a4-b1_b3-c1_b6-f1_c3-d1_c4-e1_f4-g1_g3-h1_h3-i1_i2-j1 | null | null | null | {'GAL7-FUC8': {'2': {'phi': -72.47, 'psi': 123.76, 'strain': 1.159, 'linkage': '1-2'}, '3': {'phi': -65.72, 'psi': 144.27, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -64.94, 'psi': 135.83, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -75.73, 'psi': 141.01, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -64.... | {'GAL7-FUC8': {'2': {'phi': -72.47, 'psi': 123.76, 'strain': 1.159, 'linkage': '1-2'}, '3': {'phi': -65.76, 'psi': 144.33, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -64.9, 'psi': 135.84, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -75.73, 'psi': 140.99, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -64.2... | {'GAL7-FUC8': {'2': {'phi': -72.47, 'psi': 123.76, 'strain': 1.159, 'linkage': '1-2'}, '3': {'phi': -65.72, 'psi': 144.27, 'strain': 0.394, 'linkage': '1-2'}, '4': {'phi': -64.94, 'psi': 135.83, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -75.73, 'psi': 141.01, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -64.... | null | 10 | null | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Neo-lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G97921YP', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G97921... | {'id': '491971873', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491971873', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G97921YP', 'url': 'https://glytoucan.org/Structures/Glycans/G97921YP', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G97921YP', 'url': 'https://sandbox.... | 2,150.1 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 196 | Saccharide | HexNAc(3)Hex(5)dHex(2) % 1729.62861776 | freeEnd--?D-Glc--4b1D-Gal,p(--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcNAc,p--3b1D-Gal,p--2a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Le... | {'related_accession': 'G26591JV', 'relationship': 'ancestor'};{'related_accession': 'G27622TD', 'relationship': 'ancestor'};{'related_accession': 'G29299MO', 'relationship': 'ancestor'};{'related_accession': 'G67008OT', 'relationship': 'ancestor'};{'related_accession': 'G88823RD', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00251/snfg.svg | ./torsion_data/GS00251_torsion_data.txt | {'Cluster 0': {'count': 13537, '3_2_phi_mean': -78.05, '3_2_psi_mean': -121.5, '4_3_phi_mean': -77.8, '4_3_psi_mean': -120.63, '5_4_phi_mean': 72.41, '5_4_psi_mean': -29.94, '7_4_phi_mean': 71.65, '7_4_psi_mean': 134.39, '6_5_phi_mean': -80.52, '6_5_psi_mean': -86.1, '8_7_phi_mean': -82.39, '8_7_psi_mean': -87.46, '9_8... | G52358FD | GS00251 | DGalpNAcb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpNAcb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | GalNAc(b1-4)GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-GalpNAc-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/5,8,7/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-5-4-2/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10s:n-acetyl,11b:a-dman-HEX-1:5,12b:b-dglc-HEX-1:5,13s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6o(2+1)7d,7:7d(2+1)8n,8:7o(4+1)9d,9:9d(2+1... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6NC(C)=O)[C@H](O)[C@H]5NC(C)=O)[C@... | null | 1,519.57 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G31736BK', 'motif_label': 'LacdiNAc'};{'motif': 'G31736BK', 'motif_label': 'LDN'} | GalNAc(b1-4);GlcNAc(b1-2) | {'GlcNAc': 4, 'Man': 3, 'GalNAc': 1} | {'Hex': 3, 'HexNAc': 5} | 27 | 26 | 41 | 13.312628 | {'Cluster 0': 33.84, 'Cluster 1': 23.47, 'Cluster 2': 21.16, 'Cluster 3': 17.66, 'Cluster 4': 3.87} | {'Cluster 0': 20.8729, 'Cluster 1': 17.0583, 'Cluster 2': 14.771, 'Cluster 3': 8.7941, 'Cluster 4': 8.7341, 'Cluster 5': 7.6067, 'Cluster 6': 5.362, 'Cluster 7': 3.5446, 'Cluster 8': 2.9672, 'Cluster 9': 1.6348, 'Cluster 10': 1.5473, 'Cluster 11': 1.3974, 'Cluster 12': 1.2299, 'Cluster 13': 1.0274, 'Cluster 14': 0.9524... | {'2': 0.3229790662167019, '3': 0.3346667610844092, '4': 0.3178294687511503, '5': 0.24802924725198117, '6': 0.20001452916069185, '7': 0.27041009928189536, '8': 0.2524401971905801} | {'0': [4, 8, 17, 22, 24], '1': [0, 3, 13, 14, 15], '2': [7, 16, 18], '3': [1, 2, 9, 10, 11, 12, 19, 23, 25, 26], '4': [5, 6, 20, 21]} | {'explained_variance_ratio': [0.13070056039649067, 0.11891205373156748, 0.10399100866623409, 0.053995439982739514, 0.04309752130228597, 0.04068250099202128, 0.034741408118911084, 0.025250468338037214, 0.02359100717065243, 0.022041063113211364], 'cumulative_variance': [0.13070056039649067, 0.24961261412805813, 0.3536036... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpNAcb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | GalNAc(b1-4)GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-GalpNAc-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G14383IU | WURCS=2.0/5,8,7/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-5-4-2/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1 | DGalpNAcb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | GalNAc(b1-4)GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-GalpNAc-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G67045LB | WURCS=2.0/4,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-1-2-3-1-4-3-1/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1 | null | null | Biantennary N-Glycan;Complex N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -64.49, 'psi': -81.29, 'strain': 0.758, 'linkage': '1-2'}, '3': {'phi': -105.29, 'psi': -50.5, 'strain': 1.903, 'linkage': '1-2'}, '4': {'phi': -67.92, 'psi': -26.82, 'strain': 2.541, 'linkage': '1-2'}, '5': {'phi': -85.22, 'psi': -89.9, 'strain': 0.373, 'linkage': '1-2'}, '6': {'phi': -93.9... | {'MAN5-NAG6': {'2': {'phi': -64.49, 'psi': -81.29, 'strain': 0.758, 'linkage': '1-2'}, '3': {'phi': -105.3, 'psi': -50.48, 'strain': 1.903, 'linkage': '1-2'}, '4': {'phi': -67.92, 'psi': -26.8, 'strain': 2.541, 'linkage': '1-2'}, '5': {'phi': -85.24, 'psi': -89.93, 'strain': 0.373, 'linkage': '1-2'}, '6': {'phi': -94.0... | {'MAN5-NAG6': {'2': {'phi': -64.49, 'psi': -81.29, 'strain': 0.758, 'linkage': '1-2'}, '3': {'phi': -105.29, 'psi': -50.5, 'strain': 1.903, 'linkage': '1-2'}, '4': {'phi': -67.92, 'psi': -26.82, 'strain': 2.541, 'linkage': '1-2'}, '5': {'phi': -85.22, 'psi': -89.9, 'strain': 0.373, 'linkage': '1-2'}, '6': {'phi': -93.9... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G52358FD'}]} | 8 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G52358FD', 'url': 'https://glycosmos.org/glycans/show/G52358FD'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Biantennary'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G52358FD', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491900748', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491900748', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1781', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '28382', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+28382', 'database': 'Ca... | 1,883.97 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 246 | Saccharide | HexNAc(5)Hex(3) % 1519.56589822 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-GalNAc,p)--6a1D-Man,p--2b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000016', 'name': 'LacdiNAc', 'synonym': 'LDN', 'keywords': "LacdiNAc; N,N'-diacetyllactosediamine"} | {'related_accession': 'G07906WF', 'relationship': 'ancestor'};{'related_accession': 'G21528FH', 'relationship': 'ancestor'};{'related_accession': 'G39900FY', 'relationship': 'ancestor'};{'related_accession': 'G49955PK', 'relationship': 'ancestor'};{'related_accession': 'G49955PK', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00252/snfg.svg | ./torsion_data/GS00252_torsion_data.txt | {'Cluster 0': {'count': 15298, '3_2_phi_mean': -77.9, '3_2_psi_mean': -128.14, '4_3_phi_mean': -88.06, '4_3_psi_mean': -120.62, '5_4_phi_mean': 81.97, '5_4_psi_mean': 87.69, '9_4_phi_mean': 71.51, '9_4_psi_mean': 133.43, '6_5_phi_mean': -84.81, '6_5_psi_mean': -75.92, '7_6_phi_mean': -68.04, '7_6_psi_mean': -107.25, '8... | G51508GQ | GS00252 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,10,9/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-6-5/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h3-i1_h4-j1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:a-lgal-HEX-1:5|6:d,14b:b-dgal-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6o(2+1)7d,7:7... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](... | null | 1,786.65 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Gal(b1-4) | {'GlcNAc': 4, 'Man': 3, 'Gal': 2, 'Fuc': 1} | {'Hex': 5, 'HexNAc': 4, 'dHex': 1} | 31 | 31 | 50 | 12.914383 | {'Cluster 0': 38.24, 'Cluster 1': 29.92, 'Cluster 2': 24.07, 'Cluster 3': 4.51, 'Cluster 4': 3.25} | {'Cluster 0': 37.4888, 'Cluster 1': 7.7592, 'Cluster 2': 7.6242, 'Cluster 3': 6.2544, 'Cluster 4': 6.1369, 'Cluster 5': 6.1169, 'Cluster 6': 4.9345, 'Cluster 7': 4.857, 'Cluster 8': 2.9597, 'Cluster 9': 2.1623, 'Cluster 10': 1.6548, 'Cluster 11': 1.6048, 'Cluster 12': 1.4724, 'Cluster 13': 1.4449, 'Cluster 14': 1.3824,... | {'2': 0.46003512286546283, '3': 0.4463320454154324, '4': 0.42194016956968977, '5': 0.338915385942718, '6': 0.36603981758370535, '7': 0.30138629668209016, '8': 0.27032717533772166} | {'0': [1, 17], '1': [3, 5, 8, 9, 10, 11, 18, 19, 23, 24], '2': [4, 6, 12, 15, 22], '3': [0, 7, 14, 20], '4': [2, 13, 16, 21]} | {'explained_variance_ratio': [0.18087658116400848, 0.11959647399808952, 0.08914199152717502, 0.06936890438806002, 0.04708537412401255, 0.03758382558386075, 0.025391529973442722, 0.01866040209984444, 0.016985199382616417, 0.015246836001522952], 'cumulative_variance': [0.18087658116400848, 0.300473055162098, 0.3896150466... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G13047JW | WURCS=2.0/6,10,9/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-6-5/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h3-i1_h4-j1 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G01935FK | WURCS=2.0/5,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-3-1-5-4/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h3-i1_h4-j1 | null | null | Biantennary N-Glycan;Complex N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -93.78, 'psi': -65.54, 'strain': 0.567, 'linkage': '1-2'}, '3': {'phi': -81.86, 'psi': -62.9, 'strain': 0.34, 'linkage': '1-2'}, '4': {'phi': -61.86, 'psi': -74.46, 'strain': 0.558, 'linkage': '1-2'}, '5': {'phi': -74.58, 'psi': -80.03, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -93.79... | {'MAN5-NAG6': {'2': {'phi': -93.78, 'psi': -65.54, 'strain': 0.567, 'linkage': '1-2'}, '3': {'phi': -81.87, 'psi': -62.9, 'strain': 0.34, 'linkage': '1-2'}, '4': {'phi': -61.81, 'psi': -74.47, 'strain': 0.558, 'linkage': '1-2'}, '5': {'phi': -74.62, 'psi': -79.96, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -93.79... | {'MAN5-NAG6': {'2': {'phi': -93.78, 'psi': -65.54, 'strain': 0.567, 'linkage': '1-2'}, '3': {'phi': -81.86, 'psi': -62.9, 'strain': 0.34, 'linkage': '1-2'}, '4': {'phi': -61.86, 'psi': -74.46, 'strain': 0.558, 'linkage': '1-2'}, '5': {'phi': -74.58, 'psi': -80.03, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -93.79... | {'taxon_id': '3052731', 'taxon_label': 'Respirovirus muris', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G51508GQ'}]} | 10 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Biantennary'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G51508GQ', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491854685', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491854685', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '16246', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '1921', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+1921', 'database': 'Car... | 2,221.14 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 196 | Saccharide | HexNAc(4)Hex(5)dHex(1) % 1786.65008149 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G01924ZE', 'relationship': 'ancestor'};{'related_accession': 'G09171UI', 'relationship': 'ancestor'};{'related_accession': 'G10567NI', 'relationship': 'ancestor'};{'related_accession': 'G76679QH', 'relationship': 'ancestor'};{'related_accession': 'G83555HU', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00253/snfg.svg | ./torsion_data/GS00253_torsion_data.txt | {'Cluster 0': {'count': 11236, '3_2_phi_mean': -79.78, '3_2_psi_mean': -127.85, '4_3_phi_mean': -85.55, '4_3_psi_mean': -127.24, '5_4_phi_mean': 79.1, '5_4_psi_mean': 91.66, '9_4_phi_mean': 72.32, '9_4_psi_mean': 137.51, '6_5_phi_mean': -76.13, '6_5_psi_mean': -38.92, '7_5_phi_mean': -86.2, '7_5_psi_mean': -72.85, '8_7... | G51537NW | GS00253 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/5,10,9/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-4-2-5-2/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6o(2... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C... | A3G2 | 1,843.67 | null | Gal(b1-4);GlcNAc(b1-6) | {'GlcNAc': 5, 'Man': 3, 'Gal': 2} | {'Hex': 5, 'HexNAc': 5} | 1 | 5 | 6 | 13.650624 | {'Cluster 0': 28.09, 'Cluster 1': 26.81, 'Cluster 2': 18.77, 'Cluster 3': 17.28, 'Cluster 4': 9.05} | {'Cluster 0': 22.0503, 'Cluster 1': 13.1637, 'Cluster 2': 12.1338, 'Cluster 3': 8.9716, 'Cluster 4': 6.6818, 'Cluster 5': 5.422, 'Cluster 6': 4.5095, 'Cluster 7': 4.2171, 'Cluster 8': 4.1921, 'Cluster 9': 3.3297, 'Cluster 10': 3.2922, 'Cluster 11': 2.5572, 'Cluster 12': 2.1423, 'Cluster 13': 1.8648, 'Cluster 14': 1.267... | {'2': 0.41043665660756945, '3': 0.29657936147854513, '4': 0.3098472188005185, '5': 0.22747095483012836, '6': 0.2156971255849297, '7': 0.23335098174719004, '8': 0.25477628844442235} | {'0': [6, 21, 23], '1': [3, 8, 24, 26], '2': [0, 1, 9, 10, 18, 27], '3': [2, 5, 11, 13, 17, 19, 28], '4': [4, 7, 12, 14, 15, 16, 20, 22, 25]} | {'explained_variance_ratio': [0.19367212539440617, 0.08352704679011796, 0.0715824148885202, 0.06279004162760378, 0.056290407064918516, 0.0484416003900096, 0.028611383881374897, 0.02169261872888114, 0.020646390943557125, 0.017416125275960686], 'cumulative_variance': [0.19367212539440617, 0.27719917218452417, 0.348781587... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G38958GL | WURCS=2.0/5,10,9/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-4-2-5-2/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G78803YD | WURCS=2.0/4,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-3-1-4-1/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1 | A3G2 | null | N-Glycan | {'MAN5-NAG7': {'2': {'phi': -88.51, 'psi': -66.01, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -94.06, 'psi': -74.16, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -49.55, 'psi': -63.57, 'strain': 2.783, 'linkage': '1-2'}, '5': {'phi': -82.16, 'psi': -68.42, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -71.62... | {'MAN5-NAG7': {'2': {'phi': -88.51, 'psi': -66.01, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -94.02, 'psi': -74.18, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -49.58, 'psi': -63.58, 'strain': 2.783, 'linkage': '1-2'}, '5': {'phi': -82.1, 'psi': -68.49, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -71.57,... | {'MAN5-NAG7': {'2': {'phi': -88.51, 'psi': -66.01, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -94.06, 'psi': -74.16, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -49.55, 'psi': -63.57, 'strain': 2.783, 'linkage': '1-2'}, '5': {'phi': -82.16, 'psi': -68.42, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -71.62... | null | 10 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G51537NW', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': 'G51537NW', 'url': 'https://glytoucan.org/Structures/Glycans/G51537NW', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G51537NW', 'url': 'https://sandbox.glyomics.org/explore.html?G51537NW', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G51537NW', 'url': 'https://gnome.glyom... | 2,292.17 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 196 | Saccharide | HexNAc(5)Hex(5) % 1843.67154523 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G19506LX', 'relationship': 'ancestor'};{'related_accession': 'G31831PV', 'relationship': 'ancestor'};{'related_accession': 'G65184UU', 'relationship': 'ancestor'};{'related_accession': 'G65184UU', 'relationship': 'basecomposition'};{'related_accession': 'G31831PV', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00254/snfg.svg | ./torsion_data/GS00254_torsion_data.txt | {'Cluster 0': {'count': 12629, '3_2_phi_mean': -68.88, '3_2_psi_mean': -106.36, '4_3_phi_mean': 61.93, '4_3_psi_mean': 62.91, '5_3_phi_mean': -69.02, '5_3_psi_mean': 138.54, '3_2_phi_std': 7.72, '3_2_psi_std': 10.78, '4_3_phi_std': 9.91, '4_3_psi_std': 12.76, '5_3_phi_std': 7.8, '5_3_psi_std': 7.65}, 'Cluster 1': {'cou... | G15003XX | GS00254 | LFucpa1-2[DGalpa1-3]DGalpb1-3DGalpNAca1-OH | LFucpa1-2[DGalpa1-3]DGalpb1-3DGalpNAc | Fuc(a1-2)[Gal(a1-3)]Gal(b1-3)GalNAc | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)-D-GalNAc | WURCS=2.0/4,4,3/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-4/a3-b1_b2-c1_b3-d1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-lgal-HEX-1:5|6:d,5b:a-dgal-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(2+1)4d,4:3o(3+1)5d, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H]2O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@@H](O)[C@H]1CO | null | 691.25 | {'motif': 'G24432YB', 'motif_label': 'a-Gal antigen'};{'motif': 'G00032MO', 'motif_label': 'O-Glycan core 1 fuzzy'} | Fuc(a1-2);Gal(a1-3) | {'Gal': 2, 'Fuc': 1, 'GalNAc': 1} | {'Hex': 2, 'HexNAc': 1, 'dHex': 1} | 10 | 13 | 20 | 9.635454 | {'Cluster 0': 42.09, 'Cluster 1': 34.99, 'Cluster 2': 12.85, 'Cluster 3': 8.09, 'Cluster 4': 1.97} | {'Cluster 0': 69.8463, 'Cluster 1': 13.0054, 'Cluster 2': 6.416, 'Cluster 3': 3.6863, 'Cluster 4': 3.663, 'Cluster 5': 0.9732, 'Cluster 6': 0.7766, 'Cluster 7': 0.6166, 'Cluster 8': 0.6099, 'Cluster 9': 0.2, 'Cluster 10': 0.11, 'Cluster 11': 0.05, 'Cluster 12': 0.0467} | {'2': 0.8139433110667132, '3': 0.3760997630285999, '4': 0.3938721873038376, '5': 0.3622449443340591, '6': 0.31837655472036225, '7': 0.30401886805731754, '8': 0.28029613086278965} | {'0': [8], '1': [1, 2, 4, 5, 9, 10], '2': [7, 12], '3': [0, 6, 11], '4': [3]} | {'explained_variance_ratio': [0.18999273033715894, 0.09863410898863312, 0.08665066964411518, 0.04719953161601304, 0.044960081764933636, 0.028247536336889454, 0.02593990564884986, 0.021041154805327006, 0.02031489805776519, 0.01845156365067695], 'cumulative_variance': [0.18999273033715894, 0.28862683932579203, 0.37527750... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-2[DGalpa1-3]DGalpb1-3DGalpNAca1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1-3)GalNAc(a1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)-α-D-GalpNAc-(1→ | G88313DY | WURCS=2.0/4,4,3/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-4/a3-b1_b2-c1_b3-d1 | LFucpa1-2[DGalpa1-3]DGalpb1-3DGalpNAcb1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1-3)GalNAc(b1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)-β-D-GalpNAc-(1→ | G99454KR | WURCS=2.0/4,4,3/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-4/a3-b1_b2-c1_b3-d1 | null | null | O-Glycan | {'GAL3-FUC5': {'2': {'phi': -62.58, 'psi': 130.14, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -65.21, 'psi': 138.2, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -71.6, 'psi': 143.83, 'strain': 0.496, 'linkage': '1-2'}, '5': {'phi': -59.49, 'psi': 144.21, 'strain': 1.49, 'linkage': '1-2'}, '6': {'phi': -74.33,... | {'GAL3-FUC5': {'2': {'phi': -62.58, 'psi': 130.14, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -65.15, 'psi': 138.13, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -71.61, 'psi': 143.86, 'strain': 0.496, 'linkage': '1-2'}, '5': {'phi': -59.55, 'psi': 144.23, 'strain': 1.49, 'linkage': '1-2'}, '6': {'phi': -74.2... | {'GAL3-FUC5': {'2': {'phi': -62.58, 'psi': 130.14, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -65.21, 'psi': 138.2, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -71.6, 'psi': 143.83, 'strain': 0.496, 'linkage': '1-2'}, '5': {'phi': -59.49, 'psi': 144.21, 'strain': 1.49, 'linkage': '1-2'}, '6': {'phi': -74.33,... | null | 4 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G88313DY', 'url': 'https://www.glygen.org/glycan/G88313DY'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 1'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G15003XX', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491842998', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491842998', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '3695', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '32807', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+32807', 'database': 'Ca... | 873.46 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(1)Hex(2)dHex(1) % 691.253493175 | freeEnd--?D-GalNAc--3b1D-Gal,p(--2a1L-Fuc,p)--3a1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000015', 'name': 'a-Gal antigen', 'synonym': 'alpha-Gal antigen'};{'id': 'GGM.000201', 'name': 'B antigen (type 3)', 'keywords': 'Blood group B; Blood group type 3'} | {'related_accession': 'G06999WI', 'relationship': 'ancestor'};{'related_accession': 'G11235SR', 'relationship': 'ancestor'};{'related_accession': 'G29215GM', 'relationship': 'ancestor'};{'related_accession': 'G47718YD', 'relationship': 'ancestor'};{'related_accession': 'G55091DF', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00255/snfg.svg | ./torsion_data/GS00255_torsion_data.txt | {'Cluster 0': {'count': 9698, '3_2_phi_mean': -69.72, '3_2_psi_mean': -107.22, '4_3_phi_mean': 59.72, '4_3_psi_mean': 62.76, '5_3_phi_mean': -68.98, '5_3_psi_mean': 139.26, '3_2_phi_std': 7.59, '3_2_psi_std': 11.38, '4_3_phi_std': 9.06, '4_3_psi_std': 10.2, '5_3_phi_std': 7.63, '5_3_psi_std': 8.28}, 'Cluster 1': {'coun... | G15626ED | GS00255 | LFucpa1-2[DGalpNAca1-3]DGalpb1-3DGalpNAca1-OH | LFucpa1-2[DGalpNAca1-3]DGalpb1-3DGalpNAc | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1-3)GalNAc | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)-D-GalNAc | WURCS=2.0/4,4,3/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3-4/a3-b1_b2-c1_b3-d1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-lgal-HEX-1:5|6:d,5b:a-dgal-HEX-1:5,6s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(2+1)4d,4:3o(3+1)5d,5:5d(2+1)6n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3NC(C)=O)[C@H]2O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@@H](O)[C@H]1CO | null | 732.28 | {'motif': 'G00032MO', 'motif_label': 'O-Glycan core 1 fuzzy'} | Fuc(a1-2);GalNAc(a1-3) | {'GalNAc': 2, 'Fuc': 1, 'Gal': 1} | {'Hex': 1, 'HexNAc': 2, 'dHex': 1} | 11 | 13 | 20 | 10.857384 | {'Cluster 0': 32.32, 'Cluster 1': 27.16, 'Cluster 2': 21.53, 'Cluster 3': 18.02, 'Cluster 4': 0.97} | {'Cluster 0': 45.6654, 'Cluster 1': 26.374, 'Cluster 2': 9.0991, 'Cluster 3': 8.2492, 'Cluster 4': 7.6526, 'Cluster 5': 1.2665, 'Cluster 6': 0.7833, 'Cluster 7': 0.2766, 'Cluster 8': 0.2, 'Cluster 9': 0.1333, 'Cluster 10': 0.07, 'Cluster 11': 0.06, 'Cluster 12': 0.06, 'Cluster 13': 0.04, 'Cluster 14': 0.0367, 'Cluster ... | {'2': 0.6134854335204762, '3': 0.30694618666760276, '4': 0.2927362772741526, '5': 0.28830934303866673, '6': 0.26253865216050126, '7': 0.23668719048477874, '8': 0.23632573543975027} | {'0': [7, 14], '1': [6, 8, 15], '2': [1, 2, 4, 5, 9, 11, 13], '3': [0, 10, 12], '4': [3]} | {'explained_variance_ratio': [0.11999459795911864, 0.10535295072876356, 0.06306733539283965, 0.058158183700038314, 0.046526057712562865, 0.038480893419080384, 0.03354137467187649, 0.028734479512888017, 0.024005288708370983, 0.022244513280350244], 'cumulative_variance': [0.11999459795911864, 0.2253475486878822, 0.288414... | 1.5 | AMBER | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-2[DGalpNAca1-3]DGalpb1-3DGalpNAca1-OH | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1-3)GalNAc(a1- | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)-α-D-GalpNAc-(1→ | G99315PE | WURCS=2.0/3,4,3/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-1/a3-b1_b2-c1_b3-d1 | LFucpa1-2[DGalpNAca1-3]DGalpb1-3DGalpNAcb1-OH | Fuc(a1-2)[GalNAc(a1-3)]Gal(b1-3)GalNAc(b1- | α-D-GalpNAc-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→3)-β-D-GalpNAc-(1→ | G17480GI | WURCS=2.0/4,4,3/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3-4/a3-b1_b2-c1_b3-d1 | null | null | O-Glycan | {'GAL3-FUC5': {'2': {'phi': -72.69, 'psi': 138.17, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -70.12, 'psi': 141.75, 'strain': 0.496, 'linkage': '1-2'}, '4': {'phi': -65.71, 'psi': 135.64, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -63.91, 'psi': 139.67, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -76.... | {'GAL3-FUC5': {'2': {'phi': -72.69, 'psi': 138.17, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -70.14, 'psi': 141.82, 'strain': 0.496, 'linkage': '1-2'}, '4': {'phi': -65.63, 'psi': 135.56, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -63.9, 'psi': 139.7, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -76.11... | {'GAL3-FUC5': {'2': {'phi': -72.69, 'psi': 138.17, 'strain': 0.426, 'linkage': '1-2'}, '3': {'phi': -70.12, 'psi': 141.75, 'strain': 0.496, 'linkage': '1-2'}, '4': {'phi': -65.71, 'psi': 135.64, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -63.91, 'psi': 139.67, 'strain': 0.149, 'linkage': '1-2'}, '6': {'phi': -76.... | {'taxon_id': '10114', 'taxon_label': 'Rattus', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G15626ED'}]} | 4 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G71832QJ', 'url': 'https://www.glygen.org/glycan/G71832QJ'}, {'database': 'Subsumption', 'id': 'G99315PE', 'url': 'https://www.glygen.org/glycan/G99315PE'}], 'common_name': 'Bovine', 'glygen_name'... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 1'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G15626ED', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491879208', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491879208', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '2320', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '32804', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+32804', 'database': 'Ca... | 914.48 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(2)Hex(1)dHex(1) % 732.28004228 | freeEnd--?D-GalNAc--3b1D-Gal,p(--2a1L-Fuc,p)--3a1D-GalNAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000011', 'name': 'A antigen (type 3)', 'keywords': 'Blood group A; Blood group type 3'} | {'related_accession': 'G02151GJ', 'relationship': 'ancestor'};{'related_accession': 'G16136AD', 'relationship': 'ancestor'};{'related_accession': 'G17497PZ', 'relationship': 'ancestor'};{'related_accession': 'G65070RM', 'relationship': 'ancestor'};{'related_accession': 'G77555YU', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00256/snfg.svg | ./torsion_data/GS00256_torsion_data.txt | {'Cluster 0': {'count': 13103, '3_2_phi_mean': -78.12, '3_2_psi_mean': -129.16, '4_3_phi_mean': -74.4, '4_3_psi_mean': -120.58, '5_4_phi_mean': 74.27, '5_4_psi_mean': 78.96, '8_4_phi_mean': 72.09, '8_4_psi_mean': 130.36, '6_5_phi_mean': -76.41, '6_5_psi_mean': -47.65, '7_5_phi_mean': -83.8, '7_5_psi_mean': -76.38, '9_8... | G26405FM | GS00256 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/5,9,8/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-4-2-2/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-i1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dglc-HEX-1:5,14s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6o(2+1)7d,7:7d(2+1)8n,8... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)... | null | 1,681.62 | null | GlcNAc(b1-2);Gal(b1-4);GlcNAc(b1-6) | {'GlcNAc': 5, 'Man': 3, 'Gal': 1} | {'Hex': 4, 'HexNAc': 5} | 1 | 5 | 6 | 13.18574 | {'Cluster 0': 32.75, 'Cluster 1': 21.2, 'Cluster 2': 20.54, 'Cluster 3': 16.65, 'Cluster 4': 8.86} | {'Cluster 0': 15.0185, 'Cluster 1': 14.701, 'Cluster 2': 11.9838, 'Cluster 3': 8.0667, 'Cluster 4': 8.0017, 'Cluster 5': 6.9443, 'Cluster 6': 6.6043, 'Cluster 7': 6.1244, 'Cluster 8': 4.942, 'Cluster 9': 2.9572, 'Cluster 10': 2.4573, 'Cluster 11': 2.1398, 'Cluster 12': 1.5948, 'Cluster 13': 1.5548, 'Cluster 14': 1.1549... | {'2': 0.31895886162843723, '3': 0.3991005485840931, '4': 0.3911947084694989, '5': 0.2984133497690049, '6': 0.28929709661554887, '7': 0.2520135038692674, '8': 0.24369172768643912} | {'0': [9, 20], '1': [1, 6, 11, 12, 13, 14, 15, 17, 19, 21, 22, 23, 24], '2': [4, 5, 18], '3': [2, 3, 8, 10], '4': [0, 7, 16, 25]} | {'explained_variance_ratio': [0.1437328753752551, 0.13141250174797997, 0.08379472587534556, 0.06977409093540576, 0.045176801697695154, 0.04406463987761588, 0.027381621723517532, 0.02500704519991406, 0.018864683197932948, 0.01846399844458437], 'cumulative_variance': [0.1437328753752551, 0.27514537712323506, 0.3589401029... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G68049QL | WURCS=2.0/5,9,8/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-4-2-2/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-i1 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G01265XZ | WURCS=2.0/4,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-3-1-1/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-i1 | null | null | N-Glycan | {'MAN5-NAG7': {'2': {'phi': -84.12, 'psi': -74.29, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -75.48, 'psi': -84.02, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -77.88, 'psi': -70.45, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -67.25, 'psi': -116.46, 'strain': 1.78, 'linkage': '1-2'}, '6': {'phi': -81.5... | {'MAN5-NAG7': {'2': {'phi': -84.12, 'psi': -74.29, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -75.5, 'psi': -84.0, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -77.85, 'psi': -70.45, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -67.23, 'psi': -116.49, 'strain': 1.78, 'linkage': '1-2'}, '6': {'phi': -81.52,... | {'MAN5-NAG7': {'2': {'phi': -84.12, 'psi': -74.29, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -75.48, 'psi': -84.02, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -77.88, 'psi': -70.45, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -67.25, 'psi': -116.46, 'strain': 1.78, 'linkage': '1-2'}, '6': {'phi': -81.5... | null | 9 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G26405FM', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G26405FM', 'url': 'https://glytoucan.org/Structures/Glycans/G26405FM', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G26405FM', 'url': 'https://sandbox.glyomics.org/explore.html?G26405FM', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G26405FM', 'url': 'https://gnome.glyom... | 2,088.07 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 218 | Saccharide | HexNAc(5)Hex(4) % 1681.61872173 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p)--6b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G36490QW', 'relationship': 'ancestor'};{'related_accession': 'G72790NZ', 'relationship': 'ancestor'};{'related_accession': 'G97126PW', 'relationship': 'ancestor'};{'related_accession': 'G72790NZ', 'relationship': 'basecomposition'};{'related_accession': 'G97126PW', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00257/snfg.svg | ./torsion_data/GS00257_torsion_data.txt | {'Cluster 0': {'count': 11923, '3_2_phi_mean': -78.22, '3_2_psi_mean': -99.3, '4_3_phi_mean': -72.63, '4_3_psi_mean': -119.2, '3_2_phi_std': 17.26, '3_2_psi_std': 34.58, '4_3_phi_std': 11.72, '4_3_psi_std': 18.23}, 'Cluster 1': {'count': 8826, '3_2_phi_mean': -76.97, '3_2_psi_mean': -94.4, '4_3_phi_mean': -72.13, '4_3_... | G01758EA | GS00257 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3LFucpa1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3LFucp | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)Fuc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-L-Fuc | WURCS=2.0/4,4,3/[u1221m][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_b4-c1_c3-d2 | RES,1b:a-lgal-HEX-1:5|6:d,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:b-dgal-HEX-1:5,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-acetyl,LIN,1:1o(3+1)2d,2:2d(2+1)3n,3:2o(4+1)4d,4:4o(3+2)5d,5:5d(5+1)6n, | O1C(O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H](O)[C@@H]1C | null | 820.3 | {'motif': 'G00065MO', 'motif_label': 'Polysialic acid'} | Neu5Ac(a2-3) | {'Neu5Ac': 1, 'Gal': 1, 'GlcNAc': 1, 'Fuc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Ac': 1, 'dHex': 1} | 14 | 15 | 23 | 10.914389 | {'Cluster 0': 29.8, 'Cluster 1': 22.06, 'Cluster 2': 19.73, 'Cluster 3': 18.77, 'Cluster 4': 9.63} | {'Cluster 0': 46.1004, 'Cluster 1': 14.726, 'Cluster 2': 13.7411, 'Cluster 3': 10.2765, 'Cluster 4': 5.3645, 'Cluster 5': 2.2248, 'Cluster 6': 2.0448, 'Cluster 7': 1.8298, 'Cluster 8': 0.8699, 'Cluster 9': 0.7324, 'Cluster 10': 0.5949, 'Cluster 11': 0.5274, 'Cluster 12': 0.5249, 'Cluster 13': 0.2425, 'Cluster 14': 0.11... | {'2': 0.37520707417363414, '3': 0.3773094346998773, '4': 0.39870041324035455, '5': 0.32422095003813395, '6': 0.2861643265906193, '7': 0.27454534375256, '8': 0.2812760420887524} | {'0': [7, 9, 16], '1': [0], '2': [6, 10, 11], '3': [], '4': [1, 2, 3, 4, 5, 8, 12, 13, 14, 15]} | {'explained_variance_ratio': [0.18309058029025232, 0.11421842073962361, 0.08352379378309725, 0.0656926824523357, 0.03588356497443147, 0.030339911542913153, 0.028724777155037847, 0.027081769889192624, 0.025274659769299997, 0.01739965631851377], 'cumulative_variance': [0.18309058029025232, 0.29730900102987595, 0.38083279... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3LFucpa1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)Fuc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-α-L-Fucp-(1→ | G39294YF | WURCS=2.0/4,4,3/[a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_b4-c1_c3-d2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3LFucpb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)Fuc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-L-Fucp-(1→ | G09106ES | WURCS=2.0/4,4,3/[a1221m-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_b4-c1_c3-d2 | null | null | null | {'FUC2-NAG3': {'2': {'phi': -78.51, 'psi': 159.4, 'strain': 2.313, 'linkage': '1-3'}, '3': {'phi': -69.14, 'psi': 167.3, 'strain': 3.381, 'linkage': '1-3'}, '4': {'phi': -58.74, 'psi': 161.92, 'strain': 2.778, 'linkage': '1-3'}, '5': {'phi': -79.76, 'psi': 154.38, 'strain': 2.313, 'linkage': '1-3'}, '6': {'phi': -90.59... | {'FUC2-NAG3': {'2': {'phi': -78.51, 'psi': 159.4, 'strain': 2.313, 'linkage': '1-3'}, '3': {'phi': -69.09, 'psi': 167.27, 'strain': 3.381, 'linkage': '1-3'}, '4': {'phi': -58.77, 'psi': 161.96, 'strain': 2.778, 'linkage': '1-3'}, '5': {'phi': -79.8, 'psi': 154.38, 'strain': 2.313, 'linkage': '1-3'}, '6': {'phi': -90.54... | {'FUC2-NAG3': {'2': {'phi': -78.51, 'psi': 159.4, 'strain': 2.313, 'linkage': '1-3'}, '3': {'phi': -69.14, 'psi': 167.3, 'strain': 3.381, 'linkage': '1-3'}, '4': {'phi': -58.74, 'psi': 161.92, 'strain': 2.778, 'linkage': '1-3'}, '5': {'phi': -79.76, 'psi': 154.38, 'strain': 2.313, 'linkage': '1-3'}, '6': {'phi': -90.59... | null | 4 | {'taxid': 7227, 'name': 'Drosophila melanogaster', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G39294YF', 'url': 'https://www.glygen.org/glycan/G39294YF'}], 'common_name': 'Fruit fly', 'glygen_name': 'Fruit fly', 'reference_species': 'Drosophila melanogaster [7227]'};{'taxid': ... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'O-fucose core'}} | {'uniprot_canonical_ac': 'Q8VHI3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G01758EA', 'protein_name': 'GDP-fucose protein O-fucosyltransferase 2', 'gene': 'Pofut2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8VHI3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id'... | {'id': '491929388', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491929388', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G01758EA', 'url': 'https://glytoucan.org/Structures/Glycans/G01758EA', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G01758EA', 'url': 'https://sandbox.... | 1,030.53 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(1)Hex(1)dHex(1)NeuAc(1) % 820.29608631 | freeEnd--?L-Fuc--3b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G11499FP', 'relationship': 'ancestor'};{'related_accession': 'G15602PX', 'relationship': 'ancestor'};{'related_accession': 'G16340GB', 'relationship': 'ancestor'};{'related_accession': 'G42932DS', 'relationship': 'ancestor'};{'related_accession': 'G48998UF', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00258/snfg.svg | ./torsion_data/GS00258_torsion_data.txt | {'Cluster 0': {'count': 14819, '3_2_phi_mean': -76.81, '3_2_psi_mean': -81.33, '4_3_phi_mean': -72.02, '4_3_psi_mean': -122.09, '3_2_phi_std': 15.59, '3_2_psi_std': 17.7, '4_3_phi_std': 11.01, '4_3_psi_std': 16.67}, 'Cluster 1': {'count': 7225, '3_2_phi_mean': -82.56, '3_2_psi_mean': -135.14, '4_3_phi_mean': -71.05, '4... | G54574KG | GS00258 | DGalpb1-4DGlcpNAcb1-3LFucpa1-OH | DGalpb1-4DGlcpNAcb1-3LFucp | Gal(b1-4)GlcNAc(b1-3)Fuc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-L-Fuc | WURCS=2.0/3,3,2/[u1221m][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3/a3-b1_b4-c1 | RES,1b:a-lgal-HEX-1:5|6:d,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:b-dgal-HEX-1:5,LIN,1:1o(3+1)2d,2:2d(2+1)3n,3:2o(4+1)4d, | O1C(O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H](O)[C@@H]1C | null | 529.2 | {'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Gal(b1-4) | {'Gal': 1, 'GlcNAc': 1, 'Fuc': 1} | {'Hex': 1, 'HexNAc': 1, 'dHex': 1} | 7 | 10 | 15 | 10.176708 | {'Cluster 0': 49.39, 'Cluster 1': 24.08, 'Cluster 2': 14.26, 'Cluster 3': 9.54, 'Cluster 4': 2.73} | {'Cluster 0': 68.9698, 'Cluster 1': 10.359, 'Cluster 2': 7.9525, 'Cluster 3': 5.4661, 'Cluster 4': 2.7397, 'Cluster 5': 2.1431, 'Cluster 6': 1.0166, 'Cluster 7': 0.5, 'Cluster 8': 0.3433, 'Cluster 9': 0.2266, 'Cluster 10': 0.1167, 'Cluster 11': 0.0733, 'Cluster 12': 0.0667, 'Cluster 13': 0.0267} | {'2': 0.3125239159206586, '3': 0.3282886716986592, '4': 0.31645901958257283, '5': 0.24998101522076435, '6': 0.21465282583705017, '7': 0.21812249539811968, '8': 0.17242016909048152} | {'0': [3, 6], '1': [1, 2, 5, 9, 13], '2': [8], '3': [0, 7, 10, 12], '4': [4, 11]} | {'explained_variance_ratio': [0.15107689511370154, 0.09378379772209201, 0.08414236561970308, 0.07039383224806053, 0.048350276918483016, 0.03936292857630897, 0.031976194531795, 0.026612738058828796, 0.022700025306559863, 0.019257633892813736], 'cumulative_variance': [0.15107689511370154, 0.24486069283579354, 0.329003058... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-3LFucpa1-OH | Gal(b1-4)GlcNAc(b1-3)Fuc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-α-L-Fucp-(1→ | G60605ZN | WURCS=2.0/3,3,2/[a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3/a3-b1_b4-c1 | DGalpb1-4DGlcpNAcb1-3LFucpb1-OH | Gal(b1-4)GlcNAc(b1-3)Fuc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-L-Fucp-(1→ | G10016UC | WURCS=2.0/3,3,2/[a1221m-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3/a3-b1_b4-c1 | null | null | null | {'FUC2-NAG3': {'2': {'phi': -74.61, 'psi': 151.03, 'strain': 2.313, 'linkage': '1-3'}, '3': {'phi': -71.14, 'psi': 105.9, 'strain': 1.966, 'linkage': '1-3'}, '4': {'phi': -70.51, 'psi': 156.12, 'strain': 2.313, 'linkage': '1-3'}, '5': {'phi': -76.81, 'psi': 107.67, 'strain': 1.966, 'linkage': '1-3'}, '6': {'phi': 71.92... | {'FUC2-NAG3': {'2': {'phi': -74.61, 'psi': 151.03, 'strain': 2.313, 'linkage': '1-3'}, '3': {'phi': -71.1, 'psi': 105.9, 'strain': 1.966, 'linkage': '1-3'}, '4': {'phi': -70.48, 'psi': 156.1, 'strain': 2.313, 'linkage': '1-3'}, '5': {'phi': -76.83, 'psi': 107.69, 'strain': 1.966, 'linkage': '1-3'}, '6': {'phi': 71.96, ... | {'FUC2-NAG3': {'2': {'phi': -74.61, 'psi': 151.03, 'strain': 2.313, 'linkage': '1-3'}, '3': {'phi': -71.14, 'psi': 105.9, 'strain': 1.966, 'linkage': '1-3'}, '4': {'phi': -70.51, 'psi': 156.12, 'strain': 2.313, 'linkage': '1-3'}, '5': {'phi': -76.81, 'psi': 107.67, 'strain': 1.966, 'linkage': '1-3'}, '6': {'phi': 71.92... | null | 3 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G60605ZN', 'url': 'https://www.glygen.org/glycan/G60605ZN'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'O-fucose core'}} | {'uniprot_canonical_ac': 'Q8VHI3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G54574KG', 'protein_name': 'GDP-fucose protein O-fucosyltransferase 2', 'gene': 'Pofut2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8VHI3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id'... | {'id': '491855667', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491855667', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G54574KG', 'url': 'https://glytoucan.org/Structures/Glycans/G54574KG', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G54574KG', 'url': 'https://sandbox.... | 669.36 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(1)Hex(1)dHex(1) % 529.200669675 | freeEnd--?L-Fuc--3b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G02497EU', 'relationship': 'ancestor'};{'related_accession': 'G34611YE', 'relationship': 'ancestor'};{'related_accession': 'G54129SE', 'relationship': 'ancestor'};{'related_accession': 'G69658MM', 'relationship': 'ancestor'};{'related_accession': 'G54129SE', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00259/snfg.svg | ./torsion_data/GS00259_torsion_data.txt | {'Cluster 0': {'count': 8159, '3_2_phi_mean': -76.56, '3_2_psi_mean': 119.56, '3_2_phi_std': 15.51, '3_2_psi_std': 17.4}, 'Cluster 1': {'count': 6893, '3_2_phi_mean': -72.98, '3_2_psi_mean': 98.06, '3_2_phi_std': 34.19, '3_2_psi_std': 65.67}, 'Cluster 2': {'count': 6854, '3_2_phi_mean': -74.45, '3_2_psi_mean': 118.07, ... | G40764VP | GS00259 | DNeup5Aca2-3DGalpb1-4DGlcpa1-OH | DNeup5Aca2-3DGalpb1-4DGlcp | Neu5Ac(a2-3)Gal(b1-4)Glc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/3,3,2/[u2122h][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b3-c2 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,4s:n-acetyl,LIN,1:1o(4+1)2d,2:2o(3+2)3d,3:3d(5+1)4n, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@H]1CO | null | 633.21 | {'motif': 'G30207PZ', 'motif_label': 'GM4'} | Neu5Ac(a2-3) | {'Neu5Ac': 1, 'Gal': 1, 'Glc': 1} | {'Hex': 2, 'Neu5Ac': 1} | 11 | 13 | 19 | 9.458092 | {'Cluster 0': 27.19, 'Cluster 1': 22.97, 'Cluster 2': 22.84, 'Cluster 3': 19.71, 'Cluster 4': 7.28} | {'Cluster 0': 28.2505, 'Cluster 1': 23.8709, 'Cluster 2': 15.4285, 'Cluster 3': 14.9985, 'Cluster 4': 5.2695, 'Cluster 5': 3.9829, 'Cluster 6': 3.7763, 'Cluster 7': 2.3731, 'Cluster 8': 0.9566, 'Cluster 9': 0.7199, 'Cluster 10': 0.3366, 'Cluster 11': 0.0367} | {'2': 0.39141143837229925, '3': 0.37644833941422945, '4': 0.41120527572803667, '5': 0.4192339960312423, '6': 0.46615669239942703, '7': 0.4896600099370581, '8': 0.4162475692174051} | {'0': [8], '1': [0], '2': [2], '3': [1, 3, 4, 7, 9], '4': [5, 6, 10, 11]} | {'explained_variance_ratio': [0.18070722761355867, 0.11510969963781725, 0.10174962520666607, 0.0420546571145457, 0.03997102159762892, 0.03833289406202235, 0.036095093386691, 0.027945815706051137, 0.021840727595753232, 0.020256048998418263], 'cumulative_variance': [0.18070722761355867, 0.2958169272513759, 0.397566552458... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4DGlcpa1-OH | Neu5Ac(a2-3)Gal(b1-4)Glc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G92323ZH | WURCS=2.0/3,3,2/[a2122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b3-c2 | DNeup5Aca2-3DGalpb1-4DGlcpb1-OH | Neu5Ac(a2-3)Gal(b1-4)Glc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G91237TK | WURCS=2.0/3,3,2/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b3-c2 | GM3 | null | null | {'GLC2-GAL3': {'2': {'phi': -78.23, 'psi': 124.11, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -68.02, 'psi': 134.89, 'strain': 0.267, 'linkage': '1-4'}, '4': {'phi': -95.37, 'psi': 92.83, 'strain': 1.219, 'linkage': '1-4'}, '5': {'phi': -66.38, 'psi': 122.4, 'strain': 0.031, 'linkage': '1-4'}, '6': {'phi': -53.54... | {'GLC2-GAL3': {'2': {'phi': -78.23, 'psi': 124.11, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -68.06, 'psi': 134.92, 'strain': 0.267, 'linkage': '1-4'}, '4': {'phi': -95.4, 'psi': 92.79, 'strain': 1.219, 'linkage': '1-4'}, '5': {'phi': -66.38, 'psi': 122.4, 'strain': 0.031, 'linkage': '1-4'}, '6': {'phi': -53.59,... | {'GLC2-GAL3': {'2': {'phi': -78.23, 'psi': 124.11, 'strain': 0.008, 'linkage': '1-4'}, '3': {'phi': -68.02, 'psi': 134.89, 'strain': 0.267, 'linkage': '1-4'}, '4': {'phi': -95.37, 'psi': 92.83, 'strain': 1.219, 'linkage': '1-4'}, '5': {'phi': -66.38, 'psi': 122.4, 'strain': 0.031, 'linkage': '1-4'}, '6': {'phi': -53.54... | {'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G40764VP'}]};{'taxon_id': '9031', 'taxon_label': 'Gallus gallus (chicken)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/... | 3 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G40764VP', 'url': 'https://glycosmos.org/glycans/show/G40764VP'}, {'database': 'Subsumption', 'id': 'G91237TK', 'url': 'https://www.glygen.org/glycan/G91237TK'}], 'common_name': 'Bovine', 'glygen_name': 'B... | {'type': {'name': 'Human Milk Oligosaccharide'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G40764VP', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G40764... | {'id': '491851273', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491851273', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '223', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10979', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+10979', 'database': 'Car... | 815.42 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | Hex(2)NeuAc(1) % 633.211628335 | freeEnd--?D-Glc--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000090', 'name': 'GM3', 'keywords': 'Glycolipid'} | {'related_accession': 'G02123VE', 'relationship': 'ancestor'};{'related_accession': 'G04256AW', 'relationship': 'ancestor'};{'related_accession': 'G15736PY', 'relationship': 'ancestor'};{'related_accession': 'G35498QW', 'relationship': 'ancestor'};{'related_accession': 'G44859EL', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00260/snfg.svg | ./torsion_data/GS00260_torsion_data.txt | {'Cluster 0': {'count': 13017, '3_2_phi_mean': -78.39, '3_2_psi_mean': 106.85, '4_3_phi_mean': -66.48, '4_3_psi_mean': -108.37, '8_3_phi_mean': -69.36, '8_3_psi_mean': 140.96, '5_4_phi_mean': -80.24, '5_4_psi_mean': 142.89, '6_5_phi_mean': -68.37, '6_5_psi_mean': -108.35, '7_5_phi_mean': -69.58, '7_5_psi_mean': 142.23,... | G05095BA | GS00260 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4DGlcpa1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4DGlcp | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-4)Glc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→4)-D-Glc | WURCS=2.0/4,7,6/[u2122h][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-3-4/a4-b1_b3-c1_b4-d1_d3-e1_e3-f1_e4-g1 | RES,1b:b-dglc-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:a-lgal-HEX-1:5|6:d,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:a-lgal-HEX-1:5|6:d,9b:b-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2d(2+1)3n,3:2o(3+1)4d,4:2o(4+1)5d,5:5o(3+1)6d,6:6d(2+1)7n,7:6o(3+1)8d,8:6o(4+1)9d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O)[C@H](O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H]4NC(C)=O)[C@H]3O)[C@H](O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H]2NC(C)=O)[C@H]1CO | null | 1,202.44 | {'motif': 'G79535HZ', 'motif_label': 'Lex-Lex'} | Fuc(a1-3);Gal(b1-4) | {'Fuc': 2, 'Gal': 2, 'GlcNAc': 2, 'Glc': 1} | {'Hex': 3, 'HexNAc': 2, 'dHex': 2} | 19 | 21 | 34 | 11.262431 | {'Cluster 0': 43.39, 'Cluster 1': 30.73, 'Cluster 2': 18.06, 'Cluster 3': 5.28, 'Cluster 4': 2.54} | {'Cluster 0': 55.2078, 'Cluster 1': 33.4033, 'Cluster 2': 3.713, 'Cluster 3': 1.8798, 'Cluster 4': 1.2099, 'Cluster 5': 0.9966, 'Cluster 6': 0.8532, 'Cluster 7': 0.7233, 'Cluster 8': 0.5799, 'Cluster 9': 0.45, 'Cluster 10': 0.2933, 'Cluster 11': 0.24, 'Cluster 12': 0.1533, 'Cluster 13': 0.1033, 'Cluster 14': 0.0833, 'C... | {'2': 0.6040152965361918, '3': 0.44463368920869006, '4': 0.4535812588825211, '5': 0.3350609278661064, '6': 0.291113065294858, '7': 0.2867147460125797, '8': 0.268577928058138} | {'0': [9], '1': [1, 5, 7, 13, 15, 17], '2': [0, 14], '3': [2, 3, 4, 6, 10, 12, 16], '4': [8, 11]} | {'explained_variance_ratio': [0.17096734734528055, 0.14421459933833403, 0.06989860188289784, 0.051239801533248364, 0.035254714803036755, 0.03077175587486723, 0.029003880348669374, 0.025719930217417288, 0.018907065706073464, 0.018050359165823735], 'cumulative_variance': [0.17096734734528055, 0.31518194668361454, 0.38508... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4DGlcpa1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-4)Glc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→4)-α-D-Glcp-(1→ | G25095CM | WURCS=2.0/4,7,6/[a2122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-3-4/a4-b1_b3-c1_b4-d1_d3-e1_e3-f1_e4-g1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4DGlcpb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-4)Glc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→4)-β-D-Glcp-(1→ | G91789JU | WURCS=2.0/4,7,6/[a2122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-3-4/a4-b1_b3-c1_b4-d1_d3-e1_e3-f1_e4-g1 | null | null | null | {'NAG3-FUC8': {'2': {'phi': -65.98, 'psi': -93.41, 'strain': 0.094, 'linkage': '1-3'}, '3': {'phi': -62.58, 'psi': -95.17, 'strain': 0.094, 'linkage': '1-3'}, '4': {'phi': -60.84, 'psi': -98.84, 'strain': 0.094, 'linkage': '1-3'}, '5': {'phi': -65.1, 'psi': -96.7, 'strain': 0.094, 'linkage': '1-3'}, '6': {'phi': -57.4,... | {'NAG3-FUC8': {'2': {'phi': -65.98, 'psi': -93.41, 'strain': 0.094, 'linkage': '1-3'}, '3': {'phi': -62.5, 'psi': -95.23, 'strain': 0.094, 'linkage': '1-3'}, '4': {'phi': -60.93, 'psi': -98.79, 'strain': 0.094, 'linkage': '1-3'}, '5': {'phi': -65.11, 'psi': -96.74, 'strain': 0.094, 'linkage': '1-3'}, '6': {'phi': -57.4... | {'NAG3-FUC8': {'2': {'phi': -65.98, 'psi': -93.41, 'strain': 0.094, 'linkage': '1-3'}, '3': {'phi': -62.58, 'psi': -95.17, 'strain': 0.094, 'linkage': '1-3'}, '4': {'phi': -60.84, 'psi': -98.84, 'strain': 0.094, 'linkage': '1-3'}, '5': {'phi': -65.1, 'psi': -96.7, 'strain': 0.094, 'linkage': '1-3'}, '6': {'phi': -57.4,... | null | 7 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G06616KY', 'url': 'https://www.glygen.org/glycan/G06616KY'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G05095BA', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G05095... | {'id': '491930961', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491930961', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G05095BA', 'url': 'https://glytoucan.org/Structures/Glycans/G05095BA', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G05095BA', 'url': 'https://sandbox.... | 1,496.77 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 281 | Saccharide | HexNAc(2)Hex(3)dHex(2) % 1202.44359815 | freeEnd--?D-Glc--4b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis... | {'related_accession': 'G21726WW', 'relationship': 'ancestor'};{'related_accession': 'G46910OC', 'relationship': 'ancestor'};{'related_accession': 'G52380FC', 'relationship': 'ancestor'};{'related_accession': 'G79743GA', 'relationship': 'ancestor'};{'related_accession': 'G21726WW', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00261/snfg.svg | ./torsion_data/GS00261_torsion_data.txt | {'Cluster 0': {'count': 23548, '3_2_phi_mean': -76.48, '3_2_psi_mean': 47.84, '4_2_phi_mean': -77.8, '4_2_psi_mean': 101.38, '5_4_phi_mean': -79.69, '5_4_psi_mean': -123.44, '6_5_phi_mean': 76.78, '6_5_psi_mean': 90.13, '9_5_phi_mean': 71.29, '9_5_psi_mean': 123.6, '7_6_phi_mean': -85.53, '7_6_psi_mean': -79.98, '8_7_p... | G45598BE | GS00261 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-7/a4-b1_a6-k1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C... | FA2G2S1 | 2,077.75 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Gal(b1-4);Neu5Ac(a2-6);Fuc(a1-6) | {'GlcNAc': 4, 'Man': 3, 'Gal': 2, 'Neu5Ac': 1, 'Fuc': 1} | {'Hex': 5, 'HexNAc': 4, 'Neu5Ac': 1, 'dHex': 1} | 38 | 36 | 58 | 13.720547 | {'Cluster 0': 29.43, 'Cluster 1': 23.32, 'Cluster 2': 18.99, 'Cluster 3': 18.55, 'Cluster 4': 9.7} | {'Cluster 0': 12.2788, 'Cluster 1': 11.0239, 'Cluster 2': 9.7078, 'Cluster 3': 9.5978, 'Cluster 4': 7.9467, 'Cluster 5': 7.8492, 'Cluster 6': 6.5918, 'Cluster 7': 3.9246, 'Cluster 8': 3.3522, 'Cluster 9': 3.0272, 'Cluster 10': 2.9272, 'Cluster 11': 2.4573, 'Cluster 12': 2.2173, 'Cluster 13': 2.0248, 'Cluster 14': 2.012... | {'2': 0.39656228987681574, '3': 0.41010875993031876, '4': 0.4041343681930907, '5': 0.27401551090561177, '6': 0.3184569734052709, '7': 0.33156257628020736, '8': 0.3060203192636792} | {'0': [1, 2, 6, 8, 10, 18, 19, 23, 25], '1': [9, 13, 27, 28], '2': [0, 4, 5, 11, 12, 14, 17, 20, 21, 26], '3': [7, 15, 16, 22], '4': [3, 24]} | {'explained_variance_ratio': [0.19416636666046566, 0.10280990132051841, 0.07201818470719766, 0.06038418769396675, 0.04687783648247037, 0.04052139055982787, 0.032754151518174804, 0.02927208540544798, 0.021586562269607253, 0.021457301702946633], 'cumulative_variance': [0.19416636666046566, 0.2969762679809841, 0.368994452... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G78174XA | WURCS=2.0/7,11,10/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-7/a4-b1_a6-k1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G11041DA | WURCS=2.0/6,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4-6/a4-b1_a6-k1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1 | FA2G2S1 | null | Biantennary N-Glycan;Complex N-Glycan;Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG7': {'2': {'phi': -75.59, 'psi': -81.69, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -93.04, 'psi': -78.32, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -102.58, 'psi': -69.0, 'strain': 1.173, 'linkage': '1-2'}, '5': {'phi': -67.85, 'psi': -98.46, 'strain': 1.237, 'linkage': '1-2'}, '6': {'phi': -64.... | {'MAN6-NAG7': {'2': {'phi': -75.59, 'psi': -81.69, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -93.05, 'psi': -78.34, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -102.51, 'psi': -69.02, 'strain': 1.173, 'linkage': '1-2'}, '5': {'phi': -67.79, 'psi': -98.46, 'strain': 1.237, 'linkage': '1-2'}, '6': {'phi': -64... | {'MAN6-NAG7': {'2': {'phi': -75.59, 'psi': -81.69, 'strain': 0.234, 'linkage': '1-2'}, '3': {'phi': -93.04, 'psi': -78.32, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -102.58, 'psi': -69.0, 'strain': 1.173, 'linkage': '1-2'}, '5': {'phi': -67.85, 'psi': -98.46, 'strain': 1.237, 'linkage': '1-2'}, '6': {'phi': -64.... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G45598BE'}]};{'taxon_id': '9823', 'taxon_label': 'Sus scrofa (pig)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G45598BE'}]} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00262/snfg.svg | ./torsion_data/GS00262_torsion_data.txt | {'Cluster 0': {'count': 10784, '3_2_phi_mean': -74.64, '3_2_psi_mean': 114.16, '4_3_phi_mean': -83.25, '4_3_psi_mean': 86.22, '5_4_phi_mean': -73.31, '5_4_psi_mean': -120.43, '6_5_phi_mean': -78.79, '6_5_psi_mean': 92.99, '7_6_phi_mean': -74.1, '7_6_psi_mean': 120.76, '3_2_phi_std': 14.67, '3_2_psi_std': 28.26, '4_3_ph... | G54679PS | GS00262 | DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcp | Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/3,6,5/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2/a4-b1_b3-c1_c4-d1_d3-e1_e3-f1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:b-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6d(2+1)7n,7:6o(3+1)8d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H]5NC(C)=O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO | null | 1,072.38 | {'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00056MO', 'motif_label': 'Type 1 LN'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'} | Gal(b1-3) | {'Gal': 3, 'GlcNAc': 2, 'Glc': 1} | {'Hex': 4, 'HexNAc': 2} | 18 | 20 | 31 | 11.594551 | {'Cluster 0': 35.94, 'Cluster 1': 35.19, 'Cluster 2': 20.05, 'Cluster 3': 6.24, 'Cluster 4': 2.58} | {'Cluster 0': 33.5233, 'Cluster 1': 28.2138, 'Cluster 2': 13.4787, 'Cluster 3': 13.442, 'Cluster 4': 4.5329, 'Cluster 5': 1.3365, 'Cluster 6': 1.1632, 'Cluster 7': 0.7799, 'Cluster 8': 0.7633, 'Cluster 9': 0.5233, 'Cluster 10': 0.4133, 'Cluster 11': 0.32, 'Cluster 12': 0.3066, 'Cluster 13': 0.29, 'Cluster 14': 0.23, 'C... | {'2': 0.5217988508176103, '3': 0.44206727450779915, '4': 0.3313925257289185, '5': 0.31315004765103377, '6': 0.31806985488006995, '7': 0.3218344937427959, '8': 0.27324806996970563} | {'0': [10, 14], '1': [0], '2': [1, 4, 7, 11, 16, 18], '3': [6, 17], '4': [2, 3, 5, 8, 9, 12, 13, 15]} | {'explained_variance_ratio': [0.2010496143841027, 0.1101742916534818, 0.05934084668105016, 0.05479419142066204, 0.04806697076639346, 0.03952187227472504, 0.030271454412174385, 0.028503615675234916, 0.023696400798913962, 0.02223190571494823], 'cumulative_variance': [0.2010496143841027, 0.31122390603758454, 0.37056475271... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(a1- | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G28185IZ | WURCS=2.0/3,6,5/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2/a4-b1_b3-c1_c4-d1_d3-e1_e3-f1 | DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpb1-OH | Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1- | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G86143FV | WURCS=2.0/3,6,5/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2/a4-b1_b3-c1_c4-d1_d3-e1_e3-f1 | null | null | null | {'GAL3-NAG4': {'2': {'phi': -84.98, 'psi': -154.63, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -82.1, 'psi': -98.09, 'strain': 0.661, 'linkage': '1-3'}, '4': {'phi': -84.92, 'psi': -140.74, 'strain': 0.737, 'linkage': '1-3'}, '5': {'phi': -67.38, 'psi': -98.33, 'strain': 0.094, 'linkage': '1-3'}, '6': {'phi': -91... | {'GAL3-NAG4': {'2': {'phi': -84.98, 'psi': -154.63, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -82.16, 'psi': -98.11, 'strain': 0.661, 'linkage': '1-3'}, '4': {'phi': -84.92, 'psi': -140.74, 'strain': 0.737, 'linkage': '1-3'}, '5': {'phi': -67.36, 'psi': -98.32, 'strain': 0.094, 'linkage': '1-3'}, '6': {'phi': -9... | {'GAL3-NAG4': {'2': {'phi': -84.98, 'psi': -154.63, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -82.1, 'psi': -98.09, 'strain': 0.661, 'linkage': '1-3'}, '4': {'phi': -84.92, 'psi': -140.74, 'strain': 0.737, 'linkage': '1-3'}, '5': {'phi': -67.38, 'psi': -98.33, 'strain': 0.094, 'linkage': '1-3'}, '6': {'phi': -91... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G54679PS'}]} | 6 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G54679PS', 'url': 'https://glycosmos.org/glycans/show/G54679PS'}, {'database': 'Subsumption', 'id': 'G86143FV', 'url': 'https://www.glygen.org/glycan/G86143FV'}], 'common_name': 'Human', 'glygen_name': '... | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Neo-lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G54679PS', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G54679... | {'id': '491855702', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491855702', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '4453', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '11425', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+11425', 'database': 'Ca... | 1,352.69 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 328 | Saccharide | HexNAc(2)Hex(4) % 1072.38060391 | freeEnd--?D-Glc--4b1D-Gal,p--3b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcNAc,p--3b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'} | {'related_accession': 'G12530CV', 'relationship': 'ancestor'};{'related_accession': 'G63998IX', 'relationship': 'ancestor'};{'related_accession': 'G92050GC', 'relationship': 'ancestor'};{'related_accession': 'G92050GC', 'relationship': 'basecomposition'};{'related_accession': 'G12530CV', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00263/snfg.svg | ./torsion_data/GS00263_torsion_data.txt | {'Cluster 0': {'count': 15080, '3_2_phi_mean': -75.07, '3_2_psi_mean': 116.6, '4_3_phi_mean': -77.97, '4_3_psi_mean': 99.91, '5_4_phi_mean': -71.82, '5_4_psi_mean': 121.58, '6_5_phi_mean': -77.46, '6_5_psi_mean': 100.7, '7_6_phi_mean': -73.72, '7_6_psi_mean': 119.96, '3_2_phi_std': 13.63, '3_2_psi_std': 20.97, '4_3_phi... | G35369ST | GS00263 | DGalpb1-3DGlcpNAcb1-3DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | DGalpb1-3DGlcpNAcb1-3DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcp | Gal(b1-3)GlcNAc(b1-3)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/3,6,5/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2/a4-b1_b3-c1_c3-d1_d3-e1_e3-f1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:b-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:5o(3+1)6d,6:6d(2+1)7n,7:6o(3+1)8d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H]5NC(C)=O)[C@H]4O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO | null | 1,072.38 | {'motif': 'G43784HS', 'motif_label': 'Type 1 LN2'} | Gal(b1-3) | {'Gal': 3, 'GlcNAc': 2, 'Glc': 1} | {'Hex': 4, 'HexNAc': 2} | 18 | 20 | 31 | 10.678465 | {'Cluster 0': 50.26, 'Cluster 1': 22.06, 'Cluster 2': 17.42, 'Cluster 3': 5.77, 'Cluster 4': 4.49} | {'Cluster 0': 58.8474, 'Cluster 1': 25.1542, 'Cluster 2': 4.8262, 'Cluster 3': 2.6531, 'Cluster 4': 1.7432, 'Cluster 5': 1.2132, 'Cluster 6': 1.1865, 'Cluster 7': 1.1532, 'Cluster 8': 0.9466, 'Cluster 9': 0.7033, 'Cluster 10': 0.6499, 'Cluster 11': 0.3633, 'Cluster 12': 0.2666, 'Cluster 13': 0.18, 'Cluster 14': 0.0633,... | {'2': 0.7427597366110212, '3': 0.6207510760885262, '4': 0.302964809025526, '5': 0.28924087227366546, '6': 0.2879399573106584, '7': 0.2864219217994221, '8': 0.2594342175715984} | {'0': [4, 11, 15], '1': [2, 5, 6, 8], '2': [], '3': [1, 3, 7, 9, 12, 13, 14], '4': [0, 10]} | {'explained_variance_ratio': [0.25602774307738163, 0.09757178310597091, 0.06156638010282407, 0.059669243669324634, 0.046799732580885725, 0.034910753233459345, 0.023967924653113194, 0.023112449677742848, 0.021598501014832783, 0.01998334491586876], 'cumulative_variance': [0.25602774307738163, 0.35359952618335255, 0.41516... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-3DGlcpNAcb1-3DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | Gal(b1-3)GlcNAc(b1-3)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(a1- | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G60583LN | WURCS=2.0/3,6,5/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2/a4-b1_b3-c1_c3-d1_d3-e1_e3-f1 | DGalpb1-3DGlcpNAcb1-3DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-OH | Gal(b1-3)GlcNAc(b1-3)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1- | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G95014LS | WURCS=2.0/3,6,5/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2/a4-b1_b3-c1_c3-d1_d3-e1_e3-f1 | null | null | null | {'GAL3-NAG4': {'2': {'phi': -76.56, 'psi': -148.91, 'strain': 0.582, 'linkage': '1-3'}, '3': {'phi': -80.44, 'psi': 178.0, 'strain': 2.485, 'linkage': '1-3'}, '4': {'phi': -81.34, 'psi': -97.72, 'strain': 0.661, 'linkage': '1-3'}, '5': {'phi': -61.59, 'psi': -135.55, 'strain': 0.758, 'linkage': '1-3'}, '6': {'phi': -64... | {'GAL3-NAG4': {'2': {'phi': -76.56, 'psi': -148.91, 'strain': 0.582, 'linkage': '1-3'}, '3': {'phi': -80.51, 'psi': 178.02, 'strain': 2.485, 'linkage': '1-3'}, '4': {'phi': -81.35, 'psi': -97.73, 'strain': 0.661, 'linkage': '1-3'}, '5': {'phi': -61.55, 'psi': -135.54, 'strain': 0.758, 'linkage': '1-3'}, '6': {'phi': -6... | {'GAL3-NAG4': {'2': {'phi': -76.56, 'psi': -148.91, 'strain': 0.582, 'linkage': '1-3'}, '3': {'phi': -80.44, 'psi': 178.0, 'strain': 2.485, 'linkage': '1-3'}, '4': {'phi': -81.34, 'psi': -97.72, 'strain': 0.661, 'linkage': '1-3'}, '5': {'phi': -61.59, 'psi': -135.55, 'strain': 0.758, 'linkage': '1-3'}, '6': {'phi': -64... | null | 6 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G95014LS', 'url': 'https://www.glygen.org/glycan/G95014LS'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G35369ST', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G35369... | {'id': '491944355', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491944355', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G35369ST', 'url': 'https://glytoucan.org/Structures/Glycans/G35369ST', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G35369ST', 'url': 'https://sandbox.... | 1,352.69 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 328 | Saccharide | HexNAc(2)Hex(4) % 1072.38060391 | freeEnd--?D-Glc--4b1D-Gal,p--3b1D-GlcNAc,p--3b1D-Gal,p--3b1D-GlcNAc,p--3b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000006', 'name': 'Type 1 LN2', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'} | {'related_accession': 'G12530CV', 'relationship': 'ancestor'};{'related_accession': 'G63998IX', 'relationship': 'ancestor'};{'related_accession': 'G92050GC', 'relationship': 'ancestor'};{'related_accession': 'G92050GC', 'relationship': 'basecomposition'};{'related_accession': 'G12530CV', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00264/snfg.svg | ./torsion_data/GS00264_torsion_data.txt | {'Cluster 0': {'count': 11431, '3_2_phi_mean': -77.92, '3_2_psi_mean': -129.3, '4_3_phi_mean': -78.55, '4_3_psi_mean': -116.16, '5_4_phi_mean': 71.52, '5_4_psi_mean': -44.41, '8_4_phi_mean': 72.1, '8_4_psi_mean': 128.15, '6_5_phi_mean': 71.76, '6_5_psi_mean': -69.98, '7_5_phi_mean': 72.15, '7_5_psi_mean': -111.25, '9_8... | G66034LU | GS00264 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-6-4-4-4/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_h4-i1_j3-k1_j6-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:a-dman-HEX-1:5,15b:a-dman-HEX-1:5,16b:a-dman-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H](O)[C@H](O[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H]4O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]... | null | 2,110.76 | {'motif': 'G00028MO', 'motif_label': 'N-Glycan high mannose'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Man(a1-3);Man(a1-6);Gal(b1-4) | {'Man': 5, 'GlcNAc': 4, 'Gal': 2, 'Fuc': 1} | {'Hex': 7, 'HexNAc': 4, 'dHex': 1} | 37 | 37 | 60 | 14.075653 | {'Cluster 0': 28.57, 'Cluster 1': 27.27, 'Cluster 2': 22.6, 'Cluster 3': 12.26, 'Cluster 4': 9.3} | {'Cluster 0': 20.1755, 'Cluster 1': 15.0335, 'Cluster 2': 10.7789, 'Cluster 3': 8.6066, 'Cluster 4': 7.3693, 'Cluster 5': 7.0318, 'Cluster 6': 5.7744, 'Cluster 7': 5.3195, 'Cluster 8': 2.9097, 'Cluster 9': 1.7423, 'Cluster 10': 1.5948, 'Cluster 11': 1.5298, 'Cluster 12': 1.4449, 'Cluster 13': 1.4299, 'Cluster 14': 1.38... | {'2': 0.3143295029848077, '3': 0.3277978374838182, '4': 0.30882951556516686, '5': 0.30721427630733494, '6': 0.2752083639711166, '7': 0.27457297263489333, '8': 0.2520054971193024} | {'0': [6, 12, 26, 29], '1': [2, 3, 8, 13, 18, 20, 21, 23], '2': [0, 30], '3': [4, 7, 9, 14, 19, 22, 25, 28], '4': [1, 5, 10, 11, 15, 16, 17, 24, 27]} | {'explained_variance_ratio': [0.11962425578138695, 0.09872137590944904, 0.08377677658515087, 0.0710471145163917, 0.05492444191440666, 0.046226297039406644, 0.035562674723553366, 0.03450851353971867, 0.02595667935962205, 0.024156273744534065], 'cumulative_variance': [0.11962425578138695, 0.21834563169083598, 0.302122408... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G55963XZ | WURCS=2.0/6,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-6-4-4-4/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_h4-i1_j3-k1_j6-l1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[α-D-Manp-(1→3)[α-D-Manp-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G92198BU | WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-1-5-3-3-3/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_h4-i1_j3-k1_j6-l1 | null | null | N-Glycan | {'MAN8-NAG11': {'2': {'phi': -86.35, 'psi': -77.86, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -69.38, 'psi': -79.23, 'strain': 0.558, 'linkage': '1-2'}, '4': {'phi': -76.46, 'psi': -77.24, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -66.16, 'psi': -93.25, 'strain': 1.237, 'linkage': '1-2'}, '6': {'phi': -72.... | {'MAN8-NAG11': {'2': {'phi': -86.35, 'psi': -77.86, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -69.35, 'psi': -79.24, 'strain': 0.558, 'linkage': '1-2'}, '4': {'phi': -76.53, 'psi': -77.23, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -66.14, 'psi': -93.24, 'strain': 1.237, 'linkage': '1-2'}, '6': {'phi': -72.... | {'MAN8-NAG11': {'2': {'phi': -86.35, 'psi': -77.86, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -69.38, 'psi': -79.23, 'strain': 0.558, 'linkage': '1-2'}, '4': {'phi': -76.46, 'psi': -77.24, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -66.16, 'psi': -93.25, 'strain': 1.237, 'linkage': '1-2'}, '6': {'phi': -72.... | null | 12 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Hybrid'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G66034LU', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491957804', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491957804', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G66034LU', 'url': 'https://glytoucan.org/Structures/Glycans/G66034LU', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G66034LU', 'url': 'https://sandbox.... | 2,629.33 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 164 | Saccharide | HexNAc(4)Hex(7)dHex(1) % 2110.75572849 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--4b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--3a1D-Man,p)--6a1D-Man,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G15664MX', 'relationship': 'ancestor'};{'related_accession': 'G58607HL', 'relationship': 'ancestor'};{'related_accession': 'G62595EF', 'relationship': 'ancestor'};{'related_accession': 'G74918QZ', 'relationship': 'ancestor'};{'related_accession': 'G62595EF', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00265/snfg.svg | ./torsion_data/GS00265_torsion_data.txt | {'Cluster 0': {'count': 32734, '3_2_phi_mean': -78.99, '3_2_psi_mean': 67.21, '4_2_phi_mean': -79.17, '4_2_psi_mean': -127.78, '5_4_phi_mean': -82.55, '5_4_psi_mean': -125.3, '6_5_phi_mean': 80.13, '6_5_psi_mean': 92.02, '10_5_phi_mean': 72.21, '10_5_psi_mean': 130.55, '7_6_phi_mean': -86.05, '7_6_psi_mean': -76.35, '8... | G43280XO | GS00265 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/8,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][Aad21122h-2a_2-6_5*NCCO/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-7-8/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,17s:n-glyco... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(=O)CO)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)... | null | 2,384.84 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Neu5Ac(a2-6);Fuc(a1-6);Neu5Gc(a2-6) | {'GlcNAc': 4, 'Man': 3, 'Gal': 2, 'Neu5Ac': 1, 'Neu5Gc': 1, 'Fuc': 1} | {'Hex': 5, 'HexNAc': 4, 'Neu5Ac': 1, 'Neu5Gc': 1, 'dHex': 1} | 46 | 42 | 67 | 13.886714 | {'Cluster 0': 40.91, 'Cluster 1': 18.98, 'Cluster 2': 15.18, 'Cluster 3': 12.89, 'Cluster 4': 12.04} | {'Cluster 0': 31.4969, 'Cluster 1': 12.5262, 'Cluster 2': 7.2043, 'Cluster 3': 6.2881, 'Cluster 4': 5.4832, 'Cluster 5': 5.147, 'Cluster 6': 4.0796, 'Cluster 7': 3.7571, 'Cluster 8': 3.3197, 'Cluster 9': 2.8435, 'Cluster 10': 2.1273, 'Cluster 11': 1.9798, 'Cluster 12': 1.7748, 'Cluster 13': 1.6923, 'Cluster 14': 1.6473... | {'2': 0.5294046011229029, '3': 0.2699214442956427, '4': 0.43031372518607114, '5': 0.4025317746426244, '6': 0.35471300334345773, '7': 0.3409443184916325, '8': 0.3301671726435444} | {'0': [5, 10, 14, 17, 19, 25, 29], '1': [4, 16, 21], '2': [2, 7, 8, 13, 26, 28], '3': [1, 3, 6, 9, 11, 12, 15, 18, 22, 23, 24, 27], '4': [0, 20]} | {'explained_variance_ratio': [0.2324564090390096, 0.10740129622324429, 0.07549644059408277, 0.04802554006499725, 0.038440046547685104, 0.03600499583559995, 0.0329320124098378, 0.02721659401445163, 0.0201888191458765, 0.01824031524469932], 'cumulative_variance': [0.2324564090390096, 0.3398577052622539, 0.415354145856336... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G97475AL | WURCS=2.0/8,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][Aad21122h-2a_2-6_5*NCCO/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-7-8/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Gca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Gc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Gc-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G21311YA | WURCS=2.0/7,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][Aad21122h-2a_2-6_5*NCCO/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4-6-7/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | null | null | Biantennary N-Glycan;Complex N-Glycan;Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG7': {'2': {'phi': -76.73, 'psi': -73.37, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -76.06, 'psi': -77.69, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -81.92, 'psi': -76.95, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -78.22, 'psi': -79.08, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -73.6... | {'MAN6-NAG7': {'2': {'phi': -76.73, 'psi': -73.37, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -76.03, 'psi': -77.73, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -81.93, 'psi': -76.98, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -78.25, 'psi': -79.09, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -73.6... | {'MAN6-NAG7': {'2': {'phi': -76.73, 'psi': -73.37, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -76.06, 'psi': -77.69, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -81.92, 'psi': -76.95, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -78.22, 'psi': -79.08, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -73.6... | null | 12 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G21311YA', 'url': 'https://www.glygen.org/glycan/G21311YA'}], 'common_name': 'Bovine', 'glygen_name': 'Bovine', 'reference_species': 'Bos taurus [9913]'};{'taxid': 9823, 'name': 'Sus scrofa', 'ann... | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Biantennary'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G43280XO', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491947887', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491947887', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G43280XO', 'url': 'https://glytoucan.org/Structures/Glycans/G43280XO', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G43280XO', 'url': 'https://sandbox.... | 2,973.49 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 164 | Saccharide | HexNAc(4)Hex(5)dHex(1)NeuAc(1)NeuGc(1) % 2384.83582939 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p--6a2D-NeuAc,p)--6a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p--6a2D-NeuGc,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G17883IE', 'relationship': 'ancestor'};{'related_accession': 'G18261NE', 'relationship': 'ancestor'};{'related_accession': 'G27327EI', 'relationship': 'ancestor'};{'related_accession': 'G29279QO', 'relationship': 'ancestor'};{'related_accession': 'G48577CN', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00266/snfg.svg | ./torsion_data/GS00266_torsion_data.txt | {'Cluster 0': {'count': 25995, '3_2_phi_mean': -80.88, '3_2_psi_mean': 73.81, '4_2_phi_mean': -75.52, '4_2_psi_mean': 108.14, '5_4_phi_mean': -119.09, '5_4_psi_mean': -136.01, '6_5_phi_mean': 77.85, '6_5_psi_mean': 86.32, '10_5_phi_mean': 75.69, '10_5_psi_mean': 128.6, '7_6_phi_mean': -82.6, '7_6_psi_mean': -76.03, '8_... | G61866NY | GS00266 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/7,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-7-5-7/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i3-j1_i4-k1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:a-lgal-HEX-1:5|6:d,16b:b-dgal-HEX-1:5,17b:a-lgal-HEX-1:5|6:d,LIN,... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](... | null | 2,223.8 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Fuc(a1-6);Neu5Ac(a2-6);Gal(b1-4) | {'GlcNAc': 4, 'Man': 3, 'Gal': 2, 'Fuc': 2, 'Neu5Ac': 1} | {'Hex': 5, 'HexNAc': 4, 'Neu5Ac': 1, 'dHex': 2} | 40 | 38 | 62 | 13.978705 | {'Cluster 0': 32.49, 'Cluster 1': 24.68, 'Cluster 2': 24.5, 'Cluster 3': 13.72, 'Cluster 4': 4.61} | {'Cluster 0': 18.4432, 'Cluster 1': 8.5229, 'Cluster 2': 8.0679, 'Cluster 3': 6.6756, 'Cluster 4': 6.4931, 'Cluster 5': 6.1106, 'Cluster 6': 5.257, 'Cluster 7': 4.792, 'Cluster 8': 4.4208, 'Cluster 9': 4.2408, 'Cluster 10': 3.8959, 'Cluster 11': 3.2772, 'Cluster 12': 3.0859, 'Cluster 13': 2.9635, 'Cluster 14': 1.9798, ... | {'2': 0.36976365126147387, '3': 0.3880265821505244, '4': 0.39204420780147736, '5': 0.29542547891911647, '6': 0.36830478636006725, '7': 0.33359153482854487, '8': 0.3281509325404062} | {'0': [6, 13, 17, 26, 29], '1': [2, 5, 9, 11, 18, 21, 23, 27, 28], '2': [0, 7, 14, 25], '3': [1, 8, 12, 19, 24], '4': [3, 4, 10, 15, 16, 20, 22, 30]} | {'explained_variance_ratio': [0.1767092779104144, 0.1244280970810142, 0.096737547897394, 0.05771029308102216, 0.04079620060185551, 0.03948544618329962, 0.0316155051094123, 0.024066200850275072, 0.01810879464140278, 0.01709308953572556], 'cumulative_variance': [0.1767092779104144, 0.3011373749914286, 0.39787492288882265... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G12426VA | WURCS=2.0/7,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-7-5-7/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i3-j1_i4-k1 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G90348RI | WURCS=2.0/6,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-6-4-6/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i3-j1_i4-k1 | null | null | Biantennary N-Glycan;Complex N-Glycan;Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG7': {'2': {'phi': -79.49, 'psi': -68.13, 'strain': 0.515, 'linkage': '1-2'}, '3': {'phi': -92.05, 'psi': -76.18, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -74.51, 'psi': -55.41, 'strain': 1.265, 'linkage': '1-2'}, '5': {'phi': -88.72, 'psi': -69.36, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -84.2... | {'MAN6-NAG7': {'2': {'phi': -79.49, 'psi': -68.13, 'strain': 0.515, 'linkage': '1-2'}, '3': {'phi': -92.08, 'psi': -76.14, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -74.48, 'psi': -55.51, 'strain': 1.265, 'linkage': '1-2'}, '5': {'phi': -88.69, 'psi': -69.41, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -84.2... | {'MAN6-NAG7': {'2': {'phi': -79.49, 'psi': -68.13, 'strain': 0.515, 'linkage': '1-2'}, '3': {'phi': -92.05, 'psi': -76.18, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -74.51, 'psi': -55.41, 'strain': 1.265, 'linkage': '1-2'}, '5': {'phi': -88.72, 'psi': -69.36, 'strain': 0.34, 'linkage': '1-2'}, '6': {'phi': -84.2... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G61866NY'}]} | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00267/snfg.svg | ./torsion_data/GS00267_torsion_data.txt | {'Cluster 0': {'count': 12409, '3_2_phi_mean': 55.8, '3_2_psi_mean': 66.55, '4_2_phi_mean': -67.95, '4_2_psi_mean': 140.61, '3_2_phi_std': 7.08, '3_2_psi_std': 8.26, '4_2_phi_std': 7.23, '4_2_psi_std': 9.22}, 'Cluster 1': {'count': 7177, '3_2_phi_mean': 74.94, '3_2_psi_mean': 72.53, '4_2_phi_mean': -62.95, '4_2_psi_mea... | G76986JJ | GS00267 | DGalpa1-3[LFucpa1-2]DGalpb1-OH | DGalpa1-3[LFucpa1-2]DGalp | Fuc(a1-2)[Gal(a1-3)]Gal | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-D-Gal | WURCS=2.0/3,3,2/[u2112h][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3/a2-b1_a3-c1 | RES,1b:b-dgal-HEX-1:5,2b:a-lgal-HEX-1:5|6:d,3b:a-dgal-HEX-1:5,LIN,1:1o(2+1)2d,2:1o(3+1)3d, | O1C(O)[C@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@@H](O[C@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H]1CO | null | 488.17 | null | Fuc(a1-2);Gal(a1-3) | {'Gal': 2, 'Fuc': 1} | {'Hex': 2, 'dHex': 1} | 6 | 10 | 15 | 9.386907 | {'Cluster 0': 41.36, 'Cluster 1': 23.92, 'Cluster 2': 17.08, 'Cluster 3': 9.68, 'Cluster 4': 7.95} | {'Cluster 0': 73.4227, 'Cluster 1': 9.7824, 'Cluster 2': 6.256, 'Cluster 3': 3.183, 'Cluster 4': 1.5665, 'Cluster 5': 1.5598, 'Cluster 6': 1.3365, 'Cluster 7': 1.2565, 'Cluster 8': 0.9332, 'Cluster 9': 0.2833, 'Cluster 10': 0.28, 'Cluster 11': 0.14} | {'2': 0.3790923999673809, '3': 0.4580531146763439, '4': 0.28318683340733997, '5': 0.2702002072757673, '6': 0.27332259813741056, '7': 0.25403400995597375, '8': 0.2264101413191327} | {'0': [1, 4, 7, 9], '1': [0], '2': [10], '3': [3, 6, 11], '4': [2, 5, 8]} | {'explained_variance_ratio': [0.15557179996841833, 0.09076288741503855, 0.07324706361146385, 0.06332333541988905, 0.04440180829777855, 0.03549183843358037, 0.029861189135023045, 0.026518054267643847, 0.02250554090178092, 0.022234833260601588], 'cumulative_variance': [0.15557179996841833, 0.24633468738345687, 0.31958175... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpa1-3[LFucpa1-2]DGalpa1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(a1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-α-D-Galp-(1→ | G11065GA | WURCS=2.0/2,3,2/[a2112h-1a_1-5][a1221m-1a_1-5]/1-2-1/a2-b1_a3-c1 | DGalpa1-3[LFucpa1-2]DGalpb1-OH | Fuc(a1-2)[Gal(a1-3)]Gal(b1- | α-D-Galp-(1→3)[α-L-Fucp-(1→2)]-β-D-Galp-(1→ | G47548GA | WURCS=2.0/3,3,2/[a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3/a2-b1_a3-c1 | null | null | null | {'GAL2-FUC4': {'2': {'phi': -65.55, 'psi': 143.77, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -56.97, 'psi': 148.38, 'strain': 1.49, 'linkage': '1-2'}, '4': {'phi': -68.2, 'psi': 135.49, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -60.16, 'psi': 146.55, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -91.6,... | {'GAL2-FUC4': {'2': {'phi': -65.55, 'psi': 143.77, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -56.98, 'psi': 148.41, 'strain': 1.49, 'linkage': '1-2'}, '4': {'phi': -68.17, 'psi': 135.38, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -60.22, 'psi': 146.57, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -91.6... | {'GAL2-FUC4': {'2': {'phi': -65.55, 'psi': 143.77, 'strain': 0.394, 'linkage': '1-2'}, '3': {'phi': -56.97, 'psi': 148.38, 'strain': 1.49, 'linkage': '1-2'}, '4': {'phi': -68.2, 'psi': 135.49, 'strain': 0.149, 'linkage': '1-2'}, '5': {'phi': -60.16, 'psi': 146.55, 'strain': 0.394, 'linkage': '1-2'}, '6': {'phi': -91.6,... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G76986JJ'}]} | 3 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G76986JJ', 'url': 'https://glycosmos.org/glycans/show/G76986JJ'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491862712', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491862712', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '2113', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10696', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+10696', 'database': 'Ca... | 628.33 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | Hex(2)dHex(1) % 488.17412057 | freeEnd--?D-Gal(--2a1L-Fuc,p)--3a1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000015', 'name': 'a-Gal antigen', 'synonym': 'alpha-Gal antigen'} | {'related_accession': 'G09551MC', 'relationship': 'ancestor'};{'related_accession': 'G42530VR', 'relationship': 'ancestor'};{'related_accession': 'G76222MD', 'relationship': 'ancestor'};{'related_accession': 'G89864HJ', 'relationship': 'ancestor'};{'related_accession': 'G89864HJ', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00268/snfg.svg | ./torsion_data/GS00268_torsion_data.txt | {'Cluster 0': {'count': 17676, '3_2_phi_mean': -78.36, '3_2_psi_mean': 33.76, '4_2_phi_mean': -76.55, '4_2_psi_mean': -123.18, '5_4_phi_mean': -77.05, '5_4_psi_mean': -123.82, '6_5_phi_mean': 71.48, '6_5_psi_mean': -63.01, '7_5_phi_mean': 72.83, '7_5_psi_mean': 129.43, '3_2_phi_std': 17.05, '3_2_psi_std': 149.27, '4_2_... | G16119YF | GS00268 | DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Man(a1-3)[Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | α-D-Manp-(1→3)[α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/5,6,5/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-4-5/a4-b1_a6-f1_b4-c1_c3-d1_c6-e1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:a-dman-HEX-1:5,8b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:5o(6+1)7d,7:1o(6+1)8d, | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1CO[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O | FM3 | 1,056.39 | {'motif': 'G00026MO', 'motif_label': 'N-Glycan core basic'} | Man(a1-3);Man(a1-6);Fuc(a1-6) | {'Man': 3, 'GlcNAc': 2, 'Fuc': 1} | {'Hex': 3, 'HexNAc': 2, 'dHex': 1} | 17 | 19 | 30 | 12.134306 | {'Cluster 0': 44.19, 'Cluster 1': 25.13, 'Cluster 2': 14.51, 'Cluster 3': 11.17, 'Cluster 4': 5.0} | {'Cluster 0': 44.2606, 'Cluster 1': 14.5685, 'Cluster 2': 6.9393, 'Cluster 3': 5.7844, 'Cluster 4': 5.4345, 'Cluster 5': 5.3645, 'Cluster 6': 4.5245, 'Cluster 7': 3.3472, 'Cluster 8': 3.1347, 'Cluster 9': 1.6223, 'Cluster 10': 1.2999, 'Cluster 11': 0.9824, 'Cluster 12': 0.6799, 'Cluster 13': 0.5649, 'Cluster 14': 0.47,... | {'2': 0.3366992868006101, '3': 0.34848895360729315, '4': 0.351362488051141, '5': 0.26591984209306085, '6': 0.18192364999986896, '7': 0.24276434641180852, '8': 0.24458867463206177} | {'0': [7, 10, 20], '1': [2, 11, 17, 18, 19], '2': [0, 4, 8, 15], '3': [3, 14, 16], '4': [1, 5, 6, 9, 12, 13]} | {'explained_variance_ratio': [0.1560736676486258, 0.11472197276619267, 0.07941799554011938, 0.058602697442439115, 0.04343502832882781, 0.03446796392363451, 0.02892691325757606, 0.02818116867238702, 0.025723123922233998, 0.024890599684037992], 'cumulative_variance': [0.1560736676486258, 0.27079564041481846, 0.3502136359... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Man(a1-3)[Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | α-D-Manp-(1→3)[α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G04387LP | WURCS=2.0/5,6,5/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-4-5/a4-b1_a6-f1_b4-c1_c3-d1_c6-e1 | DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Man(a1-3)[Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | α-D-Manp-(1→3)[α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G82348BZ | WURCS=2.0/4,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-3-4/a4-b1_a6-f1_b4-c1_c3-d1_c6-e1 | FM3 | null | Fucosylated N-Glycan;N-Glycan;Oligomannose | {'MAN5-MAN7': {'2': {'phi': 81.7, 'psi': -84.36, 'strain': 1.349, 'linkage': '1-3'}, '3': {'phi': 77.26, 'psi': -88.55, 'strain': 0.747, 'linkage': '1-3'}, '4': {'phi': 68.33, 'psi': -104.42, 'strain': 0.588, 'linkage': '1-3'}, '5': {'phi': 70.25, 'psi': -78.31, 'strain': 1.417, 'linkage': '1-3'}, '6': {'phi': 65.05, '... | {'MAN5-MAN7': {'2': {'phi': 81.7, 'psi': -84.36, 'strain': 1.349, 'linkage': '1-3'}, '3': {'phi': 77.24, 'psi': -88.45, 'strain': 0.747, 'linkage': '1-3'}, '4': {'phi': 68.27, 'psi': -104.39, 'strain': 0.588, 'linkage': '1-3'}, '5': {'phi': 70.27, 'psi': -78.31, 'strain': 1.417, 'linkage': '1-3'}, '6': {'phi': 65.07, '... | {'MAN5-MAN7': {'2': {'phi': 81.7, 'psi': -84.36, 'strain': 1.349, 'linkage': '1-3'}, '3': {'phi': 77.26, 'psi': -88.55, 'strain': 0.747, 'linkage': '1-3'}, '4': {'phi': 68.33, 'psi': -104.42, 'strain': 0.588, 'linkage': '1-3'}, '5': {'phi': 70.25, 'psi': -78.31, 'strain': 1.417, 'linkage': '1-3'}, '6': {'phi': 65.05, '... | {'taxon_id': '10029', 'taxon_label': 'Cricetulus griseus (Chinese hamster)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G16119YF'}]};{'taxon_id': '55057', 'taxon_label': 'Mamestra brassicae (cabbage moth)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org... | 6 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G16119YF', 'url': 'https://glycosmos.org/glycans/show/G16119YF'}, {'database': 'Subsumption', 'id': 'G45995IV', 'url': 'https://www.glygen.org/glycan/G45995IV'}, {'database': 'Subsumption', 'id': 'G82348BZ... | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Paucimannose'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G16119YF', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491843315', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491843315', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1282', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10594', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+10594', 'database': 'Ca... | 1,322.68 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 328 | Saccharide | HexNAc(2)Hex(3)dHex(1) % 1056.38568928 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p)--6a1D-Man,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G11877AW', 'relationship': 'ancestor'};{'related_accession': 'G16522ZC', 'relationship': 'ancestor'};{'related_accession': 'G20956ZV', 'relationship': 'ancestor'};{'related_accession': 'G23088YX', 'relationship': 'ancestor'};{'related_accession': 'G30031BF', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00269/snfg.svg | ./torsion_data/GS00269_torsion_data.txt | {'Cluster 0': {'count': 31380, '3_2_phi_mean': -79.49, '3_2_psi_mean': 80.06, '4_2_phi_mean': -77.87, '4_2_psi_mean': -126.41, '5_4_phi_mean': -78.18, '5_4_psi_mean': -123.14, '6_5_phi_mean': 76.99, '6_5_psi_mean': 91.11, '10_5_phi_mean': 71.94, '10_5_psi_mean': 133.54, '7_6_phi_mean': -78.86, '7_6_psi_mean': -43.94, '... | G59825KE | GS00269 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-2-6/a4-b1_a6-k1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C... | FA3G2 | 1,989.73 | null | Fuc(a1-6);Gal(b1-4);GlcNAc(b1-6) | {'GlcNAc': 5, 'Man': 3, 'Gal': 2, 'Fuc': 1} | {'Hex': 5, 'HexNAc': 5, 'dHex': 1} | 1 | 5 | 6 | 13.537866 | {'Cluster 0': 39.22, 'Cluster 1': 21.28, 'Cluster 2': 16.99, 'Cluster 3': 15.62, 'Cluster 4': 6.89} | {'Cluster 0': 32.228, 'Cluster 1': 10.8952, 'Cluster 2': 8.5541, 'Cluster 3': 7.5942, 'Cluster 4': 6.5456, 'Cluster 5': 4.3796, 'Cluster 6': 3.8171, 'Cluster 7': 3.2472, 'Cluster 8': 3.0559, 'Cluster 9': 2.651, 'Cluster 10': 2.5535, 'Cluster 11': 2.2935, 'Cluster 12': 2.1985, 'Cluster 13': 2.1398, 'Cluster 14': 1.8348,... | {'2': 0.36341189959253967, '3': 0.2807913372330043, '4': 0.30220877358744674, '5': 0.29302664849186555, '6': 0.2352645455941825, '7': 0.2847566737844064, '8': 0.2589232989917826} | {'0': [4, 6, 10, 18, 26, 27], '1': [1, 3, 5, 8, 12, 16, 17, 19, 23], '2': [20, 24], '3': [2, 9, 13, 14, 15, 25], '4': [0, 7, 11, 21, 22]} | {'explained_variance_ratio': [0.16968214595171785, 0.07339389174054302, 0.07051751650276002, 0.06673860774332843, 0.0546107456138242, 0.04366422329684406, 0.0408166916941666, 0.026766216914968357, 0.020703940081747755, 0.019555891971304678], 'cumulative_variance': [0.16968214595171785, 0.24307603769226088, 0.3135935541... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G62900AI | WURCS=2.0/6,11,10/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-2-6/a4-b1_a6-k1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G97159KS | WURCS=2.0/5,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-3-1-4-1-5/a4-b1_a6-k1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1 | FA3G2 | null | Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG8': {'2': {'phi': -90.73, 'psi': -70.96, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -81.54, 'psi': -72.22, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -106.35, 'psi': -90.43, 'strain': 2.408, 'linkage': '1-2'}, '5': {'phi': -99.98, 'psi': -64.0, 'strain': 0.567, 'linkage': '1-2'}, '6': {'phi': -69.0... | {'MAN6-NAG8': {'2': {'phi': -90.73, 'psi': -70.96, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -81.47, 'psi': -72.32, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -106.32, 'psi': -90.48, 'strain': 2.408, 'linkage': '1-2'}, '5': {'phi': -100.05, 'psi': -63.95, 'strain': 1.173, 'linkage': '1-2'}, '6': {'phi': -69... | {'MAN6-NAG8': {'2': {'phi': -90.73, 'psi': -70.96, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -81.54, 'psi': -72.22, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -106.35, 'psi': -90.43, 'strain': 2.408, 'linkage': '1-2'}, '5': {'phi': -99.98, 'psi': -64.0, 'strain': 0.567, 'linkage': '1-2'}, '6': {'phi': -69.0... | null | 11 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G59825KE', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': 'G59825KE', 'url': 'https://glytoucan.org/Structures/Glycans/G59825KE', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G59825KE', 'url': 'https://sandbox.glyomics.org/explore.html?G59825KE', 'database': 'SandBox', 'categories': ['Enzyme and Pathway']};{'id': 'G59825KE', 'url': 'https://gnome.glyom... | 2,466.26 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 179 | Saccharide | HexNAc(5)Hex(5)dHex(1) % 1989.72945409 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G25235BX', 'relationship': 'ancestor'};{'related_accession': 'G28171JR', 'relationship': 'ancestor'};{'related_accession': 'G41071NU', 'relationship': 'ancestor'};{'related_accession': 'G64730RH', 'relationship': 'ancestor'};{'related_accession': 'G67026KJ', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.8.1'} |
./raw_dataGS00270/snfg.svg | ./torsion_data/GS00270_torsion_data.txt | {'Cluster 0': {'count': 11019, '3_2_phi_mean': -81.9, '3_2_psi_mean': -129.66, '4_3_phi_mean': -68.44, '4_3_psi_mean': -121.4, '5_4_phi_mean': 77.1, '5_4_psi_mean': -74.19, '10_4_phi_mean': 72.56, '10_4_psi_mean': 119.53, '6_5_phi_mean': -61.24, '6_5_psi_mean': 50.78, '8_5_phi_mean': -69.54, '8_5_psi_mean': -78.88, '7_... | G57277JN | GS00270 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,14,13/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-6-4-2-6-2-6/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_h4-i1_j2-k1_j6-m1_k4-l1_m4-n1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:a-dman-HEX-1:5,15b:b-dglc-HEX-1:5,16s:n-acetyl,17b:b-dgal-HEX-1:5,18b:b-dglc-HEX-1:5,19s:n-ace... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | null | 2,516.91 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Gal(b1-4) | {'GlcNAc': 6, 'Gal': 4, 'Man': 3, 'Fuc': 1} | {'Hex': 7, 'HexNAc': 6, 'dHex': 1} | 45 | 43 | 70 | 13.356306 | {'Cluster 0': 27.54, 'Cluster 1': 24.74, 'Cluster 2': 20.93, 'Cluster 3': 18.07, 'Cluster 4': 8.71} | {'Cluster 0': 17.0608, 'Cluster 1': 17.0383, 'Cluster 2': 6.9743, 'Cluster 3': 6.5093, 'Cluster 4': 6.3994, 'Cluster 5': 5.9669, 'Cluster 6': 4.5645, 'Cluster 7': 4.4296, 'Cluster 8': 3.7996, 'Cluster 9': 3.5471, 'Cluster 10': 3.2022, 'Cluster 11': 3.0722, 'Cluster 12': 3.0172, 'Cluster 13': 2.4073, 'Cluster 14': 2.134... | {'2': 0.45928923791043474, '3': 0.500701672789973, '4': 0.5765832718006999, '5': 0.5083737967867724, '6': 0.4403406293060099, '7': 0.3678418619426714, '8': 0.3538239530365449} | {'0': [0, 11, 13, 14, 21, 26], '1': [5, 15, 17, 22], '2': [1, 4, 6, 8, 9, 18, 19, 23], '3': [2, 12, 16], '4': [3, 7, 10, 20, 24, 25]} | {'explained_variance_ratio': [0.21115805702377016, 0.1004946634859075, 0.08573942713111156, 0.06252824650020501, 0.057716434456196286, 0.0354694000877076, 0.03224238288006306, 0.02769488879898679, 0.02158761114976402, 0.016395670841817638], 'cumulative_variance': [0.21115805702377016, 0.3116527205096777, 0.397392147640... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G90996TK | WURCS=2.0/6,14,13/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-6-4-2-6-2-6/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_h4-i1_j2-k1_j6-m1_k4-l1_m4-n1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G95490LA | WURCS=2.0/5,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-1-5-3-1-5-1-5/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_h4-i1_j2-k1_j6-m1_k4-l1_m4-n1 | null | null | N-Glycan | {'MAN5-NAG8': {'2': {'phi': -71.4, 'psi': -73.92, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -74.18, 'psi': -67.11, 'strain': 0.515, 'linkage': '1-2'}, '4': {'phi': -77.92, 'psi': -60.99, 'strain': 0.515, 'linkage': '1-2'}, '5': {'phi': -51.49, 'psi': -69.43, 'strain': 1.644, 'linkage': '1-2'}, '6': {'phi': -64.1... | {'MAN5-NAG8': {'2': {'phi': -71.4, 'psi': -73.92, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -74.2, 'psi': -67.09, 'strain': 0.515, 'linkage': '1-2'}, '4': {'phi': -77.91, 'psi': -61.0, 'strain': 0.515, 'linkage': '1-2'}, '5': {'phi': -51.48, 'psi': -69.4, 'strain': 1.644, 'linkage': '1-2'}, '6': {'phi': -64.23, ... | {'MAN5-NAG8': {'2': {'phi': -71.4, 'psi': -73.92, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -74.18, 'psi': -67.11, 'strain': 0.515, 'linkage': '1-2'}, '4': {'phi': -77.92, 'psi': -60.99, 'strain': 0.515, 'linkage': '1-2'}, '5': {'phi': -51.49, 'psi': -69.43, 'strain': 1.644, 'linkage': '1-2'}, '6': {'phi': -64.1... | null | 14 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G57277JN', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491856481', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491856481', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G57277JN', 'url': 'https://glytoucan.org/Structures/Glycans/G57277JN', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G57277JN', 'url': 'https://sandbox.... | 3,119.59 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 140 | Saccharide | HexNAc(6)Hex(7)dHex(1) % 2516.9144737 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--4b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G49739MP', 'relationship': 'ancestor'};{'related_accession': 'G80479JV', 'relationship': 'ancestor'};{'related_accession': 'G83783DS', 'relationship': 'ancestor'};{'related_accession': 'G91316EK', 'relationship': 'ancestor'};{'related_accession': 'G49739MP', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00271/snfg.svg | ./torsion_data/GS00271_torsion_data.txt | {'Cluster 0': {'count': 40324, '3_2_phi_mean': -77.61, '3_2_psi_mean': 32.85, '4_2_phi_mean': -77.63, '4_2_psi_mean': -117.1, '5_4_phi_mean': -74.68, '5_4_psi_mean': -122.48, '6_5_phi_mean': 73.26, '6_5_psi_mean': 116.74, '11_5_phi_mean': -57.42, '11_5_psi_mean': -109.3, '12_5_phi_mean': 77.64, '12_5_psi_mean': 105.5, ... | G86766IO | GS00271 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-4-2-5-2-5-6/a4-b1_a6-m1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_h6-k1_i4-j1_k4-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:b-dglc-HEX-1:5,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:b-dgal-HEX-1:5,19b:a-lgal-HEX-1:5|... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O[C@@H]4O[C@H](CO)[C... | FA3G3B | 2,354.86 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Gal(b1-4);Fuc(a1-6);GlcNAc(b1-4) | {'GlcNAc': 6, 'Gal': 3, 'Man': 3, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 6, 'dHex': 1} | 42 | 40 | 65 | 12.95636 | {'Cluster 0': 50.4, 'Cluster 1': 16.88, 'Cluster 2': 15.99, 'Cluster 3': 9.12, 'Cluster 4': 7.62} | {'Cluster 0': 43.7481, 'Cluster 1': 5.9819, 'Cluster 2': 5.9369, 'Cluster 3': 5.7182, 'Cluster 4': 4.7058, 'Cluster 5': 4.1321, 'Cluster 6': 3.8471, 'Cluster 7': 3.6809, 'Cluster 8': 3.3772, 'Cluster 9': 3.1959, 'Cluster 10': 2.451, 'Cluster 11': 2.1185, 'Cluster 12': 2.0123, 'Cluster 13': 1.7186, 'Cluster 14': 1.6698,... | {'2': 0.49358472683442606, '3': 0.5296082043151062, '4': 0.5832191248116156, '5': 0.540337740942795, '6': 0.328583305022277, '7': 0.2764786420170142, '8': 0.2586547264886259} | {'0': [4, 9, 12, 17, 23], '1': [6, 8, 24], '2': [2, 5, 10, 11, 14, 16, 20, 22], '3': [1, 3, 7, 15, 19, 21], '4': [0, 13, 18]} | {'explained_variance_ratio': [0.1962737360005206, 0.07479167553661982, 0.06259772074970335, 0.05132143007361936, 0.043800712909125, 0.04028196332796836, 0.030602423397764606, 0.027484392833560838, 0.02584687952791072, 0.020488805517093568], 'cumulative_variance': [0.1962737360005206, 0.2710654115371404, 0.3336631322868... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G54961LR | WURCS=2.0/6,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-4-2-5-2-5-6/a4-b1_a6-m1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_h6-k1_i4-j1_k4-l1 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G99770NO | WURCS=2.0/5,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-1-3-1-4-1-4-5/a4-b1_a6-m1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_h6-k1_i4-j1_k4-l1 | FA3G3B | null | Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG9': {'2': {'phi': -91.19, 'psi': -77.55, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -92.3, 'psi': -65.57, 'strain': 0.567, 'linkage': '1-2'}, '4': {'phi': -76.39, 'psi': -124.7, 'strain': 1.534, 'linkage': '1-2'}, '5': {'phi': -77.27, 'psi': -63.24, 'strain': 0.515, 'linkage': '1-2'}, '6': {'phi': -91.3... | {'MAN6-NAG9': {'2': {'phi': -91.19, 'psi': -77.55, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -92.33, 'psi': -65.52, 'strain': 0.567, 'linkage': '1-2'}, '4': {'phi': -76.33, 'psi': -124.74, 'strain': 1.534, 'linkage': '1-2'}, '5': {'phi': -77.27, 'psi': -63.21, 'strain': 0.515, 'linkage': '1-2'}, '6': {'phi': -91... | {'MAN6-NAG9': {'2': {'phi': -91.19, 'psi': -77.55, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -92.3, 'psi': -65.57, 'strain': 0.567, 'linkage': '1-2'}, '4': {'phi': -76.39, 'psi': -124.7, 'strain': 1.534, 'linkage': '1-2'}, '5': {'phi': -77.27, 'psi': -63.24, 'strain': 0.515, 'linkage': '1-2'}, '6': {'phi': -91.3... | null | 13 | {'taxid': 9031, 'name': 'Gallus gallus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G99770NO', 'url': 'https://www.glygen.org/glycan/G99770NO'}], 'common_name': 'Chicken', 'glygen_name': 'Chicken', 'reference_species': 'Gallus gallus [9031]'};{'taxid': 9606, 'name': 'Homo sapi... | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Bisected'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G86766IO', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491967013', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491967013', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G86766IO', 'url': 'https://glytoucan.org/Structures/Glycans/G86766IO', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G86766IO', 'url': 'https://sandbox.... | 2,915.49 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 151 | Saccharide | HexNAc(6)Hex(6)dHex(1) % 2354.8616502 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G07246CJ', 'relationship': 'ancestor'};{'related_accession': 'G34026PF', 'relationship': 'ancestor'};{'related_accession': 'G65873QS', 'relationship': 'ancestor'};{'related_accession': 'G74851KS', 'relationship': 'ancestor'};{'related_accession': 'G80735OA', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00272/snfg.svg | ./torsion_data/GS00272_torsion_data.txt | {'Cluster 0': {'count': 22751, '3_2_phi_mean': -79.9, '3_2_psi_mean': 56.79, '4_2_phi_mean': -77.32, '4_2_psi_mean': -125.03, '5_4_phi_mean': -76.65, '5_4_psi_mean': -121.3, '6_5_phi_mean': 76.8, '6_5_psi_mean': 85.04, '9_5_phi_mean': 71.92, '9_5_psi_mean': 135.47, '7_6_phi_mean': -78.71, '7_6_psi_mean': -35.54, '8_6_p... | G74161MJ | GS00272 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,10,9/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-2-6/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-i1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dman-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)... | null | 1,827.68 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Fuc(a1-6);GlcNAc(b1-2);Gal(b1-4);GlcNAc(b1-6) | {'GlcNAc': 5, 'Man': 3, 'Gal': 1, 'Fuc': 1} | {'Hex': 4, 'HexNAc': 5, 'dHex': 1} | 32 | 31 | 50 | 13.587251 | {'Cluster 0': 28.44, 'Cluster 1': 25.32, 'Cluster 2': 18.71, 'Cluster 3': 15.73, 'Cluster 4': 11.81} | {'Cluster 0': 29.947, 'Cluster 1': 11.8501, 'Cluster 2': 8.8679, 'Cluster 3': 8.1092, 'Cluster 4': 6.8843, 'Cluster 5': 5.5819, 'Cluster 6': 5.127, 'Cluster 7': 4.5695, 'Cluster 8': 3.9221, 'Cluster 9': 2.961, 'Cluster 10': 2.8085, 'Cluster 11': 1.8698, 'Cluster 12': 0.8987, 'Cluster 13': 0.8912, 'Cluster 14': 0.7812, ... | {'2': 0.364202742428915, '3': 0.4061641524608185, '4': 0.2970558044239892, '5': 0.302920162279276, '6': 0.2963455671765362, '7': 0.3001168779046129, '8': 0.28148632840740023} | {'0': [3, 11, 15, 17, 20], '1': [2, 10, 16], '2': [5, 18, 22], '3': [0, 1, 4, 7, 8, 9, 12, 13, 14, 19, 23, 24, 26, 27], '4': [6, 21, 25]} | {'explained_variance_ratio': [0.15661545228949203, 0.11222914635850885, 0.07231884602717101, 0.05550968519071061, 0.04737103616629333, 0.040479849608168764, 0.03317685704720041, 0.027375531620461552, 0.021518361566560965, 0.018991759607561574], 'cumulative_variance': [0.15661545228949203, 0.26884459864800087, 0.3411634... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G51041MW | WURCS=2.0/6,10,9/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-2-6/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-i1 | DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G11012NG | WURCS=2.0/5,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-3-1-1-5/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-i1 | null | null | Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG8': {'2': {'phi': -85.09, 'psi': -69.77, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -67.51, 'psi': -80.85, 'strain': 0.758, 'linkage': '1-2'}, '4': {'phi': -101.88, 'psi': -77.01, 'strain': 0.927, 'linkage': '1-2'}, '5': {'phi': -62.73, 'psi': -29.98, 'strain': 2.541, 'linkage': '1-2'}, '6': {'phi': -64.... | {'MAN6-NAG8': {'2': {'phi': -85.09, 'psi': -69.77, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -67.48, 'psi': -80.88, 'strain': 0.758, 'linkage': '1-2'}, '4': {'phi': -101.91, 'psi': -77.04, 'strain': 0.927, 'linkage': '1-2'}, '5': {'phi': -62.73, 'psi': -29.99, 'strain': 2.541, 'linkage': '1-2'}, '6': {'phi': -64.... | {'MAN6-NAG8': {'2': {'phi': -85.09, 'psi': -69.77, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -67.51, 'psi': -80.85, 'strain': 0.758, 'linkage': '1-2'}, '4': {'phi': -101.88, 'psi': -77.01, 'strain': 0.927, 'linkage': '1-2'}, '5': {'phi': -62.73, 'psi': -29.98, 'strain': 2.541, 'linkage': '1-2'}, '6': {'phi': -64.... | null | 10 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Triantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G74161MJ', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491961336', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491961336', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G74161MJ', 'url': 'https://glytoucan.org/Structures/Glycans/G74161MJ', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G74161MJ', 'url': 'https://sandbox.... | 2,262.16 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 196 | Saccharide | HexNAc(5)Hex(4)dHex(1) % 1827.6766306 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p)--6b1D-GlcNAc,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G12715BN', 'relationship': 'ancestor'};{'related_accession': 'G30189TQ', 'relationship': 'ancestor'};{'related_accession': 'G42124LM', 'relationship': 'ancestor'};{'related_accession': 'G68318VE', 'relationship': 'ancestor'};{'related_accession': 'G80294ZS', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00273/snfg.svg | ./torsion_data/GS00273_torsion_data.txt | {'Cluster 0': {'count': 10654, '3_2_phi_mean': -79.29, '3_2_psi_mean': -122.4, '4_3_phi_mean': -84.62, '4_3_psi_mean': -126.08, '5_4_phi_mean': 78.69, '5_4_psi_mean': 83.03, '8_4_phi_mean': 71.36, '8_4_psi_mean': 121.54, '6_5_phi_mean': -83.67, '6_5_psi_mean': -79.0, '7_6_phi_mean': -74.66, '7_6_psi_mean': -121.96, '9_... | G98485VQ | GS00273 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,10,9/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-4-2-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_i4-j1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-dman-HEX-1:5,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:b-dgal-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6o(2+1)7d,7:7... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O... | null | 1,786.65 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Gal(b1-4) | {'GlcNAc': 4, 'Man': 3, 'Gal': 2, 'Fuc': 1} | {'Hex': 5, 'HexNAc': 4, 'dHex': 1} | 31 | 31 | 50 | 13.531848 | {'Cluster 0': 26.63, 'Cluster 1': 24.03, 'Cluster 2': 23.45, 'Cluster 3': 18.44, 'Cluster 4': 7.45} | {'Cluster 0': 15.9634, 'Cluster 1': 15.9109, 'Cluster 2': 13.7286, 'Cluster 3': 7.3193, 'Cluster 4': 7.1918, 'Cluster 5': 6.8843, 'Cluster 6': 6.2794, 'Cluster 7': 4.4496, 'Cluster 8': 4.0496, 'Cluster 9': 2.5772, 'Cluster 10': 2.4223, 'Cluster 11': 1.8673, 'Cluster 12': 1.6648, 'Cluster 13': 1.6498, 'Cluster 14': 1.45... | {'2': 0.21529577300576713, '3': 0.33087964936704634, '4': 0.21325356953678362, '5': 0.22744835439796837, '6': 0.2126024291408644, '7': 0.222719964538194, '8': 0.20346150690090892} | {'0': [4, 7, 10, 14, 18, 21, 22], '1': [13, 23, 26], '2': [1, 6, 12, 15, 16, 17, 19], '3': [0, 2, 9, 11, 20, 24], '4': [3, 5, 8, 25, 27]} | {'explained_variance_ratio': [0.1633895714764514, 0.1238053114376135, 0.08479139731581216, 0.07107834761686779, 0.057741399362042825, 0.048090581548557804, 0.035603489145043264, 0.01814819063438026, 0.01657141569772591, 0.014734323251396689], 'cumulative_variance': [0.1633895714764514, 0.2871948829140649, 0.37198628022... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G53894HD | WURCS=2.0/6,10,9/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-4-2-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_i4-j1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G65597BI | WURCS=2.0/5,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-3-1-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_i4-j1 | null | null | Biantennary N-Glycan;Complex N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -84.52, 'psi': -74.76, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -72.87, 'psi': -78.09, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -62.73, 'psi': -75.42, 'strain': 0.558, 'linkage': '1-2'}, '5': {'phi': -84.37, 'psi': -74.43, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -99.09... | {'MAN5-NAG6': {'2': {'phi': -84.52, 'psi': -74.76, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -72.85, 'psi': -78.08, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -62.74, 'psi': -75.37, 'strain': 0.558, 'linkage': '1-2'}, '5': {'phi': -84.29, 'psi': -74.49, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -99.03... | {'MAN5-NAG6': {'2': {'phi': -84.52, 'psi': -74.76, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -72.87, 'psi': -78.09, 'strain': 0.143, 'linkage': '1-2'}, '4': {'phi': -62.73, 'psi': -75.42, 'strain': 0.558, 'linkage': '1-2'}, '5': {'phi': -84.37, 'psi': -74.43, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -99.09... | {'taxon_id': '3052731', 'taxon_label': 'Respirovirus muris', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G98485VQ'}]} | 10 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Biantennary'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G98485VQ', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491927420', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491927420', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '16245', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '1918', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+1918', 'database': 'Car... | 2,221.14 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 196 | Saccharide | HexNAc(4)Hex(5)dHex(1) % 1786.65008149 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--6a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G01924ZE', 'relationship': 'ancestor'};{'related_accession': 'G09171UI', 'relationship': 'ancestor'};{'related_accession': 'G10567NI', 'relationship': 'ancestor'};{'related_accession': 'G76679QH', 'relationship': 'ancestor'};{'related_accession': 'G82883WS', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00275/snfg.svg | ./torsion_data/GS00275_torsion_data.txt | {'Cluster 0': {'count': 12038, '3_2_phi_mean': -78.19, '3_2_psi_mean': -128.83, '4_3_phi_mean': -75.26, '4_3_psi_mean': -124.38, '5_4_phi_mean': 72.51, '5_4_psi_mean': -36.39, '9_4_phi_mean': 72.83, '9_4_psi_mean': 106.27, '6_5_phi_mean': -81.41, '6_5_psi_mean': -90.46, '8_6_phi_mean': -78.5, '8_6_psi_mean': -52.9, '10... | G84365LE | GS00275 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-5-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g2-h1_i2-j1_j3-k1_j4-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-lgal-HEX-1:5|6:d,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:a-lgal-HEX-1:5|6:d,16b:b-dgal-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](... | null | 2,078.77 | {'motif': 'G00052MO', 'motif_label': 'Ley'};{'motif': 'G00052MO', 'motif_label': 'Lewis b'};{'motif': 'G00052MO', 'motif_label': 'Leb'};{'motif': 'G00052MO', 'motif_label': 'Blood group H (type 2)'};{'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'} | Fuc(a1-3);Fuc(a1-2);Gal(b1-4) | {'GlcNAc': 4, 'Fuc': 3, 'Man': 3, 'Gal': 2} | {'Hex': 5, 'HexNAc': 4, 'dHex': 3} | 35 | 35 | 58 | 13.991698 | {'Cluster 0': 30.09, 'Cluster 1': 25.6, 'Cluster 2': 17.57, 'Cluster 3': 14.01, 'Cluster 4': 12.73} | {'Cluster 0': 12.5287, 'Cluster 1': 12.1263, 'Cluster 2': 10.5139, 'Cluster 3': 10.1565, 'Cluster 4': 7.6067, 'Cluster 5': 5.5894, 'Cluster 6': 4.9945, 'Cluster 7': 4.532, 'Cluster 8': 3.8296, 'Cluster 9': 3.6646, 'Cluster 10': 3.6621, 'Cluster 11': 3.5996, 'Cluster 12': 3.1197, 'Cluster 13': 2.2273, 'Cluster 14': 1.97... | {'2': 0.35752116985481414, '3': 0.28561587092802326, '4': 0.29072655954258897, '5': 0.3060359256830384, '6': 0.27426347658226696, '7': 0.2454921686840455, '8': 0.2622183796376182} | {'0': [1, 4, 5, 8, 15, 20, 25], '1': [10, 13, 21, 22, 30], '2': [2, 3, 6, 11, 18, 23, 26, 29], '3': [7, 12, 27], '4': [0, 9, 14, 16, 17, 19, 24, 28]} | {'explained_variance_ratio': [0.19586564722534575, 0.1009274581925167, 0.09261369095038387, 0.06495034686041595, 0.04780062347525918, 0.0345180867430452, 0.03197808118572844, 0.020791277698506028, 0.01770309495407058, 0.01629628892761536], 'cumulative_variance': [0.19586564722534575, 0.2967931054178624, 0.3894067963682... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G85149ZK | WURCS=2.0/6,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-5-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g2-h1_i2-j1_j3-k1_j4-l1 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G40650WW | WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-4-3-1-4-5/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g2-h1_i2-j1_j3-k1_j4-l1 | null | null | Biantennary N-Glycan;Complex N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -110.31, 'psi': -97.03, 'strain': 2.862, 'linkage': '1-2'}, '3': {'phi': -70.69, 'psi': -94.67, 'strain': 0.971, 'linkage': '1-2'}, '4': {'phi': -59.66, 'psi': -71.59, 'strain': 1.809, 'linkage': '1-2'}, '5': {'phi': -66.09, 'psi': -68.6, 'strain': 0.982, 'linkage': '1-2'}, '6': {'phi': -76.... | {'MAN5-NAG6': {'2': {'phi': -110.31, 'psi': -97.03, 'strain': 2.862, 'linkage': '1-2'}, '3': {'phi': -70.68, 'psi': -94.66, 'strain': 0.971, 'linkage': '1-2'}, '4': {'phi': -59.65, 'psi': -71.54, 'strain': 1.809, 'linkage': '1-2'}, '5': {'phi': -66.1, 'psi': -68.58, 'strain': 0.982, 'linkage': '1-2'}, '6': {'phi': -76.... | {'MAN5-NAG6': {'2': {'phi': -110.31, 'psi': -97.03, 'strain': 2.862, 'linkage': '1-2'}, '3': {'phi': -70.69, 'psi': -94.67, 'strain': 0.971, 'linkage': '1-2'}, '4': {'phi': -59.66, 'psi': -71.59, 'strain': 1.809, 'linkage': '1-2'}, '5': {'phi': -66.09, 'psi': -68.6, 'strain': 0.982, 'linkage': '1-2'}, '6': {'phi': -76.... | null | 12 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Biantennary'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G84365LE', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491865138', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491865138', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G84365LE', 'url': 'https://glytoucan.org/Structures/Glycans/G84365LE', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G84365LE', 'url': 'https://sandbox.... | 2,569.31 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 164 | Saccharide | HexNAc(4)Hex(5)dHex(3) % 2078.76589923 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--2a1L-Fuc,p)--6a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000019', 'name': 'Lewis y', 'synonym': 'Le^y; Ley', 'keywords': 'L... | {'related_accession': 'G04657PL', 'relationship': 'ancestor'};{'related_accession': 'G72191MQ', 'relationship': 'ancestor'};{'related_accession': 'G72323AZ', 'relationship': 'ancestor'};{'related_accession': 'G87051GH', 'relationship': 'ancestor'};{'related_accession': 'G87051GH', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00276/snfg.svg | ./torsion_data/GS00276_torsion_data.txt | {'Cluster 0': {'count': 6908, '3_2_phi_mean': -75.67, '3_2_psi_mean': 121.34, '4_3_phi_mean': -80.52, '4_3_psi_mean': -86.61, '7_3_phi_mean': -80.26, '7_3_psi_mean': 104.63, '5_4_phi_mean': 94.37, '5_4_psi_mean': 157.55, '6_4_phi_mean': -81.36, '6_4_psi_mean': -157.28, '3_2_phi_std': 12.19, '3_2_psi_std': 13.45, '4_3_p... | G04196SD | GS00276 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-6[DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-6[DGlcpNAcb1-3]DGalpb1-4DGlcp | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-6)[GlcNAc(b1-3)]Gal(b1-4)Glc | β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,6,5/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-3-4-2/a4-b1_b3-c1_b6-d1_d3-e1_d4-f1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dglc-HEX-1:5,6s:n-acetyl,7b:a-lgal-HEX-1:5|6:d,8b:b-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:2o(6+1)5d,5:5d(2+1)6n,6:5o(3+1)7d,7:5o(4+1)8d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H]3NC(C)=O)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO | null | 1,056.39 | {'motif': 'G01187XC', 'motif_label': 'Lex'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Fuc(a1-3);GlcNAc(b1-3);Gal(b1-4) | {'Gal': 2, 'GlcNAc': 2, 'Fuc': 1, 'Glc': 1} | {'Hex': 3, 'HexNAc': 2, 'dHex': 1} | 17 | 19 | 30 | 11.013329 | {'Cluster 0': 23.02, 'Cluster 1': 20.67, 'Cluster 2': 20.41, 'Cluster 3': 18.16, 'Cluster 4': 17.73} | {'Cluster 0': 20.3013, 'Cluster 1': 15.2785, 'Cluster 2': 13.4253, 'Cluster 3': 11.3522, 'Cluster 4': 5.5461, 'Cluster 5': 5.3095, 'Cluster 6': 4.6562, 'Cluster 7': 4.4629, 'Cluster 8': 3.9329, 'Cluster 9': 3.5563, 'Cluster 10': 3.4897, 'Cluster 11': 2.1531, 'Cluster 12': 2.0865, 'Cluster 13': 1.7065, 'Cluster 14': 1.4... | {'2': 0.48758842669764124, '3': 0.38164348770902473, '4': 0.3195051533529889, '5': 0.3919057302248417, '6': 0.41241440091523174, '7': 0.40857219751517315, '8': 0.4207607175072893} | {'0': [0, 8], '1': [2, 10, 16], '2': [4, 6, 7, 12, 14], '3': [1, 5, 9, 13, 15], '4': [3, 11]} | {'explained_variance_ratio': [0.28792160325409005, 0.0866015576700655, 0.06723365235660848, 0.05828286935420972, 0.04689280932980375, 0.0313191728977192, 0.02960140584738612, 0.024273520647935275, 0.020050075051057485, 0.016577888488967425], 'cumulative_variance': [0.28792160325409005, 0.37452316092415555, 0.4417568132... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-6[DGlcpNAcb1-3]DGalpb1-4DGlcpa1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-6)[GlcNAc(b1-3)]Gal(b1-4)Glc(a1- | β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G04897YL | WURCS=2.0/4,6,5/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-3-4-2/a4-b1_b3-c1_b6-d1_d3-e1_d4-f1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-6[DGlcpNAcb1-3]DGalpb1-4DGlcpb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-6)[GlcNAc(b1-3)]Gal(b1-4)Glc(b1- | β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G11353QQ | WURCS=2.0/4,6,5/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-3-4-2/a4-b1_b3-c1_b6-d1_d3-e1_d4-f1 | null | null | null | {'GAL3-NAG7': {'2': {'phi': -64.19, 'psi': -163.45, 'strain': 1.719, 'linkage': '1-3'}, '3': {'phi': -112.32, 'psi': -172.77, 'strain': 3.381, 'linkage': '1-3'}, '4': {'phi': -73.59, 'psi': -131.36, 'strain': 0.657, 'linkage': '1-3'}, '5': {'phi': -76.45, 'psi': -147.34, 'strain': 0.582, 'linkage': '1-3'}, '6': {'phi':... | {'GAL3-NAG7': {'2': {'phi': -64.19, 'psi': -163.45, 'strain': 1.719, 'linkage': '1-3'}, '3': {'phi': -112.35, 'psi': -172.75, 'strain': 3.381, 'linkage': '1-3'}, '4': {'phi': -73.52, 'psi': -131.42, 'strain': 0.657, 'linkage': '1-3'}, '5': {'phi': -76.43, 'psi': -147.37, 'strain': 0.582, 'linkage': '1-3'}, '6': {'phi':... | {'GAL3-NAG7': {'2': {'phi': -64.19, 'psi': -163.45, 'strain': 1.719, 'linkage': '1-3'}, '3': {'phi': -112.32, 'psi': -172.77, 'strain': 3.381, 'linkage': '1-3'}, '4': {'phi': -73.59, 'psi': -131.36, 'strain': 0.657, 'linkage': '1-3'}, '5': {'phi': -76.45, 'psi': -147.34, 'strain': 0.582, 'linkage': '1-3'}, '6': {'phi':... | null | 6 | null | {'type': {'name': 'Human Milk Oligosaccharide'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G04196SD', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G04196... | {'id': '491839530', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491839530', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '13879', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '38491', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+38491', 'database': 'C... | 1,322.68 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 328 | Saccharide | HexNAc(2)Hex(3)dHex(1) % 1056.38568928 | freeEnd--?D-Glc--4b1D-Gal,p(--3b1D-GlcNAc,p)--6b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G20956ZV', 'relationship': 'ancestor'};{'related_accession': 'G63830BN', 'relationship': 'ancestor'};{'related_accession': 'G71001XO', 'relationship': 'ancestor'};{'related_accession': 'G92275SC', 'relationship': 'ancestor'};{'related_accession': 'G20956ZV', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00277/snfg.svg | ./torsion_data/GS00277_torsion_data.txt | {'Cluster 0': {'count': 30205, '3_2_phi_mean': -80.46, '3_2_psi_mean': 97.3, '4_3_phi_mean': -84.8, '4_3_psi_mean': -123.82, '5_4_phi_mean': 80.89, '5_4_psi_mean': 93.87, '9_4_phi_mean': 72.07, '9_4_psi_mean': 131.6, '6_5_phi_mean': -84.0, '6_5_psi_mean': -74.89, '7_6_phi_mean': -76.36, '7_6_psi_mean': -124.81, '10_9_p... | G90099GV | GS00277 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,11s:n-acetyl,12b:a-dman-HEX-1:5,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:b-dgal-HEX-1:5,16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,17s:n-acety... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[... | A2G2S2 | 2,222.78 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Neu5Ac(a2-6) | {'GlcNAc': 4, 'Man': 3, 'Neu5Ac': 2, 'Gal': 2} | {'Hex': 5, 'HexNAc': 4, 'Neu5Ac': 2} | 43 | 39 | 62 | 14.281288 | {'Cluster 0': 37.75, 'Cluster 1': 25.5, 'Cluster 2': 16.68, 'Cluster 3': 13.01, 'Cluster 4': 7.06} | {'Cluster 0': 17.1933, 'Cluster 1': 17.152, 'Cluster 2': 11.6901, 'Cluster 3': 7.443, 'Cluster 4': 6.1969, 'Cluster 5': 4.987, 'Cluster 6': 4.5283, 'Cluster 7': 3.0547, 'Cluster 8': 2.7747, 'Cluster 9': 2.351, 'Cluster 10': 2.1535, 'Cluster 11': 2.0573, 'Cluster 12': 2.0423, 'Cluster 13': 1.9523, 'Cluster 14': 1.5298, ... | {'2': 0.31658076032239796, '3': 0.3254604871162861, '4': 0.38946576497907115, '5': 0.40204196112477003, '6': 0.3898263865859731, '7': 0.31350291358671006, '8': 0.2878060415339492} | {'0': [6, 8, 17, 22, 23], '1': [2, 10, 16, 24, 25, 29], '2': [0, 7, 18, 20, 31], '3': [1, 4, 12, 14, 19, 27, 30], '4': [3, 5, 9, 11, 13, 15, 21, 26, 28, 32]} | {'explained_variance_ratio': [0.19844190517721946, 0.11548330001970111, 0.09468055334344341, 0.05142256572285783, 0.043209437226039135, 0.03692891582479987, 0.023204972892270335, 0.02143099256915076, 0.018878574700417348, 0.01586427535657664], 'cumulative_variance': [0.19844190517721946, 0.3139252051969206, 0.408605758... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G60736DD | WURCS=2.0/6,11,10/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[α-D-Neup5Ac-(2→6)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G84467IZ | WURCS=2.0/5,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-4-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2 | A2G2S2 | null | Biantennary N-Glycan;Complex N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -79.09, 'psi': -72.34, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -65.35, 'psi': -72.79, 'strain': 0.558, 'linkage': '1-2'}, '4': {'phi': -80.57, 'psi': -78.22, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -72.2, 'psi': -78.9, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -67.29,... | {'MAN5-NAG6': {'2': {'phi': -79.09, 'psi': -72.34, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -65.34, 'psi': -72.79, 'strain': 0.558, 'linkage': '1-2'}, '4': {'phi': -80.61, 'psi': -78.2, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -72.22, 'psi': -78.93, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -67.26... | {'MAN5-NAG6': {'2': {'phi': -79.09, 'psi': -72.34, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -65.35, 'psi': -72.79, 'strain': 0.558, 'linkage': '1-2'}, '4': {'phi': -80.57, 'psi': -78.22, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -72.2, 'psi': -78.9, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -67.29,... | {'taxon_id': '10029', 'taxon_label': 'Cricetulus griseus (Chinese hamster)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G90099GV'}]};{'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Struc... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00279/snfg.svg | ./torsion_data/GS00279_torsion_data.txt | {'Cluster 0': {'count': 15040, '4_2_phi_mean': -74.67, '4_2_psi_mean': -146.58, '4_2_phi_std': 10.86, '4_2_psi_std': 32.88}, 'Cluster 1': {'count': 14777, '4_2_phi_mean': -75.4, '4_2_psi_mean': -125.31, '4_2_phi_std': 17.53, '4_2_psi_std': 41.48}, 'Cluster 2': {'count': 10356, '4_2_phi_mean': -77.79, '4_2_psi_mean': -1... | G01040ZV | GS00279 | DGalpb1-3[DNeup5Aca2-6]DGalpNAca1-OH | DGalpb1-3[DNeup5Aca2-6]DGalpNAc | Gal(b1-3)[Neu5Ac(a2-6)]GalNAc | β-D-Galp-(1→3)[α-D-Neup5Ac-(2→6)]-D-GalNAc | WURCS=2.0/3,3,2/[u2112h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:1o(6+2)4d,4:4d(5+1)5n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H]1CO[C@]2(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O2 | null | 674.24 | {'motif': 'G00032MO', 'motif_label': 'O-Glycan core 1 fuzzy'} | Gal(b1-3);Neu5Ac(a2-6) | {'Gal': 1, 'Neu5Ac': 1, 'GalNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Ac': 1} | 12 | 13 | 19 | 9.936072 | {'Cluster 0': 25.06, 'Cluster 1': 24.63, 'Cluster 2': 17.26, 'Cluster 3': 17.23, 'Cluster 4': 15.83} | {'Cluster 0': 24.4559, 'Cluster 1': 20.7029, 'Cluster 2': 11.9471, 'Cluster 3': 11.7355, 'Cluster 4': 9.764, 'Cluster 5': 6.7377, 'Cluster 6': 6.3577, 'Cluster 7': 4.2462, 'Cluster 8': 1.5815, 'Cluster 9': 0.7449, 'Cluster 10': 0.6649, 'Cluster 11': 0.4666, 'Cluster 12': 0.3283, 'Cluster 13': 0.2666} | {'2': 0.5077665811005985, '3': 0.3656945006182819, '4': 0.3266916037876373, '5': 0.3414742877930206, '6': 0.3605193626332569, '7': 0.3137079003359868, '8': 0.31125392516383915} | {'0': [1, 9], '1': [11, 12], '2': [0, 5, 7], '3': [2, 4, 8, 10, 13], '4': [3, 6]} | {'explained_variance_ratio': [0.26442134702152154, 0.10229331949831239, 0.04557236240119125, 0.03767583771538181, 0.03390246637293488, 0.031041090769756953, 0.027792024186206674, 0.025399233168282815, 0.021996723928230686, 0.021598093908478062], 'cumulative_variance': [0.26442134702152154, 0.3667146665198339, 0.4122870... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-3[DNeup5Aca2-6]DGalpNAca1-OH | Gal(b1-3)[Neu5Ac(a2-6)]GalNAc(a1- | β-D-Galp-(1→3)[α-D-Neup5Ac-(2→6)]-α-D-GalpNAc-(1→ | G56682BC | WURCS=2.0/3,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2 | DGalpb1-3[DNeup5Aca2-6]DGalpNAcb1-OH | Gal(b1-3)[Neu5Ac(a2-6)]GalNAc(b1- | β-D-Galp-(1→3)[α-D-Neup5Ac-(2→6)]-β-D-GalpNAc-(1→ | G28694FA | WURCS=2.0/3,3,2/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2 | null | null | null | {'A2G2-GAL4': {'2': {'phi': -73.89, 'psi': -153.84, 'strain': 0.699, 'linkage': '1-3'}, '3': {'phi': -80.29, 'psi': -144.64, 'strain': 0.737, 'linkage': '1-3'}, '4': {'phi': -75.43, 'psi': -156.38, 'strain': 0.699, 'linkage': '1-3'}, '5': {'phi': -76.36, 'psi': -100.58, 'strain': 0.136, 'linkage': '1-3'}, '6': {'phi': ... | {'A2G2-GAL4': {'2': {'phi': -73.89, 'psi': -153.84, 'strain': 0.699, 'linkage': '1-3'}, '3': {'phi': -80.34, 'psi': -144.58, 'strain': 0.737, 'linkage': '1-3'}, '4': {'phi': -75.47, 'psi': -156.38, 'strain': 0.699, 'linkage': '1-3'}, '5': {'phi': -76.33, 'psi': -100.67, 'strain': 0.136, 'linkage': '1-3'}, '6': {'phi': ... | {'A2G2-GAL4': {'2': {'phi': -73.89, 'psi': -153.84, 'strain': 0.699, 'linkage': '1-3'}, '3': {'phi': -80.29, 'psi': -144.64, 'strain': 0.737, 'linkage': '1-3'}, '4': {'phi': -75.43, 'psi': -156.38, 'strain': 0.699, 'linkage': '1-3'}, '5': {'phi': -76.36, 'psi': -100.58, 'strain': 0.136, 'linkage': '1-3'}, '6': {'phi': ... | {'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G01040ZV'}]};{'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyGen(UniCarbKB)', 'id': 'www.glygen.org/glycan/G01040ZV'}, {'labe... | 3 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G01040ZV', 'url': 'https://glycosmos.org/glycans/show/G01040ZV'}, {'database': 'Subsumption', 'id': 'G56682BC', 'url': 'https://www.glygen.org/glycan/G56682BC'}, {'database': 'Subsumption', 'id': 'G70444FA... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 1'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G01040ZV', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491838450', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491838450', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '12164', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '16004', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '5239', '... | 856.44 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(1)Hex(1)NeuAc(1) % 674.23817744 | freeEnd--?D-GalNAc(--3b1D-Gal,p)--6a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000035', 'name': '6-Sialyl-GalNAc', 'synonym': '6-Sialyl LN (type 1); 6-Sialyl LN (type 2)'} | {'related_accession': 'G05102QO', 'relationship': 'ancestor'};{'related_accession': 'G12371RP', 'relationship': 'ancestor'};{'related_accession': 'G17015OC', 'relationship': 'ancestor'};{'related_accession': 'G19671XU', 'relationship': 'ancestor'};{'related_accession': 'G22312GP', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 4}, {'field': 'total_sites', 'count': 0}], 'sort_fields': ['category', 'tissue.name', 'tissue.namespace', 'tissue.id', 'tissue.url', ... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00280/snfg.svg | ./torsion_data/GS00280_torsion_data.txt | {'Cluster 0': {'count': 8178, '3_2_phi_mean': -78.06, '3_2_psi_mean': -3.57, '4_2_phi_mean': -73.44, '4_2_psi_mean': -117.17, '3_2_phi_std': 22.34, '3_2_psi_std': 160.1, '4_2_phi_std': 27.36, '4_2_psi_std': 30.72}, 'Cluster 1': {'count': 7715, '3_2_phi_mean': -76.72, '3_2_psi_mean': -8.63, '4_2_phi_mean': -74.9, '4_2_p... | G00034MO | GS00280 | DGalpb1-3[DGlcpNAcb1-6]DGalpNAca1-OH | DGalpb1-3[DGlcpNAcb1-6]DGalpNAc | Gal(b1-3)[GlcNAc(b1-6)]GalNAc | β-D-Galp-(1→3)[β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/3,3,2/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3/a3-b1_a6-c1 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:b-dglc-HEX-1:5,5s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:1o(6+1)4d,4:4d(2+1)5n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O | null | 586.22 | {'motif': 'G00034MO', 'motif_label': 'O-Glycan core 2 fuzzy'} | Gal(b1-3);GlcNAc(b1-6) | {'Gal': 1, 'GlcNAc': 1, 'GalNAc': 1} | {'Hex': 1, 'HexNAc': 2} | 9 | 11 | 16 | 10.446862 | {'Cluster 0': 27.26, 'Cluster 1': 25.71, 'Cluster 2': 16.18, 'Cluster 3': 16.08, 'Cluster 4': 14.78} | {'Cluster 0': 41.5625, 'Cluster 1': 6.9593, 'Cluster 2': 6.4827, 'Cluster 3': 6.2327, 'Cluster 4': 5.9227, 'Cluster 5': 5.7694, 'Cluster 6': 5.2395, 'Cluster 7': 5.0828, 'Cluster 8': 4.4696, 'Cluster 9': 4.1329, 'Cluster 10': 3.7863, 'Cluster 11': 3.0397, 'Cluster 12': 0.6499, 'Cluster 13': 0.6299, 'Cluster 14': 0.04} | {'2': 0.2691687925013028, '3': 0.29761081914169885, '4': 0.3190081110859887, '5': 0.28571733629848034, '6': 0.2939782556843693, '7': 0.3103630190080961, '8': 0.2918654409073773} | {'0': [2, 7, 12, 13, 14], '1': [1, 3, 6, 11], '2': [4, 10], '3': [0], '4': [5, 8, 9]} | {'explained_variance_ratio': [0.18230734621849695, 0.13026429278912438, 0.08510119026679266, 0.06000021893366769, 0.03695307966243065, 0.03203421745693182, 0.0299989006194516, 0.026229662602188092, 0.02054993362914971, 0.01554774936156925], 'cumulative_variance': [0.18230734621849695, 0.3125716390076213, 0.397672829274... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-3[DGlcpNAcb1-6]DGalpNAca1-OH | Gal(b1-3)[GlcNAc(b1-6)]GalNAc(a1- | β-D-Galp-(1→3)[β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G00033MO | WURCS=2.0/3,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3/a3-b1_a6-c1 | DGalpb1-3[DGlcpNAcb1-6]DGalpNAcb1-OH | Gal(b1-3)[GlcNAc(b1-6)]GalNAc(b1- | β-D-Galp-(1→3)[β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G24720OO | WURCS=2.0/3,3,2/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3/a3-b1_a6-c1 | null | null | null | {'A2G2-GAL4': {'2': {'phi': -72.61, 'psi': -154.37, 'strain': 0.699, 'linkage': '1-3'}, '3': {'phi': -76.13, 'psi': -161.17, 'strain': 1.129, 'linkage': '1-3'}, '4': {'phi': -69.01, 'psi': -115.44, 'strain': 0.545, 'linkage': '1-3'}, '5': {'phi': -59.64, 'psi': -107.6, 'strain': 1.046, 'linkage': '1-3'}, '6': {'phi': -... | {'A2G2-GAL4': {'2': {'phi': -72.61, 'psi': -154.37, 'strain': 0.699, 'linkage': '1-3'}, '3': {'phi': -76.14, 'psi': -161.16, 'strain': 1.129, 'linkage': '1-3'}, '4': {'phi': -69.02, 'psi': -115.43, 'strain': 0.545, 'linkage': '1-3'}, '5': {'phi': -59.66, 'psi': -107.54, 'strain': 1.046, 'linkage': '1-3'}, '6': {'phi': ... | {'A2G2-GAL4': {'2': {'phi': -72.61, 'psi': -154.37, 'strain': 0.699, 'linkage': '1-3'}, '3': {'phi': -76.13, 'psi': -161.17, 'strain': 1.129, 'linkage': '1-3'}, '4': {'phi': -69.01, 'psi': -115.44, 'strain': 0.545, 'linkage': '1-3'}, '5': {'phi': -59.64, 'psi': -107.6, 'strain': 1.046, 'linkage': '1-3'}, '6': {'phi': -... | {'taxon_id': '9940', 'taxon_label': 'Ovis aries (sheep)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G00034MO'}]};{'taxon_id': '10029', 'taxon_label': 'Cricetulus griseus (Chinese hamster)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glyc... | 3 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G00033MO', 'url': 'https://www.glygen.org/glycan/G00033MO'}, {'database': 'Subsumption', 'id': 'G82950HY', 'url': 'https://www.glygen.org/glycan/G82950HY'}], 'common_name': 'Bovine', 'glygen_name'... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 2'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G00034MO', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491870178', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491870178', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '4989', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '14460', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+14460', 'database': 'Ca... | 740.39 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(2)Hex(1) % 586.22213341 | freeEnd--?D-GalNAc(--3b1D-Gal,p)--6b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G10698NC', 'relationship': 'ancestor'};{'related_accession': 'G27304YE', 'relationship': 'ancestor'};{'related_accession': 'G30502CS', 'relationship': 'ancestor'};{'related_accession': 'G32698TB', 'relationship': 'ancestor'};{'related_accession': 'G43592PN', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00281/snfg.svg | ./torsion_data/GS00281_torsion_data.txt | {'Cluster 0': {'count': 22781, '4_2_phi_mean': -77.87, '4_2_psi_mean': -131.86, '4_2_phi_std': 14.73, '4_2_psi_std': 52.85}, 'Cluster 1': {'count': 21648, '4_2_phi_mean': -77.88, '4_2_psi_mean': -141.7, '4_2_phi_std': 17.91, '4_2_psi_std': 45.76}, 'Cluster 2': {'count': 15333, '4_2_phi_mean': -77.78, '4_2_psi_mean': -1... | G30110UW | GS00281 | DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGalpNAca1-OH | DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGalpNAc | Neu5Ac(a2-3)Gal(b1-3)[Neu5Ac(a2-6)]GalNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→6)]-D-GalNAc | WURCS=2.0/3,4,3/[u2112h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-3/a3-b1_a6-d2_b3-c2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-acetyl,6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,7s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(3+2)4d,4:4d(5+1)5n,5:1o(6+2)6d,6:6d(5+1)7n, | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@@H](O)[C@H]1CO[C@]2(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O2 | null | 965.33 | {'motif': 'G30207PZ', 'motif_label': 'GM4'};{'motif': 'G00032MO', 'motif_label': 'O-Glycan core 1 fuzzy'} | Neu5Ac(a2-6);Neu5Ac(a2-3) | {'Neu5Ac': 2, 'Gal': 1, 'GalNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Ac': 2} | 19 | 18 | 27 | 11.605795 | {'Cluster 0': 28.47, 'Cluster 1': 27.06, 'Cluster 2': 19.16, 'Cluster 3': 14.85, 'Cluster 4': 10.46} | {'Cluster 0': 18.9181, 'Cluster 1': 13.6474, 'Cluster 2': 10.5727, 'Cluster 3': 10.5477, 'Cluster 4': 9.6015, 'Cluster 5': 8.0042, 'Cluster 6': 4.6495, 'Cluster 7': 4.3933, 'Cluster 8': 4.0171, 'Cluster 9': 3.9371, 'Cluster 10': 2.6535, 'Cluster 11': 2.4785, 'Cluster 12': 1.4736, 'Cluster 13': 1.3486, 'Cluster 14': 1.3... | {'2': 0.38942302805567813, '3': 0.31751581243154836, '4': 0.2087739899577886, '5': 0.1936932570264799, '6': 0.23095926899369076, '7': 0.2656735719156399, '8': 0.21095960583095918} | {'0': [6, 9, 17], '1': [2, 5, 8, 11], '2': [0, 7, 12, 16], '3': [3, 10, 15], '4': [1, 4, 13, 14, 18]} | {'explained_variance_ratio': [0.23053887202288043, 0.09999219247003739, 0.07962573628897736, 0.061646222665954424, 0.0386702700060621, 0.026509545977450002, 0.02424823352662175, 0.021243906506626834, 0.018657412085376555, 0.017715926924721816], 'cumulative_variance': [0.23053887202288043, 0.3305310644929178, 0.41015680... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGalpNAca1-OH | Neu5Ac(a2-3)Gal(b1-3)[Neu5Ac(a2-6)]GalNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→6)]-α-D-GalpNAc-(1→ | G01614ZM | WURCS=2.0/3,4,3/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-3/a3-b1_a6-d2_b3-c2 | DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGalpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-3)[Neu5Ac(a2-6)]GalNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→6)]-β-D-GalpNAc-(1→ | G04267XF | WURCS=2.0/3,4,3/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-3/a3-b1_a6-d2_b3-c2 | null | null | null | {'A2G2-GAL4': {'2': {'phi': -80.78, 'psi': -149.54, 'strain': 0.737, 'linkage': '1-3'}, '3': {'phi': -86.55, 'psi': -169.75, 'strain': 1.064, 'linkage': '1-3'}, '4': {'phi': -96.46, 'psi': -112.32, 'strain': 2.726, 'linkage': '1-3'}, '5': {'phi': -83.27, 'psi': -134.62, 'strain': 1.046, 'linkage': '1-3'}, '6': {'phi': ... | {'A2G2-GAL4': {'2': {'phi': -80.78, 'psi': -149.54, 'strain': 0.737, 'linkage': '1-3'}, '3': {'phi': -86.52, 'psi': -169.77, 'strain': 1.064, 'linkage': '1-3'}, '4': {'phi': -96.39, 'psi': -112.38, 'strain': 2.726, 'linkage': '1-3'}, '5': {'phi': -83.2, 'psi': -134.7, 'strain': 1.046, 'linkage': '1-3'}, '6': {'phi': -8... | {'A2G2-GAL4': {'2': {'phi': -80.78, 'psi': -149.54, 'strain': 0.737, 'linkage': '1-3'}, '3': {'phi': -86.55, 'psi': -169.75, 'strain': 1.064, 'linkage': '1-3'}, '4': {'phi': -96.46, 'psi': -112.32, 'strain': 2.726, 'linkage': '1-3'}, '5': {'phi': -83.27, 'psi': -134.62, 'strain': 1.046, 'linkage': '1-3'}, '6': {'phi': ... | {'taxon_id': '10029', 'taxon_label': 'Cricetulus griseus (Chinese hamster)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G30110UW'}]};{'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Struc... | 4 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G30110UW', 'url': 'https://glycosmos.org/glycans/show/G30110UW'}, {'database': 'Subsumption', 'id': 'G01614ZM', 'url': 'https://www.glygen.org/glycan/G01614ZM'}], 'common_name': 'Bovine', 'glygen_name': 'B... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 1'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G30110UW', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491847799', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491847799', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '12162', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '16764', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '2109', '... | 1,217.62 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(1)Hex(1)NeuAc(2) % 965.333594075 | freeEnd--?D-GalNAc(--3b1D-Gal,p--3a2D-NeuAc,p)--6a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000014', 'name': 'Di-sialyl T antigen'};{'id': 'GGM.000035', 'name': '6-Sialyl-GalNAc', 'synonym': '6-Sialyl LN (type 1); 6-Sialyl LN (type 2)'} | {'related_accession': 'G04402ZV', 'relationship': 'ancestor'};{'related_accession': 'G15864IF', 'relationship': 'ancestor'};{'related_accession': 'G20967CU', 'relationship': 'ancestor'};{'related_accession': 'G23729WG', 'relationship': 'ancestor'};{'related_accession': 'G38539SC', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 3}, {'field': 'total_sites', 'count': 0}], 'sort_fields': ['category', 'tissue.name', 'tissue.namespace', 'tissue.id', 'tissue.url', ... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00282/snfg.svg | ./torsion_data/GS00282_torsion_data.txt | {'Cluster 0': {'count': 23798, '3_2_phi_mean': -77.17, '3_2_psi_mean': 27.6, '4_2_phi_mean': -77.99, '4_2_psi_mean': -127.92, '5_4_phi_mean': -81.93, '5_4_psi_mean': -126.06, '6_5_phi_mean': 70.94, '6_5_psi_mean': 66.0, '11_5_phi_mean': 69.24, '11_5_psi_mean': 119.01, '7_6_phi_mean': -79.5, '7_6_psi_mean': -32.06, '9_6... | G16552HD | GS00282 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,15,14/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-6-4-2-6-2-6-5/a4-b1_a6-o1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_h4-i1_j2-k1_j6-m1_k4-l1_m4-n1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:a-dman-HEX-1:5,15b:b-dglc-HEX-1:5,16s:n-acetyl,17b:b-dgal-HEX-1:5,18b:b-dglc-HEX-1:5,19s:n-ace... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | null | 2,662.97 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Gal(b1-4);Fuc(a1-6) | {'GlcNAc': 6, 'Gal': 4, 'Man': 3, 'Fuc': 2} | {'Hex': 7, 'HexNAc': 6, 'dHex': 2} | 47 | 45 | 74 | 14.218185 | {'Cluster 0': 29.74, 'Cluster 1': 25.29, 'Cluster 2': 19.6, 'Cluster 3': 13.2, 'Cluster 4': 12.16} | {'Cluster 0': 17.677, 'Cluster 1': 15.7747, 'Cluster 2': 13.0112, 'Cluster 3': 8.0292, 'Cluster 4': 6.8918, 'Cluster 5': 5.2282, 'Cluster 6': 3.5609, 'Cluster 7': 3.4297, 'Cluster 8': 3.1484, 'Cluster 9': 2.6797, 'Cluster 10': 2.6397, 'Cluster 11': 2.6285, 'Cluster 12': 2.356, 'Cluster 13': 2.0648, 'Cluster 14': 2.0273... | {'2': 0.4018280679033661, '3': 0.3837753745964829, '4': 0.3559669657470786, '5': 0.2973084799220492, '6': 0.30686094321884966, '7': 0.2747973708642634, '8': 0.26975669104502276} | {'0': [1, 5, 9, 16, 22, 26], '1': [0, 13, 14, 15, 20, 24, 27, 28, 30], '2': [2, 8, 19, 29], '3': [3, 4, 7, 10, 12, 17, 18, 23, 31], '4': [6, 11, 21, 25]} | {'explained_variance_ratio': [0.16132591294560106, 0.08734619071092838, 0.07078516787043626, 0.05394673467495965, 0.04995964843697039, 0.0395271602452598, 0.037083617314816804, 0.034123550701490236, 0.029848008097711515, 0.02601216916343604], 'cumulative_variance': [0.16132591294560106, 0.24867210365652942, 0.319457271... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G32387AH | WURCS=2.0/6,15,14/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-6-4-2-6-2-6-5/a4-b1_a6-o1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_h4-i1_j2-k1_j6-m1_k4-l1_m4-n1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G59836EN | WURCS=2.0/5,15,14/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-1-5-3-1-5-1-5-4/a4-b1_a6-o1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_h4-i1_j2-k1_j6-m1_k4-l1_m4-n1 | null | null | Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG9': {'2': {'phi': -69.53, 'psi': -77.49, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -83.38, 'psi': -70.15, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -84.54, 'psi': -69.74, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -86.07, 'psi': -100.06, 'strain': 1.543, 'linkage': '1-2'}, '6': {'phi': -62.8... | {'MAN6-NAG9': {'2': {'phi': -69.53, 'psi': -77.49, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -83.43, 'psi': -70.14, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -84.56, 'psi': -69.73, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -86.03, 'psi': -100.13, 'strain': 1.543, 'linkage': '1-2'}, '6': {'phi': -62.8... | {'MAN6-NAG9': {'2': {'phi': -69.53, 'psi': -77.49, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -83.38, 'psi': -70.15, 'strain': -0.0, 'linkage': '1-2'}, '4': {'phi': -84.54, 'psi': -69.74, 'strain': 0.34, 'linkage': '1-2'}, '5': {'phi': -86.07, 'psi': -100.06, 'strain': 1.543, 'linkage': '1-2'}, '6': {'phi': -62.8... | null | 15 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G16552HD', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491935967', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491935967', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G16552HD', 'url': 'https://glytoucan.org/Structures/Glycans/G16552HD', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G16552HD', 'url': 'https://sandbox.... | 3,293.68 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 131 | Saccharide | HexNAc(6)Hex(7)dHex(2) % 2662.97238257 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--4b1D-GlcNAc,p--4b1D-Gal,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G02287BL', 'relationship': 'ancestor'};{'related_accession': 'G29545VG', 'relationship': 'ancestor'};{'related_accession': 'G84058QX', 'relationship': 'ancestor'};{'related_accession': 'G93663JV', 'relationship': 'ancestor'};{'related_accession': 'G02287BL', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00283/snfg.svg | ./torsion_data/GS00283_torsion_data.txt | {'Cluster 0': {'count': 10609, '3_2_phi_mean': -72.15, '3_2_psi_mean': 124.33, '4_3_phi_mean': -88.06, '4_3_psi_mean': -85.67, '7_3_phi_mean': -79.98, '7_3_psi_mean': 106.71, '5_4_phi_mean': -68.15, '5_4_psi_mean': -108.39, '6_4_phi_mean': -69.49, '6_4_psi_mean': 141.58, '8_7_phi_mean': -68.81, '8_7_psi_mean': -107.95,... | G17940ZL | GS00283 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-6]DGalpb1-4DGlcpa1-OH | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-6]DGalpb1-4DGlcp | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-6)]Gal(b1-4)Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,9,8/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-4-3-4-2/a4-b1_b3-c1_b6-g1_c3-d1_c4-e1_e2-f1_g3-h1_g4-i1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:a-lgal-HEX-1:5|6:d,6b:b-dgal-HEX-1:5,7b:a-lgal-HEX-1:5|6:d,8b:b-dglc-HEX-1:5,9s:n-acetyl,10b:a-lgal-HEX-1:5|6:d,11b:b-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:3o(4+1)6d,6:6o(2+1)7d,7:2o(6+1)8d,8:8d(2+1)9n,9:8o(3+1)10d,10:... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H]3NC(C)=O)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H](O[C@@H]4O[C@@... | null | 1,510.55 | {'motif': 'G70519XK', 'motif_label': 'Blood group H (type 2)'};{'motif': 'G00052MO', 'motif_label': 'Ley'};{'motif': 'G00052MO', 'motif_label': 'Lewis b'};{'motif': 'G00052MO', 'motif_label': 'Leb'};{'motif': 'G00052MO', 'motif_label': 'Blood group H (type 2)'} | Fuc(a1-3);Fuc(a1-2);Gal(b1-4) | {'Fuc': 3, 'Gal': 3, 'GlcNAc': 2, 'Glc': 1} | {'Hex': 4, 'HexNAc': 2, 'dHex': 3} | 24 | 26 | 43 | 11.85765 | {'Cluster 0': 35.36, 'Cluster 1': 26.73, 'Cluster 2': 13.64, 'Cluster 3': 12.38, 'Cluster 4': 11.9} | {'Cluster 0': 18.0682, 'Cluster 1': 16.9983, 'Cluster 2': 9.9623, 'Cluster 3': 7.9525, 'Cluster 4': 6.9193, 'Cluster 5': 5.7794, 'Cluster 6': 5.7694, 'Cluster 7': 5.0828, 'Cluster 8': 4.7129, 'Cluster 9': 3.0464, 'Cluster 10': 2.5664, 'Cluster 11': 2.5531, 'Cluster 12': 2.0265, 'Cluster 13': 1.9498, 'Cluster 14': 1.939... | {'2': 0.42979569947765167, '3': 0.5013541309183225, '4': 0.518086775089383, '5': 0.45788018976091893, '6': 0.4409501328301557, '7': 0.46127314352519916, '8': 0.44551092549959864} | {'0': [0, 5, 7, 16], '1': [12, 18], '2': [2, 6, 9, 14], '3': [1, 3, 8, 11, 13, 17, 19], '4': [4, 10, 15]} | {'explained_variance_ratio': [0.2845313130332172, 0.15933920435772672, 0.04834952790842733, 0.041587859770712166, 0.03492506692153041, 0.033582365006770386, 0.01826073048104009, 0.015277094740079699, 0.01392459477913803, 0.012779192352726156], 'cumulative_variance': [0.2845313130332172, 0.44387051739094396, 0.492220045... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-6]DGalpb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-6)]Gal(b1-4)Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G42075WT | WURCS=2.0/4,9,8/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-4-3-4-2/a4-b1_b3-c1_b6-g1_c3-d1_c4-e1_e2-f1_g3-h1_g4-i1 | LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-6]DGalpb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-6)]Gal(b1-4)Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G27014FJ | WURCS=2.0/4,9,8/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-4-3-4-2/a4-b1_b3-c1_b6-g1_c3-d1_c4-e1_e2-f1_g3-h1_g4-i1 | null | null | null | {'GAL8-FUC9': {'2': {'phi': -67.79, 'psi': 135.24, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -70.74, 'psi': 136.22, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -65.43, 'psi': 140.64, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -75.59, 'psi': 141.86, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -71.... | {'GAL8-FUC9': {'2': {'phi': -67.79, 'psi': 135.24, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -70.75, 'psi': 136.28, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -65.47, 'psi': 140.6, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -75.62, 'psi': 141.86, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -71.6... | {'GAL8-FUC9': {'2': {'phi': -67.79, 'psi': 135.24, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -70.74, 'psi': 136.22, 'strain': 0.426, 'linkage': '1-2'}, '4': {'phi': -65.43, 'psi': 140.64, 'strain': 0.394, 'linkage': '1-2'}, '5': {'phi': -75.59, 'psi': 141.86, 'strain': 0.496, 'linkage': '1-2'}, '6': {'phi': -71.... | {'taxon_id': '9258', 'taxon_label': 'Ornithorhynchus anatinus (platypus)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G17940ZL'}]};{'taxon_id': '9257', 'taxon_label': 'Ornithorhynchus', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G... | 9 | null | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Neo-lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G17940ZL', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G17940... | {'id': '491843948', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491843948', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '14167', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '2861', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+2861', 'database': 'Car... | 1,874.96 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 218 | Saccharide | HexNAc(2)Hex(4)dHex(3) % 1510.55433052 | freeEnd--?D-Glc--4b1D-Gal,p(--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--2a1L-Fuc,p)--6b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000019', 'name': 'Lewis y', 'synonym': 'Le^y; Ley', 'keywords': 'L... | {'related_accession': 'G08851AT', 'relationship': 'ancestor'};{'related_accession': 'G24357WI', 'relationship': 'ancestor'};{'related_accession': 'G78254ZM', 'relationship': 'ancestor'};{'related_accession': 'G90665OT', 'relationship': 'ancestor'};{'related_accession': 'G90665OT', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00284/snfg.svg | ./torsion_data/GS00284_torsion_data.txt | {'Cluster 0': {'count': 19876, '3_2_phi_mean': -79.61, '3_2_psi_mean': 50.15, '4_2_phi_mean': -77.41, '4_2_psi_mean': -126.56, '5_4_phi_mean': -71.03, '5_4_psi_mean': -113.55, '6_5_phi_mean': 75.13, '6_5_psi_mean': 83.2, '9_5_phi_mean': 72.48, '9_5_psi_mean': 137.3, '7_6_phi_mean': -79.78, '7_6_psi_mean': -33.45, '8_6_... | G29140EJ | GS00284 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-4-2-2-5/a4-b1_a6-l1_b4-c1_c3-d1_c6-i1_d2-e1_d4-h1_e3-f1_e4-g1_i2-j1_i6-k1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:a-dman-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@H](O)[C@@H]4O[C@... | null | 2,176.81 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Gal(b1-4);Fuc(a1-6);GlcNAc(b1-2);GlcNAc(b1-6);GlcNAc(b1-4) | {'GlcNAc': 6, 'Man': 3, 'Fuc': 2, 'Gal': 1} | {'Hex': 4, 'HexNAc': 6, 'dHex': 2} | 38 | 36 | 59 | 13.87553 | {'Cluster 0': 33.12, 'Cluster 1': 25.27, 'Cluster 2': 17.13, 'Cluster 3': 15.65, 'Cluster 4': 8.83} | {'Cluster 0': 23.8759, 'Cluster 1': 10.4506, 'Cluster 2': 8.8658, 'Cluster 3': 7.2859, 'Cluster 4': 6.516, 'Cluster 5': 6.1211, 'Cluster 6': 5.9527, 'Cluster 7': 4.1946, 'Cluster 8': 4.1663, 'Cluster 9': 4.1546, 'Cluster 10': 3.2197, 'Cluster 11': 2.4181, 'Cluster 12': 1.5882, 'Cluster 13': 1.4265, 'Cluster 14': 1.3499... | {'2': 0.31328651162145216, '3': 0.36361871028669523, '4': 0.2811570348933665, '5': 0.2832783806436498, '6': 0.30074696450064925, '7': 0.2808976844713288, '8': 0.2682115308394923} | {'0': [0, 6, 7, 13, 17, 18, 20, 25], '1': [4, 21], '2': [3, 10, 15, 23, 29], '3': [2, 9, 14, 19, 28], '4': [1, 5, 8, 11, 12, 16, 22, 24, 26, 27]} | {'explained_variance_ratio': [0.13167603041298254, 0.08632950807789856, 0.07176325168122097, 0.06796323600376272, 0.05306698854864959, 0.042705178313913475, 0.03655522970311594, 0.03160295088141575, 0.02720554295855481, 0.02591803058227579], 'cumulative_variance': [0.13167603041298254, 0.2180055384908811, 0.28976879017... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G81880UQ | WURCS=2.0/6,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-4-2-2-5/a4-b1_a6-l1_b4-c1_c3-d1_c6-i1_d2-e1_d4-h1_e3-f1_e4-g1_i2-j1_i6-k1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G90768FC | WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-1-3-1-1-4/a4-b1_a6-l1_b4-c1_c3-d1_c6-i1_d2-e1_d4-h1_e3-f1_e4-g1_i2-j1_i6-k1 | null | null | Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG8': {'2': {'phi': -90.27, 'psi': -75.63, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -132.2, 'psi': -121.35, 'strain': 2.783, 'linkage': '1-2'}, '4': {'phi': -74.7, 'psi': -72.01, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -71.37, 'psi': -73.72, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -83.... | {'MAN6-NAG8': {'2': {'phi': -90.27, 'psi': -75.63, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -132.18, 'psi': -121.35, 'strain': 2.783, 'linkage': '1-2'}, '4': {'phi': -74.66, 'psi': -71.99, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -71.36, 'psi': -73.73, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -8... | {'MAN6-NAG8': {'2': {'phi': -90.27, 'psi': -75.63, 'strain': 0.326, 'linkage': '1-2'}, '3': {'phi': -132.2, 'psi': -121.35, 'strain': 2.783, 'linkage': '1-2'}, '4': {'phi': -74.7, 'psi': -72.01, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -71.37, 'psi': -73.72, 'strain': 0.143, 'linkage': '1-2'}, '6': {'phi': -83.... | null | 12 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G29140EJ', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491847505', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491847505', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G29140EJ', 'url': 'https://glytoucan.org/Structures/Glycans/G29140EJ', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G29140EJ', 'url': 'https://sandbox.... | 2,681.38 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 164 | Saccharide | HexNAc(6)Hex(4)dHex(2) % 2176.81391207 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p)--6b1D-GlcNAc,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G20698EO', 'relationship': 'ancestor'};{'related_accession': 'G23720EZ', 'relationship': 'ancestor'};{'related_accession': 'G72725FT', 'relationship': 'ancestor'};{'related_accession': 'G87389XI', 'relationship': 'ancestor'};{'related_accession': 'G20698EO', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00285/snfg.svg | ./torsion_data/GS00285_torsion_data.txt | {'Cluster 0': {'count': 20164, '3_2_phi_mean': -72.73, '3_2_psi_mean': 113.01, '4_3_phi_mean': -80.19, '4_3_psi_mean': -49.5, '5_3_phi_mean': -79.94, '5_3_psi_mean': 105.27, '6_5_phi_mean': -68.17, '6_5_psi_mean': -107.87, '7_5_phi_mean': -69.18, '7_5_psi_mean': 141.72, '3_2_phi_std': 18.02, '3_2_psi_std': 34.66, '4_3_... | G79501FW | GS00285 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3[DGlcpNAcb1-6]DGalpb1-4DGlcpa1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3[DGlcpNAcb1-6]DGalpb1-4DGlcp | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)[GlcNAc(b1-6)]Gal(b1-4)Glc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)[β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,6,5/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3/a4-b1_b3-c1_b6-f1_c3-d1_c4-e1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:a-lgal-HEX-1:5|6:d,6b:b-dgal-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:3o(4+1)6d,6:2o(6+1)7d,7:7d(2+1)8n, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3NC(C)=O)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO | null | 1,056.39 | {'motif': 'G01187XC', 'motif_label': 'Lex'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Fuc(a1-3);Gal(b1-4);GlcNAc(b1-6) | {'Gal': 2, 'GlcNAc': 2, 'Fuc': 1, 'Glc': 1} | {'Hex': 3, 'HexNAc': 2, 'dHex': 1} | 17 | 19 | 30 | 10.937976 | {'Cluster 0': 33.6, 'Cluster 1': 21.25, 'Cluster 2': 16.89, 'Cluster 3': 15.19, 'Cluster 4': 13.07} | {'Cluster 0': 37.9429, 'Cluster 1': 13.302, 'Cluster 2': 11.2589, 'Cluster 3': 11.0606, 'Cluster 4': 8.5625, 'Cluster 5': 5.7078, 'Cluster 6': 4.4346, 'Cluster 7': 1.9615, 'Cluster 8': 1.2149, 'Cluster 9': 1.1599, 'Cluster 10': 1.1166, 'Cluster 11': 0.8616, 'Cluster 12': 0.8199, 'Cluster 13': 0.4366, 'Cluster 14': 0.08... | {'2': 0.5679627302347763, '3': 0.4691775467271234, '4': 0.46014727500227987, '5': 0.3933708404620867, '6': 0.4083930015059425, '7': 0.381739135182115, '8': 0.3534911878535833} | {'0': [2], '1': [3, 5], '2': [10, 15], '3': [0, 4, 6, 8, 9, 11, 13, 14, 16], '4': [1, 7, 12]} | {'explained_variance_ratio': [0.23030061232011945, 0.15374195740138538, 0.07338164506050454, 0.055344679678362006, 0.03481591604619338, 0.03187697776095559, 0.027445426354916286, 0.023356612325662367, 0.016707967612606497, 0.015564433623569834], 'cumulative_variance': [0.23030061232011945, 0.38404256972150486, 0.457424... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3[DGlcpNAcb1-6]DGalpb1-4DGlcpa1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)[GlcNAc(b1-6)]Gal(b1-4)Glc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)[β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G42649FB | WURCS=2.0/4,6,5/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3/a4-b1_b3-c1_b6-f1_c3-d1_c4-e1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3[DGlcpNAcb1-6]DGalpb1-4DGlcpb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)[GlcNAc(b1-6)]Gal(b1-4)Glc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)[β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G70889AX | WURCS=2.0/4,6,5/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3/a4-b1_b3-c1_b6-f1_c3-d1_c4-e1 | null | null | null | {'GAL3-NAG5': {'2': {'phi': -86.38, 'psi': -150.47, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -78.13, 'psi': -126.36, 'strain': 0.86, 'linkage': '1-3'}, '4': {'phi': -78.38, 'psi': -105.2, 'strain': 0.136, 'linkage': '1-3'}, '5': {'phi': -59.65, 'psi': -100.13, 'strain': 1.046, 'linkage': '1-3'}, '6': {'phi': -9... | {'GAL3-NAG5': {'2': {'phi': -86.38, 'psi': -150.47, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -78.22, 'psi': -126.33, 'strain': 0.86, 'linkage': '1-3'}, '4': {'phi': -78.34, 'psi': -105.18, 'strain': 0.136, 'linkage': '1-3'}, '5': {'phi': -59.59, 'psi': -100.19, 'strain': 1.046, 'linkage': '1-3'}, '6': {'phi': -... | {'GAL3-NAG5': {'2': {'phi': -86.38, 'psi': -150.47, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -78.13, 'psi': -126.36, 'strain': 0.86, 'linkage': '1-3'}, '4': {'phi': -78.38, 'psi': -105.2, 'strain': 0.136, 'linkage': '1-3'}, '5': {'phi': -59.65, 'psi': -100.13, 'strain': 1.046, 'linkage': '1-3'}, '6': {'phi': -9... | null | 6 | null | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Neo-lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G79501FW', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G79501... | {'id': '491916358', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491916358', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '13880', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '38492', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+38492', 'database': 'C... | 1,322.68 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 328 | Saccharide | HexNAc(2)Hex(3)dHex(1) % 1056.38568928 | freeEnd--?D-Glc--4b1D-Gal,p(--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--6b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G20956ZV', 'relationship': 'ancestor'};{'related_accession': 'G63830BN', 'relationship': 'ancestor'};{'related_accession': 'G71001XO', 'relationship': 'ancestor'};{'related_accession': 'G92275SC', 'relationship': 'ancestor'};{'related_accession': 'G20956ZV', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00286/snfg.svg | ./torsion_data/GS00286_torsion_data.txt | {'Cluster 0': {'count': 12971, '3_2_phi_mean': -79.43, '3_2_psi_mean': -113.17, '4_3_phi_mean': -67.67, '4_3_psi_mean': -108.18, '8_3_phi_mean': -69.29, '8_3_psi_mean': 141.28, '5_4_phi_mean': -80.31, '5_4_psi_mean': 140.69, '6_5_phi_mean': -67.83, '6_5_psi_mean': -108.08, '7_5_phi_mean': -69.49, '7_5_psi_mean': 142.14... | G86670TP | GS00286 | LFucpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-3DGlcpa1-OH | LFucpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-3DGlcp | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Glc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-D-Glc | WURCS=2.0/4,7,6/[u2122h][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-3-4/a3-b1_b3-c1_b4-d1_d3-e1_e3-f1_e4-g1 | RES,1b:b-dglc-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:a-lgal-HEX-1:5|6:d,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:a-lgal-HEX-1:5|6:d,9b:b-dgal-HEX-1:5,LIN,1:1o(3+1)2d,2:2d(2+1)3n,3:2o(3+1)4d,4:2o(4+1)5d,5:5o(3+1)6d,6:6d(2+1)7n,7:6o(3+1)8d,8:6o(4+1)9d, | O1C(O)[C@H](O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O)[C@H](O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H]4NC(C)=O)[C@H]3O)[C@H](O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H]2NC(C)=O)[C@H](O)[C@H]1CO | null | 1,202.44 | {'motif': 'G79535HZ', 'motif_label': 'Lex-Lex'} | Fuc(a1-3);Gal(b1-4) | {'Fuc': 2, 'Gal': 2, 'GlcNAc': 2, 'Glc': 1} | {'Hex': 3, 'HexNAc': 2, 'dHex': 2} | 19 | 21 | 34 | 11.512206 | {'Cluster 0': 43.23, 'Cluster 1': 23.45, 'Cluster 2': 18.61, 'Cluster 3': 12.13, 'Cluster 4': 2.58} | {'Cluster 0': 38.4162, 'Cluster 1': 15.4585, 'Cluster 2': 14.8918, 'Cluster 3': 10.6656, 'Cluster 4': 5.4361, 'Cluster 5': 4.3196, 'Cluster 6': 2.4464, 'Cluster 7': 1.7832, 'Cluster 8': 1.6365, 'Cluster 9': 1.5032, 'Cluster 10': 1.1332, 'Cluster 11': 1.1199, 'Cluster 12': 0.4733, 'Cluster 13': 0.2666, 'Cluster 14': 0.2... | {'2': 0.6016703469904138, '3': 0.46194161553468677, '4': 0.36753753613673934, '5': 0.328623530051001, '6': 0.31543135577583725, '7': 0.30451995189274533, '8': 0.289435293987729} | {'0': [18], '1': [4, 5, 12, 13, 15], '2': [0, 6, 8, 14, 16], '3': [7, 9, 17], '4': [1, 2, 3, 10, 11]} | {'explained_variance_ratio': [0.22347342027618533, 0.12223196314584758, 0.05524994249082556, 0.0468234036484066, 0.038646752790358674, 0.03391549169631514, 0.02672364727099534, 0.025943921362103668, 0.020463672147731992, 0.017917630694163304], 'cumulative_variance': [0.22347342027618533, 0.34570538342203294, 0.40095532... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-3DGlcpa1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Glc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-α-D-Glcp-(1→ | G58147NQ | WURCS=2.0/4,7,6/[a2122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-3-4/a3-b1_b3-c1_b4-d1_d3-e1_e3-f1_e4-g1 | LFucpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-3DGlcpb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Glc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Glcp-(1→ | G87743XO | WURCS=2.0/4,7,6/[a2122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-3-4/a3-b1_b3-c1_b4-d1_d3-e1_e3-f1_e4-g1 | null | null | null | {'GLC2-NAG3': {'2': {'phi': -86.8, 'psi': -142.45, 'strain': 0.737, 'linkage': '1-3'}, '3': {'phi': -57.2, 'psi': -149.53, 'strain': 1.98, 'linkage': '1-3'}, '4': {'phi': -70.05, 'psi': -125.9, 'strain': 0.86, 'linkage': '1-3'}, '5': {'phi': -68.66, 'psi': -120.56, 'strain': 0.882, 'linkage': '1-3'}, '6': {'phi': -77.4... | {'GLC2-NAG3': {'2': {'phi': -86.8, 'psi': -142.45, 'strain': 0.737, 'linkage': '1-3'}, '3': {'phi': -57.22, 'psi': -149.53, 'strain': 1.98, 'linkage': '1-3'}, '4': {'phi': -70.07, 'psi': -125.9, 'strain': 0.86, 'linkage': '1-3'}, '5': {'phi': -68.73, 'psi': -120.54, 'strain': 0.882, 'linkage': '1-3'}, '6': {'phi': -77.... | {'GLC2-NAG3': {'2': {'phi': -86.8, 'psi': -142.45, 'strain': 0.737, 'linkage': '1-3'}, '3': {'phi': -57.2, 'psi': -149.53, 'strain': 1.98, 'linkage': '1-3'}, '4': {'phi': -70.05, 'psi': -125.9, 'strain': 0.86, 'linkage': '1-3'}, '5': {'phi': -68.66, 'psi': -120.56, 'strain': 0.882, 'linkage': '1-3'}, '6': {'phi': -77.4... | null | 7 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G67026KG', 'url': 'https://www.glygen.org/glycan/G67026KG'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G86670TP', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G86670... | {'id': '491966910', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491966910', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G86670TP', 'url': 'https://glytoucan.org/Structures/Glycans/G86670TP', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G86670TP', 'url': 'https://sandbox.... | 1,496.77 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 281 | Saccharide | HexNAc(2)Hex(3)dHex(2) % 1202.44359815 | freeEnd--?D-Glc--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis... | {'related_accession': 'G21726WW', 'relationship': 'ancestor'};{'related_accession': 'G46910OC', 'relationship': 'ancestor'};{'related_accession': 'G52380FC', 'relationship': 'ancestor'};{'related_accession': 'G79743GA', 'relationship': 'ancestor'};{'related_accession': 'G21726WW', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00287/snfg.svg | ./torsion_data/GS00287_torsion_data.txt | {'Cluster 0': {'count': 16797, '3_2_phi_mean': -78.25, '3_2_psi_mean': -129.33, '4_3_phi_mean': -73.56, '4_3_psi_mean': -120.84, '5_4_phi_mean': 72.7, '5_4_psi_mean': 115.01, '8_4_phi_mean': -57.02, '8_4_psi_mean': -110.39, '9_4_phi_mean': 77.24, '9_4_psi_mean': 105.33, '6_5_phi_mean': -87.47, '6_5_psi_mean': -30.25, '... | G18512IC | GS00287 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-2-4-2-2/a4-b1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_j2-k1_j6-l1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:a-dman-HEX-1:5,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:b-dglc-HEX-1:5,19s:n-acetyl,LI... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@... | null | 2,233.84 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Gal(b1-4);GlcNAc(b1-2);GlcNAc(b1-6);GlcNAc(b1-4) | {'GlcNAc': 7, 'Man': 3, 'Fuc': 1, 'Gal': 1} | {'Hex': 4, 'HexNAc': 7, 'dHex': 1} | 40 | 37 | 60 | 13.219055 | {'Cluster 0': 41.99, 'Cluster 1': 22.21, 'Cluster 2': 17.99, 'Cluster 3': 13.08, 'Cluster 4': 4.74} | {'Cluster 0': 45.393, 'Cluster 1': 9.544, 'Cluster 2': 9.0791, 'Cluster 3': 6.2419, 'Cluster 4': 4.7495, 'Cluster 5': 4.3496, 'Cluster 6': 3.5321, 'Cluster 7': 2.2648, 'Cluster 8': 2.1298, 'Cluster 9': 2.0948, 'Cluster 10': 2.0048, 'Cluster 11': 1.4674, 'Cluster 12': 1.2524, 'Cluster 13': 1.1524, 'Cluster 14': 0.9324, ... | {'2': 0.398533990233167, '3': 0.4447936563479858, '4': 0.4526448023835967, '5': 0.28253565724084256, '6': 0.2501935362271961, '7': 0.28999872406556687, '8': 0.3011128949588938} | {'0': [4, 13, 22], '1': [5, 8, 9, 12, 14, 20, 25], '2': [1, 2, 3, 7, 10, 11, 15, 17, 21], '3': [6, 16, 18, 23, 24], '4': [0, 19]} | {'explained_variance_ratio': [0.1339468508091739, 0.11177613509022487, 0.06341715939433287, 0.05555300135427493, 0.04920211868683296, 0.038626368468936634, 0.03187913540754322, 0.025705872111226463, 0.024412176444562176, 0.022382297758711922], 'cumulative_variance': [0.1339468508091739, 0.24572298589939878, 0.309140145... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G85207ZD | WURCS=2.0/6,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-2-4-2-2/a4-b1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_j2-k1_j6-l1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G87558RR | WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-1-1-3-1-1/a4-b1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_j2-k1_j6-l1 | null | null | N-Glycan | {'MAN5-NAG7': {'2': {'phi': -99.85, 'psi': -132.57, 'strain': 2.954, 'linkage': '1-2'}, '3': {'phi': -98.98, 'psi': -56.37, 'strain': 1.667, 'linkage': '1-2'}, '4': {'phi': -57.34, 'psi': -69.85, 'strain': 1.644, 'linkage': '1-2'}, '5': {'phi': -92.88, 'psi': -82.58, 'strain': 0.71, 'linkage': '1-2'}, '6': {'phi': -99.... | {'MAN5-NAG7': {'2': {'phi': -99.85, 'psi': -132.57, 'strain': 2.954, 'linkage': '1-2'}, '3': {'phi': -99.01, 'psi': -56.35, 'strain': 1.667, 'linkage': '1-2'}, '4': {'phi': -57.33, 'psi': -69.85, 'strain': 1.644, 'linkage': '1-2'}, '5': {'phi': -92.84, 'psi': -82.65, 'strain': 0.71, 'linkage': '1-2'}, '6': {'phi': -99.... | {'MAN5-NAG7': {'2': {'phi': -99.85, 'psi': -132.57, 'strain': 2.954, 'linkage': '1-2'}, '3': {'phi': -98.98, 'psi': -56.37, 'strain': 1.667, 'linkage': '1-2'}, '4': {'phi': -57.34, 'psi': -69.85, 'strain': 1.644, 'linkage': '1-2'}, '5': {'phi': -92.88, 'psi': -82.58, 'strain': 0.71, 'linkage': '1-2'}, '6': {'phi': -99.... | null | 12 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Bisected'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G18512IC', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491936840', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491936840', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G18512IC', 'url': 'https://glytoucan.org/Structures/Glycans/G18512IC', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G18512IC', 'url': 'https://sandbox.... | 2,752.41 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 164 | Saccharide | HexNAc(7)Hex(4)dHex(1) % 2233.83537581 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p(--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--4b1D-GlcNAc,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p)--6b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G00960PA', 'relationship': 'ancestor'};{'related_accession': 'G06853GH', 'relationship': 'ancestor'};{'related_accession': 'G29256WH', 'relationship': 'ancestor'};{'related_accession': 'G78787DI', 'relationship': 'ancestor'};{'related_accession': 'G06853GH', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00288/snfg.svg | ./torsion_data/GS00288_torsion_data.txt | {'Cluster 0': {'count': 15561, '3_2_phi_mean': -77.82, '3_2_psi_mean': -129.82, '4_3_phi_mean': -84.92, '4_3_psi_mean': -119.52, '5_4_phi_mean': 82.81, '5_4_psi_mean': 88.23, '9_4_phi_mean': 71.44, '9_4_psi_mean': 131.21, '6_5_phi_mean': -84.3, '6_5_psi_mean': -75.21, '7_6_phi_mean': -67.87, '7_6_psi_mean': -107.3, '8_... | G90267TS | GS00288 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_i3-j1_i4-k1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-dman-HEX-1:5,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:a-lgal-HEX-1:5|6:d,15b:b-dgal-HEX-1:5,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](... | null | 1,932.71 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Gal(b1-4) | {'GlcNAc': 4, 'Man': 3, 'Fuc': 2, 'Gal': 2} | {'Hex': 5, 'HexNAc': 4, 'dHex': 2} | 33 | 33 | 54 | 13.425884 | {'Cluster 0': 38.9, 'Cluster 1': 28.64, 'Cluster 2': 14.06, 'Cluster 3': 12.08, 'Cluster 4': 6.32} | {'Cluster 0': 22.9002, 'Cluster 1': 18.1007, 'Cluster 2': 8.8891, 'Cluster 3': 8.2842, 'Cluster 4': 7.5842, 'Cluster 5': 6.8618, 'Cluster 6': 5.7894, 'Cluster 7': 4.572, 'Cluster 8': 2.7997, 'Cluster 9': 2.2573, 'Cluster 10': 1.8023, 'Cluster 11': 1.7098, 'Cluster 12': 1.6298, 'Cluster 13': 0.9874, 'Cluster 14': 0.9649... | {'2': 0.36316724295940306, '3': 0.33071570356762414, '4': 0.34206152498586956, '5': 0.30271640497708774, '6': 0.3173312798168422, '7': 0.31449201902302987, '8': 0.3153720734221285} | {'0': [5, 6, 15, 17, 22, 26], '1': [0, 10, 19], '2': [7, 8, 16, 24], '3': [1, 3, 12, 21, 27], '4': [2, 4, 9, 11, 13, 14, 18, 20, 23, 25]} | {'explained_variance_ratio': [0.1784964937866106, 0.11696970638457253, 0.1028012320134837, 0.07912210343565751, 0.0480773556611541, 0.04287689031930995, 0.03152758091040294, 0.02995085631751418, 0.02326950586267776, 0.015810362307556565], 'cumulative_variance': [0.1784964937866106, 0.29546620017118314, 0.39826743218466... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G90685OB | WURCS=2.0/6,11,10/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_i3-j1_i4-k1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G25407RZ | WURCS=2.0/5,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-3-1-4-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_i3-j1_i4-k1 | null | null | Biantennary N-Glycan;Complex N-Glycan;N-Glycan | {'MAN5-NAG6': {'2': {'phi': -89.08, 'psi': -69.81, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -75.33, 'psi': -69.19, 'strain': 0.515, 'linkage': '1-2'}, '4': {'phi': -68.12, 'psi': -66.19, 'strain': 0.982, 'linkage': '1-2'}, '5': {'phi': -85.39, 'psi': -72.86, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -74.54... | {'MAN5-NAG6': {'2': {'phi': -89.08, 'psi': -69.81, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -75.37, 'psi': -69.15, 'strain': 0.515, 'linkage': '1-2'}, '4': {'phi': -68.05, 'psi': -66.23, 'strain': 0.982, 'linkage': '1-2'}, '5': {'phi': -85.36, 'psi': -72.89, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -74.54... | {'MAN5-NAG6': {'2': {'phi': -89.08, 'psi': -69.81, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -75.33, 'psi': -69.19, 'strain': 0.515, 'linkage': '1-2'}, '4': {'phi': -68.12, 'psi': -66.19, 'strain': 0.982, 'linkage': '1-2'}, '5': {'phi': -85.39, 'psi': -72.86, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -74.54... | null | 11 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G25407RZ', 'url': 'https://www.glygen.org/glycan/G25407RZ'}, {'database': 'Subsumption', 'id': 'G73683LQ', 'url': 'https://www.glygen.org/glycan/G73683LQ'}], 'common_name': 'Human', 'glygen_name... | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Biantennary'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G90267TS', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491867048', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491867048', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G90267TS', 'url': 'https://glytoucan.org/Structures/Glycans/G90267TS', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G90267TS', 'url': 'https://sandbox.... | 2,395.22 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 179 | Saccharide | HexNAc(4)Hex(5)dHex(2) % 1932.70799036 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--6a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G60923RB', 'relationship': 'ancestor'};{'related_accession': 'G70619PT', 'relationship': 'ancestor'};{'related_accession': 'G81910EG', 'relationship': 'ancestor'};{'related_accession': 'G89155GZ', 'relationship': 'ancestor'};{'related_accession': 'G60923RB', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00289/snfg.svg | ./torsion_data/GS00289_torsion_data.txt | {'Cluster 0': {'count': 13219, '3_2_phi_mean': -80.93, '3_2_psi_mean': 77.29, '4_2_phi_mean': -75.53, '4_2_psi_mean': -124.93, '5_4_phi_mean': -104.1, '5_4_psi_mean': -130.76, '6_5_phi_mean': 80.18, '6_5_psi_mean': 87.47, '10_5_phi_mean': 70.64, '10_5_psi_mean': 131.0, '7_6_phi_mean': -83.59, '7_6_psi_mean': -75.51, '8... | G53889SN | GS00289 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-4-2-5-6-5/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_i3-j1_i4-k1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:a-dman-HEX-1:5,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:a-lgal-HEX-1:5|6:d,15b:b-dgal-HEX-1:5,16b:a-lgal-HEX-1:5|6:d,LIN,1:1d(2+1)2n,2:1o(4+1)3d,3:3d(... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](... | FA2F2G2 | 2,078.77 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Gal(b1-4);Fuc(a1-6) | {'GlcNAc': 4, 'Fuc': 3, 'Man': 3, 'Gal': 2} | {'Hex': 5, 'HexNAc': 4, 'dHex': 3} | 35 | 35 | 58 | 13.642324 | {'Cluster 0': 33.04, 'Cluster 1': 24.58, 'Cluster 2': 24.27, 'Cluster 3': 15.25, 'Cluster 4': 2.87} | {'Cluster 0': 17.6857, 'Cluster 1': 15.8634, 'Cluster 2': 15.0935, 'Cluster 3': 11.0914, 'Cluster 4': 8.6641, 'Cluster 5': 7.7167, 'Cluster 6': 3.0972, 'Cluster 7': 2.8022, 'Cluster 8': 2.1623, 'Cluster 9': 2.0798, 'Cluster 10': 1.9023, 'Cluster 11': 1.5748, 'Cluster 12': 1.5573, 'Cluster 13': 1.1924, 'Cluster 14': 1.1... | {'2': 0.4566470334617796, '3': 0.30166671229035025, '4': 0.29324261783281075, '5': 0.2926383912679475, '6': 0.23030462415480663, '7': 0.2340167867790212, '8': 0.1636297059152433} | {'0': [0, 4, 12, 19, 24], '1': [3, 8, 11, 13, 23], '2': [2, 5, 6, 7, 9, 14, 16, 18, 20, 22, 26], '3': [1, 15, 17, 21, 27], '4': [10, 25, 28]} | {'explained_variance_ratio': [0.1948078638768494, 0.10305505327019764, 0.08683356163571501, 0.05787310200276331, 0.04973911814878215, 0.040080804292206396, 0.039121309917207574, 0.03350216058281753, 0.023643975813082873, 0.0180900775093941], 'cumulative_variance': [0.1948078638768494, 0.29786291714704705, 0.38469647878... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G13985ZF | WURCS=2.0/6,12,11/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-4-2-5-6-5/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_i3-j1_i4-k1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-3[LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G52880ZN | WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-3-1-4-5-4/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_i3-j1_i4-k1 | FA2F2G2 | null | Biantennary N-Glycan;Complex N-Glycan;Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG7': {'2': {'phi': -86.5, 'psi': -64.71, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -83.23, 'psi': -109.47, 'strain': 1.543, 'linkage': '1-2'}, '4': {'phi': -73.16, 'psi': -70.1, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -80.94, 'psi': -72.65, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -92.2, ... | {'MAN6-NAG7': {'2': {'phi': -86.5, 'psi': -64.71, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -83.27, 'psi': -109.42, 'strain': 1.543, 'linkage': '1-2'}, '4': {'phi': -73.12, 'psi': -70.12, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -80.91, 'psi': -72.62, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -92.2,... | {'MAN6-NAG7': {'2': {'phi': -86.5, 'psi': -64.71, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -83.23, 'psi': -109.47, 'strain': 1.543, 'linkage': '1-2'}, '4': {'phi': -73.16, 'psi': -70.1, 'strain': 0.143, 'linkage': '1-2'}, '5': {'phi': -80.94, 'psi': -72.65, 'strain': -0.0, 'linkage': '1-2'}, '6': {'phi': -92.2, ... | {'taxon_id': '3052731', 'taxon_label': 'Respirovirus muris', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G53889SN'}]} | 12 | {'taxid': 9031, 'name': 'Gallus gallus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G41821MR', 'url': 'https://www.glygen.org/glycan/G41821MR'}], 'common_name': 'Chicken', 'glygen_name': 'Chicken', 'reference_species': 'Gallus gallus [9031]'};{'taxid': 10029, 'name': 'Cricetul... | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Biantennary'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G53889SN', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491855452', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491855452', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '16243', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '2015', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+2015', 'database': 'Car... | 2,569.31 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 164 | Saccharide | HexNAc(4)Hex(5)dHex(3) % 2078.76589923 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--6a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G04657PL', 'relationship': 'ancestor'};{'related_accession': 'G72191MQ', 'relationship': 'ancestor'};{'related_accession': 'G82593BX', 'relationship': 'ancestor'};{'related_accession': 'G87051GH', 'relationship': 'ancestor'};{'related_accession': 'G87051GH', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00290/snfg.svg | ./torsion_data/GS00290_torsion_data.txt | {'Cluster 0': {'count': 11565, '3_2_phi_mean': -74.3, '3_2_psi_mean': 112.34, '4_3_phi_mean': -80.88, '4_3_psi_mean': 83.45, '5_4_phi_mean': -69.21, '5_4_psi_mean': -100.21, '6_4_phi_mean': -70.16, '6_4_psi_mean': 133.37, '3_2_phi_std': 13.83, '3_2_psi_std': 31.27, '4_3_phi_std': 13.9, '4_3_psi_std': 15.64, '5_4_phi_st... | G21067JW | GS00290 | DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcp | Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc | β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,5,4/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_c4-e1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:a-lgal-HEX-1:5|6:d,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:3o(4+1)6d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO | null | 853.31 | {'motif': 'G00047MO', 'motif_label': 'Lea'};{'motif': 'G00056MO', 'motif_label': 'Type 1 LN'};{'motif': 'G00047MO', 'motif_label': 'Lewis a'} | Gal(b1-3);Fuc(a1-4) | {'Gal': 2, 'Fuc': 1, 'GlcNAc': 1, 'Glc': 1} | {'Hex': 3, 'HexNAc': 1, 'dHex': 1} | 13 | 16 | 25 | 9.73813 | {'Cluster 0': 38.55, 'Cluster 1': 30.18, 'Cluster 2': 21.87, 'Cluster 3': 8.69, 'Cluster 4': 0.72} | {'Cluster 0': 33.2033, 'Cluster 1': 32.4234, 'Cluster 2': 11.5922, 'Cluster 3': 9.1591, 'Cluster 4': 7.4293, 'Cluster 5': 3.353, 'Cluster 6': 1.2532, 'Cluster 7': 0.49, 'Cluster 8': 0.3766, 'Cluster 9': 0.2966, 'Cluster 10': 0.2133, 'Cluster 11': 0.1467, 'Cluster 12': 0.0633} | {'2': 0.6795971287858523, '3': 0.5062862095815109, '4': 0.519865617951332, '5': 0.46654455899177316, '6': 0.3904734168911133, '7': 0.30677045794991553, '8': 0.33202967611117123} | {'0': [2, 4, 5, 6, 8, 11], '1': [0], '2': [3, 10], '3': [1, 12], '4': [7, 9]} | {'explained_variance_ratio': [0.3424619588837739, 0.09653053452984643, 0.041216790135749894, 0.03780623443543039, 0.031642718014046285, 0.027853928906148448, 0.026680290306986394, 0.0214922918913705, 0.018376556073155508, 0.01717985083549667], 'cumulative_variance': [0.3424619588837739, 0.43899249341362034, 0.480209283... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(a1- | β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G19144GN | WURCS=2.0/4,5,4/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_c4-e1 | DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcpb1-OH | Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(b1- | β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G26123AX | WURCS=2.0/4,5,4/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_c4-e1 | null | null | null | {'GAL3-NAG4': {'2': {'phi': -81.44, 'psi': -157.29, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -76.75, 'psi': -84.07, 'strain': 0.702, 'linkage': '1-3'}, '4': {'phi': -76.69, 'psi': -86.23, 'strain': 0.702, 'linkage': '1-3'}, '5': {'phi': -62.15, 'psi': -125.93, 'strain': 0.882, 'linkage': '1-3'}, '6': {'phi': -1... | {'GAL3-NAG4': {'2': {'phi': -81.44, 'psi': -157.29, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -76.75, 'psi': -84.09, 'strain': 0.702, 'linkage': '1-3'}, '4': {'phi': -76.74, 'psi': -86.23, 'strain': 0.702, 'linkage': '1-3'}, '5': {'phi': -62.12, 'psi': -125.92, 'strain': 0.882, 'linkage': '1-3'}, '6': {'phi': -1... | {'GAL3-NAG4': {'2': {'phi': -81.44, 'psi': -157.29, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -76.75, 'psi': -84.07, 'strain': 0.702, 'linkage': '1-3'}, '4': {'phi': -76.69, 'psi': -86.23, 'strain': 0.702, 'linkage': '1-3'}, '5': {'phi': -62.15, 'psi': -125.93, 'strain': 0.882, 'linkage': '1-3'}, '6': {'phi': -1... | {'taxon_id': '9925', 'taxon_label': 'Capra hircus (goat)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G21067JW'}]};{'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G21067JW'}]}... | 5 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G21067JW', 'url': 'https://glycosmos.org/glycans/show/G21067JW'}, {'database': 'Subsumption', 'id': 'G26123AX', 'url': 'https://www.glygen.org/glycan/G26123AX'}], 'common_name': 'Human', 'glygen_name': '... | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G21067JW', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G21067... | {'id': '491844862', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491844862', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1223', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '3206', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '10847', 'u... | 1,077.56 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 393 | Saccharide | HexNAc(1)Hex(3)dHex(1) % 853.306316675 | freeEnd--?D-Glc--4b1D-Gal,p--3b1D-GlcNAc,p(--3b1D-Gal,p)--4a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000020', 'name': 'Lewis a', 'synonym': 'Le^a; Lea', 'keywords': 'Lewis a'} | {'related_accession': 'G01271OC', 'relationship': 'ancestor'};{'related_accession': 'G04203QS', 'relationship': 'ancestor'};{'related_accession': 'G14307WQ', 'relationship': 'ancestor'};{'related_accession': 'G40911RN', 'relationship': 'ancestor'};{'related_accession': 'G48532GF', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00291/snfg.svg | ./torsion_data/GS00291_torsion_data.txt | {'Cluster 0': {'count': 27529, '3_2_phi_mean': -76.11, '3_2_psi_mean': -38.24, '8_2_phi_mean': -75.96, '8_2_psi_mean': -122.02, '4_3_phi_mean': -75.13, '4_3_psi_mean': -115.27, '5_4_phi_mean': -78.3, '5_4_psi_mean': 104.6, '6_5_phi_mean': -77.81, '6_5_psi_mean': -106.45, '3_2_phi_std': 24.32, '3_2_psi_std': 141.87, '8_... | G25499LZ | GS00291 | DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DGalpNAca1-OH | DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DGalpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)]GalNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/4,8,7/[u2112h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-4-2-3/a3-b1_a6-d1_b3-c2_d4-e1_e3-f1_f4-g1_g3-h2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-acetyl,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:b-dgal-HEX-1:5,9b:b-dglc-HEX-1:5,10s:n-acetyl,11b:b-dgal-HEX-1:5,12b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,13s:n-acetyl,LIN,1:1d(2+1)2n,2:1o(3+1)3d,3:3o(3+2)4d,4:4d(5+1)5n,5:1o(6+1)6d,6:6d... | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O[C@]6(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H]... | null | 1,695.6 | {'motif': 'G00034MO', 'motif_label': 'O-Glycan core 2 fuzzy'};{'motif': 'G00058MO', 'motif_label': "I' antigen"};{'motif': 'G00058MO', 'motif_label': 'Type 2 LN2'};{'motif': 'G00065MO', 'motif_label': 'Polysialic acid'} | Neu5Ac(a2-3) | {'Gal': 3, 'Neu5Ac': 2, 'GlcNAc': 2, 'GalNAc': 1} | {'Hex': 3, 'HexNAc': 3, 'Neu5Ac': 2} | 33 | 30 | 47 | 13.441686 | {'Cluster 0': 34.41, 'Cluster 1': 34.1, 'Cluster 2': 19.23, 'Cluster 3': 9.12, 'Cluster 4': 3.14} | {'Cluster 0': 20.6604, 'Cluster 1': 17.0845, 'Cluster 2': 14.4048, 'Cluster 3': 11.9738, 'Cluster 4': 8.7854, 'Cluster 5': 7.9305, 'Cluster 6': 2.286, 'Cluster 7': 2.2448, 'Cluster 8': 2.086, 'Cluster 9': 1.8273, 'Cluster 10': 1.7586, 'Cluster 11': 1.7398, 'Cluster 12': 1.5023, 'Cluster 13': 0.9349, 'Cluster 14': 0.912... | {'2': 0.4774959786513207, '3': 0.39376798537695407, '4': 0.38391274191842995, '5': 0.23680574638628993, '6': 0.23770816272136022, '7': 0.218272177928197, '8': 0.22961892177551066} | {'0': [7, 9, 10, 16, 24, 27], '1': [3, 15], '2': [1, 2, 5, 6, 11, 12, 13, 17, 18, 19, 20, 22, 25], '3': [0, 21], '4': [4, 8, 14, 23, 26]} | {'explained_variance_ratio': [0.30379123466233027, 0.09596142648339738, 0.05048227880361536, 0.03974028989953842, 0.03441967763162391, 0.0291551130627513, 0.027165512867353494, 0.022227994743441046, 0.021403642188203214, 0.017803644541615746], 'cumulative_variance': [0.30379123466233027, 0.39975266114572766, 0.45023493... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DGalpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)]GalNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G25127JU | WURCS=2.0/4,8,7/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-4-2-3/a3-b1_a6-d1_b3-c2_d4-e1_e3-f1_f4-g1_g3-h2 | DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DGalpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)]GalNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G97118EJ | WURCS=2.0/4,8,7/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-4-2-3/a3-b1_a6-d1_b3-c2_d4-e1_e3-f1_f4-g1_g3-h2 | null | null | null | {'A2G2-GAL8': {'2': {'phi': -79.61, 'psi': -135.62, 'strain': 0.657, 'linkage': '1-3'}, '3': {'phi': -59.11, 'psi': -93.29, 'strain': 1.089, 'linkage': '1-3'}, '4': {'phi': -87.55, 'psi': -162.71, 'strain': 1.064, 'linkage': '1-3'}, '5': {'phi': -72.37, 'psi': -133.36, 'strain': 0.657, 'linkage': '1-3'}, '6': {'phi': -... | {'A2G2-GAL8': {'2': {'phi': -79.61, 'psi': -135.62, 'strain': 0.657, 'linkage': '1-3'}, '3': {'phi': -59.11, 'psi': -93.29, 'strain': 1.089, 'linkage': '1-3'}, '4': {'phi': -87.54, 'psi': -162.71, 'strain': 1.064, 'linkage': '1-3'}, '5': {'phi': -72.37, 'psi': -133.38, 'strain': 0.657, 'linkage': '1-3'}, '6': {'phi': -... | {'A2G2-GAL8': {'2': {'phi': -79.61, 'psi': -135.62, 'strain': 0.657, 'linkage': '1-3'}, '3': {'phi': -59.11, 'psi': -93.29, 'strain': 1.089, 'linkage': '1-3'}, '4': {'phi': -87.55, 'psi': -162.71, 'strain': 1.064, 'linkage': '1-3'}, '5': {'phi': -72.37, 'psi': -133.36, 'strain': 0.657, 'linkage': '1-3'}, '6': {'phi': -... | null | 8 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G25127JU', 'url': 'https://www.glygen.org/glycan/G25127JU'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'Core 2'}} | {'uniprot_canonical_ac': 'E5D8G1-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G25499LZ', 'protein_name': 'Polypeptide N-acetylgalactosaminyltransferase', 'gene': 'Galntl6', 'gene_link': 'https://www.uniprot.org/uniprot/E5D8G1', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [... | {'id': '491940082', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491940082', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G25499LZ', 'url': 'https://glytoucan.org/Structures/Glycans/G25499LZ', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G25499LZ', 'url': 'https://sandbox.... | 2,116.07 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 246 | Saccharide | HexNAc(3)Hex(3)NeuAc(2) % 1695.59798628 | freeEnd--?D-GalNAc(--3b1D-Gal,p--3a2D-NeuAc,p)--6b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sia... | {'related_accession': 'G13058MK', 'relationship': 'ancestor'};{'related_accession': 'G22165DU', 'relationship': 'ancestor'};{'related_accession': 'G55239YU', 'relationship': 'ancestor'};{'related_accession': 'G69189FV', 'relationship': 'ancestor'};{'related_accession': 'G13058MK', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00292/snfg.svg | ./torsion_data/GS00292_torsion_data.txt | {'Cluster 0': {'count': 15574, '3_2_phi_mean': -78.78, '3_2_psi_mean': -127.09, '4_3_phi_mean': -71.7, '4_3_psi_mean': -117.81, '5_4_phi_mean': 73.22, '5_4_psi_mean': 125.57, '10_4_phi_mean': -55.52, '10_4_psi_mean': -108.81, '11_4_phi_mean': 77.16, '11_4_psi_mean': 105.2, '6_5_phi_mean': -82.85, '6_5_psi_mean': -36.28... | G74864OW | GS00292 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,14,13/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-2-4-2-6-2-6/a4-b1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_j2-k1_j6-m1_k4-l1_m4-n1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dglc-HEX-1:5,14s:n-acetyl,15b:a-dman-HEX-1:5,16b:b-dglc-HEX-1:5,17s:n-acetyl,18b:b-dgal-HEX-1:5,19b:b-dglc-HEX-... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O[C@@H]4O[C@H](CO)[C... | null | 2,557.94 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Gal(b1-4);GlcNAc(b1-4) | {'GlcNAc': 7, 'Gal': 3, 'Man': 3, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 7, 'dHex': 1} | 46 | 43 | 70 | 13.352836 | {'Cluster 0': 38.93, 'Cluster 1': 28.73, 'Cluster 2': 17.58, 'Cluster 3': 12.07, 'Cluster 4': 2.69} | {'Cluster 0': 48.9951, 'Cluster 1': 14.641, 'Cluster 2': 7.6342, 'Cluster 3': 4.9995, 'Cluster 4': 3.2272, 'Cluster 5': 3.0672, 'Cluster 6': 2.6272, 'Cluster 7': 2.4498, 'Cluster 8': 2.3798, 'Cluster 9': 1.3899, 'Cluster 10': 1.0974, 'Cluster 11': 1.0974, 'Cluster 12': 1.0899, 'Cluster 13': 0.8574, 'Cluster 14': 0.7999... | {'2': 0.576686919341098, '3': 0.614538080419276, '4': 0.5751113126427424, '5': 0.290270132705809, '6': 0.21558671255126127, '7': 0.2475411370228558, '8': 0.24000331251933452} | {'0': [12, 25], '1': [2, 4, 7, 8, 9, 18, 19, 20, 21, 26], '2': [3, 5, 13, 14, 15, 22, 24], '3': [1, 6, 11, 16, 17], '4': [0, 10, 23]} | {'explained_variance_ratio': [0.2087602421876825, 0.08692261526947812, 0.05347413940921498, 0.04987992365945818, 0.04077819518217682, 0.03824389136234472, 0.032040761125403605, 0.02346278809007678, 0.022081409907646454, 0.020165938337952202], 'cumulative_variance': [0.2087602421876825, 0.2956828574571606, 0.34915699686... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G93385YJ | WURCS=2.0/6,14,13/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-2-4-2-6-2-6/a4-b1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_j2-k1_j6-m1_k4-l1_m4-n1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→4)][β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G76323CE | WURCS=2.0/5,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-1-1-3-1-5-1-5/a4-b1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_d4-h1_e3-f1_e4-g1_j2-k1_j6-m1_k4-l1_m4-n1 | null | null | N-Glycan | {'MAN5-NAG8': {'2': {'phi': -103.27, 'psi': -84.71, 'strain': 1.301, 'linkage': '1-2'}, '3': {'phi': -99.57, 'psi': -92.65, 'strain': 1.473, 'linkage': '1-2'}, '4': {'phi': -92.12, 'psi': -79.54, 'strain': 0.326, 'linkage': '1-2'}, '5': {'phi': -78.68, 'psi': -81.24, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -10... | {'MAN5-NAG8': {'2': {'phi': -103.27, 'psi': -84.71, 'strain': 1.301, 'linkage': '1-2'}, '3': {'phi': -99.51, 'psi': -92.69, 'strain': 1.473, 'linkage': '1-2'}, '4': {'phi': -92.12, 'psi': -79.48, 'strain': 0.326, 'linkage': '1-2'}, '5': {'phi': -78.62, 'psi': -81.34, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -10... | {'MAN5-NAG8': {'2': {'phi': -103.27, 'psi': -84.71, 'strain': 1.301, 'linkage': '1-2'}, '3': {'phi': -99.57, 'psi': -92.65, 'strain': 1.473, 'linkage': '1-2'}, '4': {'phi': -92.12, 'psi': -79.54, 'strain': 0.326, 'linkage': '1-2'}, '5': {'phi': -78.68, 'psi': -81.24, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': -10... | null | 14 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Bisected'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G74864OW', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491961746', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491961746', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G74864OW', 'url': 'https://glytoucan.org/Structures/Glycans/G74864OW', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G74864OW', 'url': 'https://sandbox.... | 3,160.61 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 140 | Saccharide | HexNAc(7)Hex(6)dHex(1) % 2557.94102281 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p(--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--4b1D-GlcNAc,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G30970QQ', 'relationship': 'ancestor'};{'related_accession': 'G64764LD', 'relationship': 'ancestor'};{'related_accession': 'G89009DQ', 'relationship': 'ancestor'};{'related_accession': 'G96154EW', 'relationship': 'ancestor'};{'related_accession': 'G89009DQ', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00293/snfg.svg | ./torsion_data/GS00293_torsion_data.txt | {'Cluster 0': {'count': 7869, '3_2_phi_mean': -85.25, '3_2_psi_mean': -144.15, '4_3_phi_mean': 24.22, '4_3_psi_mean': -147.28, '5_4_phi_mean': 62.83, '5_4_psi_mean': 59.6, '10_4_phi_mean': 69.62, '10_4_psi_mean': 114.68, '6_5_phi_mean': -71.09, '6_5_psi_mean': -95.18, '8_5_phi_mean': -71.52, '8_5_psi_mean': -65.94, '7_... | G20160SB | GS00293 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAc | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc | WURCS=2.0/6,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-4-2-6-2-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-h1_e3-f1_e4-g1_i2-j1_i6-l1_j4-k1_l4-m1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:a-dman-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dgal-HEX-1:5,17b:b-dglc-HEX-1:5,18s:n-acetyl,19b:b-dgal-HEX-... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | null | 2,354.86 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Gal(b1-4);GlcNAc(b1-4) | {'GlcNAc': 6, 'Gal': 3, 'Man': 3, 'Fuc': 1} | {'Hex': 6, 'HexNAc': 6, 'dHex': 1} | 42 | 40 | 65 | 13.714016 | {'Cluster 0': 26.23, 'Cluster 1': 22.64, 'Cluster 2': 19.61, 'Cluster 3': 16.79, 'Cluster 4': 14.73} | {'Cluster 0': 16.1017, 'Cluster 1': 14.5252, 'Cluster 2': 9.4957, 'Cluster 3': 6.6293, 'Cluster 4': 6.306, 'Cluster 5': 6.276, 'Cluster 6': 6.1527, 'Cluster 7': 5.7494, 'Cluster 8': 4.2229, 'Cluster 9': 4.2229, 'Cluster 10': 3.3597, 'Cluster 11': 2.2931, 'Cluster 12': 2.1365, 'Cluster 13': 2.0231, 'Cluster 14': 2.0131,... | {'2': 0.37842975651869826, '3': 0.4878016673672143, '4': 0.41752109747984834, '5': 0.38152244113187067, '6': 0.37698894119025367, '7': 0.3457643743145952, '8': 0.33694306944055596} | {'0': [12, 14, 18, 24], '1': [0, 4, 15], '2': [1, 3, 6, 9, 10, 11, 19, 20, 21, 22, 23, 28], '3': [7, 8, 16, 17, 25, 26, 27], '4': [2, 5, 13]} | {'explained_variance_ratio': [0.21239689280257756, 0.13022411652793628, 0.07190055251990078, 0.044887749969352506, 0.040629400720533296, 0.03462280798237318, 0.03219041261086956, 0.02574762568820991, 0.02166125243362306, 0.017600675931823573], 'cumulative_variance': [0.21239689280257756, 0.34262100933051387, 0.41452156... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→ | G03177DI | WURCS=2.0/6,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-4-2-6-2-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-h1_e3-f1_e4-g1_i2-j1_i6-l1_j4-k1_l4-m1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→ | G82127SW | WURCS=2.0/5,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-1-3-1-5-1-5/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-h1_e3-f1_e4-g1_i2-j1_i6-l1_j4-k1_l4-m1 | null | null | N-Glycan | {'MAN5-NAG8': {'2': {'phi': -80.24, 'psi': -61.51, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -91.2, 'psi': -62.69, 'strain': 0.567, 'linkage': '1-2'}, '4': {'phi': -98.84, 'psi': -77.31, 'strain': 0.326, 'linkage': '1-2'}, '5': {'phi': -68.8, 'psi': -74.42, 'strain': 0.558, 'linkage': '1-2'}, '6': {'phi': -94.64,... | {'MAN5-NAG8': {'2': {'phi': -80.24, 'psi': -61.51, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -91.12, 'psi': -62.68, 'strain': 0.567, 'linkage': '1-2'}, '4': {'phi': -98.85, 'psi': -77.35, 'strain': 0.326, 'linkage': '1-2'}, '5': {'phi': -68.75, 'psi': -74.41, 'strain': 0.558, 'linkage': '1-2'}, '6': {'phi': -94.6... | {'MAN5-NAG8': {'2': {'phi': -80.24, 'psi': -61.51, 'strain': 0.34, 'linkage': '1-2'}, '3': {'phi': -91.2, 'psi': -62.69, 'strain': 0.567, 'linkage': '1-2'}, '4': {'phi': -98.84, 'psi': -77.31, 'strain': 0.326, 'linkage': '1-2'}, '5': {'phi': -68.8, 'psi': -74.42, 'strain': 0.558, 'linkage': '1-2'}, '6': {'phi': -94.64,... | null | 13 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'P42867-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G20160SB', 'protein_name': 'UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase', 'gene': 'Dpagt1', 'gene_link': 'https://www.uniprot.org/uniprot/P42867', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_c... | {'id': '491937614', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491937614', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G20160SB', 'url': 'https://glytoucan.org/Structures/Glycans/G20160SB', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G20160SB', 'url': 'https://sandbox.... | 2,915.49 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 151 | Saccharide | HexNAc(6)Hex(6)dHex(1) % 2354.8616502 | freeEnd--?D-GlcNAc--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G07246CJ', 'relationship': 'ancestor'};{'related_accession': 'G34026PF', 'relationship': 'ancestor'};{'related_accession': 'G58410MO', 'relationship': 'ancestor'};{'related_accession': 'G80735OA', 'relationship': 'ancestor'};{'related_accession': 'G80735OA', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00294/snfg.svg | ./torsion_data/GS00294_torsion_data.txt | {'Cluster 0': {'count': 22844, '3_2_phi_mean': -77.59, '3_2_psi_mean': 50.75, '4_2_phi_mean': -77.98, '4_2_psi_mean': -112.75, '5_4_phi_mean': -81.01, '5_4_psi_mean': -120.17, '6_5_phi_mean': 69.42, '6_5_psi_mean': 77.54, '11_5_phi_mean': 72.55, '11_5_psi_mean': 120.23, '7_6_phi_mean': -74.32, '7_6_psi_mean': -26.03, '... | G30331AP | GS00294 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc | WURCS=2.0/6,14,13/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-4-2-6-2-6-5/a4-b1_a6-n1_b4-c1_c3-d1_c6-i1_d2-e1_d4-h1_e3-f1_e4-g1_i2-j1_i6-l1_j4-k1_l4-m1 | RES,1b:b-dglc-HEX-1:5,2s:n-acetyl,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dman-HEX-1:5,6b:a-dman-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:a-dman-HEX-1:5,14b:b-dglc-HEX-1:5,15s:n-acetyl,16b:b-dgal-HEX-1:5,17b:b-dglc-HEX-1:5,18s:n-acetyl,19b:b-dgal-HEX-... | O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H... | null | 2,500.92 | {'motif': 'G00030MO', 'motif_label': 'N-Glycan complex'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Fuc(a1-3);Gal(b1-4);Fuc(a1-6);GlcNAc(b1-4) | {'GlcNAc': 6, 'Gal': 3, 'Man': 3, 'Fuc': 2} | {'Hex': 6, 'HexNAc': 6, 'dHex': 2} | 44 | 42 | 69 | 14.073672 | {'Cluster 0': 28.55, 'Cluster 1': 23.2, 'Cluster 2': 19.33, 'Cluster 3': 16.03, 'Cluster 4': 12.89} | {'Cluster 0': 20.5129, 'Cluster 1': 9.7665, 'Cluster 2': 8.7579, 'Cluster 3': 7.723, 'Cluster 4': 7.218, 'Cluster 5': 5.3882, 'Cluster 6': 4.6745, 'Cluster 7': 4.557, 'Cluster 8': 3.6309, 'Cluster 9': 3.4884, 'Cluster 10': 2.6247, 'Cluster 11': 2.5322, 'Cluster 12': 2.271, 'Cluster 13': 2.226, 'Cluster 14': 2.2185, 'Cl... | {'2': 0.39085277014742265, '3': 0.3920289207593587, '4': 0.325519794486216, '5': 0.2788878802129226, '6': 0.28166630648831914, '7': 0.2800339934254076, '8': 0.2658726965399849} | {'0': [2, 5, 12, 18, 24, 27], '1': [3], '2': [16, 19, 25], '3': [0, 4, 7, 8, 9, 11, 15, 17, 20, 22, 26, 29, 30], '4': [1, 6, 10, 13, 14, 21, 23, 28]} | {'explained_variance_ratio': [0.15645746530800478, 0.08173080271287597, 0.07459586414923652, 0.06391426850804685, 0.0554943437294729, 0.046195629131717014, 0.03473019970149779, 0.03399869694298466, 0.02904506055668126, 0.025887159632373993], 'cumulative_variance': [0.15645746530800478, 0.23818826802088075, 0.3127841321... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→ | G08076GV | WURCS=2.0/6,14,13/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-4-2-6-2-6-5/a4-b1_a6-n1_b4-c1_c3-d1_c6-i1_d2-e1_d4-h1_e3-f1_e4-g1_i2-j1_i6-l1_j4-k1_l4-m1 | LFucpa1-3[DGalpb1-4]DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→ | G89803GR | WURCS=2.0/5,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-5-1-3-1-5-1-5-4/a4-b1_a6-n1_b4-c1_c3-d1_c6-i1_d2-e1_d4-h1_e3-f1_e4-g1_i2-j1_i6-l1_j4-k1_l4-m1 | null | null | Fucosylated N-Glycan;N-Glycan | {'MAN6-NAG9': {'2': {'phi': -66.93, 'psi': -71.89, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -96.3, 'psi': -67.54, 'strain': 0.567, 'linkage': '1-2'}, '4': {'phi': -93.85, 'psi': 49.88, 'strain': 2.369, 'linkage': '1-2'}, '5': {'phi': -62.97, 'psi': -72.21, 'strain': 0.558, 'linkage': '1-2'}, '6': {'phi': -96.93... | {'MAN6-NAG9': {'2': {'phi': -66.93, 'psi': -71.89, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -96.29, 'psi': -67.51, 'strain': 0.567, 'linkage': '1-2'}, '4': {'phi': -93.83, 'psi': 49.87, 'strain': 2.369, 'linkage': '1-2'}, '5': {'phi': -62.96, 'psi': -72.3, 'strain': 0.558, 'linkage': '1-2'}, '6': {'phi': -96.94... | {'MAN6-NAG9': {'2': {'phi': -66.93, 'psi': -71.89, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -96.3, 'psi': -67.54, 'strain': 0.567, 'linkage': '1-2'}, '4': {'phi': -93.85, 'psi': 49.88, 'strain': 2.369, 'linkage': '1-2'}, '5': {'phi': -62.97, 'psi': -72.21, 'strain': 0.558, 'linkage': '1-2'}, '6': {'phi': -96.93... | null | 14 | null | {'type': {'name': 'N-linked'}, 'subtype': {'name': 'Arm-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Complex'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Core-fucosylated'}};{'type': {'name': 'N-linked'}, 'subtype': {'name': 'Tetraantennary'}} | {'uniprot_canonical_ac': 'Q8BML3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G30331AP', 'protein_name': 'UDP-N-acetylglucosamine transferase subunit ALG13', 'gene': 'Glt28d2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BML3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence... | {'id': '491942154', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491942154', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G30331AP', 'url': 'https://glytoucan.org/Structures/Glycans/G30331AP', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G30331AP', 'url': 'https://sandbox.... | 3,089.58 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'yes', 'gnome_glycotree_nglycans': 'yes'} | 140 | Saccharide | HexNAc(6)Hex(6)dHex(2) % 2500.91955907 | freeEnd--?D-GlcNAc(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--4b1D-GlcNAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'} | {'related_accession': 'G00629DY', 'relationship': 'ancestor'};{'related_accession': 'G05049IC', 'relationship': 'ancestor'};{'related_accession': 'G45978IP', 'relationship': 'ancestor'};{'related_accession': 'G63198FP', 'relationship': 'ancestor'};{'related_accession': 'G05049IC', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00295/snfg.svg | ./torsion_data/GS00295_torsion_data.txt | {'Cluster 0': {'count': 35694, '3_2_phi_mean': -76.58, '3_2_psi_mean': -32.58, '14_2_phi_mean': -76.79, '14_2_psi_mean': -121.19, '4_3_phi_mean': -74.64, '4_3_psi_mean': -116.97, '5_4_phi_mean': -81.13, '5_4_psi_mean': 102.78, '6_5_phi_mean': -74.26, '6_5_psi_mean': -119.33, '7_6_phi_mean': -81.04, '7_6_psi_mean': 98.9... | G94522NO | GS00295 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3]DGalpNAca1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3]DGalpNAc | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)]GalNAc | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-D-GalNAc | WURCS=2.0/4,14,13/[u2112h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-4-2-4-2-4-2-4-2-3/a3-b1_a6-d1_b3-c2_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1_j4-k1_k3-l1_l4-m1_m3-n2 | RES,1b:b-dgal-HEX-1:5,2s:n-acetyl,3b:b-dgal-HEX-1:5,4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,5s:n-acetyl,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:b-dgal-HEX-1:5,9b:b-dglc-HEX-1:5,10s:n-acetyl,11b:b-dgal-HEX-1:5,12b:b-dglc-HEX-1:5,13s:n-acetyl,14b:b-dgal-HEX-1:5,15b:b-dglc-HEX-1:5,16s:n-acetyl,17b:b-dgal-HEX-1:5,18b:b-dglc-HEX-1:5... | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O[C@@H]6O[C@H](CO)[C@@H](O[C@@H]7O[C@H](CO)[C@H](O)[C@H](... | null | 2,790.99 | {'motif': 'G00034MO', 'motif_label': 'O-Glycan core 2 fuzzy'};{'motif': 'G00065MO', 'motif_label': 'Polysialic acid'};{'motif': 'G46055MA', 'motif_label': "I' antigen"} | Neu5Ac(a2-3) | {'Gal': 6, 'GlcNAc': 5, 'Neu5Ac': 2, 'GalNAc': 1} | {'Hex': 6, 'HexNAc': 6, 'Neu5Ac': 2} | 54 | 48 | 77 | 14.893611 | {'Cluster 0': 44.61, 'Cluster 1': 24.27, 'Cluster 2': 19.2, 'Cluster 3': 8.47, 'Cluster 4': 3.45} | {'Cluster 0': 19.3893, 'Cluster 1': 18.8694, 'Cluster 2': 15.9109, 'Cluster 3': 8.9879, 'Cluster 4': 8.9441, 'Cluster 5': 6.9668, 'Cluster 6': 5.5069, 'Cluster 7': 3.7221, 'Cluster 8': 2.7685, 'Cluster 9': 2.6622, 'Cluster 10': 1.1336, 'Cluster 11': 0.9724, 'Cluster 12': 0.6237, 'Cluster 13': 0.6237, 'Cluster 14': 0.44... | {'2': 0.48904941709251576, '3': 0.48318147786993587, '4': 0.3451369957688593, '5': 0.354900007322591, '6': 0.3218084716567403, '7': 0.2743494473930316, '8': 0.3127927074389935} | {'0': [0, 23, 33], '1': [5, 9, 10, 15, 28, 36], '2': [12, 17, 22, 35], '3': [1, 3, 4, 6, 7, 13, 14, 16, 19, 20, 21, 24, 25, 30, 31], '4': [2, 8, 11, 18, 26, 27, 29, 32, 34]} | {'explained_variance_ratio': [0.30547485453873113, 0.1568546828534752, 0.06235612940029092, 0.03727470625539614, 0.027817863333333442, 0.0226685026850197, 0.018172912972208247, 0.014925733403198804, 0.014079456650419223, 0.01223349028269754], 'cumulative_variance': [0.30547485453873113, 0.46232953739220634, 0.524685666... | 4 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3]DGalpNAca1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)]GalNAc(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-GalpNAc-(1→ | G57293OE | WURCS=2.0/4,14,13/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-4-2-4-2-4-2-4-2-3/a3-b1_a6-d1_b3-c2_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1_j4-k1_k3-l1_l4-m1_m3-n2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3]DGalpNAcb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-6)[Neu5Ac(a2-3)Gal(b1-3)]GalNAc(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→3)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-GalpNAc-(1→ | G59003FO | WURCS=2.0/4,14,13/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-4-2-4-2-4-2-4-2-3/a3-b1_a6-d1_b3-c2_d4-e1_e3-f1_f4-g1_g3-h1_h4-i1_i3-j1_j4-k1_k3-l1_l4-m1_m3-n2 | null | null | null | {'A2G2-GAL14': {'2': {'phi': -70.27, 'psi': -159.32, 'strain': 0.699, 'linkage': '1-3'}, '3': {'phi': -70.93, 'psi': -92.29, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -73.82, 'psi': -126.62, 'strain': 0.86, 'linkage': '1-3'}, '5': {'phi': -55.89, 'psi': -133.54, 'strain': 1.634, 'linkage': '1-3'}, '6': {'phi': -7... | {'A2G2-GAL14': {'2': {'phi': -70.27, 'psi': -159.32, 'strain': 0.699, 'linkage': '1-3'}, '3': {'phi': -71.01, 'psi': -92.22, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -73.84, 'psi': -126.65, 'strain': 0.86, 'linkage': '1-3'}, '5': {'phi': -55.85, 'psi': -133.53, 'strain': 1.634, 'linkage': '1-3'}, '6': {'phi': -7... | {'A2G2-GAL14': {'2': {'phi': -70.27, 'psi': -159.32, 'strain': 0.699, 'linkage': '1-3'}, '3': {'phi': -70.93, 'psi': -92.29, 'strain': -0.0, 'linkage': '1-3'}, '4': {'phi': -73.82, 'psi': -126.62, 'strain': 0.86, 'linkage': '1-3'}, '5': {'phi': -55.89, 'psi': -133.54, 'strain': 1.634, 'linkage': '1-3'}, '6': {'phi': -7... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00296/snfg.svg | ./torsion_data/GS00296_torsion_data.txt | {'Cluster 0': {'count': 8785, '3_2_phi_mean': -74.61, '3_2_psi_mean': 114.68, '4_3_phi_mean': -83.21, '4_3_psi_mean': 84.53, '5_4_phi_mean': -73.78, '5_4_psi_mean': -119.45, '6_5_phi_mean': -80.47, '6_5_psi_mean': 94.76, '7_6_phi_mean': -70.16, '7_6_psi_mean': -101.49, '8_6_phi_mean': -69.96, '8_6_psi_mean': 133.28, '3... | G60501QA | GS00296 | DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcp | Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc | β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,7,6/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-3-2-4/a4-b1_b3-c1_c4-d1_d3-e1_e3-f1_e4-g1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:b-dgal-HEX-1:5,9b:a-lgal-HEX-1:5|6:d,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(4+1)5d,5:5o(3+1)6d,6:6d(2+1)7n,7:6o(3+1)8d,8:6o(4+1)9d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H]5NC(C)=O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO | null | 1,218.44 | {'motif': 'G00047MO', 'motif_label': 'Lea'};{'motif': 'G00047MO', 'motif_label': 'Lewis a'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00056MO', 'motif_label': 'Type 1 LN'} | Gal(b1-3);Fuc(a1-4) | {'Gal': 3, 'GlcNAc': 2, 'Fuc': 1, 'Glc': 1} | {'Hex': 4, 'HexNAc': 2, 'dHex': 1} | 20 | 22 | 35 | 11.784505 | {'Cluster 0': 29.28, 'Cluster 1': 24.62, 'Cluster 2': 22.08, 'Cluster 3': 18.49, 'Cluster 4': 5.53} | {'Cluster 0': 46.6587, 'Cluster 1': 13.6086, 'Cluster 2': 11.9788, 'Cluster 3': 7.2926, 'Cluster 4': 5.9161, 'Cluster 5': 4.8562, 'Cluster 6': 4.6929, 'Cluster 7': 1.1299, 'Cluster 8': 1.0332, 'Cluster 9': 0.9632, 'Cluster 10': 0.4966, 'Cluster 11': 0.4666, 'Cluster 12': 0.3266, 'Cluster 13': 0.2733, 'Cluster 14': 0.14... | {'2': 0.4903311320348653, '3': 0.4106685957445872, '4': 0.3116393823572529, '5': 0.3199840914524084, '6': 0.33170037490986765, '7': 0.27655014386152876, '8': 0.28198795581906766} | {'0': [1, 2, 3, 4, 8, 11, 14, 17, 19], '1': [6, 9], '2': [7, 15, 18], '3': [5, 10, 12, 13, 16], '4': [0]} | {'explained_variance_ratio': [0.23372061390640766, 0.12943299676809722, 0.08857088984595704, 0.04977537721997168, 0.04002584979659711, 0.03180062192150559, 0.025467865910456584, 0.021720248086272636, 0.017499988866823458, 0.01685679698053552], 'cumulative_variance': [0.23372061390640766, 0.3631536106745049, 0.451724500... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(a1- | β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G96344JT | WURCS=2.0/4,7,6/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-3-2-4/a4-b1_b3-c1_c4-d1_d3-e1_e3-f1_e4-g1 | DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpb1-OH | Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1- | β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G77632HJ | WURCS=2.0/4,7,6/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-3-2-4/a4-b1_b3-c1_c4-d1_d3-e1_e3-f1_e4-g1 | null | null | null | {'GAL3-NAG4': {'2': {'phi': -87.09, 'psi': -154.31, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -68.9, 'psi': -109.4, 'strain': 0.087, 'linkage': '1-3'}, '4': {'phi': -79.35, 'psi': -137.0, 'strain': 0.657, 'linkage': '1-3'}, '5': {'phi': -63.4, 'psi': -129.03, 'strain': 0.882, 'linkage': '1-3'}, '6': {'phi': -87.... | {'GAL3-NAG4': {'2': {'phi': -87.09, 'psi': -154.31, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -68.91, 'psi': -109.4, 'strain': 0.087, 'linkage': '1-3'}, '4': {'phi': -79.26, 'psi': -137.0, 'strain': 0.657, 'linkage': '1-3'}, '5': {'phi': -63.46, 'psi': -129.06, 'strain': 0.882, 'linkage': '1-3'}, '6': {'phi': -8... | {'GAL3-NAG4': {'2': {'phi': -87.09, 'psi': -154.31, 'strain': 0.668, 'linkage': '1-3'}, '3': {'phi': -68.9, 'psi': -109.4, 'strain': 0.087, 'linkage': '1-3'}, '4': {'phi': -79.35, 'psi': -137.0, 'strain': 0.657, 'linkage': '1-3'}, '5': {'phi': -63.4, 'psi': -129.03, 'strain': 0.882, 'linkage': '1-3'}, '6': {'phi': -87.... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00297/snfg.svg | ./torsion_data/GS00297_torsion_data.txt | {'Cluster 0': {'count': 9617, '3_2_phi_mean': -69.64, '3_2_psi_mean': -95.31, '3_2_phi_std': 9.4, '3_2_psi_std': 13.68}, 'Cluster 1': {'count': 8725, '3_2_phi_mean': -70.82, '3_2_psi_mean': -71.88, '3_2_phi_std': 10.95, '3_2_psi_std': 16.82}, 'Cluster 2': {'count': 8661, '3_2_phi_mean': -76.57, '3_2_psi_mean': -133.73,... | G97501SC | GS00297 | DGlcpb1-3LFucpa1-OH | DGlcpb1-3LFucp | Glc(b1-3)Fuc | β-D-Glcp-(1→3)-L-Fuc | WURCS=2.0/2,2,1/[u1221m][a2122h-1b_1-5]/1-2/a3-b1 | RES,1b:a-lgal-HEX-1:5|6:d,2b:b-dglc-HEX-1:5,LIN,1:1o(3+1)2d, | O1C(O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H]1C | null | 326.12 | null | Glc(b1-3) | {'Glc': 1, 'Fuc': 1} | {'Hex': 1, 'dHex': 1} | 3 | 7 | 10 | 7.906875 | {'Cluster 0': 32.05, 'Cluster 1': 29.08, 'Cluster 2': 28.87, 'Cluster 3': 5.84, 'Cluster 4': 4.16} | {'Cluster 0': 77.9455, 'Cluster 1': 12.5521, 'Cluster 2': 3.1797, 'Cluster 3': 2.1998, 'Cluster 4': 1.8931, 'Cluster 5': 1.1132, 'Cluster 6': 0.7133, 'Cluster 7': 0.3766, 'Cluster 8': 0.0267} | {'2': 0.5503788950552749, '3': 0.42092543833653107, '4': 0.41358522377010115, '5': 0.33740434350884024, '6': 0.34188475528691137, '7': 0.34883393815103114, '8': 0.29505734272418255} | {'0': [0], '1': [1, 2, 5, 8], '2': [3, 7], '3': [], '4': [4, 6]} | {'explained_variance_ratio': [0.19071561238530235, 0.14909858872899887, 0.07838789810243305, 0.049813857539477854, 0.03275832942233119, 0.03125311806420795, 0.028164545170798975, 0.02443006225112048, 0.0201922868347811, 0.019333184864545657], 'cumulative_variance': [0.19071561238530235, 0.3398142011143012, 0.4182020992... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGlcpb1-3LFucpa1-OH | Glc(b1-3)Fuc(a1- | β-D-Glcp-(1→3)-α-L-Fucp-(1→ | G36855WW | WURCS=2.0/2,2,1/[a1221m-1a_1-5][a2122h-1b_1-5]/1-2/a3-b1 | DGlcpb1-3LFucpb1-OH | Glc(b1-3)Fuc(b1- | β-D-Glcp-(1→3)-β-L-Fucp-(1→ | G45792OQ | WURCS=2.0/2,2,1/[a1221m-1b_1-5][a2122h-1b_1-5]/1-2/a3-b1 | null | null | null | {'FUC2-BGC3': {'2': {'phi': -59.01, 'psi': 146.13, 'strain': 3.381, 'linkage': '1-3'}, '3': {'phi': -69.03, 'psi': 170.01, 'strain': 2.778, 'linkage': '1-3'}, '4': {'phi': -90.53, 'psi': 100.55, 'strain': 3.381, 'linkage': '1-3'}, '5': {'phi': -108.96, 'psi': 169.16, 'strain': 3.381, 'linkage': '1-3'}, '6': {'phi': -86... | {'FUC2-BGC3': {'2': {'phi': -59.01, 'psi': 146.13, 'strain': 3.381, 'linkage': '1-3'}, '3': {'phi': -69.02, 'psi': 170.0, 'strain': 2.778, 'linkage': '1-3'}, '4': {'phi': -90.53, 'psi': 100.55, 'strain': 3.381, 'linkage': '1-3'}, '5': {'phi': -108.89, 'psi': 169.13, 'strain': 3.381, 'linkage': '1-3'}, '6': {'phi': -86.... | {'FUC2-BGC3': {'2': {'phi': -59.01, 'psi': 146.13, 'strain': 3.381, 'linkage': '1-3'}, '3': {'phi': -69.03, 'psi': 170.01, 'strain': 2.778, 'linkage': '1-3'}, '4': {'phi': -90.53, 'psi': 100.55, 'strain': 3.381, 'linkage': '1-3'}, '5': {'phi': -108.96, 'psi': 169.16, 'strain': 3.381, 'linkage': '1-3'}, '6': {'phi': -86... | null | 2 | {'taxid': 10029, 'name': 'Cricetulus griseus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G36855WW', 'url': 'https://www.glygen.org/glycan/G36855WW'}], 'common_name': 'Chinese hamster', 'glygen_name': 'Hamster', 'reference_species': 'Cricetulus griseus [10029]'};{'taxid': 9606... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'O-fucose core'}} | {'uniprot_canonical_ac': 'Q8VHI3-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G97501SC', 'protein_name': 'GDP-fucose protein O-fucosyltransferase 2', 'gene': 'Pofut2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8VHI3', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id'... | {'id': '491869354', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491869354', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G97501SC', 'url': 'https://glytoucan.org/Structures/Glycans/G97501SC', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G97501SC', 'url': 'https://sandbox.... | 424.23 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 984 | Saccharide | Hex(1)dHex(1) % 326.12129707 | freeEnd--?L-Fuc--3b1D-Glc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G08453HV', 'relationship': 'ancestor'};{'related_accession': 'G42494UJ', 'relationship': 'ancestor'};{'related_accession': 'G60898ZW', 'relationship': 'ancestor'};{'related_accession': 'G61197BF', 'relationship': 'ancestor'};{'related_accession': 'G80776EG', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.8.25'} |
./raw_dataGS00298/snfg.svg | ./torsion_data/GS00298_torsion_data.txt | {} | G58436AI | GS00298 | DNeup5Aca2-3DGalpa1-OH | DNeup5Aca2-3DGalp | Neu5Ac(a2-3)Gal | α-D-Neup5Ac-(2→3)-D-Gal | WURCS=2.0/2,2,1/[u2112h][Aad21122h-2a_2-6_5*NCC/3=O]/1-2/a3-b2 | RES,1b:b-dgal-HEX-1:5,2b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,3s:n-acetyl,LIN,1:1o(3+2)2d,2:2d(5+1)3n, | O1C(O)[C@H](O)[C@@H](O[C@]2(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O2)[C@@H](O)[C@H]1CO | null | 471.16 | null | Neu5Ac(a2-3) | {'Neu5Ac': 1, 'Gal': 1} | {'Hex': 1, 'Neu5Ac': 1} | 8 | 10 | 14 | 8.790306 | {'Cluster 0': 32.59, 'Cluster 1': 26.35, 'Cluster 2': 23.76, 'Cluster 3': 9.65, 'Cluster 4': 7.66} | {'Cluster 0': 28.6738, 'Cluster 1': 26.5707, 'Cluster 2': 14.4719, 'Cluster 3': 8.8991, 'Cluster 4': 5.9361, 'Cluster 5': 4.4062, 'Cluster 6': 4.1496, 'Cluster 7': 3.2797, 'Cluster 8': 1.5532, 'Cluster 9': 1.2165, 'Cluster 10': 0.8432} | {'2': 0.4877709995035691, '3': 0.44282320720135354, '4': 0.46840632916999586, '5': 0.4776433471671364, '6': 0.4940841253594688, '7': 0.46843778152690185, '8': 0.4464425607606889} | {'0': [4], '1': [0, 3, 5, 6, 8, 9], '2': [10], '3': [2], '4': [1, 7]} | {'explained_variance_ratio': [0.21858224412401225, 0.09009305109504394, 0.06421866967442526, 0.05856587131668789, 0.042188325372797535, 0.03624643311908668, 0.02926487675481386, 0.027028651453813387, 0.022096755804384045, 0.019590544275551146], 'cumulative_variance': [0.21858224412401225, 0.3086752952190562, 0.37289396... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpa1-OH | Neu5Ac(a2-3)Gal(a1- | α-D-Neup5Ac-(2→3)-α-D-Galp-(1→ | G71814NS | WURCS=2.0/2,2,1/[a2112h-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2/a3-b2 | DNeup5Aca2-3DGalpb1-OH | Neu5Ac(a2-3)Gal(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→ | G30207PZ | WURCS=2.0/2,2,1/[a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2/a3-b2 | null | null | null | {} | {} | {} | {'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G58436AI'}]};{'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G58... | 2 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G58436AI', 'url': 'https://glycosmos.org/glycans/show/G58436AI'}, {'database': 'Subsumption', 'id': 'G30207PZ', 'url': 'https://www.glygen.org/glycan/G30207PZ'}, {'database': 'Subsumption', 'id': 'G77824XV... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491904340', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491904340', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1850', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '37404', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+37404', 'database': 'Ca... | 611.32 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 984 | Saccharide | Hex(1)NeuAc(1) % 471.158804835 | freeEnd--?D-Gal--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000089', 'name': 'GM4', 'keywords': 'Glycolipid; Monosialylated ganglioside'} | {'related_accession': 'G08182YX', 'relationship': 'ancestor'};{'related_accession': 'G08362FW', 'relationship': 'ancestor'};{'related_accession': 'G18095RP', 'relationship': 'ancestor'};{'related_accession': 'G30294MN', 'relationship': 'ancestor'};{'related_accession': 'G30599HV', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00299/snfg.svg | ./torsion_data/GS00299_torsion_data.txt | {'Cluster 0': {'count': 13986, '3_2_phi_mean': -76.81, '3_2_psi_mean': 113.09, '3_2_phi_std': 16.5, '3_2_psi_std': 34.63}, 'Cluster 1': {'count': 7945, '3_2_phi_mean': -76.62, '3_2_psi_mean': 113.95, '3_2_phi_std': 15.82, '3_2_psi_std': 41.51}, 'Cluster 2': {'count': 7347, '3_2_phi_mean': -76.13, '3_2_psi_mean': 111.81... | G10158SF | GS00299 | DNeup5Aca2-8DNeup5Aca2-3DGalpb1-4DGlcpa1-OH | DNeup5Aca2-8DNeup5Aca2-3DGalpb1-4DGlcp | Neu5Ac(a2-8)Neu5Ac(a2-3)Gal(b1-4)Glc | α-D-Neup5Ac-(2→8)-α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/3,4,3/[u2122h][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-3/a4-b1_b3-c2_c8-d2 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,4s:n-acetyl,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-acetyl,LIN,1:1o(4+1)2d,2:2o(3+2)3d,3:3d(5+1)4n,4:3o(8+2)5d,5:5d(5+1)6n, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)CO)O3)[C@H]2O)[C@H]1CO | null | 924.31 | {'motif': 'G30207PZ', 'motif_label': 'GM4'} | Neu5Ac(a2-8) | {'Neu5Ac': 2, 'Gal': 1, 'Glc': 1} | {'Hex': 2, 'Neu5Ac': 2} | 18 | 18 | 27 | 10.538747 | {'Cluster 0': 34.96, 'Cluster 1': 19.86, 'Cluster 2': 18.37, 'Cluster 3': 15.77, 'Cluster 4': 11.05} | {'Cluster 0': 32.3993, 'Cluster 1': 19.0731, 'Cluster 2': 12.0113, 'Cluster 3': 7.1193, 'Cluster 4': 6.8418, 'Cluster 5': 5.387, 'Cluster 6': 5.142, 'Cluster 7': 3.2972, 'Cluster 8': 2.1148, 'Cluster 9': 2.0898, 'Cluster 10': 1.7323, 'Cluster 11': 1.6748, 'Cluster 12': 0.7199, 'Cluster 13': 0.22, 'Cluster 14': 0.1775} | {'2': 0.36605840826839353, '3': 0.33680791824698747, '4': 0.44209892531693384, '5': 0.46382833753328234, '6': 0.3697496345103135, '7': 0.3877374444478582, '8': 0.3906823598782147} | {'0': [5, 11], '1': [0, 7, 13], '2': [4, 10], '3': [1, 3, 8, 9, 14], '4': [2, 6, 12]} | {'explained_variance_ratio': [0.21217488805506496, 0.10101794083534796, 0.07220766049630338, 0.0634729326359604, 0.041993543802085184, 0.03480434204123729, 0.028164575002218653, 0.02292573421900238, 0.01996385873750902, 0.018061534494299036], 'cumulative_variance': [0.21217488805506496, 0.3131928288904129, 0.3854004893... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-8DNeup5Aca2-3DGalpb1-4DGlcpa1-OH | Neu5Ac(a2-8)Neu5Ac(a2-3)Gal(b1-4)Glc(a1- | α-D-Neup5Ac-(2→8)-α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G58409WK | WURCS=2.0/3,4,3/[a2122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-3/a4-b1_b3-c2_c8-d2 | DNeup5Aca2-8DNeup5Aca2-3DGalpb1-4DGlcpb1-OH | Neu5Ac(a2-8)Neu5Ac(a2-3)Gal(b1-4)Glc(b1- | α-D-Neup5Ac-(2→8)-α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G98544DH | WURCS=2.0/3,4,3/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-3/a4-b1_b3-c2_c8-d2 | GD3 | null | null | {'GLC2-GAL3': {'2': {'phi': -60.84, 'psi': 131.98, 'strain': 0.267, 'linkage': '1-4'}, '3': {'phi': -71.64, 'psi': 128.37, 'strain': 0.008, 'linkage': '1-4'}, '4': {'phi': -61.87, 'psi': 121.63, 'strain': 0.031, 'linkage': '1-4'}, '5': {'phi': -65.62, 'psi': 136.51, 'strain': 0.267, 'linkage': '1-4'}, '6': {'phi': -78.... | {'GLC2-GAL3': {'2': {'phi': -60.84, 'psi': 131.98, 'strain': 0.267, 'linkage': '1-4'}, '3': {'phi': -71.64, 'psi': 128.41, 'strain': 0.008, 'linkage': '1-4'}, '4': {'phi': -61.88, 'psi': 121.6, 'strain': 0.031, 'linkage': '1-4'}, '5': {'phi': -65.66, 'psi': 136.49, 'strain': 0.267, 'linkage': '1-4'}, '6': {'phi': -78.1... | {'GLC2-GAL3': {'2': {'phi': -60.84, 'psi': 131.98, 'strain': 0.267, 'linkage': '1-4'}, '3': {'phi': -71.64, 'psi': 128.37, 'strain': 0.008, 'linkage': '1-4'}, '4': {'phi': -61.87, 'psi': 121.63, 'strain': 0.031, 'linkage': '1-4'}, '5': {'phi': -65.62, 'psi': 136.51, 'strain': 0.267, 'linkage': '1-4'}, '6': {'phi': -78.... | {'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G10158SF'}]};{'taxon_id': '9031', 'taxon_label': 'Gallus gallus (chicken)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00300/snfg.svg | ./torsion_data/GS00300_torsion_data.txt | {} | G76001GO | GS00300 | DManpa1-OH | DManp | Man | D-Man | WURCS=2.0/1,1,0/[u1122h]/1/ | RES 1b:b-dman-HEX-1:5 | O1C(O)[C@@H](O)[C@@H](O)[C@H](O)[C@H]1CO | null | 180.06 | null | null | {'Man': 1} | {'Hex': 1} | 1 | 5 | 6 | 6.637183 | {'Cluster 0': 24.65, 'Cluster 1': 21.02, 'Cluster 2': 20.42, 'Cluster 3': 20.13, 'Cluster 4': 13.79} | {'Cluster 0': 34.4366, 'Cluster 1': 30.047, 'Cluster 2': 28.6571, 'Cluster 3': 4.2496, 'Cluster 4': 1.3699, 'Cluster 5': 0.8599, 'Cluster 6': 0.38} | {'2': 0.3202348250982842, '3': 0.27251448274429496, '4': 0.25881037441285554, '5': 0.26103013405008635, '6': 0.24583953629109664, '7': 0.24450727433259345, '8': 0.2477354738785299} | {'0': [], '1': [2], '2': [0, 4], '3': [5], '4': [1, 3, 6]} | {'explained_variance_ratio': [0.09780585683394416, 0.09050316485166167, 0.0806911366227126, 0.07175123445535918, 0.0626677910557762, 0.05747653424504811, 0.04428361221531731, 0.04179096434225587, 0.04076260656563819, 0.0376320375109635], 'cumulative_variance': [0.09780585683394416, 0.18830902168560582, 0.26900015830831... | 0 | null | null | null | null | null | DManpa1-OH | Man(a1- | α-D-Manp-(1→ | G61491DK | WURCS=2.0/1,1,0/[a1122h-1a_1-5]/1/ | DManpb1-OH | Man(b1- | β-D-Manp-(1→ | G74840NI | WURCS=2.0/1,1,0/[a1122h-1b_1-5]/1/ | null | null | null | {} | {} | {} | null | 1 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G70323CJ', 'url': 'https://www.glygen.org/glycan/G70323CJ'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'};{'taxid': 4932, 'name': 'Saccharomyces c... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'O-mannose'}} | {'uniprot_canonical_ac': 'Q8BGQ4-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G76001GO', 'protein_name': 'Protein O-mannosyl-transferase 2', 'gene': 'Pomt2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BGQ4', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G76001G... | {'id': '491914428', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491914428', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '18256', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '41017', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+41017', 'database': 'C... | 250.14 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 1,969 | Composition | Hex(1) % 180.0633882 | freeEnd--?D-Man$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G55197XN', 'relationship': 'ancestor'};{'related_accession': 'G81399MY', 'relationship': 'ancestor'};{'related_accession': 'G81399MY', 'relationship': 'basecomposition'};{'related_accession': 'G76001GO', 'relationship': 'composition'};{'related_accession': 'G36756DP', 'relationship': 'descendant'... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00302/snfg.svg | ./torsion_data/GS00302_torsion_data.txt | {'Cluster 0': {'count': 8593, '3_2_phi_mean': -73.86, '3_2_psi_mean': -116.72, '4_3_phi_mean': -79.98, '4_3_psi_mean': 99.72, '5_4_phi_mean': -67.18, '5_4_psi_mean': -108.36, '13_4_phi_mean': -69.33, '13_4_psi_mean': 140.92, '6_5_phi_mean': -77.14, '6_5_psi_mean': 138.84, '7_6_phi_mean': -67.54, '7_6_psi_mean': -108.46... | G02776UX | GS00302 | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpb1-OH | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcp | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc | α-L-Fucp-(1→2)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,12,11/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3-4-2-3-2-4-4/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1_f4-h1_h3-i1_i3-j1_i4-l1_j2-k1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:a-lgal-HEX-1:5|6:d,6b:b-dgal-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:a-lgal-HEX-1:5|6:d,10b:b-dgal-HEX-1:5,11b:b-dglc-HEX-1:5,12s:n-acetyl,13b:b-dgal-HEX-1:5,14b:a-lgal-HEX-1:5|6:d,15b:a-lgal-HEX-1:5|6:d,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:... | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@@H]7O[C@H](CO)[C@@H](O[C@@H]8O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]8O)[C@H](O[C@@H]8O[C@H](CO)[C@H](O)[C@H](O)[C@H]8O[C@@H]9O[C@@H](C)[C@@H](O)[C... | null | 2,021.74 | {'motif': 'G00294TN', 'motif_label': 'Blood group H (type 1)'};{'motif': 'G39211DH', 'motif_label': 'Leb'};{'motif': 'G39211DH', 'motif_label': 'Lewis b'};{'motif': 'G79535HZ', 'motif_label': 'Lex-Lex'} | Fuc(a1-3);Fuc(a1-2);Fuc(a1-4) | {'Fuc': 4, 'Gal': 4, 'GlcNAc': 3, 'Glc': 1} | {'Hex': 5, 'HexNAc': 3, 'dHex': 4} | 33 | 34 | 57 | 13.79103 | {'Cluster 0': 28.64, 'Cluster 1': 23.57, 'Cluster 2': 21.32, 'Cluster 3': 16.86, 'Cluster 4': 9.61} | {'Cluster 0': 33.6266, 'Cluster 1': 17.7849, 'Cluster 2': 11.3689, 'Cluster 3': 10.9156, 'Cluster 4': 10.1357, 'Cluster 5': 2.8164, 'Cluster 6': 2.6031, 'Cluster 7': 1.4565, 'Cluster 8': 1.1332, 'Cluster 9': 1.1199, 'Cluster 10': 1.0332, 'Cluster 11': 0.9832, 'Cluster 12': 0.8432, 'Cluster 13': 0.7266, 'Cluster 14': 0.... | {'2': 0.3954770755169837, '3': 0.33852515948461004, '4': 0.28947053025145414, '5': 0.2690370404015059, '6': 0.2725154637715031, '7': 0.24994300772182154, '8': 0.22286810303874438} | {'0': [3, 6, 10, 15, 18, 19, 21, 26], '1': [11], '2': [1, 2, 4, 7, 8, 9, 13, 14, 16, 17, 22, 23, 24, 25, 27, 28], '3': [5, 12, 20], '4': [0, 29]} | {'explained_variance_ratio': [0.17742198113925947, 0.10936643896074073, 0.09387146381078355, 0.052759252573301794, 0.04743497092478271, 0.04369630686022632, 0.03360409639648347, 0.02238251814563876, 0.020028673974923052, 0.017328606838536632], 'cumulative_variance': [0.17742198113925947, 0.2867884201000002, 0.380659883... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(a1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G07278EM | WURCS=2.0/4,12,11/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3-4-2-3-2-4-4/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1_f4-h1_h3-i1_i3-j1_i4-l1_j2-k1 | LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpb1-OH | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(b1- | α-L-Fucp-(1→2)-β-D-Galp-(1→3)[α-L-Fucp-(1→4)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G43891JJ | WURCS=2.0/4,12,11/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3-4-2-3-2-4-4/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1_f4-h1_h3-i1_i3-j1_i4-l1_j2-k1 | null | null | null | {'GAL10-FUC11': {'2': {'phi': -67.96, 'psi': 134.97, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -66.06, 'psi': 133.16, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -82.26, 'psi': 135.66, 'strain': 1.582, 'linkage': '1-2'}, '5': {'phi': -70.1, 'psi': 133.36, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -73... | {'GAL10-FUC11': {'2': {'phi': -67.96, 'psi': 134.97, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -66.08, 'psi': 133.21, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -82.32, 'psi': 135.7, 'strain': 1.582, 'linkage': '1-2'}, '5': {'phi': -70.14, 'psi': 133.37, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -73... | {'GAL10-FUC11': {'2': {'phi': -67.96, 'psi': 134.97, 'strain': 0.149, 'linkage': '1-2'}, '3': {'phi': -66.06, 'psi': 133.16, 'strain': 0.149, 'linkage': '1-2'}, '4': {'phi': -82.26, 'psi': 135.66, 'strain': 1.582, 'linkage': '1-2'}, '5': {'phi': -70.1, 'psi': 133.36, 'strain': 0.426, 'linkage': '1-2'}, '6': {'phi': -73... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G02776UX'}]} | 12 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G02776UX', 'url': 'https://glycosmos.org/glycans/show/G02776UX'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Neo-lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G02776UX', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G02776... | {'id': '491839019', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491839019', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '12761', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '28863', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+28863', 'database': 'C... | 2,498.28 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 164 | Saccharide | HexNAc(3)Hex(5)dHex(4) % 2021.7444355 | freeEnd--?D-Glc--4b1D-Gal,p--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3b1D-GlcNAc,p(--3b1D-Gal,p--2a1L-Fuc,p)--4a1L-Fuc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000002', 'name': 'Type 2 LN2', 'synonym': 'i antigen', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type ... | {'related_accession': 'G36495EJ', 'relationship': 'ancestor'};{'related_accession': 'G70787JZ', 'relationship': 'ancestor'};{'related_accession': 'G82109EE', 'relationship': 'ancestor'};{'related_accession': 'G84026AP', 'relationship': 'ancestor'};{'related_accession': 'G70787JZ', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00303/snfg.svg | ./torsion_data/GS00303_torsion_data.txt | {'Cluster 0': {'count': 10785, '3_2_phi_mean': -74.58, '3_2_psi_mean': 114.63, '4_3_phi_mean': -81.06, '4_3_psi_mean': 83.69, '5_4_phi_mean': -68.32, '5_4_psi_mean': -107.99, '8_4_phi_mean': -69.2, '8_4_psi_mean': 140.97, '6_5_phi_mean': -81.26, '6_5_psi_mean': 122.52, '7_6_phi_mean': -73.71, '7_6_psi_mean': 118.3, '3_... | G30648VY | GS00303 | LFucpa1-3[DGalpb1-3DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | LFucpa1-3[DGalpb1-3DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcp | Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/4,7,6/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3-2/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:a-lgal-HEX-1:5|6:d,6b:b-dgal-HEX-1:5,7b:b-dglc-HEX-1:5,8s:n-acetyl,9b:b-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:3o(4+1)6d,6:6o(3+1)7d,7:7d(2+1)8n,8:7o(3+1)9d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H]5NC(C)=O)[C@H]4O)[C@H](O[C@@H]4O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]4O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO | null | 1,218.44 | {'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00056MO', 'motif_label': 'Type 1 LN'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'Lex'} | Gal(b1-3);Fuc(a1-3) | {'Gal': 3, 'GlcNAc': 2, 'Fuc': 1, 'Glc': 1} | {'Hex': 4, 'HexNAc': 2, 'dHex': 1} | 20 | 22 | 35 | 11.647128 | {'Cluster 0': 35.95, 'Cluster 1': 24.37, 'Cluster 2': 22.44, 'Cluster 3': 11.71, 'Cluster 4': 5.52} | {'Cluster 0': 51.4082, 'Cluster 1': 14.2186, 'Cluster 2': 10.3956, 'Cluster 3': 6.1927, 'Cluster 4': 6.0694, 'Cluster 5': 3.1397, 'Cluster 6': 1.8431, 'Cluster 7': 1.4932, 'Cluster 8': 1.2799, 'Cluster 9': 1.0632, 'Cluster 10': 0.6499, 'Cluster 11': 0.5633, 'Cluster 12': 0.5366, 'Cluster 13': 0.4566, 'Cluster 14': 0.33... | {'2': 0.5275313202719603, '3': 0.3994906068481326, '4': 0.4119458925803473, '5': 0.3058695998459793, '6': 0.34638939905187033, '7': 0.3214636008796704, '8': 0.3320200311377888} | {'0': [0, 14], '1': [3, 5, 10, 12, 17], '2': [6, 18], '3': [1, 2, 4, 7, 8, 13, 15, 16], '4': [9, 11]} | {'explained_variance_ratio': [0.17317493956934293, 0.12794465257208176, 0.09194596084170376, 0.055489299687705385, 0.04328658462163392, 0.03307493121670018, 0.027868401684545668, 0.022928238988069772, 0.021531964551738076, 0.017575689482841248], 'cumulative_variance': [0.17317493956934293, 0.3011195921414247, 0.3930655... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | LFucpa1-3[DGalpb1-3DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH | Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(a1- | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G88646XC | WURCS=2.0/4,7,6/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3-2/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1 | LFucpa1-3[DGalpb1-3DGlcpNAcb1-3DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcpb1-OH | Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(b1- | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G63992GH | WURCS=2.0/4,7,6/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3-2/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1 | null | null | null | {'GAL3-NAG4': {'2': {'phi': -85.55, 'psi': -140.12, 'strain': 0.737, 'linkage': '1-3'}, '3': {'phi': -76.2, 'psi': -138.11, 'strain': 0.657, 'linkage': '1-3'}, '4': {'phi': -85.29, 'psi': -101.0, 'strain': 0.912, 'linkage': '1-3'}, '5': {'phi': -85.81, 'psi': -108.17, 'strain': 0.912, 'linkage': '1-3'}, '6': {'phi': -7... | {'GAL3-NAG4': {'2': {'phi': -85.55, 'psi': -140.12, 'strain': 0.737, 'linkage': '1-3'}, '3': {'phi': -76.19, 'psi': -138.08, 'strain': 0.657, 'linkage': '1-3'}, '4': {'phi': -85.29, 'psi': -101.08, 'strain': 0.912, 'linkage': '1-3'}, '5': {'phi': -85.78, 'psi': -108.17, 'strain': 0.912, 'linkage': '1-3'}, '6': {'phi': ... | {'GAL3-NAG4': {'2': {'phi': -85.55, 'psi': -140.12, 'strain': 0.737, 'linkage': '1-3'}, '3': {'phi': -76.2, 'psi': -138.11, 'strain': 0.657, 'linkage': '1-3'}, '4': {'phi': -85.29, 'psi': -101.0, 'strain': 0.912, 'linkage': '1-3'}, '5': {'phi': -85.81, 'psi': -108.17, 'strain': 0.912, 'linkage': '1-3'}, '6': {'phi': -7... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G30648VY'}]} | 7 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G30648VY', 'url': 'https://glycosmos.org/glycans/show/G30648VY'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Neo-lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G30648VY', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G30648... | {'id': '491847967', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491847967', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '2729', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '1301', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+1301', 'database': 'Carb... | 1,526.78 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 281 | Saccharide | HexNAc(2)Hex(4)dHex(1) % 1218.43851278 | freeEnd--?D-Glc--4b1D-Gal,p--3b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3b1D-GlcNAc,p--3b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Le... | {'related_accession': 'G02162RZ', 'relationship': 'ancestor'};{'related_accession': 'G05863AA', 'relationship': 'ancestor'};{'related_accession': 'G66678DU', 'relationship': 'ancestor'};{'related_accession': 'G82364UA', 'relationship': 'ancestor'};{'related_accession': 'G84032IV', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00304/snfg.svg | ./torsion_data/GS00304_torsion_data.txt | {'Cluster 0': {'count': 28979, '3_2_phi_mean': -74.62, '3_2_psi_mean': 108.77, '4_3_phi_mean': -76.06, '4_3_psi_mean': -66.12, '10_3_phi_mean': -81.01, '10_3_psi_mean': 113.03, '5_4_phi_mean': -65.0, '5_4_psi_mean': -112.78, '6_5_phi_mean': -84.62, '6_5_psi_mean': -78.21, '8_5_phi_mean': -79.81, '8_5_psi_mean': 102.68,... | G56845GO | GS00304 | DGalpb1-3DGlcpNAcb1-3[DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcpa1-OH | DGalpb1-3DGlcpNAcb1-3[DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcp | Gal(b1-3)GlcNAc(b1-3)[Gal(b1-4)GlcNAc(b1-6)]Gal(b1-4)Glc | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-D-Glc | WURCS=2.0/3,6,5/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2/a4-b1_b3-c1_b6-e1_c3-d1_e4-f1 | RES,1b:b-dglc-HEX-1:5,2b:b-dgal-HEX-1:5,3b:b-dglc-HEX-1:5,4s:n-acetyl,5b:b-dgal-HEX-1:5,6b:b-dglc-HEX-1:5,7s:n-acetyl,8b:b-dgal-HEX-1:5,LIN,1:1o(4+1)2d,2:2o(3+1)3d,3:3d(2+1)4n,4:3o(3+1)5d,5:2o(6+1)6d,6:6d(2+1)7n,7:6o(4+1)8d, | O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO | null | 1,072.38 | {'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'};{'motif': 'G00056MO', 'motif_label': 'Type 1 LN'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'} | Gal(b1-3);Gal(b1-4) | {'Gal': 3, 'GlcNAc': 2, 'Glc': 1} | {'Hex': 4, 'HexNAc': 2} | 18 | 20 | 31 | 13.292071 | {'Cluster 0': 32.2, 'Cluster 1': 21.68, 'Cluster 2': 18.22, 'Cluster 3': 16.27, 'Cluster 4': 11.64} | {'Cluster 0': 28.2372, 'Cluster 1': 13.3042, 'Cluster 2': 12.0966, 'Cluster 3': 6.1361, 'Cluster 4': 5.8505, 'Cluster 5': 5.7239, 'Cluster 6': 5.5606, 'Cluster 7': 3.8641, 'Cluster 8': 3.1652, 'Cluster 9': 2.7708, 'Cluster 10': 2.2531, 'Cluster 11': 1.7143, 'Cluster 12': 1.6509, 'Cluster 13': 1.4643, 'Cluster 14': 1.26... | {'2': 0.30362957637801335, '3': 0.38586477596230956, '4': 0.3550382664301384, '5': 0.31569723427375074, '6': 0.31747498754606934, '7': 0.31926161558048705, '8': 0.32301963184855853} | {'0': [2, 3, 6, 7, 16, 21], '1': [0], '2': [23, 24], '3': [4, 10, 11, 13, 18, 25], '4': [1, 5, 8, 9, 12, 14, 15, 17, 19, 20, 22, 26]} | {'explained_variance_ratio': [0.19702850212583334, 0.15460228283579858, 0.08190787315002787, 0.0459969501237469, 0.0363163499034066, 0.03468430023369319, 0.028179733051774264, 0.022911477143080464, 0.02206038606199139, 0.017378157923241273], 'cumulative_variance': [0.19702850212583334, 0.3516307849616319, 0.43353865811... | 3 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | DGalpb1-3DGlcpNAcb1-3[DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcpa1-OH | Gal(b1-3)GlcNAc(b1-3)[Gal(b1-4)GlcNAc(b1-6)]Gal(b1-4)Glc(a1- | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-α-D-Glcp-(1→ | G84760EJ | WURCS=2.0/3,6,5/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2/a4-b1_b3-c1_b6-e1_c3-d1_e4-f1 | DGalpb1-3DGlcpNAcb1-3[DGalpb1-4DGlcpNAcb1-6]DGalpb1-4DGlcpb1-OH | Gal(b1-3)GlcNAc(b1-3)[Gal(b1-4)GlcNAc(b1-6)]Gal(b1-4)Glc(b1- | β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Galp-(1→4)-β-D-Glcp-(1→ | G80393RT | WURCS=2.0/3,6,5/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2/a4-b1_b3-c1_b6-e1_c3-d1_e4-f1 | null | null | null | {'GAL3-NAG10': {'2': {'phi': -91.86, 'psi': -107.63, 'strain': 2.161, 'linkage': '1-3'}, '3': {'phi': -85.45, 'psi': -162.3, 'strain': 1.064, 'linkage': '1-3'}, '4': {'phi': -52.89, 'psi': -134.38, 'strain': 1.634, 'linkage': '1-3'}, '5': {'phi': -62.36, 'psi': -162.0, 'strain': 1.719, 'linkage': '1-3'}, '6': {'phi': -... | {'GAL3-NAG10': {'2': {'phi': -91.86, 'psi': -107.63, 'strain': 2.161, 'linkage': '1-3'}, '3': {'phi': -85.49, 'psi': -162.33, 'strain': 1.064, 'linkage': '1-3'}, '4': {'phi': -52.91, 'psi': -134.36, 'strain': 1.634, 'linkage': '1-3'}, '5': {'phi': -62.25, 'psi': -162.03, 'strain': 1.719, 'linkage': '1-3'}, '6': {'phi':... | {'GAL3-NAG10': {'2': {'phi': -91.86, 'psi': -107.63, 'strain': 2.161, 'linkage': '1-3'}, '3': {'phi': -85.45, 'psi': -162.3, 'strain': 1.064, 'linkage': '1-3'}, '4': {'phi': -52.89, 'psi': -134.38, 'strain': 1.634, 'linkage': '1-3'}, '5': {'phi': -62.36, 'psi': -162.0, 'strain': 1.719, 'linkage': '1-3'}, '6': {'phi': -... | {'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G56845GO'}]} | 6 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G56845GO', 'url': 'https://glycosmos.org/glycans/show/G56845GO'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'} | {'type': {'name': 'Glycosphingolipid'}, 'subtype': {'name': 'Lacto series'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G56845GO', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G56845... | {'id': '491856358', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491856358', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1669', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '11391', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+11391', 'database': 'Ca... | 1,352.69 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 328 | Saccharide | HexNAc(2)Hex(4) % 1072.38060391 | freeEnd--?D-Glc--4b1D-Gal,p(--3b1D-GlcNAc,p--3b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000005', 'name': 'Type 1 LN', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 1'} | {'related_accession': 'G12530CV', 'relationship': 'ancestor'};{'related_accession': 'G13912IG', 'relationship': 'ancestor'};{'related_accession': 'G51092SE', 'relationship': 'ancestor'};{'related_accession': 'G92050GC', 'relationship': 'ancestor'};{'related_accession': 'G92050GC', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00305/snfg.svg | ./torsion_data/GS00305_torsion_data.txt | {'Cluster 0': {'count': 10002, '3_2_phi_mean': -79.91, '3_2_psi_mean': -75.09, '4_3_phi_mean': -74.81, '4_3_psi_mean': -116.64, '3_2_phi_std': 15.36, '3_2_psi_std': 15.22, '4_3_phi_std': 12.31, '4_3_psi_std': 16.8}, 'Cluster 1': {'count': 9411, '3_2_phi_mean': -81.87, '3_2_psi_mean': -119.99, '4_3_phi_mean': -73.1, '4_... | G02657CQ | GS00305 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-OH | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManp | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)Man | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-D-Man | WURCS=2.0/4,4,3/[u1122h][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a2-b1_b4-c1_c3-d2 | RES,1b:b-dman-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:b-dgal-HEX-1:5,5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d,6s:n-acetyl,LIN,1:1o(2+1)2d,2:2d(2+1)3n,3:2o(4+1)4d,4:4o(3+2)5d,5:5d(5+1)6n, | O1C(O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@]4(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O4)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H](O)[C@H]1CO | null | 836.29 | {'motif': 'G00065MO', 'motif_label': 'Polysialic acid'} | Neu5Ac(a2-3) | {'Neu5Ac': 1, 'Gal': 1, 'GlcNAc': 1, 'Man': 1} | {'Hex': 2, 'HexNAc': 1, 'Neu5Ac': 1} | 15 | 16 | 24 | 10.934458 | {'Cluster 0': 25.0, 'Cluster 1': 23.53, 'Cluster 2': 21.96, 'Cluster 3': 21.89, 'Cluster 4': 7.62} | {'Cluster 0': 27.9622, 'Cluster 1': 21.5953, 'Cluster 2': 14.681, 'Cluster 3': 11.7038, 'Cluster 4': 7.5892, 'Cluster 5': 7.5342, 'Cluster 6': 2.3273, 'Cluster 7': 1.5423, 'Cluster 8': 1.3949, 'Cluster 9': 1.2649, 'Cluster 10': 0.8474, 'Cluster 11': 0.5549, 'Cluster 12': 0.38, 'Cluster 13': 0.23, 'Cluster 14': 0.1825, ... | {'2': 0.37488441843938747, '3': 0.3809923026552169, '4': 0.36754628944703854, '5': 0.3094525265434731, '6': 0.28454680213837785, '7': 0.22086582653582004, '8': 0.26481237125643764} | {'0': [2, 3, 7, 9, 11, 14], '1': [4, 10], '2': [1, 5, 6, 8, 12, 15], '3': [0, 13, 16], '4': []} | {'explained_variance_ratio': [0.18215425833474522, 0.1068520049321035, 0.07786889156406586, 0.06582198352212915, 0.04168163141486467, 0.033217764239841456, 0.027494689998372426, 0.02656334719880158, 0.02496913404670166, 0.020678363058383997], 'cumulative_variance': [0.18215425833474522, 0.28900626326684875, 0.366875154... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)Man(a1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→ | G59126YU | WURCS=2.0/4,4,3/[a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a2-b1_b4-c1_c3-d2 | DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpb1-OH | Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)Man(b1- | α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-β-D-Manp-(1→ | G92423MT | WURCS=2.0/4,4,3/[a1122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a2-b1_b4-c1_c3-d2 | null | null | null | {'MAN2-NAG3': {'2': {'phi': -83.03, 'psi': -70.35, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -59.13, 'psi': -133.44, 'strain': 2.954, 'linkage': '1-2'}, '4': {'phi': -68.15, 'psi': -72.61, 'strain': 0.558, 'linkage': '1-2'}, '5': {'phi': -68.55, 'psi': -80.12, 'strain': 0.758, 'linkage': '1-2'}, '6': {'phi': -54.... | {'MAN2-NAG3': {'2': {'phi': -83.03, 'psi': -70.35, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -59.15, 'psi': -133.41, 'strain': 2.954, 'linkage': '1-2'}, '4': {'phi': -68.17, 'psi': -72.62, 'strain': 0.558, 'linkage': '1-2'}, '5': {'phi': -68.51, 'psi': -80.14, 'strain': 0.758, 'linkage': '1-2'}, '6': {'phi': -54.... | {'MAN2-NAG3': {'2': {'phi': -83.03, 'psi': -70.35, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -59.13, 'psi': -133.44, 'strain': 2.954, 'linkage': '1-2'}, '4': {'phi': -68.15, 'psi': -72.61, 'strain': 0.558, 'linkage': '1-2'}, '5': {'phi': -68.55, 'psi': -80.12, 'strain': 0.758, 'linkage': '1-2'}, '6': {'phi': -54.... | null | 4 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G59126YU', 'url': 'https://www.glygen.org/glycan/G59126YU'}], 'common_name': 'Bovine', 'glygen_name': 'Bovine', 'reference_species': 'Bos taurus [9913]'};{'taxid': 9606, 'name': 'Homo sapiens', 'a... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'O-mannose core'}} | {'uniprot_canonical_ac': 'Q8BGQ4-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G02657CQ', 'protein_name': 'Protein O-mannosyl-transferase 2', 'gene': 'Pomt2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BGQ4', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G02657C... | {'id': '491929823', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491929823', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G02657CQ', 'url': 'https://glytoucan.org/Structures/Glycans/G02657CQ', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G02657CQ', 'url': 'https://sandbox.... | 1,060.54 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(1)Hex(2)NeuAc(1) % 836.29100094 | freeEnd--?D-Man--2b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000034', 'name': '3-Sialyl-LN (type 2)', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000055', 'name': 'O-Linked mannose'} | {'related_accession': 'G08961BG', 'relationship': 'ancestor'};{'related_accession': 'G16036RF', 'relationship': 'ancestor'};{'related_accession': 'G38025DM', 'relationship': 'ancestor'};{'related_accession': 'G38037QN', 'relationship': 'ancestor'};{'related_accession': 'G55677NY', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00306/snfg.svg | ./torsion_data/GS00306_torsion_data.txt | {'Cluster 0': {'count': 14299, '3_2_phi_mean': -81.58, '3_2_psi_mean': -72.28, '4_3_phi_mean': -71.66, '4_3_psi_mean': -121.96, '3_2_phi_std': 15.2, '3_2_psi_std': 10.76, '4_3_phi_std': 10.79, '4_3_psi_std': 16.98}, 'Cluster 1': {'count': 5960, '3_2_phi_mean': -79.08, '3_2_psi_mean': -92.86, '4_3_phi_mean': -72.28, '4_... | G23707SD | GS00306 | DGalpb1-4DGlcpNAcb1-2DManpa1-OH | DGalpb1-4DGlcpNAcb1-2DManp | Gal(b1-4)GlcNAc(b1-2)Man | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-D-Man | WURCS=2.0/3,3,2/[u1122h][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3/a2-b1_b4-c1 | RES,1b:b-dman-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:b-dgal-HEX-1:5,LIN,1:1o(2+1)2d,2:2d(2+1)3n,3:2o(4+1)4d, | O1C(O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H](O)[C@H]1CO | null | 545.2 | {'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Gal(b1-4) | {'Gal': 1, 'GlcNAc': 1, 'Man': 1} | {'Hex': 2, 'HexNAc': 1} | 8 | 11 | 16 | 10.037612 | {'Cluster 0': 47.66, 'Cluster 1': 19.86, 'Cluster 2': 16.82, 'Cluster 3': 11.65, 'Cluster 4': 4.01} | {'Cluster 0': 37.7662, 'Cluster 1': 25.7441, 'Cluster 2': 14.4152, 'Cluster 3': 11.9155, 'Cluster 4': 7.4459, 'Cluster 5': 0.7899, 'Cluster 6': 0.6699, 'Cluster 7': 0.4833, 'Cluster 8': 0.4233, 'Cluster 9': 0.1533, 'Cluster 10': 0.1367, 'Cluster 11': 0.0233, 'Cluster 12': 0.0233, 'Cluster 13': 0.01} | {'2': 0.4113737460360487, '3': 0.4114449296091686, '4': 0.29212792673616655, '5': 0.2452249838357851, '6': 0.22719280109292672, '7': 0.23322719083527854, '8': 0.22269275392172672} | {'0': [], '1': [4, 13], '2': [1, 2, 3, 5, 8, 9, 12], '3': [6, 7, 11], '4': [0, 10]} | {'explained_variance_ratio': [0.14099315303335555, 0.09545057818305874, 0.0752981405089027, 0.058912484350863076, 0.05501037371441446, 0.04354958955737581, 0.03378337991575797, 0.027530478627609607, 0.02529530309218095, 0.021024917768266586], 'cumulative_variance': [0.14099315303335555, 0.2364437312164143, 0.3117418717... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2DManpa1-OH | Gal(b1-4)GlcNAc(b1-2)Man(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→ | G28052FT | WURCS=2.0/3,3,2/[a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3/a2-b1_b4-c1 | DGalpb1-4DGlcpNAcb1-2DManpb1-OH | Gal(b1-4)GlcNAc(b1-2)Man(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-β-D-Manp-(1→ | G63348GG | WURCS=2.0/3,3,2/[a1122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3/a2-b1_b4-c1 | null | null | null | {'MAN2-NAG3': {'2': {'phi': -82.05, 'psi': -83.56, 'strain': 0.373, 'linkage': '1-2'}, '3': {'phi': -77.92, 'psi': -86.62, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -73.86, 'psi': -131.74, 'strain': 2.369, 'linkage': '1-2'}, '5': {'phi': -84.12, 'psi': -83.59, 'strain': 0.373, 'linkage': '1-2'}, '6': {'phi': -76... | {'MAN2-NAG3': {'2': {'phi': -82.05, 'psi': -83.56, 'strain': 0.373, 'linkage': '1-2'}, '3': {'phi': -77.79, 'psi': -86.71, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -73.73, 'psi': -131.76, 'strain': 2.369, 'linkage': '1-2'}, '5': {'phi': -84.17, 'psi': -83.59, 'strain': 0.373, 'linkage': '1-2'}, '6': {'phi': -76... | {'MAN2-NAG3': {'2': {'phi': -82.05, 'psi': -83.56, 'strain': 0.373, 'linkage': '1-2'}, '3': {'phi': -77.92, 'psi': -86.62, 'strain': 0.234, 'linkage': '1-2'}, '4': {'phi': -73.86, 'psi': -131.74, 'strain': 2.369, 'linkage': '1-2'}, '5': {'phi': -84.12, 'psi': -83.59, 'strain': 0.373, 'linkage': '1-2'}, '6': {'phi': -76... | {'taxon_id': '10090', 'taxon_label': 'Mus musculus (house mouse)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G23707SD'}]};{'taxon_id': '9606', 'taxon_label': 'Homo sapiens (human)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G237... | 3 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'both', 'evidence': [{'database': 'GlyCosmos', 'id': 'G23707SD', 'url': 'https://glycosmos.org/glycans/show/G23707SD'}, {'database': 'Subsumption', 'id': 'G28052FT', 'url': 'https://www.glygen.org/glycan/G28052FT'}, {'database': 'Subsumption', 'id': 'G87860... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'O-mannose core'}} | {'uniprot_canonical_ac': 'Q8BGQ4-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G23707SD', 'protein_name': 'Protein O-mannosyl-transferase 2', 'gene': 'Pomt2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BGQ4', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G23707S... | {'id': '491845717', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491845717', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1249', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '11021', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+11021', 'database': 'Ca... | 699.37 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 656 | Saccharide | HexNAc(1)Hex(2) % 545.195584305 | freeEnd--?D-Man--2b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G03102IC', 'relationship': 'ancestor'};{'related_accession': 'G05394UY', 'relationship': 'ancestor'};{'related_accession': 'G08583SH', 'relationship': 'ancestor'};{'related_accession': 'G14769XS', 'relationship': 'ancestor'};{'related_accession': 'G32977PZ', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00307/snfg.svg | ./torsion_data/GS00307_torsion_data.txt | {'Cluster 0': {'count': 14831, '3_2_phi_mean': -79.82, '3_2_psi_mean': -74.74, '4_3_phi_mean': -68.03, '4_3_psi_mean': -107.95, '5_3_phi_mean': -69.49, '5_3_psi_mean': 142.2, '3_2_phi_std': 18.05, '3_2_psi_std': 12.6, '4_3_phi_std': 7.91, '4_3_psi_std': 7.09, '5_3_phi_std': 9.03, '5_3_psi_std': 7.44}, 'Cluster 1': {'co... | G40707RU | GS00307 | DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-OH | DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManp | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-D-Man | WURCS=2.0/4,4,3/[u1122h][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4/a2-b1_b3-c1_b4-d1 | RES,1b:b-dman-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:a-lgal-HEX-1:5|6:d,5b:b-dgal-HEX-1:5,LIN,1:1o(2+1)2d,2:2d(2+1)3n,3:2o(3+1)4d,4:2o(4+1)5d, | O1C(O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H](O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H]2NC(C)=O)[C@@H](O)[C@H](O)[C@H]1CO | null | 691.25 | {'motif': 'G01187XC', 'motif_label': 'Lex'};{'motif': 'G01187XC', 'motif_label': 'Lewis x'};{'motif': 'G01187XC', 'motif_label': 'SSEA-1'};{'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Fuc(a1-3);Gal(b1-4) | {'Fuc': 1, 'Gal': 1, 'GlcNAc': 1, 'Man': 1} | {'Hex': 2, 'HexNAc': 1, 'dHex': 1} | 10 | 13 | 20 | 9.007511 | {'Cluster 0': 49.43, 'Cluster 1': 18.83, 'Cluster 2': 14.25, 'Cluster 3': 10.93, 'Cluster 4': 6.56} | {'Cluster 0': 51.7315, 'Cluster 1': 20.7146, 'Cluster 2': 10.499, 'Cluster 3': 6.3694, 'Cluster 4': 3.423, 'Cluster 5': 2.6864, 'Cluster 6': 2.6031, 'Cluster 7': 0.9699, 'Cluster 8': 0.8466, 'Cluster 9': 0.14, 'Cluster 10': 0.0167} | {'2': 0.7259668730012944, '3': 0.5077090145499069, '4': 0.46501497340905723, '5': 0.43241990440241374, '6': 0.43844528137103855, '7': 0.3539422026519727, '8': 0.33699880326421} | {'0': [5, 10], '1': [4, 6, 9], '2': [0], '3': [1, 2, 8], '4': [3, 7]} | {'explained_variance_ratio': [0.38169598118753156, 0.08083016225173366, 0.0455232109592348, 0.034801350010687016, 0.02549333693951075, 0.02139353027233819, 0.020223920072638228, 0.016867247286816156, 0.016526787930654728, 0.014731955743978552], 'cumulative_variance': [0.38169598118753156, 0.46252614343926524, 0.5080493... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→ | G81516LH | WURCS=2.0/4,4,3/[a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4/a2-b1_b3-c1_b4-d1 | DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpb1-OH | Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(b1- | β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-β-D-Manp-(1→ | G31377ER | WURCS=2.0/4,4,3/[a1122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4/a2-b1_b3-c1_b4-d1 | null | null | null | {'MAN2-NAG3': {'2': {'phi': -86.12, 'psi': -74.22, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -74.45, 'psi': -119.4, 'strain': 1.425, 'linkage': '1-2'}, '4': {'phi': -71.16, 'psi': -128.51, 'strain': 1.534, 'linkage': '1-2'}, '5': {'phi': -57.92, 'psi': -69.15, 'strain': 1.644, 'linkage': '1-2'}, '6': {'phi': -60.... | {'MAN2-NAG3': {'2': {'phi': -86.12, 'psi': -74.22, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -74.44, 'psi': -119.42, 'strain': 1.425, 'linkage': '1-2'}, '4': {'phi': -71.15, 'psi': -128.54, 'strain': 1.534, 'linkage': '1-2'}, '5': {'phi': -57.85, 'psi': -69.21, 'strain': 1.644, 'linkage': '1-2'}, '6': {'phi': -60... | {'MAN2-NAG3': {'2': {'phi': -86.12, 'psi': -74.22, 'strain': -0.0, 'linkage': '1-2'}, '3': {'phi': -74.45, 'psi': -119.4, 'strain': 1.425, 'linkage': '1-2'}, '4': {'phi': -71.16, 'psi': -128.51, 'strain': 1.534, 'linkage': '1-2'}, '5': {'phi': -57.92, 'psi': -69.15, 'strain': 1.644, 'linkage': '1-2'}, '6': {'phi': -60.... | {'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G40707RU'}]};{'taxon_id': '562', 'taxon_label': 'Escherichia coli', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G40707RU... | 4 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G40707RU', 'url': 'https://glycosmos.org/glycans/show/G40707RU'}], 'common_name': 'Bovine', 'glygen_name': 'Bovine', 'reference_species': 'Bos taurus [9913]'};{'taxid': 9606, 'name': 'Homo sapiens', 'ann... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'O-mannose core'}} | {'uniprot_canonical_ac': 'Q8BGQ4-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G40707RU', 'protein_name': 'Protein O-mannosyl-transferase 2', 'gene': 'Pomt2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BGQ4', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G40707R... | {'id': '491851272', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491851272', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1493', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '13889', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+13889', 'database': 'Ca... | 873.46 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | HexNAc(1)Hex(2)dHex(1) % 691.253493175 | freeEnd--?D-Man--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000018', 'name': 'Lewis x', 'synonym': 'Le^x; Lex; SSEA-1', 'keywords': 'Lewis x'};{'id': 'GGM.000057', 'name': 'O-Mannose Lex', 'synonym': 'O-Mannose Le^x', 'ke... | {'related_accession': 'G11235SR', 'relationship': 'ancestor'};{'related_accession': 'G16317CO', 'relationship': 'ancestor'};{'related_accession': 'G19106OF', 'relationship': 'ancestor'};{'related_accession': 'G20045AQ', 'relationship': 'ancestor'};{'related_accession': 'G21622VG', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 2}, {'field': 'total_sites', 'count': 0}], 'sort_fields': ['category', 'tissue.name', 'tissue.namespace', 'tissue.id', 'tissue.url', ... | {'type': 'added', 'description': 'introduced in data release 1.0.13'} |
./raw_dataGS00308/snfg.svg | ./torsion_data/GS00308_torsion_data.txt | {'Cluster 0': {'count': 12112, '3_2_phi_mean': -73.08, '3_2_psi_mean': -73.05, '3_2_phi_std': 13.74, '3_2_psi_std': 11.89}, 'Cluster 1': {'count': 7727, '3_2_phi_mean': -91.2, '3_2_psi_mean': -76.15, '3_2_phi_std': 11.82, '3_2_psi_std': 8.76}, 'Cluster 2': {'count': 4902, '3_2_phi_mean': -87.33, '3_2_psi_mean': -131.29... | G02609KH | GS00308 | DGlcpNAcb1-2DManpa1-OH | DGlcpNAcb1-2DManp | GlcNAc(b1-2)Man | β-D-GlcpNAc-(1→2)-D-Man | WURCS=2.0/2,2,1/[u1122h][a2122h-1b_1-5_2*NCC/3=O]/1-2/a2-b1 | RES,1b:b-dman-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,LIN,1:1o(2+1)2d,2:2d(2+1)3n, | O1C(O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H](O)[C@H]1CO | null | 383.14 | null | GlcNAc(b1-2) | {'GlcNAc': 1, 'Man': 1} | {'Hex': 1, 'HexNAc': 1} | 5 | 8 | 11 | 8.897062 | {'Cluster 0': 40.37, 'Cluster 1': 25.75, 'Cluster 2': 16.34, 'Cluster 3': 13.42, 'Cluster 4': 4.12} | {'Cluster 0': 58.3175, 'Cluster 1': 17.1316, 'Cluster 2': 13.6553, 'Cluster 3': 4.5095, 'Cluster 4': 2.7831, 'Cluster 5': 2.7431, 'Cluster 6': 0.4866, 'Cluster 7': 0.2033, 'Cluster 8': 0.1333, 'Cluster 9': 0.03, 'Cluster 10': 0.0067} | {'2': 0.43282200420718026, '3': 0.33689780139214787, '4': 0.2947029868094001, '5': 0.2368979797844251, '6': 0.23356258536236116, '7': 0.23111370351850885, '8': 0.24283662798840003} | {'0': [2, 4, 5, 8], '1': [0], '2': [1, 3, 7, 9, 10], '3': [6], '4': []} | {'explained_variance_ratio': [0.1756591899780783, 0.09174732721545512, 0.07211133801495914, 0.05215732125086867, 0.044847979338499426, 0.03770253845269454, 0.03421997493304118, 0.02732463927109074, 0.02320874580475857, 0.02097201918014558], 'cumulative_variance': [0.1756591899780783, 0.2674065171935334, 0.3395178552084... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 200 | DGlcpNAcb1-2DManpa1-OH | GlcNAc(b1-2)Man(a1- | β-D-GlcpNAc-(1→2)-α-D-Manp-(1→ | G85856KC | WURCS=2.0/2,2,1/[a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2/a2-b1 | DGlcpNAcb1-2DManpb1-OH | GlcNAc(b1-2)Man(b1- | β-D-GlcpNAc-(1→2)-β-D-Manp-(1→ | G43534QA | WURCS=2.0/2,2,1/[a1122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2/a2-b1 | null | null | null | {'MAN2-NAG3': {'2': {'phi': -65.99, 'psi': -76.29, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -93.8, 'psi': -78.09, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -70.6, 'psi': -129.92, 'strain': 1.534, 'linkage': '1-2'}, '5': {'phi': -75.14, 'psi': -81.48, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': 66.38... | {'MAN2-NAG3': {'2': {'phi': -65.99, 'psi': -76.29, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -93.89, 'psi': -78.05, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -70.56, 'psi': -129.94, 'strain': 1.534, 'linkage': '1-2'}, '5': {'phi': -75.12, 'psi': -81.53, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': 66.... | {'MAN2-NAG3': {'2': {'phi': -65.99, 'psi': -76.29, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -93.8, 'psi': -78.09, 'strain': 0.326, 'linkage': '1-2'}, '4': {'phi': -70.6, 'psi': -129.92, 'strain': 1.534, 'linkage': '1-2'}, '5': {'phi': -75.14, 'psi': -81.48, 'strain': 0.234, 'linkage': '1-2'}, '6': {'phi': 66.38... | null | 2 | {'taxid': 9606, 'name': 'Homo sapiens', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G85856KC', 'url': 'https://www.glygen.org/glycan/G85856KC'}], 'common_name': 'Human', 'glygen_name': 'Human', 'reference_species': 'Homo sapiens [9606]'};{'taxid': 10090, 'name': 'Mus musculus',... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'Q8BGQ4-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G02609KH', 'protein_name': 'Protein O-mannosyl-transferase 2', 'gene': 'Pomt2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BGQ4', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G02609K... | {'id': '491929817', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491929817', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G02609KH', 'url': 'https://glytoucan.org/Structures/Glycans/G02609KH', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G02609KH', 'url': 'https://sandbox.... | 495.27 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 984 | Saccharide | HexNAc(1)Hex(1) % 383.142760805 | freeEnd--?D-Man--2b1D-GlcNAc,p$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G21639YY', 'relationship': 'ancestor'};{'related_accession': 'G32171CW', 'relationship': 'ancestor'};{'related_accession': 'G34861JV', 'relationship': 'ancestor'};{'related_accession': 'G41305SW', 'relationship': 'ancestor'};{'related_accession': 'G43417UB', 'relationship': 'ancestor'};{'related_... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00311/snfg.svg | ./torsion_data/GS00311_torsion_data.txt | {} | G80753ZP | GS00311 | DGlcpb1-OH | DGlcp | Glc | D-Glc | WURCS=2.0/1,1,0/[u2122h]/1/ | RES 1b:b-dglc-HEX-1:5 | O1C(O)[C@H](O)[C@@H](O)[C@H](O)[C@H]1CO | null | 180.06 | null | null | {'Glc': 1} | {'Hex': 1} | 1 | 5 | 6 | 6.557115 | {'Cluster 0': 25.71, 'Cluster 1': 25.5, 'Cluster 2': 24.99, 'Cluster 3': 23.46, 'Cluster 4': 0.35} | {'Cluster 0': 45.5554, 'Cluster 1': 39.2861, 'Cluster 2': 14.9285, 'Cluster 3': 0.09, 'Cluster 4': 0.07, 'Cluster 5': 0.05, 'Cluster 6': 0.02} | {'2': 0.17280297084040955, '3': 0.2855195376329081, '4': 0.23644455939495732, '5': 0.25002638541298494, '6': 0.22052479757850993, '7': 0.24846463943941804, '8': 0.25383934816909565} | {'0': [5], '1': [3], '2': [0], '3': [], '4': [1, 2, 4, 6]} | {'explained_variance_ratio': [0.11133271229673951, 0.08470096246644311, 0.07682266155224794, 0.07245037734529575, 0.06338955837185643, 0.05146375829591201, 0.04795885471019277, 0.04544104229557478, 0.040632899466729766, 0.03777751634170484], 'cumulative_variance': [0.11133271229673951, 0.19603367476318262, 0.2728563363... | 0 | null | null | null | null | null | DGlcpa1-OH | Glc(a1- | α-D-Glcp-(1→ | G58161NS | WURCS=2.0/1,1,0/[a2122h-1a_1-5]/1/ | DGlcpb1-OH | Glc(b1- | β-D-Glcp-(1→ | G71142DF | WURCS=2.0/1,1,0/[a2122h-1b_1-5]/1/ | null | null | null | {} | {} | {} | {'taxon_id': '198691', 'taxon_label': 'Alstroemeria revoluta', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G80753ZP'}]};{'taxon_id': '41496', 'taxon_label': 'Calendula officinalis', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G80753... | 1 | {'taxid': 10029, 'name': 'Cricetulus griseus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G15021LG', 'url': 'https://www.glygen.org/glycan/G15021LG'}], 'common_name': 'Chinese hamster', 'glygen_name': 'Hamster', 'reference_species': 'Cricetulus griseus [10029]'};{'taxid': 9606... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | {'uniprot_canonical_ac': 'G5E897-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G80753ZP', 'protein_name': 'Protein O-glucosyltransferase 3', 'gene': 'Poglut3', 'gene_link': 'https://www.uniprot.org/uniprot/G5E897', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G80753... | {'id': '491863929', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491863929', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '10090', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '18254', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '18263', ... | 250.14 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 1,969 | Composition | Hex(1) % 180.0633882 | freeEnd--?D-Glc$MONO,Und,0,0,freeEnd | {'id': 'GGM.000060', 'name': 'Glucosylceramide', 'keywords': 'Glycolipid'} | {'related_accession': 'G09675LS', 'relationship': 'ancestor'};{'related_accession': 'G81399MY', 'relationship': 'ancestor'};{'related_accession': 'G84342AD', 'relationship': 'ancestor'};{'related_accession': 'G81399MY', 'relationship': 'basecomposition'};{'related_accession': 'G80753ZP', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00312/snfg.svg | ./torsion_data/GS00312_torsion_data.txt | {} | G75592IR | GS00312 | DXylpb1-OH | DXylp | Xyl | D-Xyl | WURCS=2.0/1,1,0/[u212h]/1/ | RES 1b:x-dxyl-PEN-1:5 | O1C[C@@H](O)[C@H](O)[C@@H](O)C1O | null | 150.05 | null | null | {'Xyl': 1} | {'Pen': 1} | 0 | 4 | 5 | 4.677685 | {} | {} | {'2': 0.7059164186290671, '3': 0.25517466976009284, '4': 0.3016457335072286, '5': 0.3289215092006447, '6': 0.19845865654223144, '7': 0.18809024636813804, '8': 0.21644541596225933} | {'0': [1, 3, 4], '1': [0], '2': [], '3': [], '4': [2]} | {'explained_variance_ratio': [0.3834119578888727, 0.06409005979412272, 0.05492396680215235, 0.05270876417714252, 0.045526200310891066, 0.04341768180551804, 0.03905842541042686, 0.036915834068837694, 0.0316803692744385, 0.029802500697709743], 'cumulative_variance': [0.3834119578888727, 0.44750201768299547, 0.50242598448... | 0 | null | null | null | null | null | DXylpa1-OH | Xyl(a1- | α-D-Xylp-(1→ | G03144EF | WURCS=2.0/1,1,0/[a212h-1a_1-5]/1/ | DXylpb1-OH | Xyl(b1- | β-D-Xylp-(1→ | G16579HJ | WURCS=2.0/1,1,0/[a212h-1b_1-5]/1/ | null | null | null | {} | {} | {} | null | 1 | {'taxid': 10029, 'name': 'Cricetulus griseus', 'annotation_category': 'subsumption', 'evidence': [{'database': 'Subsumption', 'id': 'G16579HJ', 'url': 'https://www.glygen.org/glycan/G16579HJ'}], 'common_name': 'Chinese hamster', 'glygen_name': 'Hamster', 'reference_species': 'Cricetulus griseus [10029]'};{'taxid': 1011... | {'type': {'name': 'Other'}, 'subtype': {'name': 'Other'}} | null | {'id': '491862266', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491862266', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G75592IR', 'url': 'https://glytoucan.org/Structures/Glycans/G75592IR', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G75592IR', 'url': 'https://gnome.gl... | 206.12 | {'gnome_glygen_oglycans': 'no', 'sandbox': 'no', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'no', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 1,969 | Composition | Pent(1) % 150.0528235 | freeEnd--?D-Xyl$MONO,Und,0,0,freeEnd | null | {'related_accession': 'G47957HH', 'relationship': 'ancestor'};{'related_accession': 'G86655RF', 'relationship': 'ancestor'};{'related_accession': 'G47957HH', 'relationship': 'basecomposition'};{'related_accession': 'G75592IR', 'relationship': 'composition'};{'related_accession': 'G00123JF', 'relationship': 'descendant'... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
./raw_dataGS00313/snfg.svg | ./torsion_data/GS00313_torsion_data.txt | {'Cluster 0': {'count': 12415, '3_2_phi_mean': -80.69, '3_2_psi_mean': -79.07, '4_3_phi_mean': -71.84, '4_3_psi_mean': -120.43, '5_4_phi_mean': -76.54, '5_4_psi_mean': 81.07, '3_2_phi_std': 19.52, '3_2_psi_std': 17.73, '4_3_phi_std': 10.9, '4_3_psi_std': 18.47, '5_4_phi_std': 13.92, '5_4_psi_std': 17.17}, 'Cluster 1': ... | G57941GW | GS00313 | DGlcpA[3S]b1-3DGalpb1-4DGlcpNAcb1-2DManpa1-OH | DGlcpA[3S]b1-3DGalpb1-4DGlcpNAcb1-2DManp | GlcA3S(b1-3)Gal(b1-4)GlcNAc(b1-2)Man | β-D-GlcpA3S-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-D-Man | WURCS=2.0/4,4,3/[u1122h][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122A-1b_1-5_3*OSO/3=O/3=O]/1-2-3-4/a2-b1_b4-c1_c3-d1 | RES,1b:b-dman-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:b-dgal-HEX-1:5,5b:b-dglc-HEX-1:5,6s:sulfate,LIN,1:1o(2+1)2d,2:2d(2+1)3n,3:2o(4+1)4d,4:4o(3+1)5d,5:5o(3+1)6n, | O1C(O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](C(=O)O)[C@@H](O)[C@H](OS(=O)(=O)O)[C@H]4O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H](O)[C@H]1CO | null | 801.18 | {'motif': 'G53277CD', 'motif_label': 'HNK-1 antigen'} | GlcA3S(b1-3) | {'GlcA3S': 1, 'Gal': 1, 'GlcNAc': 1, 'Man': 1} | {'Hex': 2, 'HexA': 1, 'HexNAc': 1, 'S': 1} | 13 | 14 | 25 | 10.321918 | {'Cluster 0': 41.38, 'Cluster 1': 25.98, 'Cluster 2': 13.65, 'Cluster 3': 12.48, 'Cluster 4': 6.52} | {'Cluster 0': 39.596, 'Cluster 1': 18.1982, 'Cluster 2': 15.9884, 'Cluster 3': 11.4589, 'Cluster 4': 9.1991, 'Cluster 5': 1.2665, 'Cluster 6': 1.2065, 'Cluster 7': 1.0566, 'Cluster 8': 0.9899, 'Cluster 9': 0.4866, 'Cluster 10': 0.3366, 'Cluster 11': 0.0967, 'Cluster 12': 0.05, 'Cluster 13': 0.0367, 'Cluster 14': 0.0333... | {'2': 0.4896728859676087, '3': 0.4887050784175392, '4': 0.412000158948961, '5': 0.32030934550683965, '6': 0.25680236330094625, '7': 0.2679796274468037, '8': 0.2583156564751842} | {'0': [5, 10], '1': [11, 13], '2': [0, 7, 8], '3': [1, 2, 3, 4, 9, 12, 14], '4': [6]} | {'explained_variance_ratio': [0.14378426332868918, 0.09749653372531966, 0.08010455075060645, 0.0786027222767778, 0.04898310474329268, 0.03798493376421471, 0.0361405342175247, 0.030596241961378518, 0.023534843045840526, 0.02037433630844112], 'cumulative_variance': [0.14378426332868918, 0.24128079705400884, 0.32138534780... | 1.5 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGlcpA[3S]b1-3DGalpb1-4DGlcpNAcb1-2DManpa1-OH | GlcA3S(b1-3)Gal(b1-4)GlcNAc(b1-2)Man(a1- | β-D-GlcpA3S-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→ | G06898ZN | WURCS=2.0/4,4,3/[a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122A-1b_1-5_3*OSO/3=O/3=O]/1-2-3-4/a2-b1_b4-c1_c3-d1 | DGlcpA[3S]b1-3DGalpb1-4DGlcpNAcb1-2DManpb1-OH | GlcA3S(b1-3)Gal(b1-4)GlcNAc(b1-2)Man(b1- | β-D-GlcpA3S-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-β-D-Manp-(1→ | G55005SM | WURCS=2.0/4,4,3/[a1122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122A-1b_1-5_3*OSO/3=O/3=O]/1-2-3-4/a2-b1_b4-c1_c3-d1 | null | null | GAG | {'MAN2-NAG3': {'2': {'phi': -72.89, 'psi': -74.09, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -68.01, 'psi': -83.55, 'strain': 0.758, 'linkage': '1-2'}, '4': {'phi': -89.13, 'psi': -70.77, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -62.48, 'psi': -80.14, 'strain': 0.758, 'linkage': '1-2'}, '6': {'phi': -71.4... | {'MAN2-NAG3': {'2': {'phi': -72.89, 'psi': -74.09, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -68.06, 'psi': -83.58, 'strain': 0.758, 'linkage': '1-2'}, '4': {'phi': -89.21, 'psi': -70.68, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -62.38, 'psi': -80.14, 'strain': 0.758, 'linkage': '1-2'}, '6': {'phi': -71.4... | {'MAN2-NAG3': {'2': {'phi': -72.89, 'psi': -74.09, 'strain': 0.143, 'linkage': '1-2'}, '3': {'phi': -68.01, 'psi': -83.55, 'strain': 0.758, 'linkage': '1-2'}, '4': {'phi': -89.13, 'psi': -70.77, 'strain': -0.0, 'linkage': '1-2'}, '5': {'phi': -62.48, 'psi': -80.14, 'strain': 0.758, 'linkage': '1-2'}, '6': {'phi': -71.4... | null | 4 | null | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'O-mannose core'}} | {'uniprot_canonical_ac': 'Q8BGQ4-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G57941GW', 'protein_name': 'Protein O-mannosyl-transferase 2', 'gene': 'Pomt2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BGQ4', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G57941G... | {'id': '491954242', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491954242', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': 'G57941GW', 'url': 'https://glytoucan.org/Structures/Glycans/G57941GW', 'database': 'GlyTouCan', 'categories': ['Glycomics']};{'id': 'G57941GW', 'url': 'https://sandbox.... | 983.39 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 492 | Saccharide | null | freeEnd--?D-Man--2b1D-GlcNAc,p--4b1D-Gal,p--3b1D-GlcA,p--3S$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'};{'id': 'GGM.000058', 'name': 'HNK-1 antigen'};{'id': 'GGM.000059', 'name': 'HNK-1 on O-mannose'} | {'related_accession': 'G14266EJ', 'relationship': 'ancestor'};{'related_accession': 'G16274GJ', 'relationship': 'ancestor'};{'related_accession': 'G82208GO', 'relationship': 'ancestor'};{'related_accession': 'G92358TX', 'relationship': 'ancestor'};{'related_accession': 'G92358TX', 'relationship': 'basecomposition'};{'r... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 2.0.3'} |
./raw_dataGS00314/snfg.svg | ./torsion_data/GS00314_torsion_data.txt | {'Cluster 0': {'count': 13015, '3_2_phi_mean': -69.64, '3_2_psi_mean': 130.86, '6_2_phi_mean': -70.67, '6_2_psi_mean': -97.76, '3_2_phi_std': 8.2, '3_2_psi_std': 6.89, '6_2_phi_std': 11.8, '6_2_psi_std': 8.39}, 'Cluster 1': {'count': 9804, '3_2_phi_mean': -67.93, '3_2_psi_mean': 129.89, '6_2_phi_mean': -70.48, '6_2_psi... | G65204RX | GS00314 | DNeup5Ac[9A]a2-3DGalpb1-4[LFucpa1-3]DGlcpNAca1-OH | DNeup5Ac[9A]a2-3DGalpb1-4[LFucpa1-3]DGlcpNAc | Neu5Ac9Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc | α-D-Neup5Ac9Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-D-GlcNAc | WURCS=2.0/4,4,3/[u2122h_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O_9*OCC/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2 | null | O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)COC(C)=O)O3)[C@H]2O)[C@H]1CO | null | 862.31 | null | Fuc(a1-3);Neu5Ac9Ac(a2-3) | {'Neu5Ac9Ac': 1, 'Gal': 1, 'Fuc': 1, 'GlcNAc': 1} | {'Hex': 1, 'HexNAc': 1, 'Neu5Ac': 1, 'dHex': 1, 'Ac': 1} | 1 | 5 | 6 | 11.174771 | {'Cluster 0': 32.53, 'Cluster 1': 24.51, 'Cluster 2': 21.35, 'Cluster 3': 14.14, 'Cluster 4': 7.47} | {'Cluster 0': 28.3872, 'Cluster 1': 18.1307, 'Cluster 2': 15.8284, 'Cluster 3': 12.1638, 'Cluster 4': 8.6316, 'Cluster 5': 7.4043, 'Cluster 6': 2.2948, 'Cluster 7': 1.7473, 'Cluster 8': 1.4524, 'Cluster 9': 0.8549, 'Cluster 10': 0.6999, 'Cluster 11': 0.5724, 'Cluster 12': 0.4925, 'Cluster 13': 0.43, 'Cluster 14': 0.43,... | {'2': 0.3393658704538494, '3': 0.2654699961285546, '4': 0.35280116364421704, '5': 0.3774665070140752, '6': 0.3395331268382911, '7': 0.328799535902792, '8': 0.3295274008398676} | {'0': [6], '1': [3, 11, 16], '2': [0, 7, 8, 15], '3': [2, 5, 10], '4': [1, 4, 9, 12, 13, 14]} | {'explained_variance_ratio': [0.13617909008358706, 0.11841091506796865, 0.07790273805093931, 0.06883839806416005, 0.03881323582058494, 0.03578280680625945, 0.029586214585527442, 0.027006865695685126, 0.021971973313738177, 0.019458937028754945], 'cumulative_variance': [0.13617909008358706, 0.2545900051515557, 0.33249274... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DNeup5Ac[9A]a2-3DGalpb1-4[LFucpa1-3]DGlcpNAca1-OH | Neu5Ac9Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(a1- | α-D-Neup5Ac9Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-α-D-GlcpNAc-(1→ | G88894DG | WURCS=2.0/4,4,3/[a2122h-1a_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O_9*OCC/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2 | DNeup5Ac[9A]a2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-OH | Neu5Ac9Ac(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1- | α-D-Neup5Ac9Ac-(2→3)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→ | G83904OG | WURCS=2.0/4,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O_9*OCC/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2 | null | null | null | {'NDG2-FUC6': {'2': {'phi': -66.44, 'psi': -102.14, 'strain': 0.087, 'linkage': '1-3'}, '3': {'phi': -60.06, 'psi': -95.54, 'strain': 0.094, 'linkage': '1-3'}, '4': {'phi': -75.66, 'psi': -107.96, 'strain': 0.136, 'linkage': '1-3'}, '5': {'phi': -74.98, 'psi': -97.36, 'strain': -0.0, 'linkage': '1-3'}, '6': {'phi': -61... | {'NDG2-FUC6': {'2': {'phi': -66.44, 'psi': -102.14, 'strain': 0.087, 'linkage': '1-3'}, '3': {'phi': -60.05, 'psi': -95.53, 'strain': 0.094, 'linkage': '1-3'}, '4': {'phi': -75.64, 'psi': -107.96, 'strain': 0.136, 'linkage': '1-3'}, '5': {'phi': -74.97, 'psi': -97.36, 'strain': -0.0, 'linkage': '1-3'}, '6': {'phi': -61... | {'NDG2-FUC6': {'2': {'phi': -66.44, 'psi': -102.14, 'strain': 0.087, 'linkage': '1-3'}, '3': {'phi': -60.06, 'psi': -95.54, 'strain': 0.094, 'linkage': '1-3'}, '4': {'phi': -75.66, 'psi': -107.96, 'strain': 0.136, 'linkage': '1-3'}, '5': {'phi': -74.98, 'psi': -97.36, 'strain': -0.0, 'linkage': '1-3'}, '6': {'phi': -61... | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
./raw_dataGS00315/snfg.svg | ./torsion_data/GS00315_torsion_data.txt | {'Cluster 0': {'count': 16530, '3_2_phi_mean': -80.4, '3_2_psi_mean': -0.67, '5_2_phi_mean': -80.54, '5_2_psi_mean': -75.26, '4_3_phi_mean': -75.3, '4_3_psi_mean': -114.14, '6_5_phi_mean': -73.79, '6_5_psi_mean': -115.22, '3_2_phi_std': 24.69, '3_2_psi_std': 161.24, '5_2_phi_std': 14.12, '5_2_psi_std': 11.48, '4_3_phi_... | G06171MB | GS00315 | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-OH | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManp | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-D-Man | WURCS=2.0/3,5,4/[u1122h][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3-2-3/a2-b1_a6-d1_b4-c1_d4-e1 | RES,1b:b-dman-HEX-1:5,2b:b-dglc-HEX-1:5,3s:n-acetyl,4b:b-dgal-HEX-1:5,5b:b-dglc-HEX-1:5,6s:n-acetyl,7b:b-dgal-HEX-1:5,LIN,1:1o(2+1)2d,2:2d(2+1)3n,3:2o(4+1)4d,4:1o(6+1)5d,5:5d(2+1)6n,6:5o(4+1)7d, | O1C(O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H](O)[C@H]1CO[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O | null | 910.33 | {'motif': 'G00055MO', 'motif_label': 'Type 2 LN'};{'motif': 'G00055MO', 'motif_label': 'N-acetyllactosamine'} | Gal(b1-4) | {'Gal': 2, 'GlcNAc': 2, 'Man': 1} | {'Hex': 3, 'HexNAc': 2} | 15 | 17 | 26 | 10.760648 | {'Cluster 0': 41.32, 'Cluster 1': 19.3, 'Cluster 2': 18.21, 'Cluster 3': 10.88, 'Cluster 4': 10.29} | {'Cluster 0': 27.9172, 'Cluster 1': 16.8483, 'Cluster 2': 10.6989, 'Cluster 3': 9.0216, 'Cluster 4': 7.2993, 'Cluster 5': 6.0619, 'Cluster 6': 5.7369, 'Cluster 7': 4.1646, 'Cluster 8': 3.9896, 'Cluster 9': 2.7897, 'Cluster 10': 2.5447, 'Cluster 11': 1.1874, 'Cluster 12': 0.9824, 'Cluster 13': 0.355, 'Cluster 14': 0.332... | {'2': 0.5190944955125054, '3': 0.3687585497834145, '4': 0.26672296241992466, '5': 0.32991232802263537, '6': 0.3037672158579787, '7': 0.3640833786668191, '8': 0.32857741197079876} | {'0': [1, 2, 7, 10, 14], '1': [5, 13], '2': [0, 6], '3': [11, 15], '4': [3, 4, 8, 9, 12]} | {'explained_variance_ratio': [0.28807832120406407, 0.07375328527932733, 0.0695518656179752, 0.04439579233826803, 0.040797698743425426, 0.028711513261579173, 0.02655448695513494, 0.023849466082162603, 0.021860181511872273, 0.018907597633496656], 'cumulative_variance': [0.28807832120406407, 0.3618316064833914, 0.43138347... | 2 | GROMACS | GLYCAM_06j | 300 | 1 | 150 | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-OH | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(a1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→ | G16404NW | WURCS=2.0/3,5,4/[a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3-2-3/a2-b1_a6-d1_b4-c1_d4-e1 | DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpb1-OH | Gal(b1-4)GlcNAc(b1-2)[Gal(b1-4)GlcNAc(b1-6)]Man(b1- | β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-β-D-Manp-(1→ | G40067QO | WURCS=2.0/3,5,4/[a1122h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3-2-3/a2-b1_a6-d1_b4-c1_d4-e1 | null | null | null | {'MAN2-NAG5': {'2': {'phi': -64.37, 'psi': -74.58, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -92.86, 'psi': -161.93, 'strain': 3.196, 'linkage': '1-2'}, '4': {'phi': -81.81, 'psi': -133.12, 'strain': 2.08, 'linkage': '1-2'}, '5': {'phi': -106.26, 'psi': -112.41, 'strain': 2.783, 'linkage': '1-2'}, '6': {'phi': -... | {'MAN2-NAG5': {'2': {'phi': -64.37, 'psi': -74.58, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -92.83, 'psi': -161.97, 'strain': 3.196, 'linkage': '1-2'}, '4': {'phi': -81.84, 'psi': -133.13, 'strain': 2.08, 'linkage': '1-2'}, '5': {'phi': -106.23, 'psi': -112.4, 'strain': 2.783, 'linkage': '1-2'}, '6': {'phi': -9... | {'MAN2-NAG5': {'2': {'phi': -64.37, 'psi': -74.58, 'strain': 0.558, 'linkage': '1-2'}, '3': {'phi': -92.86, 'psi': -161.93, 'strain': 3.196, 'linkage': '1-2'}, '4': {'phi': -81.81, 'psi': -133.12, 'strain': 2.08, 'linkage': '1-2'}, '5': {'phi': -106.26, 'psi': -112.41, 'strain': 2.783, 'linkage': '1-2'}, '6': {'phi': -... | {'taxon_id': '9913', 'taxon_label': 'Bos taurus (domestic cattle)', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G06171MB'}]};{'taxon_id': '562', 'taxon_label': 'Escherichia coli', 'evidence': [{'label': 'GlyTouCan(glycome-db)', 'id': 'glytoucan.org/Structures/Glycans/G06171MB... | 5 | {'taxid': 9913, 'name': 'Bos taurus', 'annotation_category': 'direct', 'evidence': [{'database': 'GlyCosmos', 'id': 'G06171MB', 'url': 'https://glycosmos.org/glycans/show/G06171MB'}], 'common_name': 'Bovine', 'glygen_name': 'Bovine', 'reference_species': 'Bos taurus [9913]'};{'taxid': 9606, 'name': 'Homo sapiens', 'ann... | {'type': {'name': 'O-linked'}, 'subtype': {'name': 'O-mannose core'}} | {'uniprot_canonical_ac': 'Q8BGQ4-1', 'xref_key': 'glycan_xref_sandbox', 'xref_id': 'G06171MB', 'protein_name': 'Protein O-mannosyl-transferase 2', 'gene': 'Pomt2', 'gene_link': 'https://www.uniprot.org/uniprot/Q8BGQ4', 'tax_id': 10090, 'tax_name': 'Mus musculus', 'tax_common_name': 'Mouse', 'evidence': [{'id': 'G06171M... | {'id': '491840168', 'url': 'https://pubchem.ncbi.nlm.nih.gov/substance/491840168', 'database': 'PubChem Substance', 'categories': ['Chemical']};{'id': '1496', 'database': 'Glycosciences.de', 'categories': ['Discontinued']};{'id': '11729', 'url': 'https://www.genome.jp/dbget-bin/www_bget?carbbank+11729', 'database': 'Ca... | 1,148.59 | {'gnome_glygen_oglycans': 'yes', 'sandbox': 'yes', 'gnome_glygen': 'yes', 'gnome': 'yes', 'gnome_glycotree_oglycans': 'yes', 'pdb': 'no', 'gnome_glygen_nglycans': 'no', 'gnome_glycotree_nglycans': 'no'} | 393 | Saccharide | HexNAc(2)Hex(3) % 910.32778041 | freeEnd--?D-Man(--2b1D-GlcNAc,p--4b1D-Gal,p)--6b1D-GlcNAc,p--4b1D-Gal,p$MONO,Und,0,0,freeEnd | {'id': 'GGM.000001', 'name': 'Type 2 LN', 'synonym': 'N-acetyllactosamine', 'keywords': 'LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2'} | {'related_accession': 'G28681TP', 'relationship': 'ancestor'};{'related_accession': 'G51823YA', 'relationship': 'ancestor'};{'related_accession': 'G62968UK', 'relationship': 'ancestor'};{'related_accession': 'G28681TP', 'relationship': 'basecomposition'};{'related_accession': 'G51823YA', 'relationship': 'composition'};... | {'table_id': 'glycoprotein', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression', 'table_stats': [{'field': 'total', 'count': 0}, {'field': 'total_sites', 'count': 0}]};{'table_id': 'expression_tissue', 'table_stats': [{'field': 'total', 'count': 0}, {'field'... | {'type': 'added', 'description': 'introduced in data release 1.5.36'} |
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