JoaoJunior/formatted-java-preprocessed-code-APR

public static void deleteEvent(BwActionFormBase form, BwEvent event) throws Throwable { CalSvcI svci = form.fetchSvci(); svci.deleteEvent(event, false); /* If we auto delete and if sponsor id no longer exists in events table then delete this sponsor. */ if (form.getAutoDeleteSponsors() && svci.getSponsorRefs(event.getSponsor()).size() == 0) { svci.deleteSponsor(event.getSponsor()); } /* If we auto delete and if location id no longer exists in events table then delete this location. */ if (form.getAutoDeleteLocations() && svci.getLocationRefs(event.getLocation()).size() == 0) { svci.deleteLocation(event.getLocation()); } }

public static void deleteEvent(BwActionFormBase form, BwEvent event) throws Throwable { CalSvcI svci = form.fetchSvci(); svci.deleteEvent(event, false); /* If we auto delete and if sponsor id no longer exists in events table then delete this sponsor. */ if (form.getAutoDeleteSponsors() && svci.getSponsorRefs(event.getSponsor()).size() == 0) { svci.deleteSponsor(event.getSponsor()); } /* If we auto delete and if location id no longer exists in events table then delete this location. */ if (form.retrieveConfig().getAutoDeleteLocations() && svci.getLocationRefs(event.getLocation()).size() == 0) { svci.deleteLocation(event.getLocation()); } }

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public void update(MicroSecondTimeRange time, UnitRangeImpl amp, Dimension size){ SeismogramShapeIterator newIterator = new SeismogramShapeIterator(time, amp, size); if(newIterator.isDraggedFrom(currentIterator) && newIterator.hasSimilarAmp(currentIterator)){ dragPlot(newIterator); }else{ plot(newIterator); } }

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public SeismogramShapeIterator(MicroSecondTimeRange time, UnitRangeImpl amp, Dimension size){ this.time = time; this.amp = amp; this.size = size; }

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public void printStackTrace(PrintStream s) { Iterator i = invocationStack_.iterator(); while (i.hasNext()) { InvocationFrame frame = (InvocationFrame) i.next(); s.println(Evaluator.toString(frame.invocation)); } }

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public ComplexStubPersonAttributeDao() { this.setDefaultAttributeName("uid"); }

public ComplexStubPersonAttributeDao() { }

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public final void setDefaultAttributeName(final String name) { if (name == null) throw new IllegalArgumentException("The default attribute name must be null"); this.defaultAttribute = name; }

public final void setDefaultAttributeName(final String name) { if (name == null) throw new IllegalArgumentException("The default attribute name may not be null"); this.defaultAttribute = name; }

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public void set(Text other) { set(other.bytes, other.length); }

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public Interval(Object interval) { super(interval, null); }

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public static UnitRangeImpl getBestForDisplay(UnitRangeImpl inRange) { // just in case we don't have a case for this unit UnitRangeImpl outRange = inRange; if (inRange.getUnit().isConvertableTo(UnitImpl.METER_PER_SECOND)) { // velocity inRange = inRange.convertTo(UnitImpl.METER_PER_SECOND); if (Math.abs(inRange.getMinValue()) < .000001 && Math.abs(inRange.getMaxValue()) < .000001) { // use micron/sec outRange = inRange.convertTo(UnitImpl.NANOMETER_PER_SECOND); } else if (Math.abs(inRange.getMinValue()) < .001 && Math.abs(inRange.getMaxValue()) < .001) { // use micron/sec outRange = inRange.convertTo(UnitImpl.MICRON_PER_SECOND); } else if (Math.abs(inRange.getMinValue()) < 1 && Math.abs(inRange.getMaxValue()) < 1) { // use mm/sec outRange = inRange.convertTo(UnitImpl.MILLIMETER_PER_SECOND); } } else if (inRange.getUnit().isConvertableTo(UnitImpl.METER)) { // displacement inRange = inRange.convertTo(UnitImpl.METER); if (Math.abs(inRange.getMinValue()) < .000001 && Math.abs(inRange.getMaxValue()) < .000001) { // use nanometer outRange = inRange.convertTo(UnitImpl.NANOMETER); } else if (Math.abs(inRange.getMinValue()) < .001 && Math.abs(inRange.getMaxValue()) < .001) { // use micron outRange = inRange.convertTo(UnitImpl.MICRON); } else if (Math.abs(inRange.getMinValue()) < 1 && Math.abs(inRange.getMaxValue()) < 1) { // use mm outRange = inRange.convertTo(UnitImpl.MILLIMETER); } } else if (inRange.getUnit().isConvertableTo(UnitImpl.METER_PER_SECOND_PER_SECOND)) { //acceleration inRange = inRange.convertTo(UnitImpl.METER_PER_SECOND_PER_SECOND); if (Math.abs(inRange.getMinValue()) < .000001 && Math.abs(inRange.getMaxValue()) < .000001) { // use nanometer/sec/sec outRange = inRange.convertTo(UnitImpl.NANOMETER_PER_SECOND_PER_SECOND); } else if (Math.abs(inRange.getMinValue()) < .001 && Math.abs(inRange.getMaxValue()) < .001) { // use micron/sec/sec outRange = inRange.convertTo(UnitImpl.MICROMETER_PER_SECOND_PER_SECOND); } else if (Math.abs(inRange.getMinValue()) < 1 && Math.abs(inRange.getMaxValue()) < 1) { // use mm/sec/sec outRange = inRange.convertTo(UnitImpl.MILLIMETER_PER_SECOND_PER_SECOND); } } else if (inRange.getUnit().isConvertableTo(UnitImpl.COUNT)) { //acceleration inRange = inRange.convertTo(UnitImpl.COUNT); if (Math.abs(inRange.getMinValue()) < .001 && Math.abs(inRange.getMaxValue()) < .001) { outRange = inRange.convertTo(UnitImpl.MICROCOUNT); } else if (Math.abs(inRange.getMinValue()) < 1 && Math.abs(inRange.getMaxValue()) < 1) { outRange = inRange.convertTo(UnitImpl.MILLICOUNT); } else if (Math.abs(inRange.getMinValue()) < 1000 && Math.abs(inRange.getMaxValue()) < 1000) { outRange = inRange.convertTo(UnitImpl.COUNT); } else if (Math.abs(inRange.getMinValue()) < 1000000 && Math.abs(inRange.getMaxValue()) < 1000000) { outRange = inRange.convertTo(UnitImpl.KILOCOUNT); } else { outRange = inRange.convertTo(UnitImpl.MEGACOUNT); } } else { // logger.debug("No case, using amp range of "+outRange.getMinValue()+" to " // +outRange.getMaxValue()+" "+ // outRange.getUnit()); } return outRange; }

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public Component prepareRenderer(TableCellRenderer renderer, int row, int column) { MessageTableModel dm = (MessageTableModel)getModel(); int tagColumn = getTagColumn( row, dm ); String value = dm.getValueAt( row, tagColumn ).toString(); if( tagColumn < 0 ) return super.prepareRenderer(renderer, row, column); DefaultTableCellRenderer r = (DefaultTableCellRenderer)renderer; r.setForeground( Color.black ); int tag = Integer.parseInt(value); DataDictionary dataDictionary = dm.getDataDictionary(); if( dataDictionary.isHeaderField(tag) || dataDictionary.isTrailerField(tag) ) { if( column == tagColumn ) r.setForeground(new Color(192,192,255)); else if( column == tagColumn + 1 ) r.setForeground(new Color(128,128,255)); else if( column == tagColumn + 2 ) r.setForeground(Color.black); else if( column == tagColumn + 3 ) r.setForeground(new Color(255,128,255)); else if( column == tagColumn + 4 ) r.setForeground(new Color(255,128,255)); } else { if( column == tagColumn ) r.setForeground(new Color(64,64,255)); else if( column == tagColumn + 1 ) r.setForeground(new Color(0,0,255)); else if( column == tagColumn + 2 ) r.setForeground(Color.black); else if( column == tagColumn + 3 ) r.setForeground(new Color(255,0,255)); else if( column == tagColumn + 4 ) r.setForeground(new Color(255,0,255)); } return super.prepareRenderer(renderer, row, column); }

public Component prepareRenderer(TableCellRenderer renderer, int row, int column) { MessageTableModel dm = (MessageTableModel)getModel(); int tagColumn = getTagColumn( row, dm ); String value = dm.getValueAt( row, tagColumn ).toString(); if( tagColumn < 0 ) return super.prepareRenderer(renderer, row, column); DefaultTableCellRenderer r = (DefaultTableCellRenderer)renderer; r.setForeground( Color.black ); int tag = Integer.parseInt(value); DataDictionary dataDictionary = dm.getDataDictionary(); if( dataDictionary.isHeaderField(tag) || dataDictionary.isTrailerField(tag) ) { if( column == tagColumn ) r.setForeground(new Color(128,128,255)); else if( column == tagColumn + 1 ) r.setForeground(new Color(128,128,255)); else if( column == tagColumn + 2 ) r.setForeground(Color.black); else if( column == tagColumn + 3 ) r.setForeground(new Color(255,128,255)); else if( column == tagColumn + 4 ) r.setForeground(new Color(255,128,255)); } else { if( column == tagColumn ) r.setForeground(new Color(64,64,255)); else if( column == tagColumn + 1 ) r.setForeground(new Color(0,0,255)); else if( column == tagColumn + 2 ) r.setForeground(Color.black); else if( column == tagColumn + 3 ) r.setForeground(new Color(255,0,255)); else if( column == tagColumn + 4 ) r.setForeground(new Color(255,0,255)); } return super.prepareRenderer(renderer, row, column); }

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public Component prepareRenderer(TableCellRenderer renderer, int row, int column) { MessageTableModel dm = (MessageTableModel)getModel(); int tagColumn = getTagColumn( row, dm ); String value = dm.getValueAt( row, tagColumn ).toString(); if( tagColumn < 0 ) return super.prepareRenderer(renderer, row, column); DefaultTableCellRenderer r = (DefaultTableCellRenderer)renderer; r.setForeground( Color.black ); int tag = Integer.parseInt(value); DataDictionary dataDictionary = dm.getDataDictionary(); if( dataDictionary.isHeaderField(tag) || dataDictionary.isTrailerField(tag) ) { if( column == tagColumn ) r.setForeground(new Color(192,192,255)); else if( column == tagColumn + 1 ) r.setForeground(new Color(128,128,255)); else if( column == tagColumn + 2 ) r.setForeground(Color.black); else if( column == tagColumn + 3 ) r.setForeground(new Color(255,128,255)); else if( column == tagColumn + 4 ) r.setForeground(new Color(255,128,255)); } else { if( column == tagColumn ) r.setForeground(new Color(64,64,255)); else if( column == tagColumn + 1 ) r.setForeground(new Color(0,0,255)); else if( column == tagColumn + 2 ) r.setForeground(Color.black); else if( column == tagColumn + 3 ) r.setForeground(new Color(255,0,255)); else if( column == tagColumn + 4 ) r.setForeground(new Color(255,0,255)); } return super.prepareRenderer(renderer, row, column); }

public Component prepareRenderer(TableCellRenderer renderer, int row, int column) { MessageTableModel dm = (MessageTableModel)getModel(); int tagColumn = getTagColumn( row, dm ); String value = dm.getValueAt( row, tagColumn ).toString(); if( tagColumn < 0 ) return super.prepareRenderer(renderer, row, column); DefaultTableCellRenderer r = (DefaultTableCellRenderer)renderer; r.setForeground( Color.black ); int tag = Integer.parseInt(value); DataDictionary dataDictionary = dm.getDataDictionary(); if( dataDictionary.isHeaderField(tag) || dataDictionary.isTrailerField(tag) ) { if( column == tagColumn ) r.setForeground(new Color(192,192,255)); else if( column == tagColumn + 1 ) r.setForeground(new Color(128,128,255)); else if( column == tagColumn + 2 ) r.setForeground(Color.black); else if( column == tagColumn + 3 ) r.setForeground(new Color(255,128,255)); else if( column == tagColumn + 4 ) r.setForeground(new Color(255,128,255)); } else { if( column == tagColumn ) r.setForeground(new Color(0,0,255)); else if( column == tagColumn + 1 ) r.setForeground(new Color(0,0,255)); else if( column == tagColumn + 2 ) r.setForeground(Color.black); else if( column == tagColumn + 3 ) r.setForeground(new Color(255,0,255)); else if( column == tagColumn + 4 ) r.setForeground(new Color(255,0,255)); } return super.prepareRenderer(renderer, row, column); }

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public static String getEventInfo(EventAccessOperations event, String format) { return getEventInfo(event, format, new SimpleDateFormat( "MM/dd/yyyy HH:mm:sss z")); }

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public void addNamespace() throws WebdavIntfException { try { xml.addNs(CaldavUWDef.caldavNamespace); xml.addNs(CaldavUWDef.icalNamespace); } catch (Throwable t) { throw new WebdavIntfException(t); } }

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public void emitAcl(WebdavNsNode node) throws WebdavIntfException { CaldavBwNode uwnode = getBwnode(node); CaldavURI cdUri = uwnode.getCDURI(); Collection aces = null; try { if (cdUri.isCalendar()) { aces = getSvci().getAces(cdUri.getCal()); } else { aces = getSvci().getAces(((CaldavComponentNode)node).getEvent()); } xml.openTag(WebdavTags.acl); if (aces != null) { Iterator it = aces.iterator(); while (it.hasNext()) { Ace ace = (Ace)it.next(); emitAce(ace, true); emitAce(ace, false); } } xml.closeTag(WebdavTags.acl); } catch (WebdavIntfException wi) { throw wi; } catch (Throwable t) { throw new WebdavIntfException(t); } }

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public void parsePrivilege(AclInfo ainfo, Node nd, boolean grant) throws WebdavIntfException { CdAclInfo info = (CdAclInfo)ainfo; if (!grant) { // There's probably a way to block this throw WebdavIntfException.badRequest(); } Element el = getOnlyChild(nd); int priv; findPriv: { for (priv = 0; priv < privTags.length; priv++) { if (MethodBase.nodeMatches(el, privTags[priv])) { break findPriv; } } throw WebdavIntfException.badRequest(); } info.aces.add(new Ace(info.who, info.notWho, info.whoType, acl.makePriv(priv))); }

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public CalSvcIPars(String authUser, int rights, String user, String envPrefix, boolean publicAdmin, boolean caldav, String synchId, boolean debug) { this.authUser = authUser; this.rights = rights; this.user = user; this.envPrefix = envPrefix; this.publicAdmin = publicAdmin; this.caldav = caldav; this.synchId = synchId; this.debug = debug; }

public CalSvcIPars(String authUser, String user, String envPrefix, boolean publicAdmin, boolean caldav, String synchId, boolean debug) { this.authUser = authUser; this.rights = rights; this.user = user; this.envPrefix = envPrefix; this.publicAdmin = publicAdmin; this.caldav = caldav; this.synchId = synchId; this.debug = debug; }

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public CalSvcIPars(String authUser, int rights, String user, String envPrefix, boolean publicAdmin, boolean caldav, String synchId, boolean debug) { this.authUser = authUser; this.rights = rights; this.user = user; this.envPrefix = envPrefix; this.publicAdmin = publicAdmin; this.caldav = caldav; this.synchId = synchId; this.debug = debug; }

public CalSvcIPars(String authUser, int rights, String user, String envPrefix, boolean publicAdmin, boolean caldav, String synchId, boolean debug) { this.authUser = authUser; this.user = user; this.envPrefix = envPrefix; this.publicAdmin = publicAdmin; this.caldav = caldav; this.synchId = synchId; this.debug = debug; }

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public IcalTranslator(IcalCallback cb, boolean debug) { this.cb = cb; this.debug = debug; }

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public void decode(EncodedAcl acl, boolean getPrivileges) throws AccessException { decodeWhoType(acl); decodeHow(acl, getPrivileges); }

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public static Privilege makePriv(int privType) { return (Privilege)privs[privType].clone(); }

public static Privilege makePriv(int privType) { return privs[privType]; }

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public String toString() { StringBuffer sb = new StringBuffer(); sb.append("AclVO{");// sb.append(entityId); sb.append("}"); return sb.toString(); }

public String toString() { StringBuffer sb = new StringBuffer(); sb.append("EncodedAcl{pos="); sb.append(pos);// sb.append(entityId); sb.append("}"); return sb.toString(); }

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public String toString() { StringBuffer sb = new StringBuffer(); sb.append("AceVO{who="); sb.append(who); sb.append(", notWho="); sb.append(notWho); sb.append(", whoType="); sb.append(whoTypeNames[whoType]); sb.append("("); sb.append(whoType); sb.append(")"); if (how != null) { sb.append(", how="); sb.append(how); } sb.append(", \nprivs=["); Iterator it = getPrivs().iterator(); while (it.hasNext()) { Privilege p = (Privilege)it.next(); sb.append(p.toString()); sb.append("\n"); } sb.append("]"); sb.append("}"); return sb.toString(); }

public String toString() { StringBuffer sb = new StringBuffer(); sb.append("Ace{who="); sb.append(who); sb.append(", notWho="); sb.append(notWho); sb.append(", whoType="); sb.append(whoTypeNames[whoType]); sb.append("("); sb.append(whoType); sb.append(")"); if (how != null) { sb.append(", how="); sb.append(how); } sb.append(", \nprivs=["); Iterator it = getPrivs().iterator(); while (it.hasNext()) { Privilege p = (Privilege)it.next(); sb.append(p.toString()); sb.append("\n"); } sb.append("]"); sb.append("}"); return sb.toString(); }

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void setEntity(Object o) throws CalFacadeException { entity = o; if (o instanceof EventInfo) { EventInfo ei = (EventInfo)o; BwEvent ev = ei.getEvent(); start = ev.getDtstart().getDate(); start = ev.getDtend().getDate(); return; } if (o instanceof EventPeriod) { EventPeriod ep = (EventPeriod)o; start = String.valueOf(ep.getStart()); start = String.valueOf(ep.getEnd()); return; } if (o instanceof Period) { Period p = (Period)o; start = String.valueOf(p.getStart()); start = String.valueOf(p.getEnd()); return; } start = null; end = null; }

void setEntity(Object o) throws CalFacadeException { entity = o; if (o instanceof EventInfo) { EventInfo ei = (EventInfo)o; BwEvent ev = ei.getEvent(); start = ev.getDtstart().getDate(); end = ev.getDtend().getDate(); return; } if (o instanceof EventPeriod) { EventPeriod ep = (EventPeriod)o; start = String.valueOf(ep.getStart()); start = String.valueOf(ep.getEnd()); return; } if (o instanceof Period) { Period p = (Period)o; start = String.valueOf(p.getStart()); start = String.valueOf(p.getEnd()); return; } start = null; end = null; }

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void setEntity(Object o) throws CalFacadeException { entity = o; if (o instanceof EventInfo) { EventInfo ei = (EventInfo)o; BwEvent ev = ei.getEvent(); start = ev.getDtstart().getDate(); start = ev.getDtend().getDate(); return; } if (o instanceof EventPeriod) { EventPeriod ep = (EventPeriod)o; start = String.valueOf(ep.getStart()); start = String.valueOf(ep.getEnd()); return; } if (o instanceof Period) { Period p = (Period)o; start = String.valueOf(p.getStart()); start = String.valueOf(p.getEnd()); return; } start = null; end = null; }

void setEntity(Object o) throws CalFacadeException { entity = o; if (o instanceof EventInfo) { EventInfo ei = (EventInfo)o; BwEvent ev = ei.getEvent(); start = ev.getDtstart().getDate(); start = ev.getDtend().getDate(); return; } if (o instanceof EventPeriod) { EventPeriod ep = (EventPeriod)o; start = String.valueOf(ep.getStart()); end = String.valueOf(ep.getEnd()); return; } if (o instanceof Period) { Period p = (Period)o; start = String.valueOf(p.getStart()); start = String.valueOf(p.getEnd()); return; } start = null; end = null; }

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void setEntity(Object o) throws CalFacadeException { entity = o; if (o instanceof EventInfo) { EventInfo ei = (EventInfo)o; BwEvent ev = ei.getEvent(); start = ev.getDtstart().getDate(); start = ev.getDtend().getDate(); return; } if (o instanceof EventPeriod) { EventPeriod ep = (EventPeriod)o; start = String.valueOf(ep.getStart()); start = String.valueOf(ep.getEnd()); return; } if (o instanceof Period) { Period p = (Period)o; start = String.valueOf(p.getStart()); start = String.valueOf(p.getEnd()); return; } start = null; end = null; }

void setEntity(Object o) throws CalFacadeException { entity = o; if (o instanceof EventInfo) { EventInfo ei = (EventInfo)o; BwEvent ev = ei.getEvent(); start = ev.getDtstart().getDate(); start = ev.getDtend().getDate(); return; } if (o instanceof EventPeriod) { EventPeriod ep = (EventPeriod)o; start = String.valueOf(ep.getStart()); start = String.valueOf(ep.getEnd()); return; } if (o instanceof Period) { Period p = (Period)o; start = String.valueOf(p.getStart()); end = String.valueOf(p.getEnd()); return; } start = null; end = null; }

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public String getDefaultTimeZoneId() throws CalFacadeException;

public String getDefaultTimeZoneId() throws CalFacadeException { return defaultTimeZoneId; }

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public void addSeismogram(LocalSeismogramImpl seis, AuditInfo[] audit) { // Note this does not set the xlink, as the seis has not been saved anywhere yet. Document doc = config.getOwnerDocument(); Element sac = doc.createElement("SacSeismogram"); String name =seis.getProperty("name"); if (name == null || name.length() == 0) { name = edu.iris.Fissures.network.ChannelIdUtil.toStringNoDates(seis.channel_id); } Element nameE = doc.createElement("name"); nameE.setNodeValue(name); sac.appendChild(nameE); Property[] props = seis.getProperties(); Element propE, propNameE, propValueE; for (int i=0; i<props.length; i++) { if (props[i].name != "name") { propE = doc.createElement("property"); propNameE = doc.createElement("name"); propNameE.setNodeValue(props[i].name); propValueE = doc.createElement("value"); propValueE.setNodeValue(props[i].value); propE.appendChild(propNameE); propE.appendChild(propValueE); sac.appendChild(propE); } } config.appendChild(sac); seismogramCache.put(name, seis); logger.debug("added seis now "+getSeismogramNames().length+" seisnogram names.");xpath = new CachedXPathAPI(); logger.debug("2 added seis now "+getSeismogramNames().length+" seisnogram names."); }

public void addSeismogram(LocalSeismogramImpl seis, AuditInfo[] audit) { // Note this does not set the xlink, as the seis has not been saved anywhere yet. Document doc = config.getOwnerDocument(); Element sac = doc.createElement("SacSeismogram"); String name =seis.getProperty(seisNameKey); if (name == null || name.length() == 0) { name = edu.iris.Fissures.network.ChannelIdUtil.toStringNoDates(seis.channel_id); } Element nameE = doc.createElement("name"); nameE.setNodeValue(name); sac.appendChild(nameE); Property[] props = seis.getProperties(); Element propE, propNameE, propValueE; for (int i=0; i<props.length; i++) { if (props[i].name != "name") { propE = doc.createElement("property"); propNameE = doc.createElement("name"); propNameE.setNodeValue(props[i].name); propValueE = doc.createElement("value"); propValueE.setNodeValue(props[i].value); propE.appendChild(propNameE); propE.appendChild(propValueE); sac.appendChild(propE); } } config.appendChild(sac); seismogramCache.put(name, seis); logger.debug("added seis now "+getSeismogramNames().length+" seisnogram names.");xpath = new CachedXPathAPI(); logger.debug("2 added seis now "+getSeismogramNames().length+" seisnogram names."); }

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public void addSeismogram(LocalSeismogramImpl seis, AuditInfo[] audit) { // Note this does not set the xlink, as the seis has not been saved anywhere yet. Document doc = config.getOwnerDocument(); Element sac = doc.createElement("SacSeismogram"); String name =seis.getProperty("name"); if (name == null || name.length() == 0) { name = edu.iris.Fissures.network.ChannelIdUtil.toStringNoDates(seis.channel_id); } Element nameE = doc.createElement("name"); nameE.setNodeValue(name); sac.appendChild(nameE); Property[] props = seis.getProperties(); Element propE, propNameE, propValueE; for (int i=0; i<props.length; i++) { if (props[i].name != "name") { propE = doc.createElement("property"); propNameE = doc.createElement("name"); propNameE.setNodeValue(props[i].name); propValueE = doc.createElement("value"); propValueE.setNodeValue(props[i].value); propE.appendChild(propNameE); propE.appendChild(propValueE); sac.appendChild(propE); } } config.appendChild(sac); seismogramCache.put(name, seis); logger.debug("added seis now "+getSeismogramNames().length+" seisnogram names.");xpath = new CachedXPathAPI(); logger.debug("2 added seis now "+getSeismogramNames().length+" seisnogram names."); }

public void addSeismogram(LocalSeismogramImpl seis, AuditInfo[] audit) { // Note this does not set the xlink, as the seis has not been saved anywhere yet. Document doc = config.getOwnerDocument(); Element sac = doc.createElement("SacSeismogram"); String name =seis.getProperty("name"); if (name == null || name.length() == 0) { name = edu.iris.Fissures.network.ChannelIdUtil.toStringNoDates(seis.channel_id); } Element nameE = doc.createElement("name"); nameE.setNodeValue(name); sac.appendChild(nameE); Property[] props = seis.getProperties(); Element propE, propNameE, propValueE; for (int i=0; i<props.length; i++) { if (props[i].name != seisNameKey) { propE = doc.createElement("property"); propNameE = doc.createElement("name"); propNameE.setNodeValue(props[i].name); propValueE = doc.createElement("value"); propValueE.setNodeValue(props[i].value); propE.appendChild(propNameE); propE.appendChild(propValueE); sac.appendChild(propE); } } config.appendChild(sac); seismogramCache.put(name, seis); logger.debug("added seis now "+getSeismogramNames().length+" seisnogram names.");xpath = new CachedXPathAPI(); logger.debug("2 added seis now "+getSeismogramNames().length+" seisnogram names."); }

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public void addSeismogramRef(URL seisURL, String name, Property[] props, ParameterRef[] parm_ids, AuditInfo[] audit) { String baseStr = base.toString(); String seisStr = seisURL.toString(); if (seisStr.startsWith(baseStr)) { // use relative URL seisStr = seisStr.substring(baseStr.length()); } // end of if (seisStr.startsWith(baseStr)) Document doc = config.getOwnerDocument(); Element sac = doc.createElement("SacSeismogram"); sac.setAttributeNS(xlinkNS, "xlink:type", "simple"); sac.setAttributeNS(xlinkNS, "xlink:href", seisStr); Element nameE = doc.createElement("name"); Text text = doc.createTextNode(name); nameE.appendChild(text); sac.appendChild(nameE); Element propE, propNameE, propValueE; for (int i=0; i<props.length; i++) { if (props[i].name != "name") { propE = doc.createElement("property"); propNameE = doc.createElement("name"); text = doc.createTextNode(props[i].name); propNameE.appendChild(text); propValueE = doc.createElement("value"); text = doc.createTextNode(props[i].value); propValueE.appendChild(text); propE.appendChild(propNameE); propE.appendChild(propValueE); sac.appendChild(propE); } } config.appendChild(sac); }

public void addSeismogramRef(URL seisURL, String name, Property[] props, ParameterRef[] parm_ids, AuditInfo[] audit) { String baseStr = base.toString(); String seisStr = seisURL.toString(); if (seisStr.startsWith(baseStr)) { // use relative URL seisStr = seisStr.substring(baseStr.length()); } // end of if (seisStr.startsWith(baseStr)) Document doc = config.getOwnerDocument(); Element sac = doc.createElement("SacSeismogram"); sac.setAttributeNS(xlinkNS, "xlink:type", "simple"); sac.setAttributeNS(xlinkNS, "xlink:href", seisStr); Element nameE = doc.createElement("name"); Text text = doc.createTextNode(name); nameE.appendChild(text); sac.appendChild(nameE); Element propE, propNameE, propValueE; for (int i=0; i<props.length; i++) { if (props[i].name != seisNameKey) { propE = doc.createElement("property"); propNameE = doc.createElement("name"); text = doc.createTextNode(props[i].name); propNameE.appendChild(text); propValueE = doc.createElement("value"); text = doc.createTextNode(props[i].value); propValueE.appendChild(text); propE.appendChild(propNameE); propE.appendChild(propValueE); sac.appendChild(propE); } } config.appendChild(sac); }

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public LocalSeismogramImpl getSeismogram(String name) { if (seismogramCache.containsKey(name)) { return (LocalSeismogramImpl)seismogramCache.get(name); } // end of if (seismogramCache.containsKey(name)) String urlString = "NONE"; NodeList nList = evalNodeList(config, "SacSeismogram[name="+dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { try { Node n = nList.item(0); if (n instanceof Element) { Element e = (Element)n; urlString = e.getAttribute("xlink:href"); if (urlString == null || urlString == "") { throw new MalformedURLException(name+" does not have an xlink:href attribute"); } // end of if (urlString == null || urlString == "") URL sacURL = new URL(base, urlString); DataInputStream dis = new DataInputStream(new BufferedInputStream(sacURL.openStream())); SacTimeSeries sac = new SacTimeSeries(); sac.read(dis); LocalSeismogramImpl seis = SacToFissures.getSeismogram(sac); NodeList propList = evalNodeList(e, "property"); if (propList != null && propList.getLength() != 0) { Property[] props = seis.getProperties(); Property[] newProps = new Property[1+props.length+nList.getLength()]; System.arraycopy(props, 0, newProps, 0, props.length); for (int i=0; i<propList.getLength(); i++) { Element propElement = (Element)propList.item(i); newProps[props.length+i] = new Property(xpath.eval(propElement, "name/text()").str(), xpath.eval(propElement, "value/text()").str()); } // end of for newProps[newProps.length-1] = new Property("name", name); seis.setProperties(newProps); } if (seis != null) { seismogramCache.put(name, seis); } // end of if (seis != null) return seis; } } catch (MalformedURLException e) { logger.error("Couldn't get seismogram "+name, e); logger.error(urlString); } catch (Exception e) { logger.error("Couldn't get seismogram "+name, e); logger.error(urlString); } // end of try-catch } return null; }

public LocalSeismogramImpl getSeismogram(String name) { if (seismogramCache.containsKey(name)) { return (LocalSeismogramImpl)seismogramCache.get(name); } // end of if (seismogramCache.containsKey(name)) String urlString = "NONE"; NodeList nList = evalNodeList(config, "SacSeismogram[name="+dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { try { Node n = nList.item(0); if (n instanceof Element) { Element e = (Element)n; urlString = e.getAttribute("xlink:href"); if (urlString == null || urlString == "") { throw new MalformedURLException(name+" does not have an xlink:href attribute"); } // end of if (urlString == null || urlString == "") URL sacURL = new URL(base, urlString); DataInputStream dis = new DataInputStream(new BufferedInputStream(sacURL.openStream())); SacTimeSeries sac = new SacTimeSeries(); sac.read(dis); LocalSeismogramImpl seis = SacToFissures.getSeismogram(sac); NodeList propList = evalNodeList(e, "property"); if (propList != null && propList.getLength() != 0) { Property[] props = seis.getProperties(); Property[] newProps = new Property[1+props.length+nList.getLength()]; System.arraycopy(props, 0, newProps, 0, props.length); for (int i=0; i<propList.getLength(); i++) { Element propElement = (Element)propList.item(i); newProps[props.length+i] = new Property(xpath.eval(propElement, "name/text()").str(), xpath.eval(propElement, "value/text()").str()); } // end of for newProps[newProps.length-1] = new Property(seisNameKey, name); seis.setProperties(newProps); } if (seis != null) { seismogramCache.put(name, seis); } // end of if (seis != null) return seis; } } catch (MalformedURLException e) { logger.error("Couldn't get seismogram "+name, e); logger.error(urlString); } catch (Exception e) { logger.error("Couldn't get seismogram "+name, e); logger.error(urlString); } // end of try-catch } return null; }

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private TimeInterval processAllChannels(File file, String unitIdNumber) throws IOException { String fileName = file.getName(); String yearAndDay = file.getParentFile() .getParentFile() .getParentFile() .getName(); MicroSecondDate beginTime = FileNameParser.getBeginTime(yearAndDay, fileName); beginTime = LeapSecondApplier.applyLeapSecondCorrection(unitIdNumber, beginTime); TimeInterval nominalLengthOfData = new TimeInterval(new QuantityImpl(Double.valueOf(pp.getString("nominalLengthOfData")) .doubleValue(), UnitImpl.MILLISECOND)); MicroSecondDate endTime = beginTime.add(nominalLengthOfData); TimeRange fileTimeWindow = new TimeRange(beginTime.getFissuresTime(), endTime.getFissuresTime()); TimeInterval seismogramTime = new TimeInterval(0, UnitImpl.MILLISECOND); PacketType[] seismogramDataPacketArray; try { seismogramDataPacketArray = rtFileReader.processRT130Data(file.getCanonicalPath(), true, fileTimeWindow); } catch(RT130FormatException e) { reportFormatException(file, e); return seismogramTime; } System.out.println(file.getCanonicalPath()); LocalSeismogramImpl[] seis = toSeismogram.convert(seismogramDataPacketArray); Channel[] chans = toSeismogram.getChannels(); for(int i = 0; i < seis.length; i++) { // Add one sample period to end time to pad to the start of the next // packet MicroSecondDate end = seis[i].getEndTime() .add(seis[i].getSampling().getPeriod()); for(int j = 0; j < chans.length; j++) { if(chans[j].get_id() == seis[i].channel_id) { addToReport(chans[j], seis[i].getBeginTime(), end); break; } } // Get the time from the first seismogram if(flags.contains(RT130FileHandlerFlag.FULL) && seismogramTime.value == 0) { seismogramTime = new TimeInterval(seis[i].getBeginTime(), end); } } return seismogramTime; }

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public boolean scan(File file) throws IOException { if(file.getName().endsWith("00000000")) { return read(file); } String unitIdNumber = getUnitId(file); MicroSecondDate beginTime = getBeginTime(file, unitIdNumber); TimeInterval lengthOfData; try { lengthOfData = FileNameParser.getLengthOfData(file.getName()); } catch(RT130FormatException e) { reportFormatException(file, e); return false; } if(lengthOfData.value > acceptableLengthOfData) { reportBadName(file, file.getName() + " indicates more data than in a regular rt130 file. The file will be read to determine its true length."); return read(file); } TimeInterval nominalLengthOfData = new TimeInterval(new QuantityImpl(Double.valueOf(pp.getString("nominalLengthOfData")) .doubleValue(), UnitImpl.MILLISECOND)); MicroSecondDate nominalEndTime = beginTime.add(nominalLengthOfData); TimeRange fileTimeWindow = new TimeRange(beginTime.getFissuresTime(), nominalEndTime.getFissuresTime()); Channel[] channel; try { channel = chanCreator.create(unitIdNumber, beginTime, file.getCanonicalPath(), fileTimeWindow); } catch(RT130FormatError err) { reportFormatException(file, err); return false; } MicroSecondDate endTime = beginTime.add(lengthOfData); for(int i = 0; i < channel.length; i++) { addToReport(channel[i], beginTime, endTime); } return true; }

public boolean scan(File file) throws IOException { if(file.getName().endsWith("00000000")) { return read(file); } String unitIdNumber = getUnitId(file); TimeInterval lengthOfData; try { lengthOfData = FileNameParser.getLengthOfData(file.getName()); } catch(RT130FormatException e) { reportFormatException(file, e); return false; } if(lengthOfData.value > acceptableLengthOfData) { reportBadName(file, file.getName() + " indicates more data than in a regular rt130 file. The file will be read to determine its true length."); return read(file); } TimeInterval nominalLengthOfData = new TimeInterval(new QuantityImpl(Double.valueOf(pp.getString("nominalLengthOfData")) .doubleValue(), UnitImpl.MILLISECOND)); MicroSecondDate nominalEndTime = beginTime.add(nominalLengthOfData); TimeRange fileTimeWindow = new TimeRange(beginTime.getFissuresTime(), nominalEndTime.getFissuresTime()); Channel[] channel; try { channel = chanCreator.create(unitIdNumber, beginTime, file.getCanonicalPath(), fileTimeWindow); } catch(RT130FormatError err) { reportFormatException(file, err); return false; } MicroSecondDate endTime = beginTime.add(lengthOfData); for(int i = 0; i < channel.length; i++) { addToReport(channel[i], beginTime, endTime); } return true; }

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public boolean scan(File file) throws IOException { if(file.getName().endsWith("00000000")) { return read(file); } String unitIdNumber = getUnitId(file); MicroSecondDate beginTime = getBeginTime(file, unitIdNumber); TimeInterval lengthOfData; try { lengthOfData = FileNameParser.getLengthOfData(file.getName()); } catch(RT130FormatException e) { reportFormatException(file, e); return false; } if(lengthOfData.value > acceptableLengthOfData) { reportBadName(file, file.getName() + " indicates more data than in a regular rt130 file. The file will be read to determine its true length."); return read(file); } TimeInterval nominalLengthOfData = new TimeInterval(new QuantityImpl(Double.valueOf(pp.getString("nominalLengthOfData")) .doubleValue(), UnitImpl.MILLISECOND)); MicroSecondDate nominalEndTime = beginTime.add(nominalLengthOfData); TimeRange fileTimeWindow = new TimeRange(beginTime.getFissuresTime(), nominalEndTime.getFissuresTime()); Channel[] channel; try { channel = chanCreator.create(unitIdNumber, beginTime, file.getCanonicalPath(), fileTimeWindow); } catch(RT130FormatError err) { reportFormatException(file, err); return false; } MicroSecondDate endTime = beginTime.add(lengthOfData); for(int i = 0; i < channel.length; i++) { addToReport(channel[i], beginTime, endTime); } return true; }

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public boolean scan(File file) throws IOException { if(file.getName().endsWith("00000000")) { return read(file); } String unitIdNumber = getUnitId(file); MicroSecondDate beginTime = getBeginTime(file, unitIdNumber); TimeInterval lengthOfData; try { lengthOfData = FileNameParser.getLengthOfData(file.getName()); } catch(RT130FormatException e) { reportFormatException(file, e); return false; } if(lengthOfData.value > acceptableLengthOfData) { reportBadName(file, file.getName() + " indicates more data than in a regular rt130 file. The file will be read to determine its true length."); return read(file); } TimeInterval nominalLengthOfData = new TimeInterval(new QuantityImpl(Double.valueOf(pp.getString("nominalLengthOfData")) .doubleValue(), UnitImpl.MILLISECOND)); MicroSecondDate nominalEndTime = beginTime.add(nominalLengthOfData); TimeRange fileTimeWindow = new TimeRange(beginTime.getFissuresTime(), nominalEndTime.getFissuresTime()); Channel[] channel; try { channel = chanCreator.create(unitIdNumber, beginTime, file.getCanonicalPath(), fileTimeWindow); } catch(RT130FormatError err) { reportFormatException(file, err); return false; } MicroSecondDate endTime = beginTime.add(lengthOfData); for(int i = 0; i < channel.length; i++) { addToReport(channel[i], beginTime, endTime); } return true; }

public boolean scan(File file) throws IOException { if(file.getName().endsWith("00000000")) { return read(file); } String unitIdNumber = getUnitId(file); MicroSecondDate beginTime = getBeginTime(file, unitIdNumber); TimeInterval lengthOfData; try { lengthOfData = FileNameParser.getLengthOfData(file.getName()); } catch(RT130FormatException e) { reportFormatException(file, e); return false; } if(lengthOfData.value > acceptableLengthOfData) { reportBadName(file, file.getName() + " indicates more data than in a regular rt130 file. The file will be read to determine its true length."); return read(file); } TimeInterval nominalLengthOfData = new TimeInterval(new QuantityImpl(Double.valueOf(pp.getString("nominalLengthOfData")) .doubleValue(), UnitImpl.MILLISECOND)); MicroSecondDate nominalEndTime = beginTime.add(nominalLengthOfData); TimeRange fileTimeWindow = new TimeRange(beginTime.getFissuresTime(), nominalEndTime.getFissuresTime()); Channel[] channel; try { channel = chanCreator.create(unitIdNumber, file.getCanonicalPath(), fileTimeWindow); } catch(RT130FormatError err) { reportFormatException(file, err); return false; } MicroSecondDate endTime = beginTime.add(lengthOfData); for(int i = 0; i < channel.length; i++) { addToReport(channel[i], endTime); } return true; }

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public static TimeInterval getLengthOfData(String fileName) throws RT130FormatException { if(fileName.length() != 18) { System.err.println("The file is not 18 characters in length."); throw new RT130FormatException(); } else { String stringLengthOfData = fileName.substring(10, 18); long longLengthOfData = Long.parseLong(stringLengthOfData, 16); TimeInterval lengthOfData = new TimeInterval(longLengthOfData, UnitImpl.MILLISECOND); return lengthOfData; } }

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protected UnitRangeImpl calcGenericAmp(UnitRangeImpl inAmp, DataSetSeismogram seis) { UnitRangeImpl basic = super.calcGenericAmp(inAmp, seis); double mean = (basic.getMaxValue() - basic.getMinValue())/2; double offset = basic.getMaxValue() - mean; UnitRangeImpl out = new UnitRangeImpl(-1 * offset, offset , basic.getUnit()); return UnitDisplayUtil.getBestForDisplay(out); }

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public ParticleMotion(DataSetSeismogram hSeis, DataSetSeismogram vSeis, TimeConfig tc, Color color, String key, boolean horizPlane) { horiz = new SeismogramContainer(this,hSeis); vert = new SeismogramContainer(this, vSeis); this.tc = tc; this.key = key; setUpConfigs(); this.horizPlane = horizPlane; if(horizPlane){ pmd.displayBackAzimuth(hSeis.getDataSet(), hSeis.getRequestFilter().channel_id, color); } this.color = color; tc.fireTimeEvent(); }

public ParticleMotion(DataSetSeismogram hSeis, DataSetSeismogram vSeis, TimeConfig tc, Color color, String key, boolean horizPlane) { horiz = new SeismogramContainer(this,hSeis); vert = new SeismogramContainer(this, vSeis); this.tc = tc; this.key = key; setUpConfigs(); this.horizPlane = horizPlane; if(horizPlane){ pmd.displayBackAzimuth(hSeis.getDataSet(), hSeis.getRequestFilter().channel_id, color); } tc.fireTimeEvent(); }

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public void add(NamedFilter filter){ if(!filterToParMo.containsKey(filter)) filterToParMo.put(filter, new ParticleMotion(FilteredDataSetSeismogram.getFiltered(horiz.getDataSetSeismogram(), filter), FilteredDataSetSeismogram.getFiltered(vert.getDataSetSeismogram(), filter), tc, SeismogramDisplay.COLORS[filterCount++ % SeismogramDisplay.COLORS.length], key, horizPlane)); }

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public void add(NamedFilter filter){ if(!filterToParMo.containsKey(filter)) filterToParMo.put(filter, new ParticleMotion(FilteredDataSetSeismogram.getFiltered(horiz.getDataSetSeismogram(), filter), FilteredDataSetSeismogram.getFiltered(vert.getDataSetSeismogram(), filter), tc, SeismogramDisplay.COLORS[filterCount++ % SeismogramDisplay.COLORS.length], key, horizPlane)); }

public void add(NamedFilter filter){ if(!filterToParMo.containsKey(filter)) filterToParMo.put(filter, new ParticleMotion(FilteredDataSetSeismogram.getFiltered(horiz.getDataSetSeismogram(), filter), FilteredDataSetSeismogram.getFiltered(vert.getDataSetSeismogram(), filter), tc, color, key, horizPlane)); }

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public void draw(Graphics g, Dimension size) { if(visible){ Graphics2D g2D = (Graphics2D) g; if(horiz.getIterator(tr).numPointsLeft() <= 0 || vert.getIterator(tr).numPointsLeft() <= 0){ return; } g2D.setColor(color); g2D.setStroke(DisplayUtils.TWO_PIXEL_STROKE); int[]hPixels = SimplePlotUtil.getPlottableSimple(horiz.getIterator(tr), ae.getAmp(horiz.getDataSetSeismogram()), size); int[] vPixels = SimplePlotUtil.getPlottableSimple(vert.getIterator(tr), ae.getAmp(vert.getDataSetSeismogram()), size); SimplePlotUtil.flipArray(hPixels, size.width); g2D.draw(getParticleMotionPath(hPixels, vPixels)); } Iterator it = filterToParMo.keySet().iterator(); while(it.hasNext()){ ((ParticleMotion)filterToParMo.get(it.next())).draw(g, size); } }

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public void add(NamedFilter filter){ Iterator it = parMos.iterator(); while(it.hasNext()){ ((ParticleMotion)it.next()).add(filter); } repaint(); }

public void add(NamedFilter filter){ Iterator it = parMos.iterator(); while(it.hasNext()){ ParticleMotion cur = (ParticleMotion)it.next(); cur.add(filter, getColor(cur.getTimeConfig(), filter)); } repaint(); }

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public synchronized void drawAzimuth(ParticleMotion particleMotion, Graphics2D graphics2D) { if(!particleMotion.isHorizontalPlane()) return; Shape sector = getSectorShape(); graphics2D.setPaint(Color.LIGHT_GRAY); graphics2D.fill(sector); graphics2D.draw(sector); drawAzimuths(graphics2D); graphics2D.setStroke(DisplayUtils.ONE_PIXEL_STROKE); }

public void drawAzimuth(ParticleMotion particleMotion, Graphics2D graphics2D) { if(!particleMotion.isHorizontalPlane()) return; Shape sector = getSectorShape(); graphics2D.setPaint(Color.LIGHT_GRAY); graphics2D.fill(sector); graphics2D.draw(sector); drawAzimuths(graphics2D); graphics2D.setStroke(DisplayUtils.ONE_PIXEL_STROKE); }

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public void drawAzimuths(Graphics2D g2D) { Insets insets = getInsets(); double fmin = super.getSize().getWidth() - insets.left - insets.right; double fmax = super.getSize().getHeight() - insets.top - insets.bottom; int originx = (int)(fmin/2); int originy = (int)(fmax/2); int newx = originx; int newy = originy; Iterator it = azimuths.keySet().iterator(); g2D.setStroke(DisplayUtils.TWO_PIXEL_STROKE); while(it.hasNext()){ Double key = (Double)it.next(); Color parMoCo =(Color)azimuths.get(key); g2D.setColor(new Color(parMoCo.getRed(), parMoCo.getGreen(), parMoCo.getBlue(), 96)); GeneralPath generalPath = new GeneralPath(); double degrees = key.doubleValue(); int x = (int)(fmin * Math.cos(Math.toRadians(degrees))); int y = (int)(fmax * Math.sin(Math.toRadians(degrees))); generalPath.moveTo(newx+x, newy-y); generalPath.lineTo(newx-x, newy+y); g2D.draw(generalPath); } }

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public SeismogramContainer(SeismogramContainerListener initialListener, DataSetSeismogram seismogram){ if(initialListener != null){ listeners.add(initialListener); } this.seismogram = seismogram; seismogram.addSeisDataChangeListener(this); seismogram.addRequestFilterChangeListener(this); }

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public SeismogramIterator getIterator(MicroSecondTimeRange timeRange){ SoftReference iteratorReference = null; synchronized(threadToIterator){ iteratorReference = (SoftReference)threadToIterator.get(Thread.currentThread()); } if(iteratorReference != null){ SeismogramIterator it = (SeismogramIterator)iteratorReference.get(); if(it != null && it.hasNext()){ if(it.getTimeRange().equals(timeRange)){ return it; }else if(timeRange != null){ it.setTimeRange(timeRange); return it; } } } SeismogramIterator it = new SeismogramIterator(seismogram.getName(), getSeismograms(), timeRange); synchronized(threadToIterator){ threadToIterator.put(Thread.currentThread(),new SoftReference(it)); } return it; }

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public SeismogramIterator getIterator(MicroSecondTimeRange timeRange){ SoftReference iteratorReference = null; synchronized(threadToIterator){ iteratorReference = (SoftReference)threadToIterator.get(Thread.currentThread()); } if(iteratorReference != null){ SeismogramIterator it = (SeismogramIterator)iteratorReference.get(); if(it != null && it.hasNext()){ if(it.getTimeRange().equals(timeRange)){ return it; }else if(timeRange != null){ it.setTimeRange(timeRange); return it; } } } SeismogramIterator it = new SeismogramIterator(seismogram.getName(), getSeismograms(), timeRange); synchronized(threadToIterator){ threadToIterator.put(Thread.currentThread(),new SoftReference(it)); } return it; }

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public abstract int getMaximumValue(long instant);

public abstract int getMaximumValue();

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public static Element createElement(String loc) throws Exception { ClassLoader cl = SeismogramDisplayConfigurationTest.class.getClassLoader(); InputStream source = cl.getResourceAsStream(loc); DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); factory.setNamespaceAware(true); DocumentBuilder builder = factory.newDocumentBuilder(); Document doc = builder.parse(source); return doc.getDocumentElement(); }

public static Element createElement(String loc) throws Exception { ClassLoader cl = DOMHelper.class.getClassLoader(); InputStream source = cl.getResourceAsStream(loc); DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); factory.setNamespaceAware(true); DocumentBuilder builder = factory.newDocumentBuilder(); Document doc = builder.parse(source); return doc.getDocumentElement(); }

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public ATObject meta_eval(ATContext ctx) throws NATException { return new NATAsyncMessage(ctx.base_getSelf(), this.getSelector(), Evaluator.evaluateArguments(this.base_getArguments().asNativeTable(), ctx)); }

public ATObject meta_eval(ATContext ctx) throws NATException { return new NATAsyncMessage(ctx.base_getSelf(), this.base_getSelector(), Evaluator.evaluateArguments(this.base_getArguments().asNativeTable(), ctx)); }

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public String getAsShortText(int fieldValue, Locale locale) { return getAsText(fieldValue, locale); }

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public String getAsText(int fieldValue, Locale locale) { return Integer.toString(fieldValue); }

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public ChannelId getChannelId(String keyStr) { if( chanMap.containsKey(keyStr)) { System.out.println("Found the channelID: "); return (ChannelId)(chanMap.get(keyStr)); } else { System.out.println("The channelID is not Found"); return null; } }

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public ChannelId getChannelId(String keyStr) { if( chanMap.containsKey(keyStr)) { System.out.println("Found the channelID: "); return (ChannelId)(chanMap.get(keyStr)); } else { System.out.println("The channelID is not Found"); return null; } }

public ChannelId getChannelId(String keyStr) { if( chanMap.containsKey(keyStr)) { System.out.println("Found the channelID: "); return (ChannelId)(chanMap.get(keyStr)); ChannelId foundChannelId = null; Iterator it = chanIdMap.keySet().iterator(); while (it.hasNext()) { java.lang.Object key = it.next(); String stkey = (String)key; if(stkey.equals(keyStr)) { System.out.println("Found the channelID: "+stkey); foundChannelId = (ChannelId)(chanIdMap.get(keyStr)); } } if(foundChannelId==null) System.out.println(keyStr + "'s ChannelId could not be found."); return foundChannelId; else { System.out.println("The channelID is not Found"); return null; ChannelId foundChannelId = null; Iterator it = chanIdMap.keySet().iterator(); while (it.hasNext()) { java.lang.Object key = it.next(); String stkey = (String)key; if(stkey.equals(keyStr)) { System.out.println("Found the channelID: "+stkey); foundChannelId = (ChannelId)(chanIdMap.get(keyStr)); } } if(foundChannelId==null) System.out.println(keyStr + "'s ChannelId could not be found."); return foundChannelId; ChannelId foundChannelId = null; Iterator it = chanIdMap.keySet().iterator(); while (it.hasNext()) { java.lang.Object key = it.next(); String stkey = (String)key; if(stkey.equals(keyStr)) { System.out.println("Found the channelID: "+stkey); foundChannelId = (ChannelId)(chanIdMap.get(keyStr)); } } if(foundChannelId==null) System.out.println(keyStr + "'s ChannelId could not be found."); return foundChannelId;

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public String doAction(HttpServletRequest request, HttpServletResponse response, BwSession sess, BwActionFormBase form) throws Throwable { if (form.getGuest()) { return "noAccess"; // First line of defence } CalSvcI svc = form.getCalSvcI(); BwPreferences prefs; String str = request.getParameter("user"); if (str != null) { if (!form.getUserAuth().isSuperUser()) { return "noAccess"; // First line of defence } BwUser user = svc.findUser(str); if (user == null) { form.getErr().emit("org.bedework.client.error.nosuchuserid", str); return "notFound"; } prefs = svc.getUserPrefs(user); } else { prefs = svc.getUserPrefs(); } form.setUserPreferences(prefs); return "success"; }

public String doAction(HttpServletRequest request, HttpServletResponse response, BwSession sess, BwActionFormBase form) throws Throwable { if (!form.getUserAuth().isSuperUser()) { return "noAccess"; // First line of defence } CalSvcI svc = form.getCalSvcI(); BwPreferences prefs; String str = request.getParameter("user"); if (str != null) { if (!form.getUserAuth().isSuperUser()) { return "noAccess"; // First line of defence } BwUser user = svc.findUser(str); if (user == null) { form.getErr().emit("org.bedework.client.error.nosuchuserid", str); return "notFound"; } prefs = svc.getUserPrefs(user); } else { prefs = svc.getUserPrefs(); } form.setUserPreferences(prefs); return "success"; }

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public String doAction(HttpServletRequest request, HttpServletResponse response, BwSession sess, BwActionFormBase form) throws Throwable { if (form.getGuest()) { return "noAccess"; // First line of defence } CalSvcI svc = form.getCalSvcI(); BwPreferences prefs; String str = request.getParameter("user"); if (str != null) { if (!form.getUserAuth().isSuperUser()) { return "noAccess"; // First line of defence } BwUser user = svc.findUser(str); if (user == null) { form.getErr().emit("org.bedework.client.error.nosuchuserid", str); return "notFound"; } prefs = svc.getUserPrefs(user); } else { prefs = svc.getUserPrefs(); } form.setUserPreferences(prefs); return "success"; }

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public String doAction(HttpServletRequest request, HttpServletResponse response, BwSession sess, BwActionFormBase form) throws Throwable { if (form.getGuest()) { return "noAccess"; // First line of defence } CalSvcI svc = form.getCalSvcI(); BwPreferences prefs; String str = request.getParameter("user"); if (str != null) { if (!form.getUserAuth().isSuperUser()) { return "noAccess"; // First line of defence } BwUser user = svc.findUser(str); if (user == null) { form.getErr().emit("org.bedework.client.error.nosuchuserid", str); return "notFound"; } prefs = svc.getUserPrefs(user); } else { prefs = svc.getUserPrefs(); } form.setUserPreferences(prefs); return "success"; }

public String doAction(HttpServletRequest request, HttpServletResponse response, BwSession sess, BwActionFormBase form) throws Throwable { if (form.getGuest()) { return "noAccess"; // First line of defence } CalSvcI svc = form.getCalSvcI(); BwPreferences prefs; String str = request.getParameter("user"); if (str != null) { if (!form.getUserAuth().isSuperUser()) { return "noAccess"; // First line of defence } BwUser user = svc.findUser(str); if (user == null) { form.getErr().emit("org.bedework.client.error.nosuchuserid", str); return "notFound"; } prefs = svc.getUserPrefs(user); } else { prefs = svc.getUserPrefs(); } BwUser user = svc.findUser(str); if (user == null) { form.getErr().emit("org.bedework.client.error.nosuchuserid", str); return "notFound"; } form.setUserPreferences(svc.getUserPrefs(user)); return "success"; }

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public static edu.iris.Fissures.Time getFissuresTime(Element element) { Date startTime = Calendar.getInstance().getTime(); NodeList nodeList = element.getChildNodes(); String date_time = ""; int leap_seconds_version = 0; for(int counter = 0; counter < nodeList.getLength(); counter++) { if(nodeList.item(counter) instanceof Element) { Element elem = (Element)nodeList.item(counter); if(elem.getNodeName().equals("date_time")) { System.out.println(" THE VALUE is "+XMLUtil.getText(elem)); date_time = XMLUtil.getText(elem); } else if(elem.getNodeName().equals("leap_seconds_version")) { leap_seconds_version = Integer.parseInt(XMLUtil.getText(elem)); } } //String date_time = XMLUtil.evalString(element, "date_time"); //int leap_seconds_version = Integer.parseInt(XMLUtil.evalString(element,"leap_seconds_version")); } Date endTime = Calendar.getInstance().getTime(); System.out.println("THEEE TIME TAKEN FOR getFISSURESTIME is *&&&&&&&&&&&&&&&&&&&********"+(endTime.getTime() - startTime.getTime())); return new edu.iris.Fissures.Time(date_time, leap_seconds_version); }

public static edu.iris.Fissures.Time getFissuresTime(Element element) { Date startTime = Calendar.getInstance().getTime(); NodeList nodeList = element.getChildNodes(); String date_time = ""; int leap_seconds_version = 0; for(int counter = 0; counter < nodeList.getLength(); counter++) { if(nodeList.item(counter) instanceof Element) { Element elem = (Element)nodeList.item(counter); if(elem.getNodeName().equals("date_time")) { System.out.println(" THE VALUE is "+XMLUtil.getText(elem)); date_time = XMLUtil.getText(elem); } else if(elem.getNodeName().equals("leap_seconds_version")) { leap_seconds_version = Integer.parseInt(XMLUtil.getText(elem)); } } //String date_time = XMLUtil.evalString(element, "date_time"); //int leap_seconds_version = Integer.parseInt(XMLUtil.evalString(element,"leap_seconds_version")); } Date endTime = Calendar.getInstance().getTime(); return new edu.iris.Fissures.Time(date_time, leap_seconds_version); }

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public abstract String doAction(HttpServletRequest request, BwActionForm form) throws Throwable;

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public int sort(DataSetSeismogram seismogram){ DataSetSeismogram[] dss = {seismogram}; layoutConfig.add(dss); Iterator it = layoutConfig.generateLayoutEvent().iterator(); int i = 0; while(it.hasNext()){ if(it.next().toString().equals(seismogram.toString())){ return i; } i++; } return 0; }

public int sort(DataSetSeismogram seismogram){ DataSetSeismogram[] dss = {seismogram}; layoutConfig.add(dss); Iterator it = layoutConfig.generateLayoutEvent().iterator(); int i = 0; while(it.hasNext()){ DataSetSeismogram current = ((LayoutData)it.next()).getSeis(); if(current.equals(seismogram)){ return i; } i++; } return 0; }

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public synchronized LayoutEvent generateLayoutEvent(){ DataSetSeismogram[] seis = getSeismograms(); if(seis.length > 0){ List orderedSeis = new ArrayList(seis.length); orderedSeis.add(0, seis[0]); double minDistBetween = Double.POSITIVE_INFINITY; for (int i = 1; i < seis.length; i++){ DataSetSeismogram curSeis = seis[i]; double curSeisDelt = ((QuantityImpl)distanceMap.get(curSeis)).getValue(); ListIterator orIt = orderedSeis.listIterator(); boolean added = false; while(orIt.hasNext()){ DataSetSeismogram orSeis = (DataSetSeismogram)orIt.next(); double orSeisDelt = ((QuantityImpl)distanceMap.get(orSeis)).getValue(); if(curSeisDelt < orSeisDelt){ orIt.previous(); orIt.add(curSeis); added = true; break; } double distDiff = Math.abs(orSeisDelt - curSeisDelt); if(distDiff != 0 && distDiff < minDistBetween){ minDistBetween = distDiff; } } if(!added){ orderedSeis.add(curSeis); } } if(minDistBetween == Double.POSITIVE_INFINITY){//if minDistBetween hasn't changed, there is only one seis LayoutData[] data = { new LayoutData(seis[0], 0.0, 1.0)}; return new LayoutEvent(data, LayoutEvent.ONE_DEGREE); } double offset = minDistBetween * scale/2; double startDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(0))).getValue() - offset; double endDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(orderedSeis.size() - 1))).getValue() + offset; double totalDistance = endDist - startDist; double percentageOffset = offset/totalDistance; LayoutData[] data = new LayoutData[seis.length]; for (int i = 0; i < data.length; i++){ DataSetSeismogram cur = (DataSetSeismogram)orderedSeis.get(i); double curDist = ((QuantityImpl)distanceMap.get(cur)).getValue(); double centerPercentage = (curDist - startDist)/totalDistance; data[i] = new LayoutData(cur, centerPercentage - percentageOffset, centerPercentage + percentageOffset); } UnitRangeImpl range = new UnitRangeImpl(startDist, endDist, UnitImpl.DEGREE); return new LayoutEvent(data, range); } return LayoutEvent.EMPTY_EVENT; }

public synchronized LayoutEvent generateLayoutEvent(){ DataSetSeismogram[] seis = getSeismograms(); if(seis.length > 0){ List orderedSeis = new ArrayList(seis.length); orderedSeis.add(seis[0]); double minDistBetween = Double.POSITIVE_INFINITY; for (int i = 1; i < seis.length; i++){ DataSetSeismogram curSeis = seis[i]; double curSeisDelt = ((QuantityImpl)distanceMap.get(curSeis)).getValue(); ListIterator orIt = orderedSeis.listIterator(); boolean added = false; while(orIt.hasNext()){ DataSetSeismogram orSeis = (DataSetSeismogram)orIt.next(); double orSeisDelt = ((QuantityImpl)distanceMap.get(orSeis)).getValue(); if(curSeisDelt < orSeisDelt){ orIt.previous(); orIt.add(curSeis); added = true; break; } double distDiff = Math.abs(orSeisDelt - curSeisDelt); if(distDiff != 0 && distDiff < minDistBetween){ minDistBetween = distDiff; } } if(!added){ orderedSeis.add(curSeis); } } if(minDistBetween == Double.POSITIVE_INFINITY){//if minDistBetween hasn't changed, there is only one seis LayoutData[] data = { new LayoutData(seis[0], 0.0, 1.0)}; return new LayoutEvent(data, LayoutEvent.ONE_DEGREE); } double offset = minDistBetween * scale/2; double startDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(0))).getValue() - offset; double endDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(orderedSeis.size() - 1))).getValue() + offset; double totalDistance = endDist - startDist; double percentageOffset = offset/totalDistance; LayoutData[] data = new LayoutData[seis.length]; for (int i = 0; i < data.length; i++){ DataSetSeismogram cur = (DataSetSeismogram)orderedSeis.get(i); double curDist = ((QuantityImpl)distanceMap.get(cur)).getValue(); double centerPercentage = (curDist - startDist)/totalDistance; data[i] = new LayoutData(cur, centerPercentage - percentageOffset, centerPercentage + percentageOffset); } UnitRangeImpl range = new UnitRangeImpl(startDist, endDist, UnitImpl.DEGREE); return new LayoutEvent(data, range); } return LayoutEvent.EMPTY_EVENT; }

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public synchronized LayoutEvent generateLayoutEvent(){ DataSetSeismogram[] seis = getSeismograms(); if(seis.length > 0){ List orderedSeis = new ArrayList(seis.length); orderedSeis.add(0, seis[0]); double minDistBetween = Double.POSITIVE_INFINITY; for (int i = 1; i < seis.length; i++){ DataSetSeismogram curSeis = seis[i]; double curSeisDelt = ((QuantityImpl)distanceMap.get(curSeis)).getValue(); ListIterator orIt = orderedSeis.listIterator(); boolean added = false; while(orIt.hasNext()){ DataSetSeismogram orSeis = (DataSetSeismogram)orIt.next(); double orSeisDelt = ((QuantityImpl)distanceMap.get(orSeis)).getValue(); if(curSeisDelt < orSeisDelt){ orIt.previous(); orIt.add(curSeis); added = true; break; } double distDiff = Math.abs(orSeisDelt - curSeisDelt); if(distDiff != 0 && distDiff < minDistBetween){ minDistBetween = distDiff; } } if(!added){ orderedSeis.add(curSeis); } } if(minDistBetween == Double.POSITIVE_INFINITY){//if minDistBetween hasn't changed, there is only one seis LayoutData[] data = { new LayoutData(seis[0], 0.0, 1.0)}; return new LayoutEvent(data, LayoutEvent.ONE_DEGREE); } double offset = minDistBetween * scale/2; double startDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(0))).getValue() - offset; double endDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(orderedSeis.size() - 1))).getValue() + offset; double totalDistance = endDist - startDist; double percentageOffset = offset/totalDistance; LayoutData[] data = new LayoutData[seis.length]; for (int i = 0; i < data.length; i++){ DataSetSeismogram cur = (DataSetSeismogram)orderedSeis.get(i); double curDist = ((QuantityImpl)distanceMap.get(cur)).getValue(); double centerPercentage = (curDist - startDist)/totalDistance; data[i] = new LayoutData(cur, centerPercentage - percentageOffset, centerPercentage + percentageOffset); } UnitRangeImpl range = new UnitRangeImpl(startDist, endDist, UnitImpl.DEGREE); return new LayoutEvent(data, range); } return LayoutEvent.EMPTY_EVENT; }

public synchronized LayoutEvent generateLayoutEvent(){ DataSetSeismogram[] seis = getSeismograms(); if(seis.length > 0){ List orderedSeis = new ArrayList(seis.length); orderedSeis.add(0, seis[0]); double minDistBetween = Double.POSITIVE_INFINITY; for (int i = 1; i < seis.length; i++){ DataSetSeismogram curSeis = seis[i]; double curSeisDelt = ((QuantityImpl)distanceMap.get(curSeis)).getValue(); ListIterator orIt = orderedSeis.listIterator(); boolean added = false; while(orIt.hasNext() && !added){ DataSetSeismogram orSeis = (DataSetSeismogram)orIt.next(); double orSeisDelt = ((QuantityImpl)distanceMap.get(orSeis)).getValue(); if(curSeisDelt < orSeisDelt){ orIt.previous(); orIt.add(curSeis); added = true; break; } double distDiff = Math.abs(orSeisDelt - curSeisDelt); if(distDiff != 0 && distDiff < minDistBetween){ minDistBetween = distDiff; } } if(!added){ orderedSeis.add(curSeis); } } if(minDistBetween == Double.POSITIVE_INFINITY){//if minDistBetween hasn't changed, there is only one seis LayoutData[] data = { new LayoutData(seis[0], 0.0, 1.0)}; return new LayoutEvent(data, LayoutEvent.ONE_DEGREE); } double offset = minDistBetween * scale/2; double startDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(0))).getValue() - offset; double endDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(orderedSeis.size() - 1))).getValue() + offset; double totalDistance = endDist - startDist; double percentageOffset = offset/totalDistance; LayoutData[] data = new LayoutData[seis.length]; for (int i = 0; i < data.length; i++){ DataSetSeismogram cur = (DataSetSeismogram)orderedSeis.get(i); double curDist = ((QuantityImpl)distanceMap.get(cur)).getValue(); double centerPercentage = (curDist - startDist)/totalDistance; data[i] = new LayoutData(cur, centerPercentage - percentageOffset, centerPercentage + percentageOffset); } UnitRangeImpl range = new UnitRangeImpl(startDist, endDist, UnitImpl.DEGREE); return new LayoutEvent(data, range); } return LayoutEvent.EMPTY_EVENT; }

1,117,389

public synchronized LayoutEvent generateLayoutEvent(){ DataSetSeismogram[] seis = getSeismograms(); if(seis.length > 0){ List orderedSeis = new ArrayList(seis.length); orderedSeis.add(0, seis[0]); double minDistBetween = Double.POSITIVE_INFINITY; for (int i = 1; i < seis.length; i++){ DataSetSeismogram curSeis = seis[i]; double curSeisDelt = ((QuantityImpl)distanceMap.get(curSeis)).getValue(); ListIterator orIt = orderedSeis.listIterator(); boolean added = false; while(orIt.hasNext()){ DataSetSeismogram orSeis = (DataSetSeismogram)orIt.next(); double orSeisDelt = ((QuantityImpl)distanceMap.get(orSeis)).getValue(); if(curSeisDelt < orSeisDelt){ orIt.previous(); orIt.add(curSeis); added = true; break; } double distDiff = Math.abs(orSeisDelt - curSeisDelt); if(distDiff != 0 && distDiff < minDistBetween){ minDistBetween = distDiff; } } if(!added){ orderedSeis.add(curSeis); } } if(minDistBetween == Double.POSITIVE_INFINITY){//if minDistBetween hasn't changed, there is only one seis LayoutData[] data = { new LayoutData(seis[0], 0.0, 1.0)}; return new LayoutEvent(data, LayoutEvent.ONE_DEGREE); } double offset = minDistBetween * scale/2; double startDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(0))).getValue() - offset; double endDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(orderedSeis.size() - 1))).getValue() + offset; double totalDistance = endDist - startDist; double percentageOffset = offset/totalDistance; LayoutData[] data = new LayoutData[seis.length]; for (int i = 0; i < data.length; i++){ DataSetSeismogram cur = (DataSetSeismogram)orderedSeis.get(i); double curDist = ((QuantityImpl)distanceMap.get(cur)).getValue(); double centerPercentage = (curDist - startDist)/totalDistance; data[i] = new LayoutData(cur, centerPercentage - percentageOffset, centerPercentage + percentageOffset); } UnitRangeImpl range = new UnitRangeImpl(startDist, endDist, UnitImpl.DEGREE); return new LayoutEvent(data, range); } return LayoutEvent.EMPTY_EVENT; }

public synchronized LayoutEvent generateLayoutEvent(){ DataSetSeismogram[] seis = getSeismograms(); if(seis.length > 0){ List orderedSeis = new ArrayList(seis.length); orderedSeis.add(0, seis[0]); double minDistBetween = Double.POSITIVE_INFINITY; for (int i = 1; i < seis.length; i++){ DataSetSeismogram curSeis = seis[i]; double curSeisDelt = ((QuantityImpl)distanceMap.get(curSeis)).getValue(); ListIterator orIt = orderedSeis.listIterator(); boolean added = false; while(orIt.hasNext()){ DataSetSeismogram orSeis = (DataSetSeismogram)orIt.next(); double orSeisDelt = ((QuantityImpl)distanceMap.get(orSeis)).getValue(); double distDiff = orSeisDelt - curSeisDelt; if(distDiff > 0){ orIt.previous(); orIt.add(curSeis); added = true; break; } double distDiff = Math.abs(orSeisDelt - curSeisDelt); if(distDiff != 0 && distDiff < minDistBetween){ minDistBetween = distDiff; } } if(!added){ orderedSeis.add(curSeis); } } if(minDistBetween == Double.POSITIVE_INFINITY){//if minDistBetween hasn't changed, there is only one seis LayoutData[] data = { new LayoutData(seis[0], 0.0, 1.0)}; return new LayoutEvent(data, LayoutEvent.ONE_DEGREE); } double offset = minDistBetween * scale/2; double startDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(0))).getValue() - offset; double endDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(orderedSeis.size() - 1))).getValue() + offset; double totalDistance = endDist - startDist; double percentageOffset = offset/totalDistance; LayoutData[] data = new LayoutData[seis.length]; for (int i = 0; i < data.length; i++){ DataSetSeismogram cur = (DataSetSeismogram)orderedSeis.get(i); double curDist = ((QuantityImpl)distanceMap.get(cur)).getValue(); double centerPercentage = (curDist - startDist)/totalDistance; data[i] = new LayoutData(cur, centerPercentage - percentageOffset, centerPercentage + percentageOffset); } UnitRangeImpl range = new UnitRangeImpl(startDist, endDist, UnitImpl.DEGREE); return new LayoutEvent(data, range); } return LayoutEvent.EMPTY_EVENT; }

1,117,390

public synchronized LayoutEvent generateLayoutEvent(){ DataSetSeismogram[] seis = getSeismograms(); if(seis.length > 0){ List orderedSeis = new ArrayList(seis.length); orderedSeis.add(0, seis[0]); double minDistBetween = Double.POSITIVE_INFINITY; for (int i = 1; i < seis.length; i++){ DataSetSeismogram curSeis = seis[i]; double curSeisDelt = ((QuantityImpl)distanceMap.get(curSeis)).getValue(); ListIterator orIt = orderedSeis.listIterator(); boolean added = false; while(orIt.hasNext()){ DataSetSeismogram orSeis = (DataSetSeismogram)orIt.next(); double orSeisDelt = ((QuantityImpl)distanceMap.get(orSeis)).getValue(); if(curSeisDelt < orSeisDelt){ orIt.previous(); orIt.add(curSeis); added = true; break; } double distDiff = Math.abs(orSeisDelt - curSeisDelt); if(distDiff != 0 && distDiff < minDistBetween){ minDistBetween = distDiff; } } if(!added){ orderedSeis.add(curSeis); } } if(minDistBetween == Double.POSITIVE_INFINITY){//if minDistBetween hasn't changed, there is only one seis LayoutData[] data = { new LayoutData(seis[0], 0.0, 1.0)}; return new LayoutEvent(data, LayoutEvent.ONE_DEGREE); } double offset = minDistBetween * scale/2; double startDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(0))).getValue() - offset; double endDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(orderedSeis.size() - 1))).getValue() + offset; double totalDistance = endDist - startDist; double percentageOffset = offset/totalDistance; LayoutData[] data = new LayoutData[seis.length]; for (int i = 0; i < data.length; i++){ DataSetSeismogram cur = (DataSetSeismogram)orderedSeis.get(i); double curDist = ((QuantityImpl)distanceMap.get(cur)).getValue(); double centerPercentage = (curDist - startDist)/totalDistance; data[i] = new LayoutData(cur, centerPercentage - percentageOffset, centerPercentage + percentageOffset); } UnitRangeImpl range = new UnitRangeImpl(startDist, endDist, UnitImpl.DEGREE); return new LayoutEvent(data, range); } return LayoutEvent.EMPTY_EVENT; }

public synchronized LayoutEvent generateLayoutEvent(){ DataSetSeismogram[] seis = getSeismograms(); if(seis.length > 0){ List orderedSeis = new ArrayList(seis.length); orderedSeis.add(0, seis[0]); double minDistBetween = Double.POSITIVE_INFINITY; for (int i = 1; i < seis.length; i++){ DataSetSeismogram curSeis = seis[i]; double curSeisDelt = ((QuantityImpl)distanceMap.get(curSeis)).getValue(); ListIterator orIt = orderedSeis.listIterator(); boolean added = false; while(orIt.hasNext()){ DataSetSeismogram orSeis = (DataSetSeismogram)orIt.next(); double orSeisDelt = ((QuantityImpl)distanceMap.get(orSeis)).getValue(); if(curSeisDelt < orSeisDelt){ orIt.previous(); orIt.add(curSeis); added = true; } double distDiff = Math.abs(orSeisDelt - curSeisDelt); if(distDiff != 0 && distDiff < minDistBetween){ minDistBetween = distDiff; } } if(!added){ orderedSeis.add(curSeis); } } if(minDistBetween == Double.POSITIVE_INFINITY){//if minDistBetween hasn't changed, there is only one seis LayoutData[] data = { new LayoutData(seis[0], 0.0, 1.0)}; return new LayoutEvent(data, LayoutEvent.ONE_DEGREE); } double offset = minDistBetween * scale/2; double startDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(0))).getValue() - offset; double endDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(orderedSeis.size() - 1))).getValue() + offset; double totalDistance = endDist - startDist; double percentageOffset = offset/totalDistance; LayoutData[] data = new LayoutData[seis.length]; for (int i = 0; i < data.length; i++){ DataSetSeismogram cur = (DataSetSeismogram)orderedSeis.get(i); double curDist = ((QuantityImpl)distanceMap.get(cur)).getValue(); double centerPercentage = (curDist - startDist)/totalDistance; data[i] = new LayoutData(cur, centerPercentage - percentageOffset, centerPercentage + percentageOffset); } UnitRangeImpl range = new UnitRangeImpl(startDist, endDist, UnitImpl.DEGREE); return new LayoutEvent(data, range); } return LayoutEvent.EMPTY_EVENT; }

1,117,391

public synchronized LayoutEvent generateLayoutEvent(){ DataSetSeismogram[] seis = getSeismograms(); if(seis.length > 0){ List orderedSeis = new ArrayList(seis.length); orderedSeis.add(0, seis[0]); double minDistBetween = Double.POSITIVE_INFINITY; for (int i = 1; i < seis.length; i++){ DataSetSeismogram curSeis = seis[i]; double curSeisDelt = ((QuantityImpl)distanceMap.get(curSeis)).getValue(); ListIterator orIt = orderedSeis.listIterator(); boolean added = false; while(orIt.hasNext()){ DataSetSeismogram orSeis = (DataSetSeismogram)orIt.next(); double orSeisDelt = ((QuantityImpl)distanceMap.get(orSeis)).getValue(); if(curSeisDelt < orSeisDelt){ orIt.previous(); orIt.add(curSeis); added = true; break; } double distDiff = Math.abs(orSeisDelt - curSeisDelt); if(distDiff != 0 && distDiff < minDistBetween){ minDistBetween = distDiff; } } if(!added){ orderedSeis.add(curSeis); } } if(minDistBetween == Double.POSITIVE_INFINITY){//if minDistBetween hasn't changed, there is only one seis LayoutData[] data = { new LayoutData(seis[0], 0.0, 1.0)}; return new LayoutEvent(data, LayoutEvent.ONE_DEGREE); } double offset = minDistBetween * scale/2; double startDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(0))).getValue() - offset; double endDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(orderedSeis.size() - 1))).getValue() + offset; double totalDistance = endDist - startDist; double percentageOffset = offset/totalDistance; LayoutData[] data = new LayoutData[seis.length]; for (int i = 0; i < data.length; i++){ DataSetSeismogram cur = (DataSetSeismogram)orderedSeis.get(i); double curDist = ((QuantityImpl)distanceMap.get(cur)).getValue(); double centerPercentage = (curDist - startDist)/totalDistance; data[i] = new LayoutData(cur, centerPercentage - percentageOffset, centerPercentage + percentageOffset); } UnitRangeImpl range = new UnitRangeImpl(startDist, endDist, UnitImpl.DEGREE); return new LayoutEvent(data, range); } return LayoutEvent.EMPTY_EVENT; }

1,117,392

public synchronized LayoutEvent generateLayoutEvent(){ DataSetSeismogram[] seis = getSeismograms(); if(seis.length > 0){ List orderedSeis = new ArrayList(seis.length); orderedSeis.add(0, seis[0]); double minDistBetween = Double.POSITIVE_INFINITY; for (int i = 1; i < seis.length; i++){ DataSetSeismogram curSeis = seis[i]; double curSeisDelt = ((QuantityImpl)distanceMap.get(curSeis)).getValue(); ListIterator orIt = orderedSeis.listIterator(); boolean added = false; while(orIt.hasNext()){ DataSetSeismogram orSeis = (DataSetSeismogram)orIt.next(); double orSeisDelt = ((QuantityImpl)distanceMap.get(orSeis)).getValue(); if(curSeisDelt < orSeisDelt){ orIt.previous(); orIt.add(curSeis); added = true; break; } double distDiff = Math.abs(orSeisDelt - curSeisDelt); if(distDiff != 0 && distDiff < minDistBetween){ minDistBetween = distDiff; } } if(!added){ orderedSeis.add(curSeis); } } if(minDistBetween == Double.POSITIVE_INFINITY){//if minDistBetween hasn't changed, there is only one seis LayoutData[] data = { new LayoutData(seis[0], 0.0, 1.0)}; return new LayoutEvent(data, LayoutEvent.ONE_DEGREE); } double offset = minDistBetween * scale/2; double startDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(0))).getValue() - offset; double endDist = ((QuantityImpl)distanceMap.get(orderedSeis.get(orderedSeis.size() - 1))).getValue() + offset; double totalDistance = endDist - startDist; double percentageOffset = offset/totalDistance; LayoutData[] data = new LayoutData[seis.length]; for (int i = 0; i < data.length; i++){ DataSetSeismogram cur = (DataSetSeismogram)orderedSeis.get(i); double curDist = ((QuantityImpl)distanceMap.get(cur)).getValue(); double centerPercentage = (curDist - startDist)/totalDistance; data[i] = new LayoutData(cur, centerPercentage - percentageOffset, centerPercentage + percentageOffset); } UnitRangeImpl range = new UnitRangeImpl(startDist, endDist, UnitImpl.DEGREE); return new LayoutEvent(data, range); } return LayoutEvent.EMPTY_EVENT; }

1,117,393

public BasicSeismogramDisplay(DataSetSeismogram[] seismos, String[] names, VerticalSeismogramDisplay parent)throws IllegalArgumentException{ this(seismos, new BasicTimeConfig(seismos), new RMeanAmpConfig(seismos), names, parent); }

1,117,394

public void add(DataSetSeismogram[] seismos, String[] names){ registrar.add(seismos); for(int i = 0; i < seismos.length; i++){ if(seismos[i] != null){ seismograms.add(seismos[i]); SeismogramShape newPlotter; if (autoColor) { newPlotter = new SeismogramShape(seismos[i], seisColors[seisCount%seisColors.length], names[i]); }else { newPlotter = new SeismogramShape(seismos[i], Color.blue, names[i]); } // end of else if(parent != null){ newPlotter.setVisibility(parent.getOriginalVisibility()); } plotters.add(seisCount, newPlotter); seisCount++; } } Iterator e = globalFilters.iterator(); while(e.hasNext()){ applyFilter((ColoredFilter)e.next()); } seismogramArray = null; }

public void add(DataSetSeismogram[] seismos){ registrar.add(seismos); for(int i = 0; i < seismos.length; i++){ if(seismos[i] != null){ seismograms.add(seismos[i]); SeismogramShape newPlotter; if (autoColor) { newPlotter = new SeismogramShape(seismos[i], seisColors[seisCount%seisColors.length], names[i]); }else { newPlotter = new SeismogramShape(seismos[i], Color.blue, names[i]); } // end of else if(parent != null){ newPlotter.setVisibility(parent.getOriginalVisibility()); } plotters.add(seisCount, newPlotter); seisCount++; } } Iterator e = globalFilters.iterator(); while(e.hasNext()){ applyFilter((ColoredFilter)e.next()); } seismogramArray = null; }

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public void add(DataSetSeismogram[] seismos, String[] names){ registrar.add(seismos); for(int i = 0; i < seismos.length; i++){ if(seismos[i] != null){ seismograms.add(seismos[i]); SeismogramShape newPlotter; if (autoColor) { newPlotter = new SeismogramShape(seismos[i], seisColors[seisCount%seisColors.length], names[i]); }else { newPlotter = new SeismogramShape(seismos[i], Color.blue, names[i]); } // end of else if(parent != null){ newPlotter.setVisibility(parent.getOriginalVisibility()); } plotters.add(seisCount, newPlotter); seisCount++; } } Iterator e = globalFilters.iterator(); while(e.hasNext()){ applyFilter((ColoredFilter)e.next()); } seismogramArray = null; }

public void add(DataSetSeismogram[] seismos, String[] names){ registrar.add(seismos); for(int i = 0; i < seismos.length; i++){ if(seismos[i] != null){ seismograms.add(seismos[i]); SeismogramShape newPlotter; if (autoColor) { newPlotter = new SeismogramShape(seismos[i], seisColors[seisCount%seisColors.length]); }else { newPlotter = new SeismogramShape(seismos[i], Color.blue, names[i]); } // end of else if(parent != null){ newPlotter.setVisibility(parent.getOriginalVisibility()); } plotters.add(seisCount, newPlotter); seisCount++; } } Iterator e = globalFilters.iterator(); while(e.hasNext()){ applyFilter((ColoredFilter)e.next()); } seismogramArray = null; }

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public void add(DataSetSeismogram[] seismos, String[] names){ registrar.add(seismos); for(int i = 0; i < seismos.length; i++){ if(seismos[i] != null){ seismograms.add(seismos[i]); SeismogramShape newPlotter; if (autoColor) { newPlotter = new SeismogramShape(seismos[i], seisColors[seisCount%seisColors.length], names[i]); }else { newPlotter = new SeismogramShape(seismos[i], Color.blue, names[i]); } // end of else if(parent != null){ newPlotter.setVisibility(parent.getOriginalVisibility()); } plotters.add(seisCount, newPlotter); seisCount++; } } Iterator e = globalFilters.iterator(); while(e.hasNext()){ applyFilter((ColoredFilter)e.next()); } seismogramArray = null; }

public void add(DataSetSeismogram[] seismos, String[] names){ registrar.add(seismos); for(int i = 0; i < seismos.length; i++){ if(seismos[i] != null){ seismograms.add(seismos[i]); SeismogramShape newPlotter; if (autoColor) { newPlotter = new SeismogramShape(seismos[i], seisColors[seisCount%seisColors.length], names[i]); }else { newPlotter = new SeismogramShape(seismos[i], Color.blue); } // end of else if(parent != null){ newPlotter.setVisibility(parent.getOriginalVisibility()); } plotters.add(seisCount, newPlotter); seisCount++; } } Iterator e = globalFilters.iterator(); while(e.hasNext()){ applyFilter((ColoredFilter)e.next()); } seismogramArray = null; }

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public NamedColor(int r, int b, int g, int a, String name){ super(r, g, b, a); this.name = name; }

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TimeScaleCalc (int totalPixels, TimeConfigRegistrar tr){ this.totalPixels = totalPixels; this.timeRegistrar = new TimeConfigRegistrar(tr, this); setTimes(); calculateTicks(); }

TimeScaleCalc (int totalPixels, TimeConfigRegistrar tr){ this.totalPixels = totalPixels; this.timeRegistrar = new TimeConfigRegistrar(tr, this); setTimes(); }

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public LeftTitleBorder(String title) { top = 0; left = 10; right = 0; bottom = 0; this.title = title; isChannelTitle = false; }

public LeftTitleBorder(String title) { top = 0; left = 15; right = 0; bottom = 0; this.title = title; isChannelTitle = false; }

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public void removeSelectionDisplay(){ if(selectionDisplay != null){ Iterator e = basicDisplays.iterator(); while(e.hasNext()){ ((BasicSeismogramDisplay)e.next()).clearRegSelections(); } selectionWindow.dispose(); selectionDisplay.parent = null; selectionDisplay.removeAll(); selectionDisplay = null; } }

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public void remove3CSelectionDisplay(){ if(threeSelectionDisplay != null){ Iterator e = basicDisplays.iterator(); while(e.hasNext()){ ((BasicSeismogramDisplay)e.next()).clear3CSelections(); } threeSelectionWindow.dispose(); threeSelectionDisplay.parent = null; threeSelectionDisplay.removeAll(); threeSelectionDisplay = null; } }

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public void remove3CSelectionDisplay(){ if(threeSelectionDisplay != null){ Iterator e = basicDisplays.iterator(); while(e.hasNext()){ ((BasicSeismogramDisplay)e.next()).clear3CSelections(); } threeSelectionWindow.dispose(); threeSelectionDisplay.parent = null; threeSelectionDisplay.removeAll(); threeSelectionDisplay = null; } }

public void remove3CSelectionDisplay(){ if(threeSelectionDisplay != null){ Iterator e = basicDisplays.iterator(); while(e.hasNext()){ ((BasicSeismogramDisplay)e.next()).clear3CSelections(); } threeSelectionWindow.dispose(); threeSelectionWindow = null; threeSelectionDisplay.removeAll(); threeSelectionDisplay = null; } }

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protected void setUp() throws Exception { // JUnitDoclet begin method testcase.setUp super.setUp(); short size = 40; intTestData = new int[size]; shortTestData = new short[size]; floatTestData = new float[size]; doubleTestData = new double[size]; for (short i=0; i<size; i++) { shortTestData[i] = 1; intTestData[i] = i; floatTestData[i] = i; doubleTestData[i] = i; } // end of for (int i=0; i<intTestData.length; i++) rtrend = createInstance(); // JUnitDoclet end method testcase.setUp }

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public String doAction(HttpServletRequest request, BwActionForm form) throws Throwable { if (form.getGuest()) { return "doNothing"; } BwLocation l = form.getNewLocation(); if (l == null) { return "success"; } form.getCalSvcI().addLocation(l); form.getMsg().emit("org.bedework.message.added.locations", 1); return "success"; }

public String doAction(HttpServletRequest request, BwActionForm form) throws Throwable { if (form.getGuest()) { return "doNothing"; } BwLocation l = form.getNewLocation(); if (l == null) { return "success"; } form.getCalSvcI().addLocation(l); form.getMsg().emit("org.bedework.client.message.added.locations", 1); return "success"; }

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public Collection getEventFormatters() throws Throwable { try { getEvents(); if (eventFormatters == null) { if (events == null) { return new Vector(); } eventFormatters = new Vector(); Iterator it = events.iterator(); while (it.hasNext()) { eventFormatters.add(new EventFormatter((EventInfo)it.next(), view, calInfo, view.getTimezones())); } } } catch (Throwable t) { Logger.getLogger(this.getClass()).error("getEventFormatters", t); throw t; } return eventFormatters; }

public Collection getEventFormatters() throws Throwable { try { getEvents(); if (eventFormatters == null) { if (events == null) { return new ArrayList(); } eventFormatters = new Vector(); Iterator it = events.iterator(); while (it.hasNext()) { eventFormatters.add(new EventFormatter((EventInfo)it.next(), view, calInfo, view.getTimezones())); } } } catch (Throwable t) { Logger.getLogger(this.getClass()).error("getEventFormatters", t); throw t; } return eventFormatters; }

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public Collection getEventFormatters() throws Throwable { try { getEvents(); if (eventFormatters == null) { if (events == null) { return new Vector(); } eventFormatters = new Vector(); Iterator it = events.iterator(); while (it.hasNext()) { eventFormatters.add(new EventFormatter((EventInfo)it.next(), view, calInfo, view.getTimezones())); } } } catch (Throwable t) { Logger.getLogger(this.getClass()).error("getEventFormatters", t); throw t; } return eventFormatters; }

public Collection getEventFormatters() throws Throwable { try { getEvents(); if (eventFormatters == null) { if (events == null) { return new Vector(); } eventFormatters = new ArrayList(); Iterator it = events.iterator(); while (it.hasNext()) { eventFormatters.add(new EventFormatter((EventInfo)it.next(), view, calInfo, view.getTimezones())); } } } catch (Throwable t) { Logger.getLogger(this.getClass()).error("getEventFormatters", t); throw t; } return eventFormatters; }

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public void addDataSet(edu.sc.seis.fissuresUtil.xml.DataSet dataset, AuditInfo[] audit) { dataSetIdCache = null; if (dataset instanceof XMLDataSet) { XMLDataSet xds = (XMLDataSet)dataset; Element element = xds.getElement(); if (element.getOwnerDocument().equals(config.getOwnerDocument())) { config.appendChild(element); logger.debug("dataset append "+config.getChildNodes().getLength()); } else { // not from the same document, must clone Node copyNode = config.getOwnerDocument().importNode(element, true); config.appendChild(copyNode); logger.debug("dataset import "+config.getChildNodes().getLength()); NodeList nl = config.getChildNodes(); for (int i=0; i<nl.getLength(); i++) { logger.debug("node "+nl.item(i).getLocalName()); } // end of for (int i=0; i<nl.getLenght(); i++) } // end of else } else { logger.warn("Attempt to add non-XML dataset"); } // end of else }

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public void addParameter(String name, Object value, AuditInfo[] audit) { parameterNameCache = null; parameterCache.put(name, value); //if (value instanceof Element) { Element parameter = config.getOwnerDocument().createElement("parameter"); XMLParameter.insert(parameter, name, value); // Object cacheEvent = XMLParameter.getParameter(parameter);// if(cacheEvent instanceof edu.sc.seis.fissuresUtil.cache.CacheEvent) {// System.out.println("Instance of CaCHE EVENT -----------"); // } else {// System.out.println(" NOt an Instance of CACHE EVENT ------");// } config.appendChild(parameter); //} else { // logger.warn("Parameter is only stored in memory."); //} // end of else }

public void addParameter(String name, Object value, AuditInfo[] audit) { parameterCache.put(name, value); //if (value instanceof Element) { Element parameter = config.getOwnerDocument().createElement("parameter"); XMLParameter.insert(parameter, name, value); // Object cacheEvent = XMLParameter.getParameter(parameter);// if(cacheEvent instanceof edu.sc.seis.fissuresUtil.cache.CacheEvent) {// System.out.println("Instance of CaCHE EVENT -----------"); // } else {// System.out.println(" NOt an Instance of CACHE EVENT ------");// } config.appendChild(parameter); //} else { // logger.warn("Parameter is only stored in memory."); //} // end of else }

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public void addParameterRef(URL paramURL, String name, AuditInfo[] audit) { parameterNameCache = null; String baseStr = base.toString(); String paramStr = paramURL.toString(); if (paramStr.startsWith(baseStr)) { // use relative URL paramStr = paramStr.substring(baseStr.length()); } // end of if (paramStr.startsWith(baseStr)) //System.out.println("inside the addParameterRef"); Document doc = config.getOwnerDocument(); Element param = doc.createElement("parameterRef"); param.setAttributeNS(xlinkNS, "xlink:type", "simple"); param.setAttributeNS(xlinkNS, "xlink:href", paramStr); Text text = doc.createTextNode(name); param.appendChild(text); config.appendChild(param); }

public void addParameterRef(URL paramURL, String name, AuditInfo[] audit) { String baseStr = base.toString(); String paramStr = paramURL.toString(); if (paramStr.startsWith(baseStr)) { // use relative URL paramStr = paramStr.substring(baseStr.length()); } // end of if (paramStr.startsWith(baseStr)) //System.out.println("inside the addParameterRef"); Document doc = config.getOwnerDocument(); Element param = doc.createElement("parameterRef"); param.setAttributeNS(xlinkNS, "xlink:type", "simple"); param.setAttributeNS(xlinkNS, "xlink:href", paramStr); Text text = doc.createTextNode(name); param.appendChild(text); config.appendChild(param); }

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public void addSeismogram(LocalSeismogramImpl seis, AuditInfo[] audit) { seismogramNameCache = null; // Note this does not set the xlink, as the seis has not been saved anywhere yet. Document doc = config.getOwnerDocument(); Element localSeismogram = doc.createElement("localSeismogram");//doc.createElement("SacSeismogram"); String name =seis.getProperty(seisNameKey); if (name == null || name.length() == 0) { name = edu.iris.Fissures.network.ChannelIdUtil.toStringNoDates(seis.channel_id); } Element seismogramAttr = doc.createElement("seismogramAttr"); XMLSeismogramAttr.insert(seismogramAttr, (LocalSeismogram)seis); localSeismogram.appendChild(seismogramAttr); Element nameE = doc.createElement("name"); nameE.setNodeValue(name); localSeismogram.appendChild(nameE); Property[] props = seis.getProperties(); //System.out.println("the length of the Properties of the seismogram are "+props.length); Element propE, propNameE, propValueE; for (int i=0; i<props.length; i++) { if (props[i].name != seisNameKey) { propE = doc.createElement("property"); propNameE = doc.createElement("name"); propNameE.setNodeValue(props[i].name); propValueE = doc.createElement("value"); propValueE.setNodeValue(props[i].value); propE.appendChild(propNameE); propE.appendChild(propValueE); localSeismogram.appendChild(propE); } } config.appendChild(localSeismogram); seismogramCache.put(name, seis); logger.debug("added seis now "+getSeismogramNames().length+" seisnogram names."); //xpath = new CachedXPathAPI(xpath); logger.debug("2 added seis now "+getSeismogramNames().length+" seisnogram names."); }

public void addSeismogram(LocalSeismogramImpl seis, AuditInfo[] audit) { // Note this does not set the xlink, as the seis has not been saved anywhere yet. Document doc = config.getOwnerDocument(); Element localSeismogram = doc.createElement("localSeismogram");//doc.createElement("SacSeismogram"); String name =seis.getProperty(seisNameKey); if (name == null || name.length() == 0) { name = edu.iris.Fissures.network.ChannelIdUtil.toStringNoDates(seis.channel_id); } Element seismogramAttr = doc.createElement("seismogramAttr"); XMLSeismogramAttr.insert(seismogramAttr, (LocalSeismogram)seis); localSeismogram.appendChild(seismogramAttr); Element nameE = doc.createElement("name"); nameE.setNodeValue(name); localSeismogram.appendChild(nameE); Property[] props = seis.getProperties(); //System.out.println("the length of the Properties of the seismogram are "+props.length); Element propE, propNameE, propValueE; for (int i=0; i<props.length; i++) { if (props[i].name != seisNameKey) { propE = doc.createElement("property"); propNameE = doc.createElement("name"); propNameE.setNodeValue(props[i].name); propValueE = doc.createElement("value"); propValueE.setNodeValue(props[i].value); propE.appendChild(propNameE); propE.appendChild(propValueE); localSeismogram.appendChild(propE); } } config.appendChild(localSeismogram); seismogramCache.put(name, seis); logger.debug("added seis now "+getSeismogramNames().length+" seisnogram names."); //xpath = new CachedXPathAPI(xpath); logger.debug("2 added seis now "+getSeismogramNames().length+" seisnogram names."); }

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public void addSeismogramRef(LocalSeismogramImpl seis, URL seisURL, String name, Property[] props, ParameterRef[] parm_ids, AuditInfo[] audit) { seismogramNameCache = null; String baseStr = base.toString(); String seisStr = seisURL.toString(); if (seisStr.startsWith(baseStr)) { // use relative URL seisStr = seisStr.substring(baseStr.length()); } // end of if (seisStr.startsWith(baseStr)) Document doc = config.getOwnerDocument(); Element localSeismogram = doc.createElement("localSeismogram"); Element seismogramAttr = doc.createElement("seismogramAttr"); XMLSeismogramAttr.insert(seismogramAttr, (LocalSeismogram)seis); localSeismogram.appendChild(seismogramAttr); Element data = doc.createElement("data"); data.setAttributeNS(xlinkNS, "xlink:type", "simple"); data.setAttributeNS(xlinkNS, "xlink:href", seisStr); data.setAttribute("seisType", "sac"); //Element nameE = doc.createElement("name"); // Text text = doc.createTextNode(name); //nameE.appendChild(text); //localSeismogram.appendChild(nameE); localSeismogram.appendChild(data); /* Element propE, propNameE, propValueE; for (int i=0; i<props.length; i++) { if (props[i].name != seisNameKey) { propE = doc.createElement("property"); propNameE = doc.createElement("name"); text = doc.createTextNode(props[i].name); propNameE.appendChild(text); propValueE = doc.createElement("value"); text = doc.createTextNode(props[i].value); propValueE.appendChild(text); propE.appendChild(propNameE); propE.appendChild(propValueE); sac.appendChild(propE); } }*/ config.appendChild(localSeismogram); }

public void addSeismogramRef(LocalSeismogramImpl seis, URL seisURL, String name, Property[] props, ParameterRef[] parm_ids, AuditInfo[] audit) { String baseStr = base.toString(); String seisStr = seisURL.toString(); if (seisStr.startsWith(baseStr)) { // use relative URL seisStr = seisStr.substring(baseStr.length()); } // end of if (seisStr.startsWith(baseStr)) Document doc = config.getOwnerDocument(); Element localSeismogram = doc.createElement("localSeismogram"); Element seismogramAttr = doc.createElement("seismogramAttr"); XMLSeismogramAttr.insert(seismogramAttr, (LocalSeismogram)seis); localSeismogram.appendChild(seismogramAttr); Element data = doc.createElement("data"); data.setAttributeNS(xlinkNS, "xlink:type", "simple"); data.setAttributeNS(xlinkNS, "xlink:href", seisStr); data.setAttribute("seisType", "sac"); //Element nameE = doc.createElement("name"); // Text text = doc.createTextNode(name); //nameE.appendChild(text); //localSeismogram.appendChild(nameE); localSeismogram.appendChild(data); /* Element propE, propNameE, propValueE; for (int i=0; i<props.length; i++) { if (props[i].name != seisNameKey) { propE = doc.createElement("property"); propNameE = doc.createElement("name"); text = doc.createTextNode(props[i].name); propNameE.appendChild(text); propValueE = doc.createElement("value"); text = doc.createTextNode(props[i].value); propValueE.appendChild(text); propE.appendChild(propNameE); propE.appendChild(propValueE); sac.appendChild(propE); } }*/ config.appendChild(localSeismogram); }

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public DataSet createChildDataSet(String id, String name, String owner, AuditInfo[] audit) { dataSetIdCache = null; XMLDataSet dataset = new XMLDataSet(docBuilder, base, id, name, owner); addDataSet(dataset, audit); return dataset; }

public DataSet createChildDataSet(String id, String name, String owner, AuditInfo[] audit) { XMLDataSet dataset = new XMLDataSet(docBuilder, base, id, name, owner); addDataSet(dataset, audit); return dataset; }

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public String[] getDataSetIds() { if (dataSetIdCache == null) { dataSetIdCache = getAllAsStrings("*/@datasetid"); } // end of if (dataSetIdCache == null) return dataSetIdCache; }

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public edu.sc.seis.fissuresUtil.cache.CacheEvent getEvent() { boolean found; NodeList paramList = evalNodeList(config, "parameter"); if(paramList != null && paramList.getLength() != 0) { for(int counter = 0; counter < paramList.getLength(); counter++) { Object object = XMLParameter.getParameter((Element)paramList.item(counter)); if(object instanceof edu.sc.seis.fissuresUtil.cache.CacheEvent){ return (edu.sc.seis.fissuresUtil.cache.CacheEvent)object; } } } return null; }

public edu.sc.seis.fissuresUtil.cache.CacheEvent getEvent() { /*boolean found; NodeList paramList = evalNodeList(config, "parameter"); if(paramList != null && paramList.getLength() != 0) { for(int counter = 0; counter < paramList.getLength(); counter++) { Object object = XMLParameter.getParameter((Element)paramList.item(counter)); if(object instanceof edu.sc.seis.fissuresUtil.cache.CacheEvent){ return (edu.sc.seis.fissuresUtil.cache.CacheEvent)object; } } } return null; }

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public edu.sc.seis.fissuresUtil.cache.CacheEvent getEvent() { boolean found; NodeList paramList = evalNodeList(config, "parameter"); if(paramList != null && paramList.getLength() != 0) { for(int counter = 0; counter < paramList.getLength(); counter++) { Object object = XMLParameter.getParameter((Element)paramList.item(counter)); if(object instanceof edu.sc.seis.fissuresUtil.cache.CacheEvent){ return (edu.sc.seis.fissuresUtil.cache.CacheEvent)object; } } } return null; }

public edu.sc.seis.fissuresUtil.cache.CacheEvent getEvent() { boolean found; NodeList paramList = evalNodeList(config, "parameter"); if(paramList != null && paramList.getLength() != 0) { for(int counter = 0; counter < paramList.getLength(); counter++) { Object object = XMLParameter.getParameter((Element)paramList.item(counter)); if(object instanceof edu.sc.seis.fissuresUtil.cache.CacheEvent){ return (edu.sc.seis.fissuresUtil.cache.CacheEvent)object; } } } return null;*/ return (edu.sc.seis.fissuresUtil.cache.CacheEvent)getParameter(StdDataSetParamNames.EVENT); }

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public Object getParameter(String name) { //ChannelProxy channelProxy = new ChannelProxy(); //ChannelId[] channelIds = getChannelIds(); //channelProxy.retrieve_grouping(channelIds, channelIds[0]); ///************************************************ if (parameterCache.containsKey(name)) { return parameterCache.get(name); } // end of if (parameterCache.containsKey(name)) NodeList nList = evalNodeList(config, "parameter[name/text()="+ dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { logger.debug("getting the parameter "+name); Node n = nList.item(0); if (n instanceof Element) { return XMLParameter.getParameter((Element)n); //System.out.println("THe tag name is "+((Element)n).getTagName()); // parameterCache.put(name, n); // return (Element)n; } } else { logger.debug("THE NODE LIST IS NULL for parameter "+name); } // not a parameter, try parameterRef nList = evalNodeList(config, "parameterRef[text()="+dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { Node n = nList.item(0); if (n instanceof Element) { SimpleXLink sl = new SimpleXLink(docBuilder, (Element)n); try { Element e = sl.retrieve(); parameterCache.put(name, e); return e; } catch (Exception e) { logger.error("can't get paramterRef for "+name, e); } // end of try-catch } } logger.warn("can't find paramter for "+name); //can't find that name??? return null; }

public Object getParameter(String name) { //ChannelProxy channelProxy = new ChannelProxy(); //ChannelId[] channelIds = getChannelIds(); //channelProxy.retrieve_grouping(channelIds, channelIds[0]); ///************************************************ if (parameterCache.containsKey(name)) { return parameterCache.get(name); } // end of if (parameterCache.containsKey(name)) NodeList nList = evalNodeList(config, "parameter[name/text()="+ dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { System.out.println("getting the parameter"); Node n = nList.item(0); if (n instanceof Element) { return XMLParameter.getParameter((Element)n); //System.out.println("THe tag name is "+((Element)n).getTagName()); // parameterCache.put(name, n); // return (Element)n; } } else { logger.debug("THE NODE LIST IS NULL for parameter "+name); } // not a parameter, try parameterRef nList = evalNodeList(config, "parameterRef[text()="+dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { Node n = nList.item(0); if (n instanceof Element) { SimpleXLink sl = new SimpleXLink(docBuilder, (Element)n); try { Element e = sl.retrieve(); parameterCache.put(name, e); return e; } catch (Exception e) { logger.error("can't get paramterRef for "+name, e); } // end of try-catch } } logger.warn("can't find paramter for "+name); //can't find that name??? return null; }

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public Object getParameter(String name) { //ChannelProxy channelProxy = new ChannelProxy(); //ChannelId[] channelIds = getChannelIds(); //channelProxy.retrieve_grouping(channelIds, channelIds[0]); ///************************************************ if (parameterCache.containsKey(name)) { return parameterCache.get(name); } // end of if (parameterCache.containsKey(name)) NodeList nList = evalNodeList(config, "parameter[name/text()="+ dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { logger.debug("getting the parameter "+name); Node n = nList.item(0); if (n instanceof Element) { return XMLParameter.getParameter((Element)n); //System.out.println("THe tag name is "+((Element)n).getTagName()); // parameterCache.put(name, n); // return (Element)n; } } else { logger.debug("THE NODE LIST IS NULL for parameter "+name); } // not a parameter, try parameterRef nList = evalNodeList(config, "parameterRef[text()="+dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { Node n = nList.item(0); if (n instanceof Element) { SimpleXLink sl = new SimpleXLink(docBuilder, (Element)n); try { Element e = sl.retrieve(); parameterCache.put(name, e); return e; } catch (Exception e) { logger.error("can't get paramterRef for "+name, e); } // end of try-catch } } logger.warn("can't find paramter for "+name); //can't find that name??? return null; }

public Object getParameter(String name) { //ChannelProxy channelProxy = new ChannelProxy(); //ChannelId[] channelIds = getChannelIds(); //channelProxy.retrieve_grouping(channelIds, channelIds[0]); ///************************************************ if (parameterCache.containsKey(name)) { return parameterCache.get(name); } // end of if (parameterCache.containsKey(name)) NodeList nList = evalNodeList(config, "parameter[name/text()="+ dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { logger.debug("getting the parameter "+name); Node n = nList.item(0); if (n instanceof Element) { return XMLParameter.getParameter((Element)n); //System.out.println("THe tag name is "+((Element)n).getTagName()); // parameterCache.put(name, n); // return (Element)n; } } else { System.out.println("THE NODELIST IS NULL"); } // not a parameter, try parameterRef nList = evalNodeList(config, "parameterRef[text()="+dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { Node n = nList.item(0); if (n instanceof Element) { SimpleXLink sl = new SimpleXLink(docBuilder, (Element)n); try { Element e = sl.retrieve(); parameterCache.put(name, e); return e; } catch (Exception e) { logger.error("can't get paramterRef for "+name, e); } // end of try-catch } } logger.warn("can't find paramter for "+name); //can't find that name??? return null; }

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public Object getParameter(String name) { //ChannelProxy channelProxy = new ChannelProxy(); //ChannelId[] channelIds = getChannelIds(); //channelProxy.retrieve_grouping(channelIds, channelIds[0]); ///************************************************ if (parameterCache.containsKey(name)) { return parameterCache.get(name); } // end of if (parameterCache.containsKey(name)) NodeList nList = evalNodeList(config, "parameter[name/text()="+ dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { logger.debug("getting the parameter "+name); Node n = nList.item(0); if (n instanceof Element) { return XMLParameter.getParameter((Element)n); //System.out.println("THe tag name is "+((Element)n).getTagName()); // parameterCache.put(name, n); // return (Element)n; } } else { logger.debug("THE NODE LIST IS NULL for parameter "+name); } // not a parameter, try parameterRef nList = evalNodeList(config, "parameterRef[text()="+dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { Node n = nList.item(0); if (n instanceof Element) { SimpleXLink sl = new SimpleXLink(docBuilder, (Element)n); try { Element e = sl.retrieve(); parameterCache.put(name, e); return e; } catch (Exception e) { logger.error("can't get paramterRef for "+name, e); } // end of try-catch } } logger.warn("can't find paramter for "+name); //can't find that name??? return null; }

public Object getParameter(String name) { //ChannelProxy channelProxy = new ChannelProxy(); //ChannelId[] channelIds = getChannelIds(); //channelProxy.retrieve_grouping(channelIds, channelIds[0]); ///************************************************ if (parameterCache.containsKey(name)) { return parameterCache.get(name); } // end of if (parameterCache.containsKey(name)) NodeList nList = evalNodeList(config, "parameter[name/text()="+ dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { logger.debug("getting the parameter "+name); Node n = nList.item(0); if (n instanceof Element) { return XMLParameter.getParameter((Element)n); //System.out.println("THe tag name is "+((Element)n).getTagName()); // parameterCache.put(name, n); // return (Element)n; } } else { logger.debug("THE NODE LIST IS NULL for parameter "+name); } // not a parameter, try parameterRef nList = evalNodeList(config, "parameterRef[text()="+dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { Node n = nList.item(0); if (n instanceof Element) { SimpleXLink sl = new SimpleXLink(docBuilder, (Element)n); try { Element e = sl.retrieve(); parameterCache.put(name, e); return e; } catch (Exception e) { logger.error("can't get paramterRef", e); } // end of try-catch } } logger.warn("can't find paramter for "+name); //can't find that name??? return null; }

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public Object getParameter(String name) { //ChannelProxy channelProxy = new ChannelProxy(); //ChannelId[] channelIds = getChannelIds(); //channelProxy.retrieve_grouping(channelIds, channelIds[0]); ///************************************************ if (parameterCache.containsKey(name)) { return parameterCache.get(name); } // end of if (parameterCache.containsKey(name)) NodeList nList = evalNodeList(config, "parameter[name/text()="+ dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { logger.debug("getting the parameter "+name); Node n = nList.item(0); if (n instanceof Element) { return XMLParameter.getParameter((Element)n); //System.out.println("THe tag name is "+((Element)n).getTagName()); // parameterCache.put(name, n); // return (Element)n; } } else { logger.debug("THE NODE LIST IS NULL for parameter "+name); } // not a parameter, try parameterRef nList = evalNodeList(config, "parameterRef[text()="+dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { Node n = nList.item(0); if (n instanceof Element) { SimpleXLink sl = new SimpleXLink(docBuilder, (Element)n); try { Element e = sl.retrieve(); parameterCache.put(name, e); return e; } catch (Exception e) { logger.error("can't get paramterRef for "+name, e); } // end of try-catch } } logger.warn("can't find paramter for "+name); //can't find that name??? return null; }

public Object getParameter(String name) { //ChannelProxy channelProxy = new ChannelProxy(); //ChannelId[] channelIds = getChannelIds(); //channelProxy.retrieve_grouping(channelIds, channelIds[0]); ///************************************************ if (parameterCache.containsKey(name)) { return parameterCache.get(name); } // end of if (parameterCache.containsKey(name)) NodeList nList = evalNodeList(config, "parameter[name/text()="+ dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { logger.debug("getting the parameter "+name); Node n = nList.item(0); if (n instanceof Element) { return XMLParameter.getParameter((Element)n); //System.out.println("THe tag name is "+((Element)n).getTagName()); // parameterCache.put(name, n); // return (Element)n; } } else { logger.debug("THE NODE LIST IS NULL for parameter "+name); } // not a parameter, try parameterRef nList = evalNodeList(config, "parameterRef[text()="+dquote+name+dquote+"]"); if (nList != null && nList.getLength() != 0) { Node n = nList.item(0); if (n instanceof Element) { SimpleXLink sl = new SimpleXLink(docBuilder, (Element)n); try { Element e = sl.retrieve(); parameterCache.put(name, e); return e; } catch (Exception e) { logger.error("can't get paramterRef for "+name, e); } // end of try-catch } } //can't find that name??? return null; }

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public String[] getParameterNames() { if (parameterNameCache == null) { parameterNameCache = cacheParameterNames(); } // end of if (parameterNameCache == null) return parameterNameCache; }

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public String[] getSeismogramNames() { if (seismogramNameCache == null) { seismogramNameCache = cacheSeismogramNames(); } // end of if (seismogramNameCache == null) return seismogramNameCache; }

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public String doAction(HttpServletRequest request, BwSession sess, PEActionForm form) throws Throwable { /** Check access */ if (!form.getAuthorisedUser()) { return "noAccess"; } BwCategory key = form.getCategory(); int delResult = form.getCalSvcI().deleteCategory(key); if (delResult == 2) { form.getMsg().emit("org.bedework.pubevents.message.category.referenced"); return "inUse"; } if (delResult == 1) { form.getErr().emit("org.bedework.pubevents.error.nosuchcategory", key); return "notFound"; } form.getMsg().emit("org.bedework.pubevents.message.category.deleted"); return "continue"; }

public String doAction(HttpServletRequest request, BwSession sess, PEActionForm form) throws Throwable { /** Check access */ if (!form.getAuthorisedUser()) { return "noAccess"; } BwCategory key = form.getCategory(); int delResult = form.getCalSvcI().deleteCategory(key); if (delResult == 2) { form.getErr().emit("org.bedework.client.error.category.referenced"); return "inUse"; } if (delResult == 1) { form.getErr().emit("org.bedework.pubevents.error.nosuchcategory", key); return "notFound"; } form.getMsg().emit("org.bedework.pubevents.message.category.deleted"); return "continue"; }

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public String doAction(HttpServletRequest request, BwSession sess, PEActionForm form) throws Throwable { /** Check access */ if (!form.getAuthorisedUser()) { return "noAccess"; } BwCategory key = form.getCategory(); int delResult = form.getCalSvcI().deleteCategory(key); if (delResult == 2) { form.getMsg().emit("org.bedework.pubevents.message.category.referenced"); return "inUse"; } if (delResult == 1) { form.getErr().emit("org.bedework.pubevents.error.nosuchcategory", key); return "notFound"; } form.getMsg().emit("org.bedework.pubevents.message.category.deleted"); return "continue"; }

public String doAction(HttpServletRequest request, BwSession sess, PEActionForm form) throws Throwable { /** Check access */ if (!form.getAuthorisedUser()) { return "noAccess"; } BwCategory key = form.getCategory(); int delResult = form.getCalSvcI().deleteCategory(key); if (delResult == 2) { form.getMsg().emit("org.bedework.pubevents.message.category.referenced"); return "inUse"; } if (delResult == 1) { form.getErr().emit("org.bedework.client.error.nosuchcategory", key); return "notFound"; } form.getMsg().emit("org.bedework.pubevents.message.category.deleted"); return "continue"; }

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public String doAction(HttpServletRequest request, BwSession sess, PEActionForm form) throws Throwable { /** Check access */ if (!form.getAuthorisedUser()) { return "noAccess"; } BwCategory key = form.getCategory(); int delResult = form.getCalSvcI().deleteCategory(key); if (delResult == 2) { form.getMsg().emit("org.bedework.pubevents.message.category.referenced"); return "inUse"; } if (delResult == 1) { form.getErr().emit("org.bedework.pubevents.error.nosuchcategory", key); return "notFound"; } form.getMsg().emit("org.bedework.pubevents.message.category.deleted"); return "continue"; }

public String doAction(HttpServletRequest request, BwSession sess, PEActionForm form) throws Throwable { /** Check access */ if (!form.getAuthorisedUser()) { return "noAccess"; } BwCategory key = form.getCategory(); int delResult = form.getCalSvcI().deleteCategory(key); if (delResult == 2) { form.getMsg().emit("org.bedework.pubevents.message.category.referenced"); return "inUse"; } if (delResult == 1) { form.getErr().emit("org.bedework.pubevents.error.nosuchcategory", key); return "notFound"; } form.getMsg().emit("org.bedework.client.message.category.deleted"); return "continue"; }

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public DataSet extract(URL base, Element element) throws MalformedURLException{ String name = ""; String owner = ""; String id = element.getAttribute("datasetid"); Node temp; NodeList children = element.getChildNodes(); for (int i = 0; i < children.getLength(); i++) { if (children.item(i) instanceof Element) { Element child = (Element)children.item(i); if (child.getNodeName().equals("name")) { name = XMLUtil.getText(child); } else if (child.getNodeName().equals("owner")) { owner = XMLUtil.getText(child); } } } // all 3 should be populated now AuditInfo[] audit = new AuditInfo[1]; audit[0] = new AuditInfo("loaded from "+base.toString(), System.getProperty("user.name")); if (id == null || id.length() == 0) { id = "autogen_id-"+Math.random(); } MemoryDataSet dataset = new MemoryDataSet(id, name, owner, audit); for (int i = 0; i < children.getLength(); i++) { Node child = children.item(i); if (child.getNodeName().equals("dataset")) { dataset.addDataSet(extract(base, (Element)child), audit); } else if (child.getNodeName().equals("datasetRef")) { Element childElement = (Element)child; dataset.addDataSet(new URLDataSet(childElement.getAttribute("xlink:title)"), new URL(base, childElement.getAttribute("xlink:href"))), audit); } else if (child.getNodeName().equals("urlDataSetSeismogram")) { dataset.addDataSetSeismogram(URLDataSetSeismogram.getURLDataSetSeismogram(base, (Element)child), audit); } else if (child.getNodeName().equals("parameter")) { String paramName = XMLUtil.getText(XMLUtil.getElement((Element)child, "name")); Object o = XMLParameter.getParameter((Element)child); dataset.addParameter(paramName, o, audit); } } return dataset; }

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public static DataSet load(URL datasetURL) throws IOException, ParserConfigurationException, SAXException { DataSet dataset = null; DocumentBuilder docBuilder = XMLDataSet.getDocumentBuilder(); Document doc = docBuilder.parse(new BufferedInputStream(datasetURL.openStream())); Element docElement = doc.getDocumentElement(); if (docElement.getTagName().equals("dataset") && docElement.getAttribute("xsi:schemaLocation").equals(DSML_SCHEMA2_0)) { DataSetToXML dataSetToXML = new DataSetToXML(); dataset = dataSetToXML.extract(datasetURL, docElement); } else { logger.debug("Not a 2.0 dsml. "+docElement.getTagName()+" "+docElement.getAttribute("xsi:schemaLocation")); dataset = new XMLDataSet(docBuilder, datasetURL, docElement); } return dataset; }

public static DataSet load(URL datasetURL) throws IOException, ParserConfigurationException, SAXException { DataSet dataset = null; DocumentBuilder docBuilder = XMLDataSet.getDocumentBuilder(); Document doc = docBuilder.parse(new BufferedInputStream(datasetURL.openStream())); Element docElement = doc.getDocumentElement(); if (docElement.getTagName().equals("dataset") && docElement.getAttribute("xsi:schemaLocation").equals(DSML_SCHEMA2_0)) { DataSetToXML dataSetToXML = new DataSetToXML(); dataset = dataSetToXML.extract(datasetURL, docElement); } else { logger.warn("Not a 2.0 dsml. "+docElement.getTagName()+" "+docElement.getAttribute("xsi:schemaLocation")); dataset = new XMLDataSet(docBuilder, datasetURL, docElement); } return dataset; }

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public static LocalSeismogramImpl steim1(LocalSeismogramImpl seis) throws SteimException, IOException { int[] data = seis.get_as_longs(); LinkedList allBlocks = new LinkedList(); SteimFrameBlock block = Steim1.encode(data, 63); allBlocks.addLast(block); while (block.getNumSamples() < data.length) { // not all data encoded, make a new block int[] tmpData = new int[data.length-block.getNumSamples()]; System.arraycopy(data, block.getNumSamples(), tmpData, 0, tmpData.length); data = tmpData; block = Steim1.encode(data, 63); allBlocks.addLast(block); } EncodedData[] edata = new EncodedData[allBlocks.size()]; for (int i = 0; i < edata.length; i++) { block = (SteimFrameBlock)allBlocks.get(i); edata[i] = new EncodedData((short)B1000Types.STEIM1, block.getEncodedData(), block.getNumSamples(), false); } TimeSeriesDataSel dataSel = new TimeSeriesDataSel(); dataSel.encoded_values(edata); LocalSeismogramImpl out = new LocalSeismogramImpl(seis, dataSel); return out; }

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