rem stringlengths 1 53.3k | add stringlengths 0 80.5k | context stringlengths 6 326k | meta stringlengths 141 403 | input_ids list | attention_mask list | labels list |
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ByteArrayOutputStream os = new ByteArrayOutputStream(); InputStream in = new FileInputStream(args[1]); | os = new ByteArrayOutputStream(); in = new FileInputStream(args[1]); | public static void main(String[] args) { if (args.length != 3) { System.out.println("Usage: HexStrToBin enc/dec <infileName> <outfilename>"); System.exit(1); } try { ByteArrayOutputStream os = new ByteArrayOutputStream(); InputStream in = new FileInpu... | 4109 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4109/31d6aba7523c1171d3298c2d2f27b963fa299bfc/Hex.java/buggy/src/java/se/anatom/ejbca/util/Hex.java | [
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private void _addHighlight(int from, int to) throws BadLocationException { _matchHighlight = getHighlighter().addHighlight(from, to, _highlightPainter); } | private void _addHighlight(int from, int to) throws BadLocationException { _matchHighlight = getHighlighter().addHighlight(from, to, _highlightPainter); } | private void _addHighlight(int from, int to) throws BadLocationException { _matchHighlight = getHighlighter().addHighlight(from, to, _highlightPainter); } | 11192 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11192/e325016b29b8dde8e3ba0908ae34d55edb22c64f/DefinitionsPane.java/buggy/drjava/src/edu/rice/cs/drjava/ui/DefinitionsPane.java | [
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assertEquals("caaaaatcttctagtttttttttagaaaggatacaccaagtagacgattgtttactttac" + "acgccggaaatgaaaaccgcaatggtgctcaaggcaaaagacgttatccgccgtggctgt" + "ctggaatacgacgtcagcgccaccgacatcaccagctcgtttatggctatccgcaagacc" + "atgaccagcagcggacgcagcgccacctatgaggccagccgcagcgaggaagccagccac" + "gccgacctcgcctgggcgaccatgcacgccctgttaaatgagccac... | String expectedResidues0 = expectedExonSequence1 + expectedExonSequence2 + expectedExonSequence3; assertEquals(expectedResidues0, resTranscript0.getSequence().getResidues()); | public void checkTranscriptSequences() throws Exception { osw.flushObjectById(); ObjectStore os = osw.getObjectStore(); Transcript resTranscript0 = (Transcript) os.getObjectById(storedTranscripts[0].getId()); assertEquals("caaaaatcttctagtttttttttagaaaggatacaccaagtagacgattgttta... | 29158 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/29158/cc67e167d61396f7d90ae94b352e7d3c6ca07a00/TransferSequencesTest.java/clean/flymine/model/genomic/src/test/org/flymine/postprocess/TransferSequencesTest.java | [
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final String errorString = (String)iter.next(); | final String errorString = (String)iter.next(); | private void checkErrorMessage(String basePDLName, Collection errorKeywords, Collection failures) throws Exception { s_log.info("Checking bad pdl: " + basePDLName); try { MetadataRoot r = MetadataRoot.getMetadataRoot(); PDL pdl = getPDL(basePDLName); ... | 12196 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12196/558097820abc0198518796cedde797658cda9a5e/PDLTest.java/buggy/archive/core-platform/test/src/com/arsdigita/persistence/pdl/PDLTest.java | [
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public RectangleAnimation(Composite whereToDraw, Rectangle start, Rectangle end, int duration) { super(WorkbenchMessages.getString("RectangleAnimation.Animating_Rectangle")); this.duration = duration; this.start = start; this.end = end; setSystem(true); String platform = SWT.getPlatform(); if (!"win32".equals(platf... | public RectangleAnimation(Shell parentShell, Rectangle start, Rectangle end) { this(parentShell, start, end, 400); | public RectangleAnimation(Composite whereToDraw, Rectangle start, Rectangle end, int duration) { super(WorkbenchMessages.getString("RectangleAnimation.Animating_Rectangle")); //$NON-NLS-1$ this.duration = duration; this.start = start; this.end = end; setSystem(true); // Determine if we're on a platform where an... | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/2b1161e241896a70e75a2b2503368dfadba68dbd/RectangleAnimation.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/RectangleAnimation.java | [
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return null; | return AbstractIndexer.bestFunctionPrefix( _limitTo, simpleName, _matchMode, _caseSensitive ); | public char[] indexEntryPrefix() { // TODO Auto-generated method stub return null; } | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/7a408c3e1d654808f080fcb472cdcf92f1938829/FunctionDeclarationPattern.java/buggy/core/org.eclipse.cdt.core/search/org/eclipse/cdt/internal/core/search/matching/FunctionDeclarationPattern.java | [
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{ return createInsetsAdapter(); } | { return createInsetsAdapter(); } | public Object caseInsets(Insets object) { return createInsetsAdapter(); } | 46013 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46013/e5c78f0e8317166d02fa384e14c3dd7aa1796f2c/AttributeAdapterFactory.java/buggy/chart/org.eclipse.birt.chart.engine/src/org/eclipse/birt/chart/model/attribute/util/AttributeAdapterFactory.java | [
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dX1 -= ( bTicksLeft ? TICK_SIZE : 0 ) + dYAxisLabelsThickness; | dX1 -= ( bTicksLeft ? TICK_SIZE : 0 ) + Math.max( dYAxisLabelsThickness, dDecorationThickness[0] ); | protected final double adjustHorizontal( double dBlockX, double dBlockWidth, AllAxes aax ) throws ChartException, IllegalArgumentException { final OneAxis axPH = aax.areAxesSwapped( ) ? aax.getPrimaryOrthogonal( ) : aax.getPrimaryBase( ); final OneAxis axPV = aax.areAxesSwapped( ) ? aax.getPrimaryBase( ) :... | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/20bb7679d106e8105100c095c900612d5a37a46d/PlotWithAxes.java/buggy/chart/org.eclipse.birt.chart.engine/src/org/eclipse/birt/chart/computation/withaxes/PlotWithAxes.java | [
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Game.UNIT_IN_RETREAT); | Entity.REMOVE_IN_RETREAT); | private void resolveDfaAttack(DfaAttackAction daa, int lastEntityId) { final Entity ae = game.getEntity(daa.getEntityId()); final Targetable target = game.getTarget(daa.getTargetType(), daa.getTargetId()); Entity te = null; if (target != null && target.getTargetType() == Targetable.TYPE_... | 4135 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4135/7b156cd8b6cf94abce0d471a11632786a780a2ac/Server.java/clean/megamek/src/megamek/server/Server.java | [
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LaterInvocator.leaveModal(ProgressIndicatorBase.this); | doExitModality(); | public void run() { LaterInvocator.leaveModal(ProgressIndicatorBase.this); } | 17306 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17306/c177b16e8fadce8e8c13a717beccc94a7858519e/ProgressIndicatorBase.java/buggy/ui/impl/com/intellij/openapi/progress/util/ProgressIndicatorBase.java | [
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if ( async ) { | if (async) { | public static void main(String[] args) throws Exception { System.out.println("Usage java org.apache.james.testing.Main <testconfigfile>"); File testconfFile = new File(args[0]); DefaultConfigurationBuilder builder = new DefaultConfigurationBuilder(); Configuration alltestconf = builder.b... | 47102 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47102/bbbef603ffaae5369ab44517117636ee561d3b72/Main.java/buggy/tests/src/java/org/apache/james/testing/Main.java | [
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public void printCharacterEntityReference(char[] code) throws IOException { | public void printCharacterEntityReference (char[] code, boolean first, boolean preceedingSpace) throws IOException { if ((prettyPrinter.getFormat()) && (xmlSpace.get(0) != Boolean.TRUE)) { if (first) { printNewline(); printString(margin.toString()); } else if (preceedingSpace) { int endCol = column + code.length + 3; ... | public void printCharacterEntityReference(char[] code) throws IOException { printString("&#"); printCharacters(code); printCharacter(';'); } | 45946 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45946/bebad01b866f19c096ef5f10f2a9ca11827bbe45/OutputManager.java/buggy/sources/org/apache/batik/transcoder/svg2svg/OutputManager.java | [
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public NamingException (String msg) | public NamingException () | public NamingException (String msg) { super(msg); } | 25337 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/25337/daca25b853b52ea5035f6979a325fe030df38870/NamingException.java/buggy/libjava/javax/naming/NamingException.java | [
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Logger.normal(this, "My exponent: "+myExponent.toHexString()+", my exponential: "+myExponential.toHexString()+", peer's exponential: "+peerExponential.toHexString()); | public synchronized BlockCipher getCipher() { lastUsedTime = System.currentTimeMillis(); if(cipher != null) return cipher; // Calculate key NativeBigInteger sharedSecret = (NativeBigInteger) peerExponential.modPow(myExponent, group.getP()); MessageDigest md; try ... | 46731 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46731/4701aa9e21c30017ca88796ba43ef53f3e7172a5/DiffieHellmanContext.java/buggy/src/freenet/crypt/DiffieHellmanContext.java | [
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public Object getPreviousValue(); | Object getPreviousValue(); | public Object getPreviousValue(); | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/61b8e27fab61a8487622d1793b61aa19c130c7ab/SpinnerModel.java/clean/core/src/classpath/javax/javax/swing/SpinnerModel.java | [
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return new TableBandState( element, TableItem.HEADER_SLOT ); | return new TableBandState( element, IListingElementModel.HEADER_SLOT ); | public AbstractParseState startElement( String tagName ) { if ( tagName.equalsIgnoreCase( DesignSchemaConstants.COLUMN_TAG ) ) return new TableColumnState( handler, element, TableItem.COLUMN_SLOT ); if ( tagName.equalsIgnoreCase( DesignSchemaConstants.HEADER_TAG ) ) return new TableBandState( element, TableI... | 46013 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46013/d802c33711e0d111551ae23575895cd060f085b6/TableItemState.java/buggy/model/org.eclipse.birt.report.model/src/org/eclipse/birt/report/model/parser/TableItemState.java | [
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ds.wait(); } catch (InterruptedException ie) { | jobQueueSynchro.wait(); } catch (InterruptedException ie) { | public void run() { while (true) { // Load input data to input queue synchronized (ds) { if (jobQueue.isEmpty()) { jobQueue = genePattern.getWaitingJobs(); } if (jobQueue.isEmpty()) { try { ... | 57344 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57344/95a2eab1fe8529b27fcb7c023d56a4f951f94f07/AnalysisTask.java/buggy/src/org/genepattern/server/AnalysisTask.java | [
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} else if (buildAllAction != null && found) { | } else if (buildAllAction != null && found && !enabled) { | public void run() { Shell shell = window.getShell(); if (isDisposed || shell == null || shell.isDisposed()) return; IWorkspace workspace = ResourcesPlugin.getWorkspace(); IProject[] projects = workspace.getRoot().getProjects(); boolean enabled = B... | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/506669469fa5924c6033fa21a80040a0678d268c/WorkbenchActionBuilder.java/buggy/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/internal/ide/WorkbenchActionBuilder.java | [
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add(openComposite); | add(endedComposite); | public void closeOperation(boolean operationOK, boolean addToHistory, int mode) { if (DEBUG_OPERATION_HISTORY_UNEXPECTED) { if (openComposite == null) { System.out .print("OPERATIONHISTORY >>> Attempted to close operation when none was open "); //$NON-NLS-1$ System.out.println(); return; } } if... | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/6ed55bf13812d560205c1b00eb562c4b4f631565/DefaultOperationHistory.java/buggy/bundles/org.eclipse.core.commands/src/org/eclipse/core/commands/operations/DefaultOperationHistory.java | [
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messageValues[0] = jobInfo.getJob().getName(); messageValues[1] = taskName; messageValues[2] = String.valueOf(getPercentDone()); | messageValues[0] = String.valueOf(getPercentDone()); messageValues[1] = jobInfo.getJob().getName(); messageValues[2] = taskName; | String getDisplayString() { if(totalWork == IProgressMonitor.UNKNOWN) return unknownProgress(); if (taskName == null) { return getDisplayStringWithoutTask(); } else { String[] messageValues = new String[3]; messageValues[0] = jobInfo.getJob().getName(); messageValues[1] = taskName; messageValues[2] ... | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/6cd187439cd4cc7af0a6f1e5f6fa64b6a461996c/TaskInfo.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/progress/TaskInfo.java | [
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String logFileName = "megameklog.txt"; if (PreferenceManager.getClientPreferences().stampFilenames()) { logFileName = StringUtil.addDateTimeStamp(logFileName); } for (int i = 0; i < args.length; i++) { if (args[i].equals("-testdice")) { TestDice.testDice(); return; } else if (args[i].equals("-dedicated")) { String sav... | String logFileName = DEFAULT_LOG_FILE_NAME; | public static void main(String[] args) { int usePort = 2346; String logFileName = "megameklog.txt"; //$NON-NLS-1$ if (PreferenceManager.getClientPreferences().stampFilenames()) { logFileName = StringUtil.addDateTimeStamp(logFileName); } for (int i = 0; i < args.length; ... | 3464 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3464/15f3f809843b267f4de3e5b3ca28b1e9b8292edb/MegaMek.java/clean/megamek/src/megamek/MegaMek.java | [
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98}; | 98}; | protected OMElement createEnvelope() { OMFactory fac = OMAbstractFactory.getOMFactory(); OMNamespace omNs = fac.createOMNamespace("http://localhost/my", "my"); OMElement rpcWrapEle = fac.createOMElement("echoOMElement", omNs); OMElement data = fac.createOMElement("data", omNs); ex... | 49300 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49300/f7e4970b93b85f829dd6abff3c1a80a00ee1ce67/EchoRawMTOMLoadTest.java/clean/modules/integration/test/org/apache/axis2/mtom/EchoRawMTOMLoadTest.java | [
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SendMessageDirectJob j = new SendMessageDirectJob(_context, msg, _block.getRouter(), _priority); _context.jobQueue().addJob(j); | SendMessageDirectJob j = new SendMessageDirectJob(getContext(), msg, _block.getRouter(), _priority); getContext().jobQueue().addJob(j); | protected void send(I2NPMessage msg) { _log.info("Sending reply with " + _message.getClass().getName() + " in a sourceRouteeplyMessage to " + _block.getRouter().toBase64()); SendMessageDirectJob j = new SendMessageDirectJob(_context, msg, _block.getRouter(), _priority); _context.jobQueue().addJ... | 45677 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45677/e737e5c9507ed0d463dc9e45a8f63657f466b177/SendReplyMessageJob.java/clean/router/java/src/net/i2p/router/message/SendReplyMessageJob.java | [
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public void testDefaultFailoverMap() throws Exception { { JBossConnectionFactory factory = (JBossConnectionFactory )ic[0].lookup("/ConnectionFactory"); ClusteredClientConnectionFactoryDelegate delegate = (ClusteredClientConnectionFactoryDelegate)factory.getDelegate();... | 3806 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3806/549f137ad1e8828bb44cb18fa8a4e7ce3f825a1e/HATest.java/buggy/tests/src/org/jboss/test/messaging/jms/clustering/HATest.java | [
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float[] feature = score.getFeature().getFeatureData(); | float[] feature = ((FloatData) score.getData()).getValues(); | private void accumulateMean(int senone, TrainerScore score) { if (senone == TrainerAcousticModel.ALL_MODELS) { for (int i = 0; i < senonePool.size(); i++) { accumulateMean(i, score); } } else { GaussianMixture gaussian = (GaussianMixture) senonePool.get(senone); MixtureComponent[] mix = gaussian.... | 8321 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8321/292c05f9235a4c8e014073d071c7352aadfe47de/HMMPoolManager.java/clean/sphinx4/edu/cmu/sphinx/knowledge/acoustic/tiedstate/trainer/HMMPoolManager.java | [
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DataTracker dataTracker = new DataTracker(db, maxSize, commitSize); | DataTracker newDataTracker = new DataTracker(db, maxSize, commitSize); | public static IntegrationWriterDataTrackingImpl getInstance(Properties props) throws ObjectStoreException { String writerAlias = props.getProperty("osw"); if (writerAlias == null) { throw new ObjectStoreException(props.getProperty("alias") + " does not have an osw" ... | 7196 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7196/ca277c62d4614d8e9f5486e3abb7e4dffa688a63/IntegrationWriterDataTrackingImpl.java/clean/intermine/src/java/org/intermine/dataloader/IntegrationWriterDataTrackingImpl.java | [
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TypesHelper helper = new TypesHelper(xsdSchema); String aPrefix = helper.getPrefix(element.getAttribute(XSDConstants.TARGETNAMESPACE_ATTRIBUTE), false); if (aPrefix != null && aPrefix.length() > 0) { prefixText.setText(aPrefix); } else | if (element != null) | public void refresh() { if (doRefresh) { // hack...open bug against properties if (prefixText.isDisposed() || targetNamespaceText.isDisposed()) { return; } if (prefixText.isFocusControl() || targetNamespaceText.isFocusControl()) { return; }... | 13989 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13989/60a9bf55997bc01dab30b516a1a046ff1ee6469c/NamespaceSection.java/clean/bundles/org.eclipse.wst.xsd.ui/src/org/eclipse/wst/xsd/ui/internal/properties/section/NamespaceSection.java | [
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if (!ensureTargetIsValid(new File(getDestinationValue()))) return false; | if (!ensureTargetIsValid(new File(getDestinationValue()))) { return false; } | public boolean finish() { List resourcesToExport = getWhiteCheckedResources(); if (!ensureTargetIsValid(new File(getDestinationValue()))) return false; //Save dirty editors if possible but do not stop if not all are saved saveDirtyEditors(); // about to invoke the opera... | 55805 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55805/e38d295ea613cf9f08aadb93a84a33d2e91abc5f/WizardFileSystemResourceExportPage1.java/buggy/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/internal/wizards/datatransfer/WizardFileSystemResourceExportPage1.java | [
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{ String s = getString(columnIndex); DateFormat df = DateFormat.getDateInstance(); if (s != null) { try { java.sql.Date d = (java.sql.Date)df.parse(s); return new Timestamp(d.getTime()); } catch (ParseException e) { throw new SQLException("Bad Timestamp Format: " + s); } } return null; } | { String s = getString(columnIndex); DateFormat df = DateFormat.getDateInstance(); if (s != null) { try { java.sql.Date d = (java.sql.Date)df.parse(s); return new Timestamp(d.getTime()); } catch (ParseException e) { throw new SQLException("Bad Timestamp Format: " + s); } } return null; } | public Timestamp getTimestamp(int columnIndex) throws SQLException { String s = getString(columnIndex); DateFormat df = DateFormat.getDateInstance(); if (s != null) { try { java.sql.Date d = (java.sql.Date)df.parse(s); return new Timestamp(d.getTime()); } catch (ParseException e) { throw new SQLExce... | 45454 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45454/6a061da272f04e1463864065f87f1f3fd61d6162/ResultSet.java/buggy/src/interfaces/jdbc/postgresql/ResultSet.java | [
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Vector filterMethods = new Vector(); Class cdClass = getContentDefinitionClass(); try { filterMethods = (Vector)cdClass.getMethod("getFilterMethods", new Class[] { CmsObject.class }).invoke(null, new Object[] { cms }); } catch(InvocationTargetException ite) { if(A_OpenCms.isLogging()) { A_OpenCms.log(C_OPENCMS_INFO, ... | Vector filterMethods = new Vector(); Class cdClass = getContentDefinitionClass(); try { filterMethods = (Vector) cdClass.getMethod("getFilterMethods", new Class[] {CmsObject.class}).invoke(null, new Object[] {cms}); } catch (InvocationTargetException ite) { if (A_OpenCms.isLogging()) { A_OpenCms.log(C_OPENCMS_INFO, ge... | private Vector getFilterMethods(CmsObject cms) { Vector filterMethods = new Vector(); Class cdClass = getContentDefinitionClass(); try { filterMethods = (Vector)cdClass.getMethod("getFilterMethods", new Class[] { CmsObject.class }).invoke(null, new Object[] ... | 51784 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51784/14d8b5bd357d9dd5036f4099d10dbf7e8c9400a7/A_Backoffice.java/buggy/src/com/opencms/defaults/A_Backoffice.java | [
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super(params); | if (! compatibility) { set("openid.ns", OPENID2_NS); setClaimed(claimedId); } set("openid.mode", MODE_IDRES); setIdentity(delegate); setReturnTo(returnTo); setNonce(nonce); if (invalidateHandle != null) setInvalidateHandle(invalidateHandle); setHandle(assoc.getHandle()); setSigned(signList); setSignature(assoc.sign(... | public AuthSuccess(ParameterList params) throws MessageException { super(params); } | 51216 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51216/039a03d7f0655e85bd0927b5df9bf1d8ca038941/AuthSuccess.java/buggy/src/net/openid/message/AuthSuccess.java | [
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if (tool.isHeaderFile(ext)) { return true; | try { switch (tool.getNatureFilter()) { case ITool.FILTER_C: if (project.hasNature(CProjectNature.C_NATURE_ID) && !project.hasNature(CCProjectNature.CC_NATURE_ID)) { return tool.isHeaderFile(ext); } break; case ITool.FILTER_CC: if (project.hasNature(CCProjectNature.CC_NATURE_ID)) { return tool.isHeaderFile(ext); } bre... | public boolean isHeaderFile(String ext) { // Check to see if there is a rule to build a file with this extension IConfiguration config = getDefaultConfiguration(getDefaultTarget()); ITool[] tools = config.getTools(); for (int index = 0; index < tools.length; index++) { ITool tool = tools[index]; if (tool.isHea... | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/cc6084024dd2af4d5b3c4287f5e9fbae20d84a2a/ManagedBuildInfo.java/buggy/build/org.eclipse.cdt.managedbuilder.core/src/org/eclipse/cdt/managedbuilder/internal/core/ManagedBuildInfo.java | [
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final String methodName = returnCheckSpecification.getMethodName(); final String className = returnCheckSpecification.getClassName(); | final String methodName = returnCheckSpecification.getMethodName(); final String className = returnCheckSpecification.getClassName(); | private void formatCallCheckString(){ final StringBuffer buffer = new StringBuffer(); synchronized(lock){ boolean first=true; for(ReturnCheckSpecification returnCheckSpecification : callsToCheck){ if(first){ first = false; } else{ ... | 56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/0c22d3bce35a1ee7d70c329328f649614cf6f21a/IgnoreResultOfCallInspection.java/buggy/plugins/InspectionGadgets/src/com/siyeh/ig/bugs/IgnoreResultOfCallInspection.java | [
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IDEWorkbenchPlugin .log(MessageFormat .format( "Exception in {0}.getNewFolder(): {1}", new Object[] { getClass().getName(), e.getTargetException() })); | IDEWorkbenchPlugin.log(getClass(), "createNewFolder()", e.getTargetException()); | public IFolder createNewFolder() { if (newFolder != null) return newFolder; // create the new folder and cache it if successful final IPath containerPath = resourceGroup.getContainerFullPath(); IPath newFolderPath = containerPath.append(resourceGroup.getResource()); fin... | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/f7c29fb6bdb652f1a858b5e3535c58d788ab85d9/WizardNewFolderMainPage.java/clean/bundles/org.eclipse.ui.ide/extensions/org/eclipse/ui/dialogs/WizardNewFolderMainPage.java | [
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eventTypes.add(new Integer(ERROR)); | eventTypes.add(ERROR); | public void error (SAXParseException e) throws SAXException { if(buffering) { eventTypes.add(new Integer(ERROR)); eventArguments.add(e); } else if (errorHandler != null) { errorHandler.error(e); } } | 1895 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1895/5bd8136256b7a06c2a8f66363fbe38b5e9e9f206/SAX2BufferImpl.java/buggy/source/org/jasig/portal/utils/SAX2BufferImpl.java | [
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public void inputChanged(Viewer viewer, Object oldInput, Object newInput) { if(oldInput != null && !oldInput.equals(newInput)) | public void inputChanged(Viewer aViewer, Object oldInput, Object newInput) { if (oldInput != null && !oldInput.equals(newInput)) | public void inputChanged(Viewer viewer, Object oldInput, Object newInput) { if(oldInput != null && !oldInput.equals(newInput)) rootElements.clear(); } | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/187a6e5e9526ea47a03a969d7ddb741178d2527d/TestContentProvider.java/buggy/tests/org.eclipse.ui.tests.navigator/src/org/eclipse/ui/tests/navigator/extension/TestContentProvider.java | [
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return getRuby().getNil(); } | return getRuby().getNil(); } | public RubyObject m_attr_writer(RubyObject[] args) { for (int i = 0; i < args.length; i++) { addAttribute(((RubySymbol) args[i]).toId(), false, true, true); } return getRuby().getNil(); } | 1060 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1060/0a7181933af700ea8025a4197f3a5ebcc08333c3/RubyModule.java/buggy/org/jruby/RubyModule.java | [
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public org.quickfix.field.SymbolSfx getSymbolSfx() throws FieldNotFound { org.quickfix.field.SymbolSfx value = new org.quickfix.field.SymbolSfx(); | public quickfix.field.SymbolSfx getSymbolSfx() throws FieldNotFound { quickfix.field.SymbolSfx value = new quickfix.field.SymbolSfx(); | public org.quickfix.field.SymbolSfx getSymbolSfx() throws FieldNotFound { org.quickfix.field.SymbolSfx value = new org.quickfix.field.SymbolSfx(); getField(value); return value; } | 5926 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5926/fecc27f98261270772ff182a1d4dfd94b5daa73d/MassQuoteAcknowledgement.java/buggy/src/java/src/quickfix/fix44/MassQuoteAcknowledgement.java | [
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String flag = req.readAtom(); | String flag = req.readATOM(); | private boolean executeRequest(ImapRequest req, ImapSession session) throws IOException, ImapException { if (session != null && session.isIdle()) return doIDLE(null, IDLE_STOP, req.readAtom().equals("DONE") && req.eof()); String tag = req.readTag(); boolean byUID = false; req.... | 6965 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6965/c0e5cc9943be1b3fd0220b5c4ee7f7259d1454e0/ImapHandler.java/clean/ZimbraServer/src/java/com/zimbra/cs/imap/ImapHandler.java | [
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throw ExceptionFactory.makeMessageException(Messages.getMessage("MethodNotImplemented", "MessageImpl.getAsSOAPMessage()")); | try { OMElement element = xmlPart.getAsOMElement(); ByteArrayOutputStream outStream = new ByteArrayOutputStream(); element.serialize(outStream); ByteArrayInputStream inStream = new ByteArrayInputStream(outStream .toByteArray()); MessageFactory mf = MessageFactory.newInstance(); MimeHeaders defaultHeader... | public SOAPMessage getAsSOAPMessage() throws MessageException { // TODO Missing implementation throw ExceptionFactory.makeMessageException(Messages.getMessage("MethodNotImplemented", "MessageImpl.getAsSOAPMessage()")); } | 49300 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49300/036a12e3edc92b5f14a8982bfa9b60a3318021e5/MessageImpl.java/buggy/modules/jaxws/src/org/apache/axis2/jaxws/message/impl/MessageImpl.java | [
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_uri = argument(0); if (_uri instanceof LiteralExpr) { LiteralExpr expr = (LiteralExpr)_uri; if (expr.getValue().equals(EMPTYSTRING)) { Stylesheet stylesheet = getStylesheet(); if (stylesheet == null) { ErrorMsg msg = new ErrorMsg(ErrorMsg.ILLEGAL_ARG_ERR, this); throw new TypeCheckError(msg); } _uri = new LiteralExpr... | _arg1 = argument(0); | public Type typeCheck(SymbolTable stable) throws TypeCheckError { // At least one argument - two at most final int ac = argumentCount(); if ((ac < 1) || (ac > 2)) { ErrorMsg msg = new ErrorMsg(ErrorMsg.ILLEGAL_ARG_ERR, this); throw new TypeCheckError(msg); } // Parse the first argument - the document URI _u... | 46591 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46591/90690d28d7a287fb496550daf58cc79f422d8099/DocumentCall.java/clean/src/org/apache/xalan/xsltc/compiler/DocumentCall.java | [
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jj_la1[28] = jj_gen; | jj_la1[27] = jj_gen; | final public void VariableDeclaratorId() throws ParseException { /*@bgen(jjtree) VariableDeclaratorId */ ASTVariableDeclaratorId jjtn000 = new ASTVariableDeclaratorId(this, JJTVARIABLEDECLARATORID); boolean jjtc000 = true; jjtree.openNodeScope(jjtn000);String s = null; Token t = null; try { t = jj_consume... | 45569 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45569/e4e1467181b67cfd9bbbd764d319d740024b0993/JavaParser.java/buggy/pmd/src/net/sourceforge/pmd/ast/JavaParser.java | [
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try { position++; bCodeStream[classFileOffset++] = OPC_invokespecial; } catch (IndexOutOfBoundsException e) { resizeByteArray(OPC_invokespecial); | if (classFileOffset + 2 >= bCodeStream.length) { resizeByteArray(); | public void invokeNoClassDefFoundErrorStringConstructor() { // invokespecial: java.lang.NoClassDefFoundError.<init>(Ljava.lang.String;)V if (DEBUG) System.out.println(position + "\t\tinvokespecial: java.lang.NoClassDefFoundError.<init>(Ljava.lang.String;)V"); //$NON-NLS-1$ countLabels = 0; try { position++; bCodeStre... | 10698 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10698/3a562aaf09f9f323b583086b80b4683378886606/CodeStream.java/buggy/org.eclipse.jdt.core/compiler/org/eclipse/jdt/internal/compiler/codegen/CodeStream.java | [
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if (rubyClass.getSuperClass().getRealClass() != superClass) { return false; | if (superClass != null) { if (rubyClass.getSuperClass().getRealClass() != superClass) { return false; } | private boolean matchingClassExists(String className, RubyClass superClass) { if (! isConstantDefined(className)) { return false; } IRubyObject type = getConstant(className); if (! (type instanceof RubyClass)) { throw new TypeError(runtime, className + " is not a cl... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe00c45012a36b20ff7faeacd9acb6883e4b0af1/EvaluateVisitor.java/clean/src/org/jruby/evaluator/EvaluateVisitor.java | [
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private DnDAction getDnDActionForPlatformAction(int platformAction) { | private static DnDAction getDnDActionForPlatformAction(int platformAction) { | private DnDAction getDnDActionForPlatformAction(int platformAction) { DnDAction action = null; switch (platformAction) { case DnDConstants.ACTION_COPY : action = DnDAction.ADD; break; case DnDConstants.ACTION_MOVE : action = DnDAction.MOVE; break; case DnDConstants.ACT... | 12814 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12814/aeb687a5339fb81ab4009be6dbac22d02f4bd915/DnDManagerImpl.java/clean/source/com/intellij/ide/dnd/DnDManagerImpl.java | [
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insertTextDocumentImages( textDocument, user ); | insertTextDocumentImages( textDocument ); | void updateTextDocumentImages( TextDocumentDomainObject textDocument, UserDomainObject user ) { deleteTextDocumentImages( textDocument ); insertTextDocumentImages( textDocument, user ); } | 8781 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8781/3b0fe7c2d4b2d004a5a425682d8a6461277e633a/DocumentStoringVisitor.java/buggy/server/src/imcode/server/document/DocumentStoringVisitor.java | [
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ByteArrayOutputStream bos = new ByteArrayOutputStream (); | ByteArrayOutputStream bos = new ByteArrayOutputStream(); | public boolean next () throws IOException { if (eof) return false; // read header header = new Hashtable (); String line; while (true) { line = readLine (); if (line == null || line.equals ("")) break; int cut = line.indexOf (':'); if (cut == -1) throw new IOException ("colon ... | 4841 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4841/cce2b605c6b4e455bee4bf39b7ca197f897bfbfa/Decoder.java/clean/src/org/kobjects/mime/Decoder.java | [
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de = ( CompositeSequence ) compositeSequenceDao.create( de ); ad.getCompositeSequences().add( de ); | reporter = ( Reporter ) reporterDao.create( reporter ); ad.getReporters().add( reporter ); CompositeSequence compositeSequence = CompositeSequence.Factory.newInstance(); if ( randomNames ) { compositeSequence.setName( RandomStringUtils.randomNumeric( RANDOM_STRING_LENGTH ) + "_test" ); } else { compositeSequence.setNa... | protected ArrayDesign getTestPersistentArrayDesign( int numCompositeSequences, boolean randomNames ) { ArrayDesign ad = ArrayDesign.Factory.newInstance(); ad.setName( RandomStringUtils.randomAlphabetic( RANDOM_STRING_LENGTH ) ); for ( int i = 0; i < numCompositeSequences; i++ ) { Com... | 4335 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4335/1222b5051b43c0b81d63144bfc6770b731b19db7/BaseTransactionalSpringContextTest.java/clean/gemma-testing/src/main/java/ubic/gemma/testing/BaseTransactionalSpringContextTest.java | [
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public PatternDescr lhs_or() throws RecognitionException { PatternDescr d; PatternDescr left = null; PatternDescr right = null; d = null; try { // /home/michael/projects/jboss-rules/drools-compiler/src/main/resources/org/drools/lang/drl.g:891:17: (left= lh... | 5490 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5490/cb210a30853642e270a3bba6ce570409f6046852/RuleParser.java/buggy/drools-compiler/src/main/java/org/drools/lang/RuleParser.java | [
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if (fSkipValidationDepth >= 0) return; int count = fMatcherStack.getMatcherCount(); for (int i = 0; i < count; i++) { XPathMatcher matcher = fMatcherStack.getMatcherAt(i); matcher.characters(text); } | public void ignorableWhitespace(XMLString text) throws XNIException { // call handlers if (fDocumentHandler != null) { fDocumentHandler.ignorableWhitespace(text); } if (fSkipValidationDepth >= 0) return; // call all active identity constraints int coun... | 6373 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6373/eeb7517c4cc4197def51b4bc9aa28ba7210e59dd/XMLSchemaValidator.java/buggy/src/org/apache/xerces/impl/xs/XMLSchemaValidator.java | [
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msg.set(NODE_TO_NODE_MESSAGE_DATA, data); | msg.set(NODE_TO_NODE_MESSAGE_DATA, new ShortBuffer(data)); | public static final Message createNodeToNodeMessage(int type, String data) { Message msg = new Message(nodeToNodeTextMessage); msg.set(NODE_TO_NODE_MESSAGE_TYPE, type); msg.set(NODE_TO_NODE_MESSAGE_DATA, data); return msg; } | 50619 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50619/ad0bf740a058caf02fdf4de184f13067e0275d43/DMT.java/clean/src/freenet/io/comm/DMT.java | [
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if ((sx1 > width1) || (sx2 < 0) || | if ((sx1 > width1) || (sx2 < 0) || | protected void flat_image(PImage image, int sx1, int sy1) { int ix1 = 0; int iy1 = 0; int ix2 = image.width; int iy2 = image.height; if (image_mode == CENTER) { sx1 -= image.width / 2; sy1 -= image.height / 2; } int sx2 = sx1 + image.width; int sy2 = sy1 + image.height; // don't d... | 8833 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8833/d877999f6e97d3c619ae60b800d586ac00acf618/PGraphics.java/clean/core/PGraphics.java | [
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eDynamicUnset( eFeature ); | super.eUnset( featureID ); | public void eUnset( EStructuralFeature eFeature ) { switch ( eDerivedStructuralFeatureID( eFeature ) ) { case AttributePackage.EMBEDDED_IMAGE__TYPE : unsetType( ); return; case AttributePackage.EMBEDDED_IMAGE__URL : setURL( URL_EDEFAULT ); return; case AttributePackage.EMBEDDED_IMAGE__DATA : set... | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/036e8c78765730b146e5854b9d6c397a296fed86/EmbeddedImageImpl.java/clean/chart/org.eclipse.birt.chart.engine/src/org/eclipse/birt/chart/model/attribute/impl/EmbeddedImageImpl.java | [
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buf.append(className); | buf.append(sourceFile); | public String format(String key) { if (key.equals("")) { StringBuffer buf = new StringBuffer(); buf.append(className); buf.append(":["); if (startLine == endLine) { buf.append("line "); buf.append(startLine); } else { buf.append("lines "); buf.append(startLine); buf.append('-'); buf.append... | 7352 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7352/26d4f6af88d660e3e41bd1837217176c038dba87/SourceLineAnnotation.java/buggy/findbugs/src/java/edu/umd/cs/findbugs/SourceLineAnnotation.java | [
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methodClass.defineMethod("arity", arity); methodClass.defineMethod("[]", call); methodClass.defineMethod("call", call); | methodClass.defineMethod("arity", arity); methodClass.defineMethod("[]", call); methodClass.defineMethod("call", call); | public static RubyClass createMethodClass(Ruby ruby) { RubyCallbackMethod arity = new ReflectionCallbackMethod(RubyMethod.class, "arity"); RubyCallbackMethod call = new ReflectionCallbackMethod(RubyMethod.class, "call", true); RubyClass methodClass = ruby.defineClass("Method", ruby.getClasses().getObjectClass... | 1060 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1060/0a7181933af700ea8025a4197f3a5ebcc08333c3/RubyMethod.java/buggy/org/jruby/RubyMethod.java | [
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JavassistUtils.resolve( new Class[]{Method.class, Object.class, Object[].class} ), ctClass ); | JavassistUtils.resolve( new Class[]{ Method.class, Object.class, Object[].class } ), ctClass ); | private static Class createInvocationClass( ClassLoader classLoader, Method interfaceMethod ) throws CannotCompileException { Class invocationClass; final CtClass ctClass = JavassistUtils.createClass( getSimpleName( interfaceMethod.getDeclaringClass() ) + "_" + interfaceMe... | 51801 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51801/75e082134851dcb68c682f420405550d7f057522/JavassistInvocation.java/clean/src/java/org/apache/commons/proxy/factory/javassist/JavassistInvocation.java | [
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public void drawLine (int x1, int y1, int x2, int y2) | public void drawLine(int x1, int y1, int x2, int y2) | public void drawLine (int x1, int y1, int x2, int y2) { int xp[] = new int[2]; int yp[] = new int[2]; xp[0] = x1; xp[1] = x2; yp[0] = y1; yp[1] = y2; doPolygon (xp, yp, 2, false, false); } | 47947 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47947/b23a69766b998a4a095a0e59631aa072d973a7fe/GdkGraphics2D.java/clean/gnu/java/awt/peer/gtk/GdkGraphics2D.java | [
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getBody().run(context, output); | invokeBody(output); | public void doTag(XMLOutput output) throws Exception { // force project to be lazily constructed getProject().setDefaultGoalName( this.defaultGoalName ); org.apache.tools.ant.Project antProject = AntTagLibrary.getProject( context ); // allow access to Ant methods via the p... | 51800 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51800/0d5aec147baa5b0b5399591c7e9dd775bb22bcb4/ProjectTag.java/clean/src/java/org/apache/commons/jelly/tags/werkz/ProjectTag.java | [
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private TextSpanLayout getOffsetAdjustedTextLayout( AttributedCharacterIterator aci, FontRenderContext frc) { TextSpanLayout layout = getTextLayoutFactory().createTextLayout(aci, new Point2D.Float(0f, 0f), new java.awt.font.FontRenderConte... | 45946 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45946/722077ac2ba94a100164f684d159431c68c5e607/BasicTextPainter.java/buggy/sources/org/apache/batik/gvt/renderer/BasicTextPainter.java | [
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Context context = checkContext(); | Context context = getContext(); | private void removeBindingInternal(String name, boolean serviceBinding) { try { if (name == null) { throw new NullPointerException("The name must not be null"); } Context context = checkContext(); try { context.removeBinding(getInternalName(name, serviceBinding)); } catch (NameNotBoundExceptio... | 48631 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48631/51014428559746a71eea60ff89c4bc5babf778c1/DataServiceImpl.java/clean/src/server/j2se/com/sun/sgs/impl/service/data/DataServiceImpl.java | [
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protected void initSettings() { IDialogSettings settings = getDialogSettings(); if (settings.get(SETTINGS_SAVED) == null) { // Set default values taskListCheckBox.setSelection(true); taskActivationHistoryCheckBox.setSelection(true); taskContextsCheckBox.setSelection(true); sourceDirText.setText(""); over... | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/30c86c135cbd0421b86b3df78f8f1e01efff1b79/TaskDataImportWizardPage.java/clean/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/internal/tasklist/ui/wizards/TaskDataImportWizardPage.java | [
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MIR_Load.setOffset(inst, IC(frameSize - offset - 256)); | if ( frameIsRequired()) MIR_Load.setOffset(inst, IC(frameSize - offset - 256)); else MIR_Load.setOffset(inst, IC(-offset - 256)); | void cleanUpAndInsertEpilogue() { OPT_PhysicalRegisterSet phys = ir.regpool.getPhysicalRegisterSet(); OPT_Instruction inst = ir.firstInstructionInCodeOrder().nextInstructionInCodeOrder(); for (; inst != null; inst = inst.nextInstructionInCodeOrder()) { switch (inst.getOpcode()) { case PPC_MOVE_op... | 5245 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5245/e91a0c0d12128840b0bc19690813b65cca3ae137/OPT_StackManager.java/clean/rvm/src/vm/arch/powerPC/compilers/optimizing/regalloc/OPT_StackManager.java | [
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if (piece.isBlack) | if (!piece.isBlack) | protected void unexecute () { if (Log.debug) { Log.debug(DEBUG, "unexecuting move: " + this); Log.debug2(DEBUG, board); } board.setEnPassantFile(prevEnPassantFile); //castling if (piece.isKing() && piece.moveCount == 1) { Square rook_orig, rook_dest; //long if (dest... | 2285 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2285/e2ef29e2c8c8581ae7e41e5d7b4c9e143cce251b/ChessMove.java/clean/ictk/src/ictk/boardgame/chess/ChessMove.java | [
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public void init(int i) { add(new Beamform(i, numChannels)); add(new BeamFirFilter(mfSize, numPostDec2, 1)); add(new Magnitude()); add(new Detector(i, numPostDec2, targetBeam, targetSamplePostDec, cfarThreshold)); } | public void init() { add(new Beamform(i+k, numChannels)); add(new BeamFirFilter(mfSize, numPostDec2, 1)); add(new Magnitude()); add(new Detector(i+k, numPostDec2, targetBeam, targetSamplePostDec, cfarThreshold)); } | public void init(int i) { add(new Beamform(i, numChannels)); // Need to replace this fir with //fft -> elWiseMult -> ifft add(new BeamFirFilter(mfSize, numPostDec2, 1)); add(new Magnitude()); // with a more sophisticated detector, we need // someplace to store the d... | 47772 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47772/bac6e051d071e3af9abc59969a0fa4eb9e188670/BeamFormer.java/buggy/streams/apps/benchmarks/beamformer/streamit/BeamFormer.java | [
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List hints = new ArrayList(); | List<String> hints = new ArrayList<String>(); | protected List getHints() { List hints = new ArrayList(); hints.add( "There are no hints defined." ); return hints; } | 47703 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47703/e5b3b00b0f724a9834bcadb34453e906f7c0d25b/LessonAdapter.java/buggy/ webgoat/main/project/JavaSource/org/owasp/webgoat/lessons/LessonAdapter.java | [
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if ( bMinSliceDefined && bMinSliceApplied ) | if ( bMinSliceApplied ) | public final Size compute( IDisplayServer xs, Chart cm, SeriesDefinition[] seda, RunTimeContext rtc ) throws ChartException { // THREE CASES: // 1. ALL SERIES IN ONE ARRAYLIST // 2. ONE SERIES PER ARRAYLIST // 3. ALL OTHERS Legend lg = cm.getLegend( ); if ( !lg.isSetOrientation( ) ) { throw new ChartExcepti... | 46013 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46013/ad38cf76f1d641ada210d2a5b0551677d4e55a71/LegendBuilder.java/buggy/chart/org.eclipse.birt.chart.engine/src/org/eclipse/birt/chart/computation/LegendBuilder.java | [
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if (result != null) { if (result instanceof Element || result instanceof Document) { Node node = (Node) result; DOMGenerator domGenerator = new DOMGenerator(node); ProcessorOutput domOutput = domGenerator.createOutput(OUTPUT_DATA); domOutput.read(context, new ForwardingContentHandler(contentHandler) { public void start... | if ( result == null ) continue; final String strVal; if ( result instanceof org.dom4j.Element || result instanceof org.dom4j.Document ) { final org.dom4j.Element elt = result instanceof org.dom4j.Element ? ( org.dom4j.Element )result : ( ( org.dom4j.Document )result ).getRootElement(); final String sid = Dom4jUtils.mak... | public void readImpl(org.orbeon.oxf.pipeline.api.PipelineContext context, ContentHandler contentHandler) { Config config = (Config) readCacheInputAsObject(context, getInputByName(INPUT_CONFIG), new CacheableInputReader() { public Object read(final org.orbeon.oxf.pipeline.api... | 57229 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57229/558be30a09b76fdcd48f89d08b1308f894e34fcb/XPathProcessor.java/clean/src/java/org/orbeon/oxf/processor/transformer/XPathProcessor.java | [
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else { moduleHandle.includeLibrary( DEUtil.getRelativedPath( moduleHandle.getFileName( ), libraryHandle.getFileName( ) ), defaultName ); ExceptionHandler.openMessageBox( MSG_DIALOG_TITLE, MessageFormat.format( MSG_DIALOG_MSG, new String[]{ libraryHandle.getFileName( ) } ), SWT.ICON_INFORMATION ); return true; } | moduleHandle.includeLibrary( DEUtil.getRelativedPath( moduleHandle.getFileName( ), libraryHandle.getFileName( ) ), defaultName ); ExceptionHandler.openMessageBox( MSG_DIALOG_TITLE, MessageFormat.format( MSG_DIALOG_MSG, new String[]{ libraryHandle.getFileName( ) } ), SWT.ICON_INFORMATION ); return true; | public static boolean includeLibrary( ModuleHandle moduleHandle, LibraryHandle libraryHandle ) throws DesignFileException, SemanticException { if ( moduleHandle!=libraryHandle && !moduleHandle.isInclude( libraryHandle ) ) { String defaultName = new File( libraryHandle.getFileName( ) ).getName( ) .split( Fi... | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/a11c61344fea2c7dd935e6c4bd0e49a1b90c426e/UIUtil.java/buggy/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/internal/ui/util/UIUtil.java | [
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locatorImpl.setSystemId(e.getSystemId()); | locatorImpl.setSystemId(e.getExpandedSystemId()); | public void parse(String systemId) throws SAXException, IOException { // parse document XMLInputSource source = new XMLInputSource(null, systemId, null); try { parse(source); } // wrap XNI exceptions as SAX exceptions catch (XMLParseException e) { Exce... | 1831 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1831/bda39ebfdde5204af457e868d6a2908461900e9f/AbstractSAXParser.java/buggy/src/org/apache/xerces/parsers/AbstractSAXParser.java | [
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allocate(nrargs); | nrargs = 0; | public void setDefault() { int i; int nrargs; database = null; nrargs = 0; allocate(nrargs); for (i=0;i<nrargs;i++) { argument [i]="arg"+i; //$NON-NLS-1$ argumentDirection [i]="IN"; //$NON-NLS-1$ argumentType[i]=Value.VALUE_TYPE_NUMBER; } resultName = "result"; //$NON-NLS-1$ resultType = Value.... | 9547 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9547/3813bb349b7f599dec545d693a38e0bf9749c3c1/DBProcMeta.java/clean/src/be/ibridge/kettle/trans/step/dbproc/DBProcMeta.java | [
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protected void assertContains(int expected, int[] array) { | protected void assertContains(char expected, char[] array) { | protected void assertContains(int expected, int[] array) { for (int i = 0; i < array.length; ++i) { if (array[i] == expected) { return; } } StringBuffer message = new StringBuffer(); message.append(expected + " not in {"); for (int i = 0; i < a... | 6462 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6462/1fc892515bece739b5ec210547694b980de442cf/GroovyTestCase.java/buggy/src/main/groovy/util/GroovyTestCase.java | [
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int maxWidth = doubleBufferMaximumSize.width; int maxHeight = doubleBufferMaximumSize.height; return comp.createVolatileImage(Math.min(maxWidth, proposedWidth), Math.min(maxHeight, proposedHeight)); | Component root = getRoot(comp); Image buffer = (Image) offscreenBuffers.get(root); if (buffer == null || buffer.getWidth(null) < proposedWidth || buffer.getHeight(null) < proposedHeight || !(buffer instanceof VolatileImage)) { int width = Math.max(proposedWidth, root.getWidth()); width = Math.min(doubleBufferMaximumSiz... | public Image getVolatileOffscreenBuffer(Component comp, int proposedWidth, int proposedHeight) { int maxWidth = doubleBufferMaximumSize.width; int maxHeight = doubleBufferMaximumSize.height; return comp.createVolatileImage(Math.min(maxWidth, proposedWidth), ... | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/53983e95556bf4b775130b06570aa2ea08d85628/RepaintManager.java/buggy/core/src/classpath/javax/javax/swing/RepaintManager.java | [
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if (hb.isProcessed() || !hb.getMustUnderstand()) { | if (headerBlock.isProcessed() || !headerBlock.getMustUnderstand()) { | private void checkMustUnderstand(MessageContext msgContext) throws AxisFault { if (!msgContext.isHeaderPresent()) { return; } SOAPEnvelope se = msgContext.getEnvelope(); if (se.getHeader() == null) { return; } Iterator hbs = se.getHeader().examineAllHe... | 49300 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49300/66aeed666bb41a48d1fabc0c431ffb9a522c191b/AxisEngine.java/clean/modules/core/src/org/apache/axis2/engine/AxisEngine.java | [
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&& (mname.equals(name) || mname.equals(nameV)); | && (mname.equals(name) || mname.equals(nameV)); | public boolean select(Object value) { gnu.bytecode.Method method = (gnu.bytecode.Method) value; String mname = method.getName(); return ((method.getModifiers() & modmask) == modifiers) && (mname.equals(name) || mname.equals(nameV)); } | 36870 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/36870/199ba666b00f766c5fc703bba6aaa080393b93ba/ClassMethods.java/buggy/gnu/kawa/reflect/ClassMethods.java | [
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confirm.show(); | confirm.setVisible(true); | public void notifyOfBot() { if (GUIPreferences.getInstance().getNagForBotReadme() && !WarningShown) { WarningShown = true; String title = Messages.getString("BotGUI.notifyOfBot.title"); //$NON-NLS-1$ String body = Messages.getString("BotGUI.notifyOfBot.message"); //$NON-NLS-1... | 3464 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3464/26d049695b50784ad795b53718db83368ca9a6fb/BotGUI.java/buggy/megamek/src/megamek/client/bot/ui/AWT/BotGUI.java | [
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ctx.archiveManager.extractToCache(thisKey, ah.getArchiveType(), result.asBucket(), actx, ah); | ah.extractToCache(result.asBucket(), actx); | public void onSuccess(FetchResult result, ClientGetState state) { try { ctx.archiveManager.extractToCache(thisKey, ah.getArchiveType(), result.asBucket(), actx, ah); } catch (ArchiveFailureException e) { SingleFileFetcher.this.onFailure(new FetchException(e)); } catch (ArchiveRestartException e) { Sing... | 56348 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56348/a8dac0519d374c8e66f483db5910bffb9c35fb5e/SingleFileFetcher.java/clean/src/freenet/client/async/SingleFileFetcher.java | [
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containerBuilder.buildContainer(containerRef, null, assembler, "application"); | containerBuilder.buildContainer(containerRef, null, assembler, context); | public void contextInitialized(ServletContextEvent event) { ServletContext context = event.getServletContext(); ContainerAssembler assembler = loadAssembler(context); ObjectReference containerRef = new ApplicationScopeObjectReference(context, APPLICATION_CONTAINER); ObjectReference build... | 9344 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9344/e9de5c19c1cfd046b6960536d66863571a831674/ServletContainerListener.java/clean/trunk/java/servlet/src/java/org/nanocontainer/servlet/ServletContainerListener.java | [
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result = frame.result; | ContinuationJump cjump = (ContinuationJump)throwable; if (cjump == null) { result = frame.result; } else { result = cjump.result; } | private static void exitFrame(Context cx, CallFrame frame, Object throwable) { if (frame.idata.itsNeedsActivation) { ScriptRuntime.exitActivationFunction(cx); } if (frame.debuggerFrame != null) { try { if (throwable instan... | 13991 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13991/c4916822f7b034e789467ec296eed5d756c58a06/Interpreter.java/clean/js/rhino/src/org/mozilla/javascript/Interpreter.java | [
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childrenList.add( new LibDirectoryNodeModel( ( (File) children[i] ).getAbsolutePath( ) ) ); | childrenList.add( new LibDirectoryNodeModel( ( (File) children[i] ).getAbsolutePath( ) ) ); | public Object[] getChildren( ) { if ( childrenList.size( ) > 0 ) { return childrenList.toArray( ); } File file = new File( directoryPath ); if ( !file.exists( ) ) { return new Object[]{Messages .getString( "LibraryExplorerProvider.FolderNotExist" ) //$NON-NLS-1$ }; } if ( file.isDirectory( ) ) { F... | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/f06fb5699fc635c9c62b83fb721c2da353cf68a6/LibDirectoryNodeModel.java/buggy/UI/org.eclipse.birt.report.designer.ui.lib.explorer/src/org/eclipse/birt/report/designer/internal/ui/lib/explorer/model/LibDirectoryNodeModel.java | [
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if (TaskListView.getDefault() != null) TaskListView.getDefault().notifyTaskDataChanged(); | if (TaskListView.getDefault() != null) TaskListView.getDefault().notifyTaskDataChanged(task); | public void run() { if (TaskListView.getDefault() != null) TaskListView.getDefault().notifyTaskDataChanged(); } | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/04e28e82233b51ec5dbc77caf8f19bd94749d98b/Task.java/buggy/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/tasks/Task.java | [
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if (contains(offset)) | if (offset >= context_directive_start && offset <= context_ends) | public _Context findContextContainingOffset(int offset) { if (!hasSubContexts()) { if (contains(offset)) return this; return null; } _Context[] l = getSubContexts(); for (int i = 0; i < l.length; ++i) { _... | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/5553a5da68de1095a4ba4535e1731ccb6c9b9d77/LocationMap.java/buggy/core/org.eclipse.cdt.core/parser/org/eclipse/cdt/internal/core/parser/scanner2/LocationMap.java | [
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LoggingTool logger = new LoggingTool(true); | LoggingTool logger = new LoggingTool(); LoggingTool.configureLog4j(); logger.dumpSystemProperties(); | public static void main(String[] args) { if (args.length < 2) { System.err.println("syntax: SubstructureFinder <SMARTS> <file> <file2> ..."); System.exit(0); } // to make sure the CDK LoggingTool is configured LoggingTool logger = new LoggingTool(true); Query... | 1306 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1306/4da80abce4622cd2a94df73cb82668b6648bbea8/SubstructureFinder.java/buggy/src/org/openscience/cdk/applications/SubstructureFinder.java | [
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return ReflectionSupport.getDeclaredFields(this); } | return ReflectionSupport.getDeclaredFields(this); } | public Field[] getDeclaredFields() throws SecurityException { return ReflectionSupport.getDeclaredFields(this); } | 4011 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4011/df3191f698ef40a339ada630131c294b42a11705/Class.java/buggy/rvm/src/vm/GNUClasspathSupport/java/lang/Class.java | [
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