rem stringlengths 1 53.3k | add stringlengths 0 80.5k | context stringlengths 6 326k | meta stringlengths 141 403 | input_ids list | attention_mask list | labels list |
|---|---|---|---|---|---|---|
String objectToString(Object object) | String objectToString(final Object object) | String objectToString(Object object) { if (object == Undefined.instance) { return "undefined"; } if (object == null) { return "null"; } if (object instanceof NativeCall) { return "[object Call]"; } Context cx = Context.enter(); try { return Context.toString(object); } finally { Context.exit(); } } | 7555 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7555/daf6b75edbd23fda1750716a43bd235c561fef2b/Dim.java/buggy/js/rhino/toolsrc/org/mozilla/javascript/tools/debugger/Dim.java | [
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return getMultiPageEditor().getSite().getShell(); } | return getMultiPageEditor().getSite().getShell(); } | public Shell getShell() { return getMultiPageEditor().getSite().getShell(); } | 55805 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55805/f1c8b0aa355c00a6c82a289c808984de6778bfca/MultiPageEditorSite.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/part/MultiPageEditorSite.java | [
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synchronized (legions) | Iterator it = legions.iterator(); while (it.hasNext()) | List getLegionIds() { List ids = new ArrayList(); synchronized (legions) { Iterator it = legions.iterator(); while (it.hasNext()) { Legion legion = (Legion)it.next(); ids.add(legion.getMarkerId()); } } return ids; } | 51862 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51862/8d1ec51f9e7290b8276a6f9e736af457e9465186/Player.java/clean/Colossus/net/sf/colossus/server/Player.java | [
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index += VM_HardwarePerformanceMonitors.SIZE_OF_INT; | index = index.add(BYTES_IN_INT); | private void writeAppRun(int FORMAT, int run, byte[] app, int padding) { VM_Magic.setIntAtOffset( buffer, index, FORMAT); // format index += VM_HardwarePerformanceMonitors.SIZE_OF_INT; VM_Magic.setIntAtOffset( buffer, index, run); // run index += VM_HardwarePerformanceMonitors.SIZE_OF_INT; index = VM_HardwarePerformanceMonitors.writeStringToBuffer(buffer, index, app); // app name if (VM_HardwarePerformanceMonitors.verbose>=3) { VM.sysWrite ("writeAppRun(",FORMAT,", ",run); VM.sysWrite (") n_records ",n_records); VM.sysWriteln(", missed ",missed_records); } if (padding != 0) { addPadding(4-padding); } } | 5245 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5245/3a1409586ed0fc007c4120f3a96d6f7a1ae3593c/VM_HardwarePerformanceMonitor.java/buggy/rvm/src/vm/HPM/VM_HardwarePerformanceMonitor.java | [
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if (reg.isDouble()) continue; if (reg.isFloatingPoint()) | if (reg.isInteger()) | public OPT_FI_EscapeSummary simpleEscapeAnalysis (OPT_IR ir) { if (DEBUG) VM.sysWrite("ENTER Simple Escape Analysis " + ir.method + "\n"); if (DEBUG) ir.printInstructions(); // create a method summary object for this method VM_Method m = ir.method; OPT_MethodSummary summ = OPT_SummaryDatabase.findOrCreateMethodSummary(m); summ.setInProgress(true); OPT_FI_EscapeSummary result = new OPT_FI_EscapeSummary(); // set up register lists, SSA flags OPT_DefUse.computeDU(ir); OPT_DefUse.recomputeSSA(ir); // pass through registers, and mark escape information for (OPT_Register reg = ir.regpool.getFirstSymbolicRegister(); reg != null; reg = reg.getNext()) { // skip the following types of registers: if (reg.isFloat()) continue; if (reg.isDouble()) continue; if (reg.isFloatingPoint()) continue; if (reg.isLong()) continue; if (reg.isCondition()) continue; if (reg.isValidation()) continue; if (reg.isPhysical()) continue; if (!reg.isSSA()) continue; AnalysisResult escapes = checkAllAppearances(reg, ir); if (escapes.threadLocal) { result.setThreadLocal(reg, true); } if (escapes.methodLocal) { result.setMethodLocal(reg, true); } } // update the method summary database to note whether // parameters may escape int numParam = 0; for (OPT_OperandEnumeration e = ir.getParameters(); e.hasMoreElements(); numParam++) { OPT_Register p = ((OPT_RegisterOperand)e.next()).register; if (result.isThreadLocal(p)) { summ.setParameterMayEscapeThread(numParam, false); } else { summ.setParameterMayEscapeThread(numParam, true); } } // update the method summary to note whether the return value // may escape boolean foundEscapingReturn = false; for (Enumeration e = enumerateReturnValues(ir); e.hasMoreElements();) { OPT_Operand op = (OPT_Operand)e.nextElement(); if (op == null) continue; if (op.isRegister()) { OPT_Register r = op.asRegister().register; if (!result.isThreadLocal(r)) { foundEscapingReturn = true; } } } if (!foundEscapingReturn) summ.setResultMayEscapeThread(false); // record that we're done with analysis summ.setInProgress(false); if (DEBUG) VM.sysWrite("LEAVE Simple Escape Analysis " + ir.method + "\n"); return result; } | 5245 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5245/b372860b0bca12a1b3850b17dde0b867223b735d/OPT_SimpleEscape.java/buggy/rvm/src/vm/compilers/optimizing/optimizations/global/simpleSSA/escape/OPT_SimpleEscape.java | [
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fileName = dialog.open( ).trim( ); if ( fileName == null || fileName.length( ) == 0 ) | fileName = dialog.open( ); if ( fileName == null || fileName.trim().length( ) == 0 ) | public void handleEvent( Event event ) { String fileName = null; FileDialog dialog = new FileDialog( getShell( ), SWT.OPEN ); dialog.setText( Messages.getString( "ThumbnailBuilder.FileDialog.Title" ) ); //$NON-NLS-1$ dialog.setFilterExtensions( IMAGE_FILTER ); fileName = dialog.open( ).trim( ); if ( fileName == null || fileName.length( ) == 0 ) { return; } if ( checkExtensions( fileName ) == false ) { ExceptionHandler.openErrorMessageBox( Messages.getString( "ThumbnailBuilder.FileDialog.FileNameError.Title" ), Messages.getString( "ThumbnailBuilder.FileDialog.FileNameError.Message" ) ); return; } removeImage( ); isGenerated = false; hasThumbnail = true; image = new Image( null, fileName ); previewThumbnail.setVisible( false ); previewCanvas.setVisible( true ); previewCanvas.loadImage( image ); // previewCanvas.showOriginal( ); btnRemove.setEnabled( true ); } | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/4f58f9dd90503f33f1ca87329e899468d7480d36/ThumbnailBuilder.java/buggy/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/ui/dialogs/ThumbnailBuilder.java | [
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p.getDriver().sendPatch(p); | ((ISingleDriver)p.getDriver()).sendPatch(p); | public void sendSelectedPatch() { p.getDriver().calculateChecksum(p); p.getDriver().sendPatch(p); } | 7591 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7591/af6640fd9aa925c4d7044770be761a3432d7c66e/PatchEditorFrame.java/clean/JSynthLib/core/PatchEditorFrame.java | [
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newElem.setDescription( (String) rowVector.elementAt(6) ); | newElem.setDescription( (String) rowVector.elementAt(7) ); | public void doSave(Object settings, boolean validateOnly) throws Exception { SwingUtilities.invokeAndWait( new Runnable(){ public void run() { ((MEditTableJPanel)configClientToSiteJPanel).getJTable().getCellEditor().stopCellEditing(); ((MEditTableJPanel)configClientToSiteJPanel).getJTable().clearSelection(); filteredDataVector = ((MEditTableJPanel)configClientToSiteJPanel).getTableModel().getFilteredDataVector(); exception = null; elemList = new ArrayList<VpnClient>(filteredDataVector.size()); VpnClient newElem = null; int rowIndex = 0; for( Vector rowVector : filteredDataVector ){ rowIndex++; newElem = new VpnClient(); newElem.setDistributeClient(false); newElem.setLive( (Boolean) rowVector.elementAt(2) ); newElem.setName( (String) rowVector.elementAt(3) ); newElem.setGroup( (VpnGroup) ((ComboBoxModel) rowVector.elementAt(4)).getSelectedItem() ); newElem.setDescription( (String) rowVector.elementAt(6) ); elemList.add(newElem); } }}); if( exception != null) throw exception; if( !validateOnly ){ try{ ServerRoutingWizard.getInfiniteProgressJComponent().startLater("Adding VPN Clients..."); ClientList clientList = new ClientList(elemList); vpnTransform.setClients(clientList); ServerRoutingWizard.getInfiniteProgressJComponent().stopLater(1500l); } catch(Exception e){ ServerRoutingWizard.getInfiniteProgressJComponent().stopLater(-1l); throw e; } } } | 49954 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49954/b38e01d9c4ce757d2e03478dd806dc130acda0f1/ServerRoutingWizardClientsJPanel.java/buggy/tran/openvpn/gui/com/metavize/tran/openvpn/gui/ServerRoutingWizardClientsJPanel.java | [
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return statusFilter; } | return statusFilter; } | public List<String> getStatusFilter() { return statusFilter; } | 47044 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47044/f705b6b4061f18824619feedc8e55c73de10e185/InstanceFilter.java/buggy/bpel-api/src/main/java/org/apache/ode/bpel/common/InstanceFilter.java | [
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return rootPointer; | return (Pointer) rootPointer.clone(); | public synchronized Pointer getContextPointer() { if (rootPointer == null) { rootPointer = NodePointer.newNodePointer(new QName(null, "root"), getContextBean(), getLocale()); } return rootPointer; } | 52531 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52531/2cff9ca4984e054467e6b0efb20d7c462762635a/JXPathContextReferenceImpl.java/buggy/src/java/org/apache/commons/jxpath/ri/JXPathContextReferenceImpl.java | [
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return schema; } | return schema; } | public Schema getSchema() throws OLAPException { return schema; } | 37907 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/37907/b5b5168edc3af09cb74945a80b0c36e6630ed502/MondrianJolapDimension.java/buggy/src/main/mondrian/jolap/MondrianJolapDimension.java | [
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if(getFlag(LOADING) || getFlag(READ_ONLY)) return; if(getFlag(DIRTY) && getFlag(AUTOSAVE_DIRTY)) return; setFlag(DIRTY,true); setFlag(AUTOSAVE_DIRTY,true); | if(isEditable()) { setFlag(DIRTY,true); setFlag(AUTOSAVE_DIRTY,true); } | public void setDirty(boolean d) { boolean old_d = getFlag(DIRTY); if(d) { if(getFlag(LOADING) || getFlag(READ_ONLY)) return; if(getFlag(DIRTY) && getFlag(AUTOSAVE_DIRTY)) return; setFlag(DIRTY,true); setFlag(AUTOSAVE_DIRTY,true); } else { setFlag(DIRTY,false); setFlag(AUTOSAVE_DIRTY,false); if(autosaveFile != null) autosaveFile.delete(); // fixes dirty flag not being reset on // save/insert/undo/redo/undo if(!getFlag(UNDO_IN_PROGRESS)) { // this ensures that undo can clear the dirty flag properly // when all edits up to a save are undone undoMgr.bufferSaved(); } } if(d != old_d) { EditBus.send(new BufferUpdate(this,null, BufferUpdate.DIRTY_CHANGED)); } } //}}} | 8690 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8690/9cacca6aaa265acdb4ed19b91aed40829c2df702/Buffer.java/buggy/org/gjt/sp/jedit/Buffer.java | [
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iVisited.accept(_Payload); | _Payload.visitAndNode(iVisited); | public void visitAndNode(AndNode iVisited) { iVisited.getFirstNode().accept(this); iVisited.accept(_Payload); iVisited.getSecondNode().accept(this); } | 49476 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49476/043fa4419ad506aa6f8843684eb8114b226fe4b5/DefaultIteratorVisitor.java/clean/org/jruby/nodes/visitor/DefaultIteratorVisitor.java | [
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parameters.put( "version", "1.0.0" ); | mojo.setPackageWithVersion( Boolean.TRUE ); | public void testModelloJavaMojo() throws Exception { ModelloCore modelloCore = (ModelloCore) lookup( ModelloCore.ROLE ); ModelloJavaMojo mojo = new ModelloJavaMojo(); File outputDirectory = getTestFile( "target/java-test" ); FileUtils.deleteDirectory( outputDirectory ); // ---------------------------------------------------------------------- // Call the mojo // ---------------------------------------------------------------------- Map parameters = new HashMap(); parameters.put( "outputDirectory", outputDirectory.getAbsolutePath() ); parameters.put( "model", getTestPath( "src/test/resources/java-model.mdo" ) ); parameters.put( "version", "1.0.0" ); parameters.put( "packageWithVersion", "true" ); parameters.put( "modelloCore", modelloCore ); PluginExecutionRequest request = new PluginExecutionRequest( parameters ); PluginExecutionResponse response = new PluginExecutionResponse(); mojo.execute( request, response ); // ---------------------------------------------------------------------- // Assert // ---------------------------------------------------------------------- File javaFile = new File( outputDirectory, "org/codehaus/mojo/modello/javatest/v1_0_0/Model.java" ); assertTrue( "The generated java file doesn't exist: '" + javaFile.getAbsolutePath() + "'.", javaFile.exists() ); } | 47828 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47828/9fce0b24c4f559cdd170c9a5c8cc4d2c5d954503/ModelloJavaMojoTest.java/buggy/modello/modello-maven-plugin/src/test/java/org/codehaus/modello/ModelloJavaMojoTest.java | [
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ps.print(encode.encode(server + " " + usrName + " " + pwd + " " + port + " " + Boolean.valueOf(useTCP).toString())); | ps.print(encode.encode(server + "\n" + usrName + "\n" + pwd + "\n" + port + "\n" + Boolean.valueOf(useTCP).toString())); | private void saveLoginInfo(String server, String usrName, String pwd, String port, boolean useTCP) { Encoder encode = new Encoder(); try { OutputStream os = Persistence.get().getOutputStream("user.dat"); PrintStream ps = new PrintStream(os); ps.print(encode.encode(server + " " + usrName + " " + pwd + " " + port + " " + Boolean.valueOf(useTCP).toString())); ps.close(); } catch (IOException ioex) { JOptionPane .showMessageDialog( this, "Something went wrong when saving login information, nothing saved", "Login information save problem", JOptionPane.WARNING_MESSAGE); } } | 4438 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4438/3e642b0a4d33a93fe7b92763fa7fb069e1b6ae2a/LoginDialog.java/clean/src/games/stendhal/client/gui/LoginDialog.java | [
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this(container, config, new ConstructorInjectionComponentAdapterFactory()); | componentAdapterFactory_ = componentAdapterFactory; container_ = container; MutablePicoContainer parent = container.getContainer(); filterPico_ = parent; orb_ = (ORB) parent.getComponentInstanceOfType(ORB.class); logger_ = LogUtil.getLogger(config, getClass().getName()); loadFilterPlugins(config); | public DefaultFilterFactoryDelegate(IContainer container, Configuration config) { this(container, config, new ConstructorInjectionComponentAdapterFactory()); } | 46355 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46355/b0fbbbc9e38577618188610bbe2a22de8ecfaab7/DefaultFilterFactoryDelegate.java/clean/src/org/jacorb/notification/filter/DefaultFilterFactoryDelegate.java | [
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assertInstanceOf( webClient.getPage( new URL( "https: | assertInstanceOf( webClient.getPage( new URL( "https: HtmlPage.class ); | public void testSourceForge_secure() throws Exception { try { final WebClient webClient = new WebClient(BrowserVersion_); webClient.setPrintContentOnFailingStatusCode(true); assertInstanceOf( webClient.getPage( new URL( "https://sourceforge.net/projects/htmlunit/" ) ), HtmlPage.class ); } catch( final MalformedURLException e ) { System.out.println("Skipping https test: "+getName()); } } | 47843 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47843/ce8302ac28bf1fb5d0cc242a8bf82d819d0eac2c/SanityCheck.java/clean/htmlunit/src/test/java/com/gargoylesoftware/htmlunit/SanityCheck.java | [
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- (prePeek + bottomPeek + Math.max((initFire - 2), 0) * pop); | - initItemsNeeded; | private int calculateRemaining() { // the number of times this filter fires in the initialization // schedule int initFire = initMult; // if this is not a twostage, fake it by adding to initFire, // so we always think the preWork is called // if (!(filter instanceof SIRTwoStageFilter)) if (!filter.isTwoStage()) initFire++; // see my thesis for an explanation of this calculation if (initFire - 1 > 0) { bottomPeek = Math.max(0, peek - (prePeek - prePop)); } else bottomPeek = 0; // don't call initItemsReceived() here it // may cause an infinite loop because it creates filter infos int initItemsRec = 0; if (traceNode.getPrevious().isFilterTrace()) { FilterContent filterC = ((FilterTraceNode) traceNode.getPrevious()) .getFilter(); initItemsRec = filterC.getPushInt() * filterC.getInitMult(); if (filterC.isTwoStage()) { initItemsRec -= filterC.getPushInt(); initItemsRec += filterC.getInitPush(); } } else { // previous is an input trace InputTraceNode in = (InputTraceNode) traceNode.getPrevious(); // add all the upstream filters items that reach this filter for (int i = 0; i < in.getWeights().length; i++) { Edge incoming = in.getSources()[i]; FilterContent filterC = ((FilterTraceNode) incoming.getSrc() .getPrevious()).getFilter(); // calculate the init items sent by the upstream filter int upstreamInitItems = 0; upstreamInitItems = filterC.getPushInt() * filterC.getInitMult(); if (filterC.isTwoStage()) { upstreamInitItems -= filterC.getPushInt(); upstreamInitItems += filterC.getInitPush(); } initItemsRec += (int) ((double) upstreamInitItems * incoming .getSrc().ratio(incoming)); } } remaining = initItemsRec - (prePeek + bottomPeek + Math.max((initFire - 2), 0) * pop); assert remaining >= 0 : filter.getName() + ": Error calculating remaining " + initItemsRec + " < " + (prePeek + bottomPeek + Math.max((initFire - 2), 0) * pop); return remaining; } | 5955 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5955/e0d1d883cbfe8463aae88672e4adf65f19971500/FilterInfo.java/clean/streams/src/at/dms/kjc/spacetime/FilterInfo.java | [
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throw new TaskExecutionException("Unexpected, multiple output names for ArrayType"); | throw new TaskExecutionException( "Unexpected, multiple output names for ArrayType"); | public Map execute(Map inputMap) throws TaskExecutionException { DataThing inputThing = (DataThing) inputMap.get(inputNames[0]); Map result = new HashMap(); List outputNameList = Arrays.asList(outputNames); if (inputThing != null) { String xml = inputThing.getDataObject().toString(); try { Document doc = new SAXBuilder().build(new StringReader(xml)); List children = doc.getRootElement().getChildren(); if (typeDescriptor instanceof ArrayTypeDescriptor) { if (outputNames.length > 1) throw new TaskExecutionException("Unexpected, multiple output names for ArrayType"); executeForArrayType(result, children); } else { executeForComplexType(result, outputNameList, children); } // populate missing outputs with empty strings for basic types, // empty elements for complex/array types. for (int i = 0; i < outputNames.length; i++) { if (result.get(outputNames[i]) == null) { if (outputTypes[i].equals("'text/xml'")) { result.put(outputNames[i], new DataThing("<" + outputNames[i] + " />")); } else if (outputTypes[i].startsWith("l('")) { result.put(outputNames[i], DataThingFactory.bake(new ArrayList())); } else { result.put(outputNames[i], new DataThing("")); } } } } catch (JDOMException e) { throw new TaskExecutionException("Unable to parse XML: " + xml, e); } catch (IOException e) { throw new TaskExecutionException("IOException parsing XML: " + xml, e); } } return result; } | 7616 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7616/acee3e590ed2584ecc041bfef9b98f0c4848e68a/XMLOutputSplitter.java/clean/trunk/taverna1.0/processors/taverna-wsdl-processor/src/main/java/org/embl/ebi/escience/scuflworkers/java/XMLOutputSplitter.java | [
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if (methodId == Id_JavaAdapter) { return 1; } throw IdFunction.onBadMethodId(this, methodId); | if (f.hasTag(FTAG)) { if (f.methodId == Id_JavaAdapter) { return 1; } } throw f.unknown(); | public int methodArity(int methodId) { if (methodId == Id_JavaAdapter) { return 1; } throw IdFunction.onBadMethodId(this, methodId); } | 13991 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13991/8f28fc868ac3f30ea37494abfddb6358154786c3/JavaAdapter.java/clean/js/rhino/src/org/mozilla/javascript/JavaAdapter.java | [
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try { tag.setAttribute(getXmlElementName(), null); } catch (IncorrectOperationException e) { LOG.error(e); } | getManager().runChange(new Runnable() { public void run() { try { tag.setAttribute(getXmlElementName(), null); } catch (IncorrectOperationException e) { LOG.error(e); } } }); | public final void undefineInternal() { final XmlTag tag = getXmlTag(); setDefined(false); setXmlTagToNull(); if (tag != null) { try { tag.setAttribute(getXmlElementName(), null); } catch (IncorrectOperationException e) { LOG.error(e); } fireUndefinedEvent(); } } | 17306 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17306/4437ca2f304024137a05082977d946a80498d240/AttributeChildInvocationHandler.java/buggy/dom/impl/src/com/intellij/util/xml/impl/AttributeChildInvocationHandler.java | [
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return getAllKnownEntities(native2Flavor, flavor2Native); | return new ArrayList(native2Flavor.keySet()); | public synchronized List getNativesForFlavor(DataFlavor flav) { if (flav == null) { return getAllKnownEntities(native2Flavor, flavor2Native); } List natives = (List) flavor2Native.get(flav); if (natives == null) { natives = new LinkedList(); } if (flav.isFlavorTextType()) { getNativesForText(natives); } else if (natives.isEmpty()) { String encodedNat = encodeDataFlavor(flav); List flavors = (List) native2Flavor.get(encodedNat); natives.add(encodedNat); flavor2Native.put(flav, natives); if (flavors == null) { flavors = new LinkedList(); native2Flavor.put(encodedNat, flavors); } if (!flavors.contains(flav)) { flavors.add(flav); } } return natives; } | 54769 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54769/9b00f971bab2256d913aec1b141462a929f6e182/SystemFlavorMap.java/buggy/modules/awt/src/main/java/common/java/awt/datatransfer/SystemFlavorMap.java | [
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simplify.setText(file.getAbsolutePath()); | String name = file.getAbsolutePath(); simplify.setText(name); System.setProperty("simplify",name); | public void actionPerformed(ActionEvent e) { JFileChooser fc = new JFileChooser(); fc.setApproveButtonText("Select"); int returnVal = fc.showOpenDialog(EscOptions.this); if (returnVal == JFileChooser.APPROVE_OPTION) { java.io.File file = fc.getSelectedFile(); simplify.setText(file.getAbsolutePath()); } } | 46634 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46634/6a5c1624a7ad0a07cc712c331ce67fee4a8fc61e/EscOptions.java/clean/src/escjava/trunk/ESCTools/Escjava/java/escjava/gui/EscOptions.java | [
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" 6 getstatic java/lang/System.out Ljava/io/PrintStream; [21]\n" + | " 6 getstatic java.lang.System.out : java.io.PrintStream [21]\n" + | public void test001() { this.runConformTest( new String[] { "X.java", "public class X { \n" + " public static void main(String[] args) { \n" + " Cloneable c1 = new int[0]; \n"+ " Cloneable c2 = (Cloneable)c1; \n" + " System.out.print(\"SUCCESS\"); \n" + " } \n" + "} \n", }, "SUCCESS"); ClassFileBytesDisassembler disassembler = ToolFactory.createDefaultClassFileBytesDisassembler(); String actualOutput = null; try { byte[] classFileBytes = org.eclipse.jdt.internal.compiler.util.Util.getFileByteContent(new File(OUTPUT_DIR + File.separator +"X.class")); actualOutput = disassembler.disassemble( classFileBytes, "\n", ClassFileBytesDisassembler.DETAILED); } catch (org.eclipse.jdt.core.util.ClassFormatException e) { assertTrue("ClassFormatException", false); } catch (IOException e) { assertTrue("IOException", false); } String expectedOutput = " // Method descriptor #15 ([Ljava/lang/String;)V\n" + " // Stack: 2, Locals: 3\n" + " public static void main(String[] args);\n" + " 0 iconst_0\n" + " 1 newarray int [10]\n" + " 3 astore_1 [c1]\n" + " 4 aload_1 [c1]\n" + " 5 astore_2 [c2]\n" + " 6 getstatic java/lang/System.out Ljava/io/PrintStream; [21]\n" + " 9 ldc <String \"SUCCESS\"> [23]\n" + " 11 invokevirtual java/io/PrintStream.print(Ljava/lang/String;)V [29]\n" + " 14 return\n" + " Line numbers:\n" + " [pc: 0, line: 3]\n" + " [pc: 4, line: 4]\n" + " [pc: 6, line: 5]\n" + " [pc: 14, line: 6]\n" + " Local variable table:\n" + " [pc: 0, pc: 15] local: args index: 0 type: [Ljava/lang/String;\n" + " [pc: 4, pc: 15] local: c1 index: 1 type: Ljava/lang/Cloneable;\n" + " [pc: 6, pc: 15] local: c2 index: 2 type: Ljava/lang/Cloneable;\n"; int index = actualOutput.indexOf(expectedOutput); if (index == -1 || expectedOutput.length() == 0) { System.out.println(Util.displayString(actualOutput, 2)); } if (index == -1) { assertEquals("Wrong contents", expectedOutput, actualOutput); }} | 10698 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10698/e9ca95978aca2a442bfecfb8ac281f372092486a/CastTest.java/buggy/org.eclipse.jdt.core.tests.compiler/src/org/eclipse/jdt/core/tests/compiler/regression/CastTest.java | [
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throw new NameError( ruby, | throw new NameError(ruby, | public RubyObject method_missing(RubyObject symbol, RubyObject[] args) { // +++ // IMPLEMENT THIS METHOD // --- Ruby ruby = getRuby(); throw new NameError( ruby, ruby.getSourceFile() + ":" + ruby.getSourceLine() + " undefined method '" + symbol.toId() + "' for '" + type().toName() + '\''); } | 1060 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1060/4e4bb40b2eb2d38881d15ca8ef7cda4c34323793/RubyObject.java/clean/org/jruby/RubyObject.java | [
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min = Integer.MAX_VALUE; for(index = 0; index < orderedItems ; index++) { if ( num_normal_turns[index] != 0 && num_normal_turns[index] < min) min = num_normal_turns[index]; } | min = Integer.MAX_VALUE; for(index = 0; index < orderedItems ; index++) { if ( num_normal_turns[index] != 0 && num_normal_turns[index] < min) min = num_normal_turns[index]; } | public static TurnVectors generateTurnOrder( Vector v, IGame game ) { int[] num_even_turns = new int[v.size()]; int[] num_normal_turns = new int[v.size()]; int total_even_turns = 0; int total_normal_turns = 0; int index; TurnOrdered[] order = new TurnOrdered[v.size()]; int orderedItems = 0; com.sun.java.util.collections.ArrayList plist = new com.sun.java.util.collections.ArrayList(v.size()); for (Enumeration i = v.elements(); i.hasMoreElements();) { Object item = i.nextElement(); plist.add(item); } com.sun.java.util.collections.Collections.sort(plist, new com.sun.java.util.collections.Comparator() { public int compare(Object o1, Object o2) { return ((TurnOrdered)o1).getInitiative().compareTo(((TurnOrdered)o2).getInitiative()); } }); // Walk through the ordered items. for ( com.sun.java.util.collections.Iterator i = plist.iterator(); i.hasNext(); orderedItems++ ) { final TurnOrdered item = (TurnOrdered)i.next(); order[orderedItems] = item; // Track even turns separately from the normal turns. num_normal_turns[orderedItems] = item.getNormalTurns(game); num_even_turns[orderedItems] = item.getEvenTurns(); // Keep a running total. total_even_turns += num_even_turns[orderedItems]; total_normal_turns += num_normal_turns[orderedItems]; } int min; int turns_left; // We will do the 'normal' turns first, and then the 'even' turns. min = Integer.MAX_VALUE; for(index = 0; index < orderedItems ; index++) { if ( num_normal_turns[index] != 0 && num_normal_turns[index] < min) min = num_normal_turns[index]; } TurnVectors turns = new TurnVectors(total_normal_turns, total_even_turns, min); // Allocate the normal turns. turns_left = total_normal_turns; while (turns_left > 0) { for (index = 0; index < orderedItems; index++) { // If you have no turns here, skip if (num_normal_turns[index] == 0) continue; // If you have less than twice the lowest, // move 1. Otherwise, move more. int ntm = num_normal_turns[index] / min; for (int j = 0; j < ntm; j++) { turns.addNormal(order[index]); num_normal_turns[index]--; turns_left--; } } // Since the smallest unit count had to place 1, reduce min) min--; } // Handle the next 'normal' turn. // Now, we allocate the 'even' turns, if there are any. if ( total_even_turns > 0 ) { min = Integer.MAX_VALUE; for (index = 0; index < orderedItems ; index++) { if ( num_even_turns[index] != 0 && num_even_turns[index] < min) min = num_even_turns[index]; } turns_left = total_even_turns; while (turns_left > 0) { for (index = 0; index < orderedItems; index++) { // If you have no turns here, skip if (num_even_turns[index] == 0) continue; // If you have less than twice the lowest, // move 1. Otherwise, move more. int ntm = num_even_turns[index] / min; for (int j = 0; j < ntm; j++) { turns.addEven(order[index]); num_even_turns[index]--; turns_left--; } } // Since the smallest unit count had to place 1, reduce min) min--; } // Handle the next 'even' turn } // End have-'even'-turns return turns; } | 4135 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4135/f4a72f650dc986645cb9c7ceba68b40c099515a5/TurnOrdered.java/clean/megamek/src/megamek/common/TurnOrdered.java | [
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if ( img == null ) | if ( url != null ) | public void handleEvent( Event event ) { // change description/image selectedIndex = templateList.getSelectionIndex( ); description.setText( ( (Template) templates.get( selectedIndex ) ).getTemplateDescription( ) ); // we need to relayout if the new text has different number of lines previewPane.layout( ); Template selTemplate = (Template) templates.get( selectedIndex ); String key = selTemplate.getPictureName( ); Object img = null; if ( (key != null) && (!"".equals( key.trim( ) )) ) //$NON-NLS-1$ { key = selTemplate.getPictureFullName( ); img = imageMap.get( key ); if ( img == null ) { img = ReportPlugin.getImage( key ); imageMap.put( key, img ); } previewCanvas.setVisible( true ); previewThumbnail.setVisible( false ); previewCanvas.clear( ); previewCanvas.loadImage( ( (Image) img ) ); previewCanvas.showOriginal( ); }else if(selTemplate.getThumbnail( ) != null && selTemplate.getThumbnail( ).length != 0) { previewCanvas.setVisible( true ); previewThumbnail.setVisible( false ); byte[] thumbnailData = selTemplate.getThumbnail( ); ByteArrayInputStream inputStream = new ByteArrayInputStream( thumbnailData ); if(thumbnailImage != null) { thumbnailImage.dispose( ); thumbnailImage = null; } thumbnailImage = new Image( null, inputStream ); previewCanvas.clear( ); previewCanvas.loadImage( ( (Image) thumbnailImage ) ); } else { previewCanvas.setVisible( false ); previewThumbnail.setVisible( true ); Control[] children = previewThumbnail.getChildren( ); for ( int i = 0; i < children.length; i++ ) { children[i].dispose( ); } ReportGraphicsViewComposite thumbnail = new ReportGraphicsViewComposite( previewThumbnail, SWT.NULL, ( (Template) templates.get( selectedIndex ) ).getReportDesignHandle( ) ); previewThumbnail.layout( ); } chkBox.setEnabled( !( ( (Template) templates.get( selectedIndex ) ).getCheatSheetId( ) .equals( "" ) || ( (Template) templates.get( selectedIndex ) ).getCheatSheetId( ) .equals( "org.eclipse.birt.report.designer.ui.cheatsheet.firstreport" ) ) ); //$NON-NLS-1$ } | 46013 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46013/76ebe408a984f02b49cbaf1597c0c7a0213901fe/WizardTemplateChoicePage.java/clean/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/internal/ui/wizards/WizardTemplateChoicePage.java | [
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listener.logRevision(revision); | listener.logRevision(revision, path); | public void logRevision(long revision) { if (logEnabled) { for(Iterator it=notifylisteners.iterator(); it.hasNext();) { ISVNNotifyListener listener = (ISVNNotifyListener)it.next(); listener.logRevision(revision); } } } | 6016 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6016/166f3651101ab7f39c5b4b99f46a9cd3d72d145a/SVNNotificationHandler.java/buggy/svnClientAdapter/src/main/org/tigris/subversion/svnclientadapter/SVNNotificationHandler.java | [
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Context.enter(); contextEntered = true; | public int jsxFunction_setTimeout(final String script, final int timeout) { final Runnable runnable = new Runnable() { public void run() { final Window window = Window.this; final Page page = window.getWebWindow().getEnclosedPage(); boolean contextEntered = false; try { Thread.sleep(timeout); window.getLog().debug("Executing timeout: " + script); final WebWindow webWindow = window.getWebWindow(); // test that the window is always opened and the page the same if (!webWindow.getWebClient().getWebWindows().contains(webWindow) || webWindow.getEnclosedPage() != page) { window.getLog().debug("the page that originated the setTimeout doesnt exist anymore. " + "Execution cancelled."); return; } // Register this thread with the rhino engine Context.enter(); contextEntered = true; final HtmlPage htmlPage = window.document_.getHtmlPage(); htmlPage.executeJavaScriptIfPossible( script, "Window.setTimeout()", true, htmlPage.getDocumentElement()); } catch( final InterruptedException e ) { window.getLog().debug("JavaScript timeout thread interrupted; clearTimeout() probably called."); } catch( final Exception e ) { window.getLog().error("Caught exception in Window.setTimeout()", e); } finally { if (contextEntered) { // Deregister this thread with the rhino engine Context.exit(); } } } }; final int id = nextTimeoutId_++; final String threadName = "HtmlUnit setTimeout() Thread " + id; final Thread setTimeoutThread = new Thread(runnable, threadName); timeoutThreads_.put(new Integer(id), setTimeoutThread); setTimeoutThread.setPriority(Thread.currentThread().getPriority() + 1); setTimeoutThread.start(); return id; } | 3508 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3508/9ada24d275eb4c948830a5fbefb54293d8fa03f5/Window.java/buggy/htmlunit/src/java/com/gargoylesoftware/htmlunit/javascript/host/Window.java | [
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return (Occurrences[])map.values().toArray(result); | return (Occurrences[]) map.values().toArray(result); | public Occurrences[] scanIndexedElements(User user, Collection collection, boolean inclusive) throws PermissionDeniedException { if(!collection.getPermissions().validate(user, Permission.READ)) throw new PermissionDeniedException("you don't have the permission" + " to read collection " + collection.getName()); List collections = inclusive ? collection.getDescendants(user) : new ArrayList(); collections.add(collection); short collectionId, elementId; ElementValue ref; IndexQuery query; ArrayList values; Value val[]; String name; Collection current; Int2ObjectAVLTreeMap map = new Int2ObjectAVLTreeMap(); Occurrences oc; VariableByteInputStream is; int docId; int len; final Lock lock = elementsDb.getLock(); for (Iterator i = collections.iterator(); i.hasNext();) { current = (Collection) i.next(); collectionId = current.getId(); ref = new ElementValue(collectionId); query = new IndexQuery(null, IndexQuery.TRUNC_RIGHT, ref); try { lock.acquire(this); lock.enter(this); values = elementsDb.findEntries(query); for (Iterator j = values.iterator(); j.hasNext();) { val = (Value[]) j.next(); elementId = ByteConversion.byteToShort(val[0].getData(), 2); name = NativeBroker.getSymbols().getName(elementId); oc = (Occurrences) map.get(elementId); if (oc == null) { oc = new Occurrences(name); map.put(elementId, oc); } is = new VariableByteInputStream( val[1].data(), val[1].start(), val[1].length()); try { while (is.available() > 0) { docId = is.readInt(); len = is.readInt(); oc.addOccurrences(len); is.skip(len * 3); } } catch (EOFException e) { e.printStackTrace(); } } } catch (BTreeException e) { LOG.warn("exception while reading element index", e); } catch (IOException e) { LOG.warn("exception while reading element index", e); } catch (LockException e) { LOG.warn("failed to acquire lock", e); } finally { lock.release(this); } } Occurrences[] result = new Occurrences[map.size()]; return (Occurrences[])map.values().toArray(result); } | 2909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2909/81cd2509ad2f1c1446b8399acb5ad675556e5d31/NativeBroker.java/clean/src/org/exist/storage/NativeBroker.java | [
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removeJButtonActionPerformed(e); | viewJButtonActionPerformed(e); | public void actionPerformed(java.awt.event.ActionEvent e) { removeJButtonActionPerformed(e); } | 53635 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53635/ac301cd5fc9d341e3e7b83d05bdf6262108dae06/Manage.java/buggy/client-ui/src/main/java/com/thinkparity/browser/application/browser/display/avatar/contact/Manage.java | [
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private ChartPanel createLineChart(XYDataset dataset, boolean showDecimal) { JFreeChart jFreeChart = MVChartFactory.createXYLineChart(null,null,null, dataset, PlotOrientation.VERTICAL, false,false,false); jFreeChart.setBackgroundPaint(Color.BLACK); XYPlot plot = jFreeChart.getXYPlot(); plot.setBackgroundPaint(Color.BLACK); plot.setOutlinePaint(null); plot.getRenderer().setSeriesPaint(0, new Color(.5f, .5f, 1f)); plot.getRenderer().setSeriesPaint(1, new Color(.5f, .25f, .5f)); plot.setInsets(new RectangleInsets(4,0,6,2), false); plot.setDomainCrosshairVisible(false); plot.setDomainGridlinesVisible(false); plot.setRangeCrosshairVisible(false); plot.setRangeGridlinesVisible(false); plot.setFixedDomainAxisSpace(null); NumberAxis axis = (NumberAxis) plot.getDomainAxis(); axis.setVisible(false); axis.setFixedAutoRange(60000.0); // 60 seconds axis.setAxisLineVisible(false); axis.setTickMarksVisible(false); axis = (NumberAxis) plot.getRangeAxis(); axis.setVisible(true); axis.setAutoRange(true); axis.setAutoRangeIncludesZero(false); axis.setAutoRangeStickyZero(false); axis.setAxisLineVisible(true); axis.setTickLabelFont(new java.awt.Font("Dialog", 0, 8)); axis.setTickLabelPaint(new Color(190, 190, 190)); if( showDecimal == false ){ DecimalFormat decimalFormat = new DecimalFormat(); decimalFormat.setMaximumIntegerDigits(7); decimalFormat.setMaximumFractionDigits(1); decimalFormat.setMinimumIntegerDigits(1); decimalFormat.setMinimumFractionDigits(0); axis.setNumberFormatOverride(decimalFormat); //axis.setTickUnit( new NumberTickUnit(1d) ); } else{ DecimalFormat decimalFormat = new DecimalFormat(); decimalFormat.setMaximumIntegerDigits(7); decimalFormat.setMaximumFractionDigits(3); decimalFormat.setMinimumIntegerDigits(1); decimalFormat.setMinimumFractionDigits(0); axis.setNumberFormatOverride(decimalFormat); } ChartPanel chartPanel = new ChartPanel(jFreeChart, false, false, false, false, false); chartPanel.setOpaque(true); chartPanel.setMinimumDrawHeight(20); chartPanel.setMinimumDrawWidth(20); chartPanel.setMouseZoomable(false); return chartPanel; } | 49954 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49954/e77e3def44c7f8608759d99086bba6d4a2017c7b/MTransformDisplayJPanel.java/clean/gui/main/com/metavize/gui/transform/MTransformDisplayJPanel.java | [
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if(max != -1 && seqNumber - max > 1) { | if((max != -1) && (seqNumber - max > 1)) { | private void queueResendRequests(int seqNumber) { int max; synchronized(this) { max = packetNumbersReceived.highest(); } if(seqNumber > max) { try { if(max != -1 && seqNumber - max > 1) { Logger.minor(this, "Queueing resends from "+max+" to "+seqNumber); // Missed some packets out for(int i=max+1;i<seqNumber;i++) { queueResendRequest(i); } } } catch (UpdatableSortedLinkedListKilledException e) { // Ignore (we are decoding packet, not sending one) } } } | 50619 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50619/ca136843ae9ecb30cadada58a33a5dc2cf8ad064/KeyTracker.java/buggy/src/freenet/node/KeyTracker.java | [
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String structure_table = dataset+"_structure"; | String structure_table = dataset+"_structure_dm"; | public void execute(int limit) throws SequenceException, InvalidQueryException { SequenceDescription seqd = query.getSequenceDescription(); boolean moreRows = true; int batchStart = 0; // need to know these indexes specifically int queryIDindex = 0; int tranIDindex = 0; int rankIndex = 0; int assemblyIndex = 0; int startIndex = 0; int endIndex = 0; int chromIndex = 0; int strandIndex = 0; List displayIDindices = new ArrayList(); List otherIndices = new ArrayList(); queryID = "gene_id"; coordStart = "exon_chrom_start"; coordEnd = "exon_chrom_end"; displayIDs.add("exon_stable_id_v"); displayIDs.add("gene_stable_id_v"); displayIDs.add("transcript_stable_id_v"); updateQuery(); Attribute[] attributes = query.getAttributes(); try { CompiledSQLQuery csql = new CompiledSQLQuery( conn, query ); String sqlbase = csql.toSQL(); String structure_table = dataset+"_structure"; sqlbase += " order by "+structure_table+".gene_id, "+structure_table+".transcript_id, "+structure_table+".rank"; while (moreRows) { String sql = sqlbase; if (limit > 0) { sql += " limit "+limit; moreRows = false; } else { sql += " limit "+batchStart+" , "+batchLength; batchStart += batchLength; } logger.info( "QUERY : " + query ); logger.info( "SQL : " +sql ); PreparedStatement ps = conn.prepareStatement( sql ); int p=1; for( int i=0, n=query.getFilters().length; i<n; ++i) { Filter f = query.getFilters()[i]; String value = f.getValue(); if ( value!=null ) { logger.info("SQL (prepared statement value) : "+p+" = " + value); ps.setString( p++, value); } } ResultSet rs = ps.executeQuery(); ResultSetMetaData rmeta = rs.getMetaData(); // process columnNames for required attribute indices for (int i = 1, nColumns = rmeta.getColumnCount(); i <= nColumns; ++i) { String column = rmeta.getColumnName(i); if (column.equals(queryID)) queryIDindex = i; else if (column.equals(TranscriptID)) tranIDindex = i; else if (column.equals(Rank)) rankIndex = i; else if (column.equals(AssemblyColumn)) assemblyIndex = i; else if (column.equals(coordStart)) startIndex = i; else if (column.equals(coordEnd)) endIndex = i; else if (column.equals(Chr)) chromIndex = i; else if (column.equals(StrandColumn)) strandIndex = i; else if (displayIDs.contains(column)) displayIDindices.add(new Integer(i)); else otherIndices.add(new Integer(i)); } int rows = 0; //rowcount Integer lastGene = new Integer(0); // will nold last geneID when new one is encountered while ( rs.next() ) { rows++; Integer geneID = new Integer(rs.getInt(queryIDindex)); Integer tranID = new Integer(rs.getInt(tranIDindex)); Integer rank = new Integer(rs.getInt(rankIndex)); if (! geneiDs.containsKey(geneID)) { if (geneiDs.size() > 0) { // write the previous genes data, and refresh the geneiDs TreeMap seqWriter.writeSequences(lastGene); geneiDs = new TreeMap(); } lastGene = geneID; Hashtable atts = new Hashtable(); //order the transcripts by their rank in ascending order atts.put(Transcripts, new TreeMap()); atts.put(Assembly, rs.getString(assemblyIndex)); geneiDs.put(geneID, atts); } Hashtable geneatts = (Hashtable) geneiDs.get(geneID); TreeMap ordtrans = (TreeMap) geneatts.get(Transcripts); if (! (ordtrans.containsKey(tranID))) ordtrans.put(tranID, new Hashtable()); int start = rs.getInt(startIndex); if (start > 0) { // if start is not null, create a new SequenceLocation object from the chr, start, end, and strand String chr = rs.getString(chromIndex); int end = rs.getInt(endIndex); int strand = rs.getInt(strandIndex); Hashtable tranatts = (Hashtable) ordtrans.get(tranID); // keep track of the lowest start and highest end for the gene if (! ( geneatts.containsKey(Geneloc) ) ) { geneatts.put(Geneloc, new SequenceLocation(chr, start, end, strand)); } else { SequenceLocation geneloc = (SequenceLocation) geneatts.get(Geneloc); if (start < geneloc.getStart()) geneatts.put(Geneloc, new SequenceLocation(chr, start, geneloc.getEnd(), strand)); // overwrite the previous copy if (end > geneloc.getEnd()) geneatts.put(Geneloc, new SequenceLocation(chr, geneloc.getStart(), end, strand)); // overwrite the previous copy } // store each exon in rank order if (!( tranatts.containsKey(Exons))) { TreeMap exonMap = new TreeMap(); tranatts.put(Exons, new TreeMap()); } // need to add this exon to the Exons Hashtable exonatts = new Hashtable(); exonatts.put(Location, new SequenceLocation(chr, start, end, strand)); ( (TreeMap) ( tranatts.get(Exons) ) ).put(rank, exonatts); } Hashtable exonatts = (Hashtable) ( (TreeMap) ((Hashtable) ordtrans.get(tranID)).get(Exons) ).get(rank); // just need the information for this exon // process displayID, if necessary if (! ( exonatts.containsKey(DisplayID) )) { StringBuffer displayID = new StringBuffer(); for (int i = 0, n = displayIDindices.size(); i < n; i++) { if (i>0) displayID.append( separator ); int currindex = ((Integer) displayIDindices.get(i)).intValue(); if ( rs.getString(currindex) != null ) displayID.append( rs.getString(currindex) ); } exonatts.put(DisplayID, displayID.toString()); } // Rest can be duplicates, or novel values for a given field, collect lists of values for each field // currindex is now the last index of the DisplayIDs. Increment it, and iterate over the rest of the ResultSet to print the description for (int i = 0, n = otherIndices.size(); i < n; i++) { int currindex = ((Integer) otherIndices.get(i)).intValue(); if (rs.getString(currindex) != null ) { String field = attributes[currindex-1].getName(); if (! fields.contains(field)) fields.add(field); String value = rs.getString(currindex); if (exonatts.containsKey(field)) { if (! ( (ArrayList) exonatts.get(field) ).contains(value)) ( (ArrayList) exonatts.get(field) ).add(value); } else { List values = new ArrayList(); values.add(value); exonatts.put(field, values); } } } // add the description, if necessary if (! exonatts.containsKey(Description)) exonatts.put( Description, seqd.getDescription() ); } // write the last genes data, if present if (lastGene.intValue() > 0) seqWriter.writeSequences(lastGene); if (rows < batchLength) moreRows = false; } osr.close(); } catch (SQLException e) { logger.warn(e.getMessage()); throw new InvalidQueryException(e); } catch (IOException e) { logger.warn("Could not write to IO "+e.getMessage()); throw new SequenceException(e); } } | 2000 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2000/bd4e836ab13ff8d0c7ef0a8b87d4e965a42d5e97/TranscriptExonSeqQueryRunner.java/buggy/src/java/org/ensembl/mart/explorer/TranscriptExonSeqQueryRunner.java | [
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cat.debug("type="+data2.getType()); | log.debug("type="+data2.getType()); | public void test02LookupAndChangeUser() throws Exception { cat.debug(">test02LookupAndChangeUser()"); UserDataPK pk = new UserDataPK(username); cat.debug("pk="+ pk); UserDataRemote data2 = home.findByPrimaryKey(pk); cat.debug("found by key! ="+ data2); cat.debug("username="+data2.getUsername()); assertTrue( "wrong username", data2.getUsername().equals(username) ); cat.debug("subject="+data2.getSubjectDN()); assertTrue( "wrong DN", data2.getSubjectDN().indexOf(username) != -1); cat.debug("email="+data2.getSubjectEmail()); assertNull( "wrong email", data2.getSubjectEmail()); cat.debug("status="+data2.getStatus()); assertTrue( "wrong status", data2.getStatus() == UserDataRemote.STATUS_NEW ); cat.debug("type="+data2.getType()); assertTrue( "wrong type", data2.getType() == SecConst.USER_INVALID); cat.debug("password foo123 returned " + data2.comparePassword("foo123")); assertTrue( "wrong pwd (foo123 works)", data2.comparePassword("foo123")==false); cat.debug("password "+pwd+" returned " + data2.comparePassword(pwd)); assertTrue( "wrong pwd "+pwd, data2.comparePassword(pwd)); data2.setStatus(UserDataRemote.STATUS_GENERATED); data2.setType(SecConst.USER_ENDUSER); data2.setPassword("foo123"); data2.setSubjectEmail(username+"@anatom.se"); cat.debug("Changed it"); cat.debug("<test02LookupAndChangeUser()"); } | 4109 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4109/16e6a1dbcc54470e8d05f9bc7fdc7e7ebb6fe13c/TestUserData.java/clean/src/java/se/anatom/ejbca/ra/junit/TestUserData.java | [
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ExceptionSet exceptionTypeSet = new ExceptionSet(); | ExceptionSet exceptionTypeSet = exceptionSetFactory.createExceptionSet(); | private ExceptionSet computeThrownExceptionTypes(BasicBlock basicBlock) throws ClassNotFoundException, DataflowAnalysisException { ExceptionSet exceptionTypeSet = new ExceptionSet(); InstructionHandle pei = basicBlock.getExceptionThrower(); Instruction ins = pei.getInstruction(); // Get the exceptions that BCEL knows about. // Note that all of these are unchecked. ExceptionThrower exceptionThrower = (ExceptionThrower) ins; Class[] exceptionList = exceptionThrower.getExceptions(); for (int i = 0; i < exceptionList.length; ++i) { exceptionTypeSet.addImplicit(new ObjectType(exceptionList[i].getName())); } // Assume that an Error may be thrown by any instruction. exceptionTypeSet.addImplicit(Hierarchy.ERROR_TYPE); if (ins instanceof ATHROW) { // For ATHROW instructions, we generate *two* blocks // for which the ATHROW is an exception thrower. // // - The first, empty basic block, does the null check // - The second block, which actually contains the ATHROW, // throws the object on the top of the operand stack // // We make a special case of the block containing the ATHROW, // by removing all of the implicit exceptions, // and using type information to figure out what is thrown. if (basicBlock.containsInstruction(pei)) { // This is the actual ATHROW, not the null check // and implicit exceptions. exceptionTypeSet.clear(); // The frame containing the thrown value is the start fact // for the block, because ATHROW is guaranteed to be // the only instruction in the block. TypeFrame frame = getStartFact(basicBlock); // Check whether or not the frame is valid. // Sun's javac sometimes emits unreachable code. // For example, it will emit code that follows a JSR // subroutine call that never returns. // If the frame is invalid, then we can just make // a conservative assumption that anything could be // thrown at this ATHROW. if (!frame.isValid()) { exceptionTypeSet.addExplicit(Type.THROWABLE); } else { Type throwType = frame.getTopValue(); if (throwType instanceof ObjectType) { exceptionTypeSet.addExplicit((ObjectType) throwType); } else if (throwType instanceof ExceptionObjectType) { exceptionTypeSet.addAll(((ExceptionObjectType)throwType).getExceptionSet()); } else { // Not sure what is being thrown here. // Be conservative. if (DEBUG) { System.out.println("Non object type " + throwType + " thrown by " + pei + " in " + SignatureConverter.convertMethodSignature(methodGen)); } exceptionTypeSet.addExplicit(Type.THROWABLE); } } } } // If it's an InvokeInstruction, add declared exceptions and RuntimeException if (ins instanceof InvokeInstruction) { ConstantPoolGen cpg = methodGen.getConstantPool(); InvokeInstruction inv = (InvokeInstruction) ins; ObjectType[] declaredExceptionList = Hierarchy.findDeclaredExceptions(inv, cpg); if (declaredExceptionList == null) { // Couldn't find declared exceptions, // so conservatively assume it could thrown any checked exception. if (DEBUG) System.out.println("Couldn't find declared exceptions for " + SignatureConverter.convertMethodSignature(inv, cpg)); exceptionTypeSet.addExplicit(Hierarchy.EXCEPTION_TYPE); } else { for (int i = 0; i < declaredExceptionList.length; ++i) { exceptionTypeSet.addExplicit(declaredExceptionList[i]); } } exceptionTypeSet.addImplicit(Hierarchy.RUNTIME_EXCEPTION_TYPE); } if (DEBUG) System.out.println(pei + " can throw " + exceptionTypeSet); return exceptionTypeSet; } | 10715 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10715/66516145e1df96c10b637dff8fc6b0c2aecb568c/TypeAnalysis.java/buggy/findbugs/src/java/edu/umd/cs/findbugs/ba/TypeAnalysis.java | [
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fireModelUpdate(lastElement, ChangeKind.REMOVED); | if (Workbench.getInstance().getActiveWorkbenchWindow().getActivePage().getActivePart() instanceof PackageExplorerPart) { if (FilterPackageExplorerAction.getDefault() != null && FilterPackageExplorerAction.getDefault().isChecked()) { fireModelUpdate(lastElement, ChangeKind.REMOVED); } } else { fireModelUpdate(lastElement, ChangeKind.REMOVED); } | public void interestChanged(List<ITaskscapeNode> nodes) { if (!MylarUiPlugin.getDefault().isGlobalFilteringEnabled()) return; if (MylarPlugin.getTaskscapeManager().getTempRaisedHandle() != null) { final IJavaElement raisedElement = JavaCore.create(MylarPlugin.getTaskscapeManager().getTempRaisedHandle()); final PackageExplorerPart packageExplorer = PackageExplorerPart.getFromActivePerspective(); if (packageExplorer != null) { Workbench.getInstance().getDisplay().asyncExec(new Runnable() { public void run() { packageExplorer.getTreeViewer().refresh(raisedElement.getParent()); } }); } } else { ITaskscapeNode lastNode = nodes.get(nodes.size()-1); IJavaElement lastElement = JavaCore.create(lastNode.getElementHandle()); PackageExplorerPart packageExplorer = PackageExplorerPart.getFromActivePerspective(); if (packageExplorer != null && lastElement != null) { // HACK: use a more reasoanble method if (packageExplorer.getTreeViewer().testFindItem(lastElement) == null) { for (ITaskscapeNode node : nodes) { IJavaElement element = JavaCore.create(node.getElementHandle()); if (element != null && element.exists()) { if (node.getDegreeOfInterest().isInteresting()) { fireModelUpdate(element, ChangeKind.ADDED); } } } } else if (lastElement != null) { if (!lastNode.getDegreeOfInterest().isInteresting()) { fireModelUpdate(lastElement, ChangeKind.REMOVED); } } } if (lastElement != null) { revealInPackageExplorer(lastElement); } } } | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/244d72134d5ef4d6c45e2bda4ea1af4f1cfc52e0/JavaUiUpdateBridge.java/buggy/org.eclipse.mylyn.java.ui/src/org/eclipse/mylyn/java/JavaUiUpdateBridge.java | [
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Map.Entry<AvailableLoad, ValueNumber[]> entry = i.next(); | AvailableLoad key = i.next(); ValueNumber[] value = availableLoadMap.get(key); | public String toString() { String frameValues = super.toString(); if (RLE_DEBUG) { StringBuffer buf = new StringBuffer(); buf.append(frameValues); Iterator<Map.Entry<AvailableLoad, ValueNumber[]>> i = availableLoadMap.entrySet().iterator(); boolean first = true; while (i.hasNext()) { Map.Entry<AvailableLoad, ValueNumber[]> entry = i.next(); if (first) first = false; else buf.append(','); buf.append(entry.getKey() + "=" + valueToString(entry.getValue())); } return buf.toString(); } else { return frameValues; } } | 7352 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7352/da9fde93efd951d8b704faf9c38cac44d21ee590/ValueNumberFrame.java/clean/findbugs/src/java/edu/umd/cs/findbugs/ba/ValueNumberFrame.java | [
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dX2 += dYAxisLabelsThickness; dX1 -= Math.max( bTicksLeft ? TICK_SIZE : 0, | dX2 += Math.max( dYAxisLabelsThickness, dDecorationThickness[1] ); dX1 -= Math.max( ( bTicksLeft ? TICK_SIZE : 0 ) + dDecorationThickness[0], dAppliedYAxisPlotSpacing ); } else if ( iYLabelLocation == LEFT ) { dX1 -= Math.max( ( bTicksLeft ? TICK_SIZE : 0 ) + Math.max( dYAxisLabelsThickness, dDecorationThickness[0] ), | protected final double adjustHorizontal( double dBlockX, double dBlockWidth, AllAxes aax ) throws ChartException, IllegalArgumentException { final OneAxis axPH = aax.areAxesSwapped( ) ? aax.getPrimaryOrthogonal( ) : aax.getPrimaryBase( ); final OneAxis axPV = aax.areAxesSwapped( ) ? aax.getPrimaryBase( ) : aax.getPrimaryOrthogonal( ); final AutoScale scX = axPH.getScale( ); final AutoScale scY = axPV.getScale( ); final int iXLabelLocation = axPH.getLabelPosition( ); final int iYLabelLocation = axPV.getLabelPosition( ); final int iYTitleLocation = axPV.getTitlePosition( ); final Label laXAxisLabels = axPH.getLabel( ); final Label laYAxisLabels = axPV.getLabel( ); final Label laYAxisTitle = axPV.getTitle( ); final int iYTickStyle = axPV.getCombinedTickStyle( ); final IntersectionValue iv = axPV.getIntersectionValue( ); // COMPUTE THE THICKNESS OF THE AXIS INCLUDING AXIS LABEL BOUNDS AND // AXIS-PLOT SPACING final boolean bTicksLeft = ( iYTickStyle & TICK_LEFT ) == TICK_LEFT; final boolean bTicksRight = ( iYTickStyle & TICK_RIGHT ) == TICK_RIGHT; final double dAppliedYAxisPlotSpacing = ( iv.iType == IntersectionValue.MAX || iv.iType == IntersectionValue.MIN ) ? dYAxisPlotSpacing : 0; // UPDATE Y-AXIS ENDPOINTS DUE TO AXIS LABEL SHIFTS double dStart = scY.getStart( ), dEnd = scY.getEnd( ); scY.computeTicks( ids, laYAxisLabels, iYLabelLocation, VERTICAL, dStart, dEnd, true, aax ); if ( !scY.isStepFixed( ) ) { final Object[] oaMinMax = scY.getMinMax( ); while ( !scY.checkFit( ids, laYAxisLabels, iYLabelLocation ) ) { if ( !scY.zoomOut( ) ) { break; } scY.updateAxisMinMax( oaMinMax[0], oaMinMax[1] ); int tickCount = scY.computeTicks( ids, laYAxisLabels, iYLabelLocation, VERTICAL, dStart, dEnd, true, aax ); if ( scY.getUnit( ) != null && asInteger( scY.getUnit( ) ) == Calendar.YEAR && tickCount <= 3 ) { break; } } } double dYAxisLabelsThickness = scY.computeAxisLabelThickness( ids, axPV.getLabel( ), VERTICAL ); double dYAxisTitleThickness = 0; if ( laYAxisTitle.isVisible( ) ) { final String sPreviousValue = laYAxisTitle.getCaption( ).getValue( ); laYAxisTitle.getCaption( ) .setValue( rtc.externalizedMessage( sPreviousValue ) ); try { dYAxisTitleThickness = computeBox( ids, iYTitleLocation, laYAxisTitle, 0, 0 ).getWidth( ); } catch ( IllegalArgumentException uiex ) { throw new ChartException( ChartEnginePlugin.ID, ChartException.GENERATION, uiex ); } finally { laYAxisTitle.getCaption( ).setValue( sPreviousValue ); } } double dX = getLocation( scX, iv ), dX1 = dX, dX2 = dX; // COMPUTE VALUES FOR x1, x, x2 // x = HORIZONTAL LOCATION OF Y-AXIS ALONG PLOT // x1 = LEFT EDGE OF Y-AXIS BAND (DUE TO AXIS LABELS, TITLE, TICKS & // SPACING) // x2 = RIGHT EDGE OF Y-AXIS BAND (DUE TO AXIS LABELS, TITLE, TICKS & // SPACING) if ( iv.iType == IntersectionValue.MIN ) { if ( scX.getDirection( ) == BACKWARD ) { // switch if scale is backward. dX = getLocation( scX, IntersectionValue.MAX_VALUE ); } dX -= dAppliedYAxisPlotSpacing; dX1 = dX; dX2 = dX; if ( bTicksLeft ) { dX1 -= TICK_SIZE; } if ( iYLabelLocation == LEFT ) { dX1 -= dYAxisLabelsThickness; dX2 += Math.max( // IF LABELS ARE LEFT, THEN RIGHT SPACING IS // MAX(RT_TICK_SIZE, HORZ_SPACING) bTicksRight ? TICK_SIZE : 0, dAppliedYAxisPlotSpacing ); } else if ( iYLabelLocation == RIGHT ) { // IF LABELS ARE RIGHT, THEN RIGHT SPACING IS // MAX(RT_TICK_SIZE+AXIS_LBL_THCKNESS, HORZ_SPACING) dX2 += Math.max( ( bTicksRight ? TICK_SIZE : 0 ) + dYAxisLabelsThickness, dAppliedYAxisPlotSpacing ); } if ( iYTitleLocation == LEFT ) { dX1 -= dYAxisTitleThickness; } else if ( iYTitleLocation == RIGHT ) { dX2 += dYAxisTitleThickness; } // ENSURE THAT WE DON'T GO BEHIND THE LEFT PLOT BLOCK EDGE if ( dX1 < dBlockX ) { final double dDelta = ( dBlockX - dX1 ); dX1 = dBlockX; dX += dDelta; dX2 += dDelta; } final double dDeltaX1 = dX - dX1; final double dDeltaX2 = dX2 - dX; // COMPUTE THE Y-AXIS BAND THICKNESS AND ADJUST X2 FOR LABELS BELOW if ( iYLabelLocation == RIGHT ) { // Y-AXIS BAND IS (x1 -> (x+AxisPlotSpacing)) dX2 = ( dX + dAppliedYAxisPlotSpacing ); } dYAxisLabelsThickness = dX2 - dX1; // REUSE VARIABLE // CHECK IF X-AXIS THICKNESS REQUIRES A PLOT HEIGHT RESIZE AT THE // UPPER END scX.computeAxisStartEndShifts( ids, laXAxisLabels, HORIZONTAL, iXLabelLocation, aax ); boolean startEndChanged = false; if ( scX.getDirection( ) == BACKWARD ) { if ( dYAxisLabelsThickness > scX.getEndShift( ) ) { // REDUCE scX's STARTPOINT TO FIT THE Y-AXIS ON THE LEFT dEnd = dX2; startEndChanged = true; } else { dEnd = scX.getEnd( ); } dStart = scX.getStart( ); } else { if ( dYAxisLabelsThickness > scX.getStartShift( ) ) { // REDUCE scX's STARTPOINT TO FIT THE Y-AXIS ON THE LEFT dStart = dX2; startEndChanged = true; } else { dStart = scX.getStart( ); } dEnd = scX.getEnd( ); } scX.resetShifts( ); // LOOP THAT AUTO-RESIZES Y-AXIS AND RE-COMPUTES Y-AXIS LABELS // IF OVERLAPS OCCUR scX.setEndPoints( dStart, dEnd ); if ( scX.getDirection( ) == BACKWARD ) { scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, true, !startEndChanged, aax ); } else { scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, !startEndChanged, true, aax ); } if ( !scX.isStepFixed( ) ) { final Object[] oaMinMax = scX.getMinMax( ); while ( !scX.checkFit( ids, laXAxisLabels, iXLabelLocation ) ) { if ( !scX.zoomOut( ) ) { break; } scX.updateAxisMinMax( oaMinMax[0], oaMinMax[1] ); int tickCount; if ( scX.getDirection( ) == BACKWARD ) { tickCount = scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, true, !startEndChanged, aax ); } else { tickCount = scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, !startEndChanged, true, aax ); } if ( scX.getUnit( ) != null && asInteger( scX.getUnit( ) ) == Calendar.YEAR && tickCount <= 3 ) { break; } } } // MOVE THE Y-AXIS TO THE LEFT EDGE OF THE PLOT IF SLACK SPACE // EXISTS OR SCALE IS RECOMPUTED if ( scX.getDirection( ) == BACKWARD ) { if ( dYAxisLabelsThickness < scX.getEndShift( ) ) { dX = scX.getEnd( ) - ( dX2 - dX ); } } else { if ( dYAxisLabelsThickness < scX.getStartShift( ) ) { dX = scX.getStart( ) - ( dX2 - dX ); } } dX -= insCA.getLeft( ); dX2 = dX + dDeltaX2; dX1 = dX - dDeltaX1; axPV.setTitleCoordinate( ( iYTitleLocation == LEFT ) ? dX1 - 1 : dX2 + 1 - dYAxisTitleThickness ); } else if ( iv.iType == IntersectionValue.MAX ) { if ( scX.getDirection( ) == BACKWARD ) { // switch if scale is backward. dX = getLocation( scX, IntersectionValue.MIN_VALUE ); } dX += dAppliedYAxisPlotSpacing; dX1 = dX; dX2 = dX; if ( bTicksRight ) { dX2 += TICK_SIZE; } if ( iYLabelLocation == RIGHT ) { dX2 += dYAxisLabelsThickness; dX1 -= Math.max( bTicksLeft ? TICK_SIZE : 0, dAppliedYAxisPlotSpacing ); } else if ( iYLabelLocation == LEFT ) { dX1 -= Math.max( ( bTicksLeft ? TICK_SIZE : 0 ) + dYAxisLabelsThickness, dAppliedYAxisPlotSpacing ); } if ( iYTitleLocation == RIGHT ) { dX2 += dYAxisTitleThickness; } else if ( iYTitleLocation == LEFT ) { dX1 -= dYAxisTitleThickness; } // ENSURE THAT WE DON'T GO AHEAD OF THE RIGHT PLOT BLOCK EDGE if ( dX2 > dBlockX + dBlockWidth ) { final double dDelta = dX2 - ( dBlockX + dBlockWidth ); dX2 = dBlockX + dBlockWidth; dX -= dDelta; dX1 -= dDelta; } final double dDeltaX1 = dX - dX1; final double dDeltaX2 = dX2 - dX; // COMPUTE THE Y-AXIS BAND THICKNESS AND ADJUST X1 IF Y-AXIS LABELS // ARE ON THE LEFT if ( iYLabelLocation == LEFT ) { // Y-AXIS BAND IS ((x-AxisPlotSpacing) -> x2) dX1 = ( dX - dAppliedYAxisPlotSpacing ); } dYAxisLabelsThickness = dX2 - dX1; // REUSE VARIABLE // CHECK IF X-AXIS THICKNESS REQUIRES A PLOT HEIGHT RESIZE AT THE // UPPER END scX.computeAxisStartEndShifts( ids, laXAxisLabels, HORIZONTAL, iXLabelLocation, aax ); boolean startEndChanged = false; if ( scX.getDirection( ) == BACKWARD ) { if ( dYAxisLabelsThickness > scX.getStartShift( ) ) { // REDUCE scX's ENDPOINT TO FIT THE Y-AXIS ON THE RIGHT dStart = dX1; startEndChanged = true; } else { dStart = scX.getStart( ); } dEnd = scX.getEnd( ); } else { if ( dYAxisLabelsThickness > scX.getEndShift( ) ) { // REDUCE scX's ENDPOINT TO FIT THE Y-AXIS ON THE RIGHT dEnd = dX1; startEndChanged = true; } else { dEnd = scX.getEnd( ); } dStart = scX.getStart( ); } scX.resetShifts( ); // LOOP THAT AUTO-RESIZES Y-AXIS AND RE-COMPUTES Y-AXIS LABELS // IF OVERLAPS OCCUR scX.setEndPoints( dStart, dEnd ); if ( scX.getDirection( ) == BACKWARD ) { scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, !startEndChanged, true, aax ); } else { scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, true, !startEndChanged, aax ); } if ( !scX.isStepFixed( ) ) { final Object[] oaMinMax = scX.getMinMax( ); while ( !scX.checkFit( ids, laXAxisLabels, iXLabelLocation ) ) { if ( !scX.zoomOut( ) ) { break; } scX.updateAxisMinMax( oaMinMax[0], oaMinMax[1] ); int tickCount; if ( scX.getDirection( ) == BACKWARD ) { tickCount = scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, !startEndChanged, true, aax ); } else { tickCount = scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, true, !startEndChanged, aax ); } if ( scX.getUnit( ) != null && asInteger( scX.getUnit( ) ) == Calendar.YEAR && tickCount <= 3 ) { break; } } } // MOVE THE Y-AXIS TO THE LEFT EDGE OF THE PLOT IF SLACK SPACE // EXISTS OR SCALE IS RECOMPUTED if ( scX.getDirection( ) == BACKWARD ) { if ( dYAxisLabelsThickness < scX.getStartShift( ) ) { dX = scX.getStart( ) - ( dX1 - dX ); } } else { if ( dYAxisLabelsThickness < scX.getEndShift( ) ) { dX = scX.getEnd( ) - ( dX1 - dX ); } } dX += insCA.getRight( ); dX2 = dX + dDeltaX2; dX1 = dX - dDeltaX1; axPV.setTitleCoordinate( ( iYTitleLocation == LEFT ) ? dX1 - 1 : dX2 + 1 - dYAxisTitleThickness ); } else { double dDeltaX1 = 0, dDeltaX2 = 0; if ( iYTitleLocation == RIGHT ) { dX2 += dYAxisTitleThickness; } else if ( iYTitleLocation == LEFT ) { dX1 -= dYAxisTitleThickness; } if ( iYLabelLocation == LEFT ) { dX1 -= ( bTicksLeft ? TICK_SIZE : 0 ) + dYAxisLabelsThickness; dX2 += ( bTicksRight ? TICK_SIZE : 0 ); dDeltaX1 = dX - dX1; dDeltaX2 = dX2 - dX; // CHECK IF LEFT EDGE OF Y-AXIS BAND GOES BEHIND THE PLOT LEFT // EDGE if ( dX1 < dBlockX ) { final Object[] oaMinMax = scX.getMinMax( ); boolean bForceBreak = false; // A LOOP THAT ITERATIVELY ATTEMPTS TO ADJUST THE LEFT EDGE // OF THE Y-AXIS LABELS WITH THE LEFT EDGE OF THE PLOT // AND/OR // ENSURE THAT THE START POINT OF THE X-AXIS SCALE IS // SUITABLY POSITIONED do { // CANCEL OUT THE ENDPOINT LABEL SHIFT COMPUTATIONS FROM // THE X-AXIS scX.setEndPoints( scX.getStart( ) - scX.getStartShift( ), scX.getEnd( ) + scX.getEndShift( ) ); // RESTORE scX.resetShifts( ); // APPLY THE AXIS REDUCTION FORMULA W.R.T. X-AXIS // STARTPOINT double[] da = scX.getEndPoints( ); double dT_RI = dBlockX - dX1; // THRESHOLD - // REQUESTEDINTERSECTION if ( scX.getDirection( ) == BACKWARD ) { double dAMin_AMax = da[0] - da[1]; double dAMax_RI = Math.abs( da[0] - dX ); double dDelta = ( dT_RI / dAMax_RI ) * dAMin_AMax; dEnd = da[1] + dDelta; dStart = da[0]; if ( dEnd < dBlockX ) { dEnd = dBlockX; bForceBreak = true; } } else { double dAMin_AMax = da[1] - da[0]; double dAMax_RI = Math.abs( da[1] - dX ); double dDelta = ( dT_RI / dAMax_RI ) * dAMin_AMax; dStart = da[0] + dDelta; dEnd = da[1]; if ( dStart < dBlockX ) { dStart = dBlockX; bForceBreak = true; } } // LOOP THAT AUTO-RESIZES Y-AXIS AND RE-COMPUTES Y-AXIS // LABELS IF OVERLAPS OCCUR scX.setEndPoints( dStart, dEnd ); scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, true, aax ); while ( !scX.checkFit( ids, laXAxisLabels, iXLabelLocation ) ) { if ( !scX.zoomOut( ) ) { bForceBreak = true; break; } scX.updateAxisMinMax( oaMinMax[0], oaMinMax[1] ); int tickCount = scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, true, aax ); if ( scX.getUnit( ) != null && asInteger( scX.getUnit( ) ) == Calendar.YEAR && tickCount <= 3 ) { bForceBreak = true; break; } } dX = getLocation( scX, iv ); dX1 = dX - dDeltaX1; // RE-CALCULATE X-AXIS BAND LEFT // EDGE } while ( Math.abs( dX1 - dBlockX ) > 1 && !bForceBreak ); } else { // LOOP THAT AUTO-RESIZES Y-AXIS AND RE-COMPUTES Y-AXIS // LABELS IF OVERLAPS OCCUR dStart = scX.getStart( ); dEnd = scX.getEnd( ); scX.setEndPoints( dStart, dEnd ); scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, true, aax ); if ( !scX.isStepFixed( ) ) { final Object[] oaMinMax = scX.getMinMax( ); while ( !scX.checkFit( ids, laXAxisLabels, iXLabelLocation ) ) { if ( !scX.zoomOut( ) ) { break; } scX.updateAxisMinMax( oaMinMax[0], oaMinMax[1] ); int tickCount = scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, true, aax ); if ( scX.getUnit( ) != null && asInteger( scX.getUnit( ) ) == Calendar.YEAR && tickCount <= 3 ) { break; } } } dX = getLocation( scX, iv ); } dX1 = dX - dDeltaX1; dX2 = dX + dDeltaX2; } else if ( iYLabelLocation == RIGHT ) { dX2 += ( bTicksRight ? TICK_SIZE : 0 ) + dYAxisLabelsThickness; dX1 -= ( bTicksLeft ? TICK_SIZE : 0 ); dDeltaX1 = dX - dX1; dDeltaX2 = dX2 - dX; // CHECK IF RIGHT EDGE OF Y-AXIS BAND GOES BEHIND THE PLOT RIGHT // EDGE if ( dX2 > dBlockX + dBlockWidth ) { final Object[] oaMinMax = scX.getMinMax( ); boolean bForceBreak = false; // A LOOP THAT ITERATIVELY ATTEMPTS TO ADJUST THE RIGHT EDGE // OF THE Y-AXIS LABELS WITH THE RIGHT EDGE OF THE PLOT // AND/OR // ENSURE THAT THE START POINT OF THE X-AXIS SCALE IS // SUITABLY POSITIONED do { // CANCEL OUT THE ENDPOINT LABEL SHIFT COMPUTATIONS FROM // THE X-AXIS scX.setEndPoints( scX.getStart( ) - scX.getStartShift( ), scX.getEnd( ) + scX.getEndShift( ) ); // RESTORE scX.resetShifts( ); // APPLY THE AXIS REDUCTION FORMULA W.R.T. X-AXIS // ENDPOINT double[] da = scX.getEndPoints( ); double dT_RI = dX2 - ( dBlockX + dBlockWidth ); // THRESHOLD // - // REQUESTEDINTERSECTION if ( scX.getDirection( ) == BACKWARD ) { double dAMin_AMax = da[0] - da[1]; double dAMin_RI = Math.abs( dX - da[1] ); double dDelta = Math.abs( dT_RI / dAMin_RI ) * dAMin_AMax; dStart = da[0] - dDelta; dEnd = da[1]; if ( dStart > dBlockX + dBlockWidth ) { dStart = dBlockX + dBlockWidth; bForceBreak = true; } } else { double dAMin_AMax = da[1] - da[0]; double dAMin_RI = Math.abs( dX - da[0] ); double dDelta = ( dT_RI / dAMin_RI ) * dAMin_AMax; dEnd = da[1] - dDelta; dStart = da[0]; if ( dEnd > dBlockX + dBlockWidth ) { dEnd = dBlockX + dBlockWidth; bForceBreak = true; } } // LOOP THAT AUTO-RESIZES Y-AXIS AND RE-COMPUTES Y-AXIS // LABELS IF OVERLAPS OCCUR scX.setEndPoints( dStart, dEnd ); scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, true, aax ); if ( !scX.isStepFixed( ) ) { while ( !scX.checkFit( ids, laXAxisLabels, iXLabelLocation ) ) { if ( !scX.zoomOut( ) ) { bForceBreak = true; break; } scX.updateAxisMinMax( oaMinMax[0], oaMinMax[1] ); int tickCount = scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, true, aax ); if ( scX.getUnit( ) != null && asInteger( scX.getUnit( ) ) == Calendar.YEAR && tickCount <= 3 ) { bForceBreak = true; break; } } } dX = getLocation( scX, iv ); dX2 = dX + dDeltaX2; // RE-CALCULATE X-AXIS BAND // RIGHT // EDGE } while ( Math.abs( dX2 - ( dBlockX + dBlockWidth ) ) > 1 && !bForceBreak ); } else { // LOOP THAT AUTO-RESIZES Y-AXIS AND RE-COMPUTES Y-AXIS // LABELS IF OVERLAPS OCCUR dStart = scX.getStart( ); dEnd = scX.getEnd( ); scX.setEndPoints( dStart, dEnd ); scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, true, aax ); if ( !scX.isStepFixed( ) ) { final Object[] oaMinMax = scX.getMinMax( ); while ( !scX.checkFit( ids, laXAxisLabels, iXLabelLocation ) ) { if ( !scX.zoomOut( ) ) { break; } scX.updateAxisMinMax( oaMinMax[0], oaMinMax[1] ); int tickCount = scX.computeTicks( ids, laXAxisLabels, iXLabelLocation, HORIZONTAL, dStart, dEnd, true, aax ); if ( scX.getUnit( ) != null && asInteger( scX.getUnit( ) ) == Calendar.YEAR && tickCount <= 3 ) { break; } } } dX = getLocation( scX, iv ); } dX2 = dX + dDeltaX2; dX1 = dX - dDeltaX1; } axPV.setTitleCoordinate( ( iYTitleLocation == LEFT ) ? dX1 - 1 : dX2 + 1 - dYAxisTitleThickness ); } return dX; } | 5230 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5230/20bb7679d106e8105100c095c900612d5a37a46d/PlotWithAxes.java/clean/chart/org.eclipse.birt.chart.engine/src/org/eclipse/birt/chart/computation/withaxes/PlotWithAxes.java | [
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protected void setValuesOffered( Set values) throws IllegalValueException { | public void setValuesOffered( Set values) throws IllegalValueException { | protected void setValuesOffered( Set values) throws IllegalValueException { if (values == null) { throw new IllegalValueException("setValuesOffered must not be called with a null value. An empty set IS permitted."); } //Empty the valuesOffered set valuesOffered.clear(); Set newValuesOffered = new LinkedHashSet(values); Object o; Iterator i = newValuesOffered.iterator(); while (i.hasNext()) { o = i.next() ; if ( possibleValues.contains(o) ) { valuesOffered.add(o); } else { throw new IllegalValueException("The following value is not a permitted value: " + o.toString() ); } } } | 11869 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11869/a77e2e333b12df5bb2e6dc2d11645c4f19ccb4c4/Action.java/buggy/Coordinator/src/org/cougaar/coordinator/Action.java | [
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NativeJavaMethod setJavaMethod = (NativeJavaMethod) method; Method[] setMethods = setJavaMethod.methods; for (int pass = 1; pass <= 2 && setMethod == null; ++pass) { for (int i = 0; i < setMethods.length; ++i) { if (setMethods[i].getReturnType() == Void.TYPE && (!isStatic || Modifier.isStatic(setMethods[i].getModifiers())) && (params = setMethods[i].getParameterTypes()) != null && params.length == 1 ) { if ((pass == 1 && params[0] == type) || (pass == 2 && params[0].isAssignableFrom(type))) { setMethod = setMethods[i]; break; } } } } | NativeJavaMethod njm = (NativeJavaMethod) method; Class type = getMethod.getReturnType(); setMethod = extractSetMethod(type, njm, isStatic); | private void makeBeanProperties(Scriptable scope, boolean isStatic) { Hashtable ht = isStatic ? staticMembers : members; Hashtable toAdd = new Hashtable(); // Now, For each member, make "bean" properties. for (Enumeration e = ht.keys(); e.hasMoreElements(); ) { // Is this a getter? String name = (String) e.nextElement(); boolean memberIsGetMethod = name.startsWith("get"); boolean memberIsIsMethod = name.startsWith("is"); if (memberIsGetMethod || memberIsIsMethod) { // Double check name component. String nameComponent = name.substring(memberIsGetMethod ? 3 : 2); if (nameComponent.length() == 0) continue; // Make the bean property name. String beanPropertyName = nameComponent; if (Character.isUpperCase(nameComponent.charAt(0))) { if (nameComponent.length() == 1) { beanPropertyName = nameComponent.substring(0, 1).toLowerCase(); } else if (!Character.isUpperCase(nameComponent.charAt(1))) { beanPropertyName = Character.toLowerCase(nameComponent.charAt(0)) + nameComponent.substring(1); } } // If we already have a member by this name, don't do this // property. if (ht.containsKey(beanPropertyName)) continue; // Get the method by this name. Object method = ht.get(name); if (!(method instanceof NativeJavaMethod)) continue; NativeJavaMethod getJavaMethod = (NativeJavaMethod) method; // Grab and inspect the getter method; does it have an empty parameter list, // with a return value (eg. a getSomething() or isSomething())? Class[] params; Method[] getMethods = getJavaMethod.methods; Class type; if (getMethods != null && getMethods.length == 1 && (type = getMethods[0].getReturnType()) != null && (params = getMethods[0].getParameterTypes()) != null && params.length == 0) { // Make sure the method static-ness is preserved for this property. if (isStatic && !Modifier.isStatic(getMethods[0].getModifiers())) continue; // We have a getter. Now, do we have a setter? Method setMethod = null; String setter = "set" + nameComponent; if (ht.containsKey(setter)) { // Is this value a method? method = ht.get(setter); if (method instanceof NativeJavaMethod) { // // Note: it may be preferable to allow NativeJavaMethod.findFunction() // to find the appropriate setter; unfortunately, it requires an // instance of the target arg to determine that. // // Make two passes: one to find a method with direct type assignment, // and one to find a widening conversion. NativeJavaMethod setJavaMethod = (NativeJavaMethod) method; Method[] setMethods = setJavaMethod.methods; for (int pass = 1; pass <= 2 && setMethod == null; ++pass) { for (int i = 0; i < setMethods.length; ++i) { if (setMethods[i].getReturnType() == Void.TYPE && (!isStatic || Modifier.isStatic(setMethods[i].getModifiers())) && (params = setMethods[i].getParameterTypes()) != null && params.length == 1 ) { if ((pass == 1 && params[0] == type) || (pass == 2 && params[0].isAssignableFrom(type))) { setMethod = setMethods[i]; break; } } } } } } // Make the property. BeanProperty bp = new BeanProperty(getMethods[0], setMethod); toAdd.put(beanPropertyName, bp); } } } // Add the new bean properties. for (Enumeration e = toAdd.keys(); e.hasMoreElements();) { String key = (String) e.nextElement(); Object value = toAdd.get(key); ht.put(key, value); } } | 51275 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51275/32619aac8e91c998c877615fa497d1582f8f19a8/JavaMembers.java/buggy/js/rhino/src/org/mozilla/javascript/JavaMembers.java | [
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} catch (BadLocationException e1) { PydevPlugin.log(IStatus.ERROR, "Error setting selection", e1); | private void openInFile(IFile file, Location start, Location end) { if (file == null) return; IWorkbenchPage p = PydevPlugin.getDefault().getWorkbench().getActiveWorkbenchWindow().getActivePage(); try { IEditorPart editorPart= p.openEditor(file, null, true); if (start != null && editorPart instanceof ITextEditor) { ITextEditor textEdit = (ITextEditor)editorPart; showInEditor(textEdit, start, end); } } catch (PartInitException e) { PydevPlugin.log(IStatus.ERROR, "Unexpected error opening file", e); } catch (BadLocationException e1) { PydevPlugin.log(IStatus.ERROR, "Error setting selection", e1); } } | 1319 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1319/46f4537ccb62b764a878e75128abd84e94f9720a/PyOpenAction.java/clean/org.python.pydev/src/org/python/pydev/editor/actions/PyOpenAction.java | [
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FileOutputStream output = new FileOutputStream(target); output.write((CDX_HEADER_STRING + "\n").getBytes()); CDXRecord cdxRecord = new CDXRecord(); Iterator itr = results.iterator(); while (itr.hasNext()) { SearchResult result = (SearchResult) itr.next(); cdxRecord.fromSearchResult(result); output.write((cdxRecord.toValue() + "\n").getBytes()); | FileOutputStream os = new FileOutputStream(target); BufferedOutputStream bos = new BufferedOutputStream(os); PrintWriter pw = new PrintWriter(bos); try { pw.println(CDXRecord.CDX_HEADER_MAGIC); CDXRecord cdxRecord = new CDXRecord(); Iterator itr = results.iterator(); while (itr.hasNext()) { SearchResult result = (SearchResult) itr.next(); cdxRecord.fromSearchResult(result); pw.println(cdxRecord.toValue()); } } finally { pw.close(); | public void serializeResults(final SearchResults results, File target) throws IOException { // TODO will this automatically close when it falls out of scope? FileOutputStream output = new FileOutputStream(target); output.write((CDX_HEADER_STRING + "\n").getBytes()); CDXRecord cdxRecord = new CDXRecord(); Iterator itr = results.iterator(); while (itr.hasNext()) { SearchResult result = (SearchResult) itr.next(); cdxRecord.fromSearchResult(result); output.write((cdxRecord.toValue() + "\n").getBytes()); } } | 54068 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54068/5342cb99e2a0786cd1a044142fbf3a43cdd33dbe/ArcIndexer.java/clean/src/java/org/archive/wayback/cdx/indexer/ArcIndexer.java | [
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swmm.notifyListenersOfRemove(ne); ne.setComment(newComment); swmm.notifyListenersOfAdd(ne); | swmm.notifyListenersOfRemove(ne); ne.setComment(newComment); swmm.notifyListenersOfAdd(ne); | public void editComment() { FakeTreeNode ftn = (FakeTreeNode)getSelectionPath().getLastPathComponent(); NamedEdge ne = ftn.getEdge(); if(ne == null) { JOptionPane.showMessageDialog(this, "This is not an edge", "Cannot Edit Value", JOptionPane.ERROR_MESSAGE); } CommentDialog theDialog = new CommentDialog(MainFrame.getMainFrame(), ne.getComment() ); theDialog.setTitle("Enter Comment"); theDialog.setVisible(true); if (theDialog.wasApproved()) { String newComment = theDialog.getText(); swmm.notifyListenersOfRemove(ne); ne.setComment(newComment); swmm.notifyListenersOfAdd(ne); } } | 47007 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47007/d9311230f82f4404a6caf7a2cb902c26b0b86646/DataMapTree.java/clean/OldSoar/trunk/visualsoar/Source/edu/umich/visualsoar/datamap/DataMapTree.java | [
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is.close(); | public static void copyTo(Bucket decodedData, OutputStream os, long truncateLength) throws IOException { if(truncateLength == 0) return; if(truncateLength < 0) truncateLength = Long.MAX_VALUE; InputStream is = decodedData.getInputStream(); byte[] buf = new byte[4096]; long moved = 0; while(moved < truncateLength) { // DO NOT move the (int) inside the Math.min()! big numbers truncate to negative numbers. int bytes = (int) Math.min(buf.length, truncateLength - moved); if(bytes <= 0) throw new IllegalStateException("bytes="+bytes+", truncateLength="+truncateLength+", moved="+moved); bytes = is.read(buf, 0, bytes); if(bytes <= 0) { if(truncateLength == Long.MAX_VALUE) break; throw new IOException("Could not move required quantity of data: "+bytes); } os.write(buf, 0, bytes); moved += bytes; } is.close(); } | 56348 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56348/fbdde7654afdefd24ae4365520a38c1c680248a7/BucketTools.java/buggy/src/freenet/support/BucketTools.java | [
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elementParent.getContainingFile(), | containingFile, | protected void replace(ReplacementInfo _info) { final ReplacementInfoImpl info = (ReplacementInfoImpl)_info; final PsiElement element = (info.matchesPtrList.get(0)).getElement(); final String replacement = info.result; if (element==null || !element.isWritable() || !element.isValid()) return; final PsiElement elementParent = element.getParent(); CommandProcessor.getInstance().executeCommand( project, new Runnable() { public void run() { ApplicationManager.getApplication().runWriteAction( new Runnable() { public void run() { boolean listContext = false; try { PsiElement el = findRealSubstitutionElement(element); listContext = isListContext(el); final PsiElement[] statements = MatcherImplUtil.createTreeFromText( replacement, false, options.getMatchOptions().getFileType(), project ); if (context == null) context = new ReplacementContext(); if (listContext) { if (statements.length > 1) { elementParent.addRangeBefore(statements[0],statements[statements.length-1],element); } else if (statements.length==1) { PsiElement replacement = getMatchExpr(statements[0]); handleComments(el, replacement); handleModifierList(el, replacement, context); replacement = handleSymbolReplacemenent(replacement, el, context); if (replacement instanceof PsiTryStatement) { final List<PsiCodeBlock> unmatchedCatchBlocks = el.getUserData(MatcherImplUtil.UNMATCHED_CATCH_BLOCK_CONTENT_VAR_KEY); final List<PsiParameter> unmatchedCatchParams = el.getUserData(MatcherImplUtil.UNMATCHED_CATCH_PARAM_CONTENT_VAR_KEY); final PsiCatchSection catches[] = ((PsiTryStatement)replacement).getCatchSections(); if (unmatchedCatchBlocks!=null && unmatchedCatchParams!=null) { for(int i = unmatchedCatchBlocks.size()-1; i >= 0; --i) { final PsiParameter parameter = unmatchedCatchParams.get(i); final PsiCatchSection catchSection = PsiManager.getInstance(project).getElementFactory().createCatchSection( (PsiClassType)parameter.getType(), parameter.getName(), null ); catchSection.getCatchBlock().replace( unmatchedCatchBlocks.get(i) ); replacement.addAfter( catchSection, catches[catches.length-1] ); } } } elementParent.addBefore(replacement,element); } } else if (statements.length > 0) { int i = 0; while( true ) { if (!(statements[i] instanceof PsiComment || statements[i] instanceof PsiWhiteSpace ) ) break; ++i; } if (i != 0) { elementParent.addRangeBefore(statements[0],statements[i-1],el); } PsiElement replacement = getMatchExpr(statements[i]); if (replacement instanceof PsiStatement && !(replacement.getLastChild() instanceof PsiJavaToken) ) { // assert w/o ; elementParent.addRangeBefore(replacement.getFirstChild(),replacement.getLastChild().getPrevSibling(),el); el.delete(); } else { PsiDocComment comment = null; if (el instanceof PsiDocCommentOwner) { comment = ((PsiDocCommentOwner)el).getDocComment(); } // preserve comments handleComments(el, replacement); handleModifierList(el, replacement, context); if (comment!=null && replacement instanceof PsiDocCommentOwner) { replacement.addBefore( comment, replacement.getFirstChild() ); } if (replacement instanceof PsiClass) { // modifier list final PsiStatement[] searchStatements = context.getCodeBlock().getStatements(); if (searchStatements.length > 0 && searchStatements[0] instanceof PsiDeclarationStatement && ((PsiDeclarationStatement)searchStatements[0]).getDeclaredElements()[0] instanceof PsiClass ) { final PsiClass replaceClazz = (PsiClass)replacement; final PsiClass queryClazz = (PsiClass)((PsiDeclarationStatement)searchStatements[0]).getDeclaredElements()[0]; final PsiClass clazz = (PsiClass)el; if (replaceClazz.getExtendsList().getTextLength() == 0 && queryClazz.getExtendsList().getTextLength() == 0 && clazz.getExtendsList().getTextLength() != 0 ) { replaceClazz.getExtendsList().addRange( clazz.getExtendsList().getFirstChild(),clazz.getExtendsList().getLastChild() ); } if (replaceClazz.getImplementsList().getTextLength() == 0 && queryClazz.getImplementsList().getTextLength() == 0 && clazz.getImplementsList().getTextLength() != 0 ) { replaceClazz.getImplementsList().addRange( clazz.getImplementsList().getFirstChild(), clazz.getImplementsList().getLastChild() ); } if (replaceClazz.getTypeParameterList().getTextLength() == 0 && queryClazz.getTypeParameterList().getTextLength() == 0 && clazz.getTypeParameterList().getTextLength() != 0 ) { // skip < and > replaceClazz.getTypeParameterList().replace( clazz.getTypeParameterList() ); } } } replacement = handleSymbolReplacemenent(replacement, el, context); el.replace(replacement); } } else { el.delete(); } } catch(IncorrectOperationException ex) { ex.printStackTrace(); } if (listContext) { for(int i = 0;i < info.matchesPtrList.size();++i) { try { PsiElement element = findRealSubstitutionElement( (info.matchesPtrList.get(i)).getElement() ); element.delete(); //PsiElement firstToDelete = element; //PsiElement lastToDelete = element; //final PsiElement prevSibling = element.getPrevSibling(); // //if (prevSibling instanceof PsiWhiteSpace) { // firstToDelete = prevSibling; //} // //final PsiElement nextSibling = element.getNextSibling(); //if (nextSibling instanceof PsiWhiteSpace) { // lastToDelete = nextSibling; //} //element.getParent().deleteChildRange(firstToDelete,lastToDelete); } catch(IncorrectOperationException ex) { ex.printStackTrace(); } } } try { CodeStyleManager codeStyleManager = PsiManager.getInstance(project).getCodeStyleManager(); if (elementParent.getContainingFile()!=null) { if (options.isToShortenFQN()) { PsiDocumentManager.getInstance(project).commitDocument( FileDocumentManager.getInstance().getDocument(elementParent.getContainingFile().getVirtualFile()) ); codeStyleManager.shortenClassReferences( elementParent.getContainingFile(), elementParent.getTextOffset(), elementParent.getTextOffset() + elementParent.getTextLength() ); } if (options.isToReformatAccordingToStyle()) { if (elementParent.getContainingFile().getVirtualFile()!=null) { PsiDocumentManager.getInstance(project).commitDocument( FileDocumentManager.getInstance().getDocument(elementParent.getContainingFile().getVirtualFile()) ); } codeStyleManager.reformatRange( elementParent.getContainingFile(), elementParent.getTextOffset(), elementParent.getTextOffset() + elementParent.getTextLength(), true ); } } } catch(IncorrectOperationException ex) { ex.printStackTrace(); } } } ); PsiDocumentManager.getInstance(project).commitAllDocuments(); } }, "ssreplace", "test" ); } | 12814 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12814/af0a3613d2e75d4b1d05774d6dcfff87326bb682/ReplacerImpl.java/buggy/plugins/structuralsearch/source/com/intellij/structuralsearch/plugin/replace/impl/ReplacerImpl.java | [
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getCms().copyResource(getParamFile(), target, "true".equals(getParamKeeprights())); | getCms().copyResource(getParamFile(), target, "true".equals(getParamKeeprights()), true); | private boolean performCopyOperation() throws CmsException { // on folder copy display "please wait" screen, not for simple file copy CmsResource sourceRes = getCms().readFileHeader(getParamFile()); if (sourceRes.isFolder() && ! DIALOG_WAIT.equals(getParamAction())) { // return false, this will trigger the "please wait" screen return false; } // calculate the target name String target = getParamTarget(); if (target == null) target = ""; if (! target.startsWith("/")) { // target is not an absolute path, add the current parent folder target = CmsResource.getParent(getParamFile()) + target; } try { CmsResource res = getCms().readFileHeader(target); if (res.isFolder()) { // target folder already exists, so we add the current folder name if (! target.endsWith("/")) target += "/"; target = target + CmsResource.getName(getParamFile()); } } catch (CmsException e) { // target folder does not already exist, so target name is o.k. } // set the target parameter value setParamTarget(target); // delete existing target resource if confirmed by the user if (DIALOG_CONFIRMED.equals(getParamAction())) { getCms().deleteResource(target); } // copy the resource getCms().copyResource(getParamFile(), target, "true".equals(getParamKeeprights())); return true; } | 8585 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8585/97d901301797157fc45700e78fdba88051f665c3/CmsCopy.java/clean/src/org/opencms/workplace/CmsCopy.java | [
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return 1 + 1 + 1 + 2 + 2; case Token.REGEXP : return 1 + 2; case Icode_CLOSURE : return 1 + 2; case Token.NEW : case Token.CALL : return 1 + 2; | return 1 + 1 + 1 + 2; | private static int icodeTokenLength(int icodeToken) { switch (icodeToken) { case Icode_SCOPE : case Icode_GETPROTO : case Icode_PUSH_PARENT : case Icode_GETSCOPEPARENT : case Icode_SETPROTO : case Icode_SETPARENT : case Token.DELPROP : case Token.TYPEOF : case Token.ENTERWITH : case Token.LEAVEWITH : case Token.RETURN : case Token.RETURN_POPV : case Token.SETELEM : case Token.GETELEM : case Token.SETPROP : case Token.GETPROP : case Icode_PROPINC : case Icode_PROPDEC : case Icode_ELEMINC : case Icode_ELEMDEC : case Token.BITNOT : case Token.BITAND : case Token.BITOR : case Token.BITXOR : case Token.LSH : case Token.RSH : case Token.URSH : case Token.NOT : case Token.POS : case Token.NEG : case Token.SUB : case Token.MUL : case Token.DIV : case Token.MOD : case Token.ADD : case Token.POPV : case Token.POP : case Icode_DUP : case Icode_DUPSECOND : case Icode_SWAP : case Token.LT : case Token.GT : case Token.LE : case Token.GE : case Token.IN : case Token.INSTANCEOF : case Token.EQ : case Token.NE : case Token.SHEQ : case Token.SHNE : case Token.ZERO : case Token.ONE : case Token.NULL : case Token.THIS : case Token.THISFN : case Token.FALSE : case Token.TRUE : case Token.UNDEFINED : case Icode_CATCH: case Icode_RETUNDEF: case Icode_LITERAL_SET: case Token.STRING : case Token.NAME : case Token.SETNAME : case Icode_TYPEOFNAME : case Token.BINDNAME : case Icode_NAMEINC : case Icode_NAMEDEC : case Token.CATCH_SCOPE : return 1; case Token.THROW : // source line return 1 + 2; case Icode_GOSUB : case Token.GOTO : case Token.IFEQ : case Token.IFNE : case Icode_IFEQ_POP : // target pc offset return 1 + 2; case Icode_RETSUB : case Token.ENUM_INIT : case Token.ENUM_NEXT : case Token.ENUM_ID : case Icode_VARINC : case Icode_VARDEC : case Token.GETVAR : case Token.SETVAR : case Token.LOCAL_SAVE : case Token.LOCAL_LOAD : // slot index return 1 + 1; case Icode_CALLSPECIAL : // call type // is new // line number // arg count return 1 + 1 + 1 + 2 + 2; case Token.REGEXP : // regexp index return 1 + 2; case Icode_CLOSURE : // index of closure master copy return 1 + 2; case Token.NEW : case Token.CALL : // arg count return 1 + 2; case Icode_SHORTNUMBER : // short number return 1 + 2; case Icode_INTNUMBER : // int number return 1 + 4; case Token.NUMBER : // index of double number return 1 + 2; case Icode_LOAD_STR1: // ubyte string index return 1 + 1; case Icode_LOAD_STR2: // ushort string index return 1 + 2; case Icode_LOAD_STR4: // int string index return 1 + 4; case Icode_NAME_AND_THIS : // skipGetThis flag return 1 + 1; case Icode_LINE : // line number return 1 + 2; case Token.ARRAYLIT: // number of indexes and offset of skip array return 1 + 4 + 4; case Token.OBJECTLIT: // offset of property ids array return 1 + 4; case Icode_LITERAL_NEW: // number of literal values return 1 + 4; default: Kit.codeBug(); // Bad icodeToken return 0; } } | 11366 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11366/e88881f3a6bd2c7e5dc034fb562e82c4759ceacb/Interpreter.java/buggy/js/rhino/src/org/mozilla/javascript/Interpreter.java | [
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public Record findMatchInDB(Record record) throws RemoteException, DBLayerException { if(record == null) return null; // Get the table. Class table = record.getClass(); // Look in the cache.// if(cacheEnabled) {// Record cachedRecord = cache.remove(table);// if( cachedRecord != null && record.equals(cachedRecord))// return cachedRecord; // hooray, one select has been saved!// } // Create a query that will look for the record with the same properties. SelectQuery query = db.createQuery( table ); // Equal properties. for(String property : record.getProperties()) { Object value = record.getValue(property); // System.out.println(" + "+table.getSimpleName()+"."+property+"="+value); // String newValue = null;// try {// newValue = new String(value.toString().getBytes(), "UTF-8");// }catch(Exception e) {} if( value == null ) // use the database null /*query.addRestriction(RESTR_IS_NULL, property, null, null, null)*/; else query.addRestriction(RESTR_EQ, property, null, value, null); } // Equal foreign keys (by their ID's)! for(String key : record.getForeignKeys() ) { Record subrecord = (Record) record.getValue(key); query.addRestriction(RESTR_EQ, key, null, subrecord, null); } // Is there such record? int results = db.executeQuery( query ); int rows = db.getNumRows( results ); if( rows > 1 && !(record instanceof Habitat) ) logger.info("There are " + rows + " completely identical records in the " + table.getSimpleName() + " table!"); record = null; if( rows != 0 ) // ain't that beautiful! record = (Record)((Object[])(db.more(results, 0, 0)[0]))[0]; db.closeQuery( query ); // Update the cache appropriately - store the record for future generations.// if( record != null && cacheEnabled ) // cache.put(table, record); return record; } | 57211 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57211/4b03d285fdfd6a76458db40e687c06631401fb4c/DefaultDirector.java/clean/trunk/src/net/sf/plantlore/client/imports/DefaultDirector.java | [
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IEditorPart editors[] = page.getDirtyEditors(); for (int k = 0; k < editors.length; k++) { IEditorPart editor = editors[k]; if (editor.isSaveOnCloseNeeded()) { if (!dirtyEditorsInput.contains(editor .getEditorInput())) { dirtyParts.add(editor); dirtyEditorsInput.add(editor .getEditorInput()); } } } IViewPart[] viewParts = page.getDirtyViews(); for (int m=0; m<viewParts.length; m++) { IViewPart view = viewParts[m]; if (view instanceof ISaveablePart) { ISaveablePart saveable = (ISaveablePart)view; if (saveable.isSaveOnCloseNeeded()) { if (!dirtyParts.contains(saveable)) { dirtyParts.add(saveable); } } } } } | ISaveablePart[] parts = page.getDirtyParts(); for (int k = 0; k < parts.length; k++) { ISaveablePart part = parts[k]; if (part.isSaveOnCloseNeeded()) { if (part instanceof IEditorPart) { IEditorPart editor = (IEditorPart)part; if (!dirtyEditorsInput.contains(editor .getEditorInput())) { dirtyParts.add(editor); dirtyEditorsInput.add(editor .getEditorInput()); } } else { dirtyParts.add(part); } } } } | public boolean saveAllEditors(boolean confirm) { final boolean finalConfirm = confirm; final boolean[] result = new boolean[1]; result[0] = true; Platform.run(new SafeRunnable(WorkbenchMessages.ErrorClosing) { public void run() { // Collect dirtyParts ArrayList dirtyParts = new ArrayList(); ArrayList dirtyEditorsInput = new ArrayList(); IWorkbenchWindow windows[] = getWorkbenchWindows(); for (int i = 0; i < windows.length; i++) { IWorkbenchPage pages[] = windows[i].getPages(); for (int j = 0; j < pages.length; j++) { WorkbenchPage page = (WorkbenchPage) pages[j]; // add all editors to the list IEditorPart editors[] = page.getDirtyEditors(); for (int k = 0; k < editors.length; k++) { IEditorPart editor = editors[k]; if (editor.isSaveOnCloseNeeded()) { if (!dirtyEditorsInput.contains(editor .getEditorInput())) { dirtyParts.add(editor); dirtyEditorsInput.add(editor .getEditorInput()); } } } // add all the saveable views to the list IViewPart[] viewParts = page.getDirtyViews(); for (int m=0; m<viewParts.length; m++) { IViewPart view = viewParts[m]; if (view instanceof ISaveablePart) { ISaveablePart saveable = (ISaveablePart)view; if (saveable.isSaveOnCloseNeeded()) { if (!dirtyParts.contains(saveable)) { dirtyParts.add(saveable); } } } } } } if (dirtyParts.size() > 0) { IWorkbenchWindow w = getActiveWorkbenchWindow(); if (w == null) w = windows[0]; result[0] = EditorManager.saveAll(dirtyParts, finalConfirm, w); } } }); return result[0]; } | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/609ad53fd321be3a05929de62794a6e78e2c8455/Workbench.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/Workbench.java | [
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initNumberJcb(endCourseHourJcb, 8, 19); | initNumberJcb(endCourseHourJcb, FIRST_HOUR, LAST_HOUR); | private void initAddModifyCourseWindow() { teacherLabel = new JLabel("Le cours sera donn par :"); addComponent(AMCWLayout,layoutConstraints,teacherLabel,1,1,3,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(30,10,15,10)); AMCWFrame.getContentPane().add(teacherLabel); if (teachersName == null) teacherCourseJcb = new JComboBox(); else teacherCourseJcb = new JComboBox(teachersName); teacherPanel.setLayout(new BoxLayout(teacherPanel, BoxLayout.Y_AXIS)); teacherPanel.add(teacherCourseJcb); teacherPanel.add(Box.createVerticalStrut(5)); addComponent(AMCWLayout,layoutConstraints,teacherPanel,4,1,2,1,1.0,0.0,GridBagConstraints.CENTER,GridBagConstraints.HORIZONTAL,new Insets(20,10,15,10)); AMCWFrame.getContentPane().add(teacherPanel); teacherPlus = new JButton("+"); teacherPlus.addActionListener(new ButtonPlusListener(teacherPlusPanel, teacherPanel, AMCWFrame, teachersName)); teacherPlusPanel.setLayout(new BoxLayout(teacherPlusPanel, BoxLayout.Y_AXIS)); teacherPlusPanel.add(teacherPlus); teacherPlusPanel.add(Box.createVerticalStrut(5)); addComponent(AMCWLayout,layoutConstraints,teacherPlusPanel,6,1,GridBagConstraints.REMAINDER,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(20,10,15,10)); AMCWFrame.getContentPane().add(teacherPlusPanel); if (teachersName == null) { teacherLabel.setEnabled(false); teacherCourseJcb.setEnabled(false); teacherPlus.setEnabled(false); } dateCourseTheLabel = new JLabel("le"); addComponent(AMCWLayout,layoutConstraints,dateCourseTheLabel,1,2,1,1,0.0,0.0,GridBagConstraints.EAST,GridBagConstraints.NONE,new Insets(15,10,15,10)); AMCWFrame.getContentPane().add(dateCourseTheLabel); dateCourse = new JDateChooser(); addComponent(AMCWLayout,layoutConstraints,dateCourse,2,2,2,1,0.0,0.0,GridBagConstraints.CENTER,GridBagConstraints.NONE,new Insets(5,10,15,10)); AMCWFrame.getContentPane().add(dateCourse); dureeCourseDeLabel = new JLabel("de"); addComponent(AMCWLayout,layoutConstraints,dureeCourseDeLabel,1,3,1,1,0.0,0.0,GridBagConstraints.CENTER,GridBagConstraints.NONE,new Insets(15,10,15,10)); AMCWFrame.getContentPane().add(dureeCourseDeLabel); startCourseHourJcb = new JComboBox(); initNumberJcb(startCourseHourJcb, 8, 19); addComponent(AMCWLayout,layoutConstraints,startCourseHourJcb,2,3,1,1,0.0,0.0,GridBagConstraints.EAST,GridBagConstraints.NONE,new Insets(5,10,15,10)); AMCWFrame.getContentPane().add(startCourseHourJcb); startCourseHourLabel = new JLabel("heure"); addComponent(AMCWLayout,layoutConstraints,startCourseHourLabel,3,3,1,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(15,10,15,10)); AMCWFrame.getContentPane().add(startCourseHourLabel); dureeCourseALabel = new JLabel(""); addComponent(AMCWLayout,layoutConstraints,dureeCourseALabel,4,3,1,1,0.0,0.0,GridBagConstraints.EAST,GridBagConstraints.NONE,new Insets(15,10,15,10)); AMCWFrame.getContentPane().add(dureeCourseALabel); endCourseHourJcb = new JComboBox(); initNumberJcb(endCourseHourJcb, 8, 19); addComponent(AMCWLayout,layoutConstraints,endCourseHourJcb,5,3,GridBagConstraints.RELATIVE,1,0.0,0.0,GridBagConstraints.EAST,GridBagConstraints.NONE,new Insets(5,10,15,10)); AMCWFrame.getContentPane().add(endCourseHourJcb); endCourseHourLabel = new JLabel("heure"); addComponent(AMCWLayout,layoutConstraints,endCourseHourLabel,6,3,GridBagConstraints.REMAINDER,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(15,10,15,10)); AMCWFrame.getContentPane().add(endCourseHourLabel); startCourseMinuteJcb = new JComboBox(); initMinuteJcb(startCourseMinuteJcb); addComponent(AMCWLayout,layoutConstraints,startCourseMinuteJcb,2,4,1,1,0.0,0.0,GridBagConstraints.EAST,GridBagConstraints.NONE,new Insets(5,10,15,10)); AMCWFrame.getContentPane().add(startCourseMinuteJcb); startCourseMinuteLabel = new JLabel("min"); addComponent(AMCWLayout,layoutConstraints,startCourseMinuteLabel,3,4,1,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(15,10,15,10)); AMCWFrame.getContentPane().add(startCourseMinuteLabel); endCourseMinuteJcb = new JComboBox(); initMinuteJcb(endCourseMinuteJcb); addComponent(AMCWLayout,layoutConstraints,endCourseMinuteJcb,5,4,GridBagConstraints.RELATIVE,1,0.0,0.0,GridBagConstraints.EAST,GridBagConstraints.NONE,new Insets(5,10,15,10)); AMCWFrame.getContentPane().add(endCourseMinuteJcb); endCourseMinuteLabel = new JLabel("min"); addComponent(AMCWLayout,layoutConstraints,endCourseMinuteLabel,6,4,GridBagConstraints.REMAINDER,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(15,10,15,10)); AMCWFrame.getContentPane().add(endCourseMinuteLabel); placeCourseLabel = new JLabel("dans le local ou les locaux :"); addComponent(AMCWLayout,layoutConstraints,placeCourseLabel,1,5,3,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(15,10,15,10)); AMCWFrame.getContentPane().add(placeCourseLabel); if (roomsName == null) placeCourseJcb = new JComboBox(); else placeCourseJcb = new JComboBox(roomsName); placeCoursePanel.setLayout(new BoxLayout(placeCoursePanel, BoxLayout.Y_AXIS)); placeCoursePanel.add(placeCourseJcb); placeCoursePanel.add(Box.createVerticalStrut(5)); addComponent(AMCWLayout,layoutConstraints,placeCoursePanel,4,5,2,1,1.0,0.0,GridBagConstraints.CENTER,GridBagConstraints.HORIZONTAL,new Insets(5,10,15,10)); AMCWFrame.getContentPane().add(placeCoursePanel); placeCoursePlus = new JButton("+"); placeCoursePlus.addActionListener(new ButtonPlusListener(placeCoursePlusPanel, placeCoursePanel, AMCWFrame, roomsName)); placeCoursePlusPanel.setLayout(new BoxLayout(placeCoursePlusPanel, BoxLayout.Y_AXIS)); placeCoursePlusPanel.add(placeCoursePlus); placeCoursePlusPanel.add(Box.createVerticalStrut(5)); addComponent(AMCWLayout,layoutConstraints,placeCoursePlusPanel,6,5,GridBagConstraints.REMAINDER,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(5,10,15,10)); AMCWFrame.getContentPane().add(placeCoursePlusPanel); if (roomsName == null) { placeCourseLabel.setEnabled(false); placeCourseJcb.setEnabled(false); placeCoursePlus.setEnabled(false); } if (type == TYPE_ADD) { repeatCourseLabel = new JLabel("Sur combien de semaines se droulera le cours ?"); addComponent(AMCWLayout,layoutConstraints,repeatCourseLabel,1,6,5,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(15,10,15,10)); AMCWFrame.getContentPane().add(repeatCourseLabel); repeatCourseJcb = new JComboBox(); initNumberJcb(repeatCourseJcb, 1, 30); addComponent(AMCWLayout,layoutConstraints,repeatCourseJcb,6,6,GridBagConstraints.REMAINDER,1,0.0,0.0,GridBagConstraints.CENTER,GridBagConstraints.NONE,new Insets(5,10,15,10)); AMCWFrame.getContentPane().add(repeatCourseJcb); } courseEquipmentLabel = new JLabel("Le(s) matriel(s) utilis(s) :"); addComponent(AMCWLayout,layoutConstraints,courseEquipmentLabel,1,7,3,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(15,10,15,10)); AMCWFrame.getContentPane().add(courseEquipmentLabel); if (materialsName == null) courseEquipmentJcb = new JComboBox(); else courseEquipmentJcb = new JComboBox(materialsName); courseEquipmentPanel.setLayout(new BoxLayout(courseEquipmentPanel, BoxLayout.Y_AXIS)); courseEquipmentPanel.add(courseEquipmentJcb); courseEquipmentPanel.add(Box.createVerticalStrut(5)); addComponent(AMCWLayout,layoutConstraints,courseEquipmentPanel,4,7,2,1,1.0,0.0,GridBagConstraints.CENTER,GridBagConstraints.HORIZONTAL,new Insets(5,10,15,10)); AMCWFrame.getContentPane().add(courseEquipmentPanel); courseEquipmentPlus = new JButton("+"); courseEquipmentPlus.addActionListener(new ButtonPlusListener(courseEquipmentPlusPanel, courseEquipmentPanel, AMCWFrame, materialsName)); courseEquipmentPlusPanel.setLayout(new BoxLayout(courseEquipmentPlusPanel, BoxLayout.Y_AXIS)); courseEquipmentPlusPanel.add(courseEquipmentPlus); courseEquipmentPlusPanel.add(Box.createVerticalStrut(5)); addComponent(AMCWLayout,layoutConstraints,courseEquipmentPlusPanel,6,7,GridBagConstraints.REMAINDER,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(5,10,15,10)); AMCWFrame.getContentPane().add(courseEquipmentPlusPanel); if (materialsName == null) { courseEquipmentJcb.setEnabled(false); courseEquipmentLabel.setEnabled(false); courseEquipmentPlus.setEnabled(false); } courseFormationLabel = new JLabel("Le cours est attribu la formation :"); addComponent(AMCWLayout,layoutConstraints,courseFormationLabel,1,8,4,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(15,10,15,10)); AMCWFrame.getContentPane().add(courseFormationLabel); courseFormationJcb = new JComboBox(); addComponent(AMCWLayout,layoutConstraints,courseFormationJcb,5,8,GridBagConstraints.REMAINDER,1,1.0,0.0,GridBagConstraints.CENTER,GridBagConstraints.HORIZONTAL,new Insets(5,10,15,10)); AMCWFrame.getContentPane().add(courseFormationJcb); courseGroupLabel = new JLabel("et plus prcisment, au groupe :"); addComponent(AMCWLayout,layoutConstraints,courseGroupLabel,1,9,4,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(15,10,15,10)); AMCWFrame.getContentPane().add(courseGroupLabel); courseGroupJcb = new JComboBox(groupsName); addComponent(AMCWLayout,layoutConstraints,courseGroupJcb,5,9,GridBagConstraints.REMAINDER,1,1.0,0.0,GridBagConstraints.WEST,GridBagConstraints.HORIZONTAL,new Insets(5,10,15,10)); AMCWFrame.getContentPane().add(courseGroupJcb); typeCourseLabel = new JLabel("Choisissez le type de cours :"); addComponent(AMCWLayout,layoutConstraints,typeCourseLabel,1,10,3,1,0.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(15,10,0,10)); AMCWFrame.getContentPane().add(typeCourseLabel); magistral = new JRadioButton("Cours magistral",true); addComponent(AMCWLayout,layoutConstraints,magistral,1,11,2,1,1.0,0.0,GridBagConstraints.CENTER,GridBagConstraints.NONE,new Insets(5,10,20,10)); AMCWFrame.getContentPane().add(magistral); td = new JRadioButton("TD"); addComponent(AMCWLayout,layoutConstraints,td,3,11,1,1,1.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(5,10,20,10)); AMCWFrame.getContentPane().add(td); tp = new JRadioButton("TP"); addComponent(AMCWLayout,layoutConstraints,tp,4,11,GridBagConstraints.REMAINDER,1,1.0,0.0,GridBagConstraints.WEST,GridBagConstraints.NONE,new Insets(5,10,20,10)); AMCWFrame.getContentPane().add(tp); ButtonGroup buttonGroup = new ButtonGroup(); buttonGroup.add(magistral); buttonGroup.add(td); buttonGroup.add(tp); ok = new JButton("OK"); ok.addActionListener(new ActionOk()); addComponent(AMCWLayout,layoutConstraints,ok,5,12,GridBagConstraints.RELATIVE,1,0.0,0.0,GridBagConstraints.EAST,GridBagConstraints.NONE,new Insets(20,10,10,10)); AMCWFrame.getContentPane().add(ok); annuler = new JButton("Annuler"); annuler.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent arg0) { AMCWFrame.dispose(); } }); addComponent(AMCWLayout,layoutConstraints,annuler,6,12,GridBagConstraints.REMAINDER,1,0.0,0.0,GridBagConstraints.EAST,GridBagConstraints.NONE,new Insets(20,10,10,10)); AMCWFrame.getContentPane().add(annuler); } | 10961 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10961/e1d2fe1966aa19592744ffdc0b35eeacf24e65b3/AddModifyCourseWindow.java/clean/beontimeSwing/src/fr/umlv/smoreau/beontime/client/graphics/windows/AddModifyCourseWindow.java | [
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case WFSTATE_STEP1POOL: wi.setOwner( null ); | case WFSTATE_STEP1POOL: wi.setOwner( null ); | private static void doState(Context c,WorkflowItem wi, int newstate, EPerson newowner) throws SQLException, IOException, AuthorizeException { Collection mycollection = wi.getCollection(); Group mygroup = null; wi.setState(newstate); switch (newstate) { case WFSTATE_STEP1POOL: // any reviewers? // if so, add them to the tasklist wi.setOwner( null ); //wi.update(); // get reviewers (group 1 ) mygroup = mycollection.getWorkflowGroup( 1 ); if (mygroup != null ) { // there were reviewers, change the state // and add them to the list createTasks(c, wi, mygroup); wi.update(); // email notification notifyGroupOfTask(c, mygroup, wi); } else { // no reviewers, skip ahead doState(c, wi, WFSTATE_STEP2POOL, null); } break; case WFSTATE_STEP1: // remove reviewers from tasklist // assign owner deleteTasks(c, wi); wi.setOwner(newowner); break; case WFSTATE_STEP2POOL: // clear owner // any approvers? // if so, add them to tasklist // if not, skip to next state wi.setOwner( null ); // get approvers (group 2) mygroup = mycollection.getWorkflowGroup( 2 ); if( mygroup != null ) { // there were approvers, change the state // timestamp, and add them to the list createTasks(c, wi, mygroup ); // email notification notifyGroupOfTask(c, mygroup, wi); } else { // no reviewers, skip ahead doState(c, wi, WFSTATE_STEP3POOL, null); } break; case WFSTATE_STEP2: // remove admins from tasklist // assign owner deleteTasks(c, wi); wi.setOwner(newowner); break; case WFSTATE_STEP3POOL: // any editors? // if so, add them to tasklist wi.setOwner( null ); mygroup = mycollection.getWorkflowGroup( 3 ); if( mygroup != null ) { // there were editors, change the state // timestamp, and add them to the list createTasks(c, wi, mygroup); // email notification notifyGroupOfTask(c, mygroup, wi); } else { // no editors, skip ahead doState(c, wi, WFSTATE_ARCHIVE, newowner); } break; case WFSTATE_STEP3: // remove editors from tasklist // assign owner deleteTasks(c, wi); wi.setOwner(newowner); break; case WFSTATE_ARCHIVE: // put in archive in one transaction try { // remove workflow tasks deleteTasks(c, wi); mycollection = wi.getCollection(); Item myitem = archive(c, wi); // now email notification notifyOfArchive(c, myitem, mycollection); } catch(IOException e) { // indexer causes this throw e; } catch (SQLException e) { // problem starting workflow throw e; } break; } if (wi != null) wi.update(); } | 49711 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49711/9f3b39bf74c835ab4139c29391aef74922485f41/WorkflowManager.java/clean/dspace/src/org/dspace/workflow/WorkflowManager.java | [
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IWorkbenchAction action = new TipsAndTricksAction(window); action.setId(getId()); | RetargetAction action = new RetargetAction(getId(), IDEWorkbenchMessages.getString("Workbench.rebuildProject")); action.setToolTipText(IDEWorkbenchMessages.getString("Workbench.rebuildProjectToolTip")); window.getPartService().addPartListener(action); action.setActionDefinitionId("org.eclipse.ui.project.rebuildProject"); | public IWorkbenchAction create(IWorkbenchWindow window) { if (window == null) { throw new IllegalArgumentException(); } IWorkbenchAction action = new TipsAndTricksAction(window); action.setId(getId()); return action; } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/a28eb1ef10e772648cd789827e54d2e08b8df441/IDEActionFactory.java/buggy/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/ide/IDEActionFactory.java | [
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waitForActivationsToComplete(); | if (activationCount > 0) { long waitTime = CLOSE_TIMEOUT; while (activationCount > 0 && waitTime > 0) { waitTime = waitOnLock(mainLock, waitTime); } if (activationCount > 0) { log.warn("Timed out waiting for activations to complete"); } } | public void close() throws JMSException { try { synchronized (mainLock) { if (closed) { return; } closing = true; //We wait for any activation in progress to complete and the resulting message //(if any) to be returned and processed. //The ensures a clean, gracefully closure of the client side consumer, without //any messages in transit which might arrive after the consumer is closed and which //subsequently might be cancelled out of sequence causing message ordering problems waitForActivationsToComplete(); //Now we know there are no activations in progress but the consumer may still be active so we call //deactivate which returns the id of the last message we should have received //if we have received this message then we know there is no possibility of any message still in //transit and we can close down with confidence //otherwise we wait for this message and timeout if it doesn't arrive which might be the case //if the connection to the server has been lost //TODO Make configurable final int TIMEOUT = 20000; long lastMessageIDToExpect = deactivateConsumer(); if (lastMessageIDToExpect != -1) { long waitTime = TIMEOUT; while (lastMessageIDToExpect != lastMessageId && waitTime > 0) { waitTime = waitOnLock(mainLock, waitTime); } if (lastMessageIDToExpect != lastMessageId) { log.warn("Timed out waiting for last message to arrive, last=" + lastMessageId +" expected=" + lastMessageIDToExpect); } } //We set this even if we timed out waiting since we do not want any more to arrive now gotLastMessage = true; //Wake up any receive() thread that might be waiting mainLock.notify(); //Now make sure that any onMessage of a listener has finished executing long waitTime = TIMEOUT; synchronized (onMessageLock) { while (onMessageExecuting && waitTime > 0) { waitTime = waitOnLock(onMessageLock, waitTime); } if (onMessageExecuting) { //Timed out waiting for last onMessage to be processed log.warn("Timed out waiting for last onMessage to be executed"); } } //Now we know that all messages have been received and processed if (!buffer.isEmpty()) { //Now we cancel any deliveries that might be waiting in our buffer Iterator iter = buffer.iterator(); List ids = new ArrayList(); while (iter.hasNext()) { MessageProxy mp = (MessageProxy)iter.next(); ids.add(new Long(mp.getMessage().getMessageID())); } cancelDeliveries(ids); } //Now we are done listener = null; receiverThread = null; closed = true; } } catch (InterruptedException e) { //No one should be interrupting the thread so this shouldn't occur throw new IllegalStateException("Thread interrupted while closing consumer"); } } | 3806 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3806/07e374de7de6b7e5b2cc24cb9721dda2c85d257e/MessageCallbackHandler.java/buggy/src/main/org/jboss/jms/client/remoting/MessageCallbackHandler.java | [
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} | private void invalidateSelectedLines() { // to hide line highlight if selections are being added later on invalidateLine(caretLine); Iterator iter = selectionManager.selection.iterator(); while(iter.hasNext()) { Selection s = (Selection)iter.next(); invalidateLineRange(s.startLine,s.endLine); } } //}}} | 6564 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6564/01e43a44f5f0b2f213c816f23cccf5cfebee33e7/JEditTextArea.java/clean/org/gjt/sp/jedit/textarea/JEditTextArea.java | [
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protected IStatus run(IProgressMonitor monitor) { HashSet disabledPlugins = new HashSet(Arrays .asList(getDisabledEarlyActivatedPlugins())); monitor.beginTask(WorkbenchMessages.Workbench_startingPlugins, extensions.length); for (int i = 0; i < extensions.length; ++i) { if (monitor.isCanceled() || !isRunning()) { return Status.CANCEL_STATUS; } IExtension extension = extensions[i]; if (!disabledPlugins.contains(extension.getNamespace())) { monitor.subTask(extension.getNamespace()); Platform.run(new EarlyStartupRunnable(extension)); } monitor.worked(1); | public void run() { try { result[0] = busyOpenWorkbenchWindow(perspID, input); } catch (WorkbenchException e) { result[0] = e; | protected IStatus run(IProgressMonitor monitor) { HashSet disabledPlugins = new HashSet(Arrays .asList(getDisabledEarlyActivatedPlugins())); monitor.beginTask(WorkbenchMessages.Workbench_startingPlugins, extensions.length); for (int i = 0; i < extensions.length; ++i) { if (monitor.isCanceled() || !isRunning()) { return Status.CANCEL_STATUS; } IExtension extension = extensions[i]; // if the plugin is not in the set of disabled plugins, then // execute the code to start it if (!disabledPlugins.contains(extension.getNamespace())) { monitor.subTask(extension.getNamespace()); Platform.run(new EarlyStartupRunnable(extension)); } monitor.worked(1); } monitor.done(); return Status.OK_STATUS; } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/bc508e6d12aaf5e44777fe0ae256945be5760cc6/Workbench.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/Workbench.java | [
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public Calendar getStart() { return start; | public long getStart() { return startMili; | public Calendar getStart() { return start; } | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/57b925d86fd44a7384ad1e5ec70ce829303127f5/DateRangeActivityDelegate.java/clean/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/provisional/tasklist/DateRangeActivityDelegate.java | [
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suite.addTestSuite(TestMemberToGroup.class); | static public Test suite() { TestSuite suite = new TestSuite(); suite.addTest( SuiteSettings.suite() ); suite.addTest( SuiteSessions.suite() ); suite.addTest( SuiteStems.suite() ); suite.addTest( SuiteGroupTypes.suite() ); suite.addTest( SuiteGroups.suite() ); suite.addTest( SuiteComposites.suite() ); suite.addTest( SuiteSubjects.suite() ); suite.addTest( SuiteQueries.suite() ); suite.addTestSuite(TestBugsClosed.class); suite.addTestSuite(TestBugsOpen.class); suite.addTestSuite(TestAccessPrivilege.class); suite.addTestSuite(TestField.class); suite.addTestSuite(TestGrFiFindByName.class); suite.addTestSuite(TestGrFiFindByUuid.class); suite.addTestSuite(TestGroup.class); suite.addTestSuite(TestGroupAddMemberGroup.class); suite.addTestSuite(TestGroupDeleteMember.class); suite.addTestSuite(TestGroupToMember.class); suite.addTestSuite(TestMember.class); suite.addTestSuite(TestMemberFinder.class); suite.addTestSuite(TestMemberToGroup.class); suite.addTestSuite(TestMemberOf.class); // TODO suite.addTestSuite(TestMemberOfAccessPrivs.class); // TODO suite.addTestSuite(TestMemberOfNamingPrivs.class); suite.addTestSuite(TestMembership.class); suite.addTestSuite(TestNamingPrivilege.class); suite.addTestSuite(TestPrivADMIN.class); // TODO group-with-priv checks suite.addTestSuite(TestPrivCREATE.class); suite.addTestSuite(TestPrivOPTIN.class); // TODO group-with-priv checks suite.addTestSuite(TestPrivOPTOUT.class); // TODO group-with-priv checks suite.addTestSuite(TestPrivREAD.class); // TODO group-with-priv checks suite.addTestSuite(TestPrivSTEM.class); // TODO group-with-priv checks suite.addTestSuite(TestPrivVIEW.class); // TODO group-with-priv checks suite.addTestSuite(TestPrivUPDATE.class); // TODO group-with-priv checks suite.addTestSuite(TestStemAddChildGroup.class); suite.addTestSuite(TestStemAddChildStem.class); suite.addTestSuite(TestStemFinder.class); suite.addTestSuite(TestWrongFieldType.class); // TODO suite.addTestSuite(TestWheelGroup.class); return suite; } // static public Test suite() | 5235 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5235/637cddc4a27c766f2329ba025d3076af682d9e37/SuiteDefault.java/buggy/grouper/src/test/edu/internet2/middleware/grouper/SuiteDefault.java | [
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if (i.nextIndex() > index2) | GapContentPosition p = (GapContentPosition) i.next(); if (p.mark > endOffset) | protected Vector getPositionsInRange(Vector v, int offset, int length) { Vector res = v; if (res == null) res = new Vector(); else res.clear(); int endOffset = offset + length; int index1 = Collections.binarySearch(positions, new GapContentPosition(offset)); int index2 = Collections.binarySearch(positions, new GapContentPosition(endOffset)); if (index1 < 0) index1 = -(index1 + 1); if (index2 < 0) index2 = -(index2 + 1); for (ListIterator i = positions.listIterator(index1); i.hasNext();) { if (i.nextIndex() > index2) break; GapContentPosition p = (GapContentPosition) i.next(); if (p.mark >= offset && p.mark <= endOffset) res.add(p); } return res; } | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/ae9ec43c5570a0f69e3d8c8b733283719f52a770/GapContent.java/buggy/core/src/classpath/javax/javax/swing/text/GapContent.java | [
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retEnv = SunRound2Client.sendMsg(util, url, soapAction); | retEnv = client.sendMsg(util, url, soapAction); | public void testR2BaseEchoStringArray() throws AxisFault { url = "http://www.caraveo.com/soap_interop/server_round2.php"; soapAction = "http://soapinterop.org/"; util = new Round2EchoStringArrayClientUtil(); retEnv = SunRound2Client.sendMsg(util, url, soapAction); tempPath = resFilePath + "SunBaseStringArrayRes.xml"; compareXML(retEnv, tempPath); } | 49300 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49300/95f09abc768fee06d65b12836e31273ac0e15eb3/PSRound2InteropTest.java/buggy/modules/integration/itest/test/interop/whitemesa/round2/PSRound2InteropTest.java | [
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if (useRedraw) tree.setRedraw(true); | if (useRedraw) { tree.setRedraw(true); } | protected void inputChanged(Object input, Object oldInput) { preservingSelection(new Runnable() { public void run() { Control tree = getControl(); boolean useRedraw = true; // (size > REDRAW_THRESHOLD) || (table.getItemCount() > // REDRAW_THRESHOLD); if (useRedraw) tree.setRedraw(false); removeAll(tree); tree.setData(getRoot()); createChildren(tree); internalExpandToLevel(tree, expandToLevel); if (useRedraw) tree.setRedraw(true); } }); } | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/391f2606b4ea2c1fb5052d938ca90877ee7631f6/AbstractTreeViewer.java/clean/bundles/org.eclipse.jface/src/org/eclipse/jface/viewers/AbstractTreeViewer.java | [
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public void mSTRING() throws RecognitionException { int STRING_StartIndex = input.index(); try { int type = STRING; int start = getCharIndex(); int line = getLine(); int charPosition = getCharPositionInLine(); int channel = Token.DEFAULT_CHANNEL; if ( backtracking>0 && alreadyParsedRule(input, 49) ) { return ; } // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:948:17: ( ( '"' ( options {greedy=false; } : . )* '"' ) | ( '\'' ( options {greedy=false; } : . )* '\'' ) ) int alt10=2; int LA10_0 = input.LA(1); if ( LA10_0=='"' ) { alt10=1; } else if ( LA10_0=='\'' ) { alt10=2; } else { if (backtracking>0) {failed=true; return ;} NoViableAltException nvae = new NoViableAltException("947:1: STRING : ( ( \'\"\' ( options {greedy=false; } : . )* \'\"\' ) | ( \'\\\'\' ( options {greedy=false; } : . )* \'\\\'\' ) );", 10, 0, input); throw nvae; } switch (alt10) { case 1 : // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:948:17: ( '"' ( options {greedy=false; } : . )* '"' ) { // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:948:17: ( '"' ( options {greedy=false; } : . )* '"' ) // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:948:18: '"' ( options {greedy=false; } : . )* '"' { match('"'); if (failed) return ; // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:948:22: ( options {greedy=false; } : . )* loop8: do { int alt8=2; int LA8_0 = input.LA(1); if ( LA8_0=='"' ) { alt8=2; } else if ( (LA8_0>='\u0000' && LA8_0<='!')||(LA8_0>='#' && LA8_0<='\uFFFE') ) { alt8=1; } switch (alt8) { case 1 : // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:948:49: . { matchAny(); if (failed) return ; } break; default : break loop8; } } while (true); match('"'); if (failed) return ; } } break; case 2 : // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:948:61: ( '\'' ( options {greedy=false; } : . )* '\'' ) { // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:948:61: ( '\'' ( options {greedy=false; } : . )* '\'' ) // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:948:62: '\'' ( options {greedy=false; } : . )* '\'' { match('\''); if (failed) return ; // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:948:67: ( options {greedy=false; } : . )* loop9: do { int alt9=2; int LA9_0 = input.LA(1); if ( LA9_0=='\'' ) { alt9=2; } else if ( (LA9_0>='\u0000' && LA9_0<='&')||(LA9_0>='(' && LA9_0<='\uFFFE') ) { alt9=1; } switch (alt9) { case 1 : // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:948:94: . { matchAny(); if (failed) return ; } break; default : break loop9; } } while (true); match('\''); if (failed) return ; } } break; } if ( token==null ) {emit(type,line,charPosition,channel,start,getCharIndex()-1);} } finally { if ( backtracking>0 ) { memoize(input, 49, STRING_StartIndex); } } } | 31577 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/31577/35c3932466a0269c296ae52afa8a1f8048a309d2/RuleParserLexer.java/buggy/drools-compiler/src/main/java/org/drools/lang/RuleParserLexer.java | [
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{ aelfred2.setLocale (locale); } | { aelfred2.setLocale(locale); } | public void setLocale (Locale locale) throws SAXException { aelfred2.setLocale (locale); } | 1739 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1739/7fb7568e63c3fe14af521de4699cb37898923ca7/XmlReader.java/buggy/libjava/gnu/xml/aelfred2/XmlReader.java | [
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if (isPreciseTarget) { this.isPreciseTarget = isPreciseTarget; } else { setPreciseTarget(); } | setPreciseTarget(); | public void refine(VM_Method target, boolean isPreciseTarget) { this.target = target; if (isPreciseTarget) { this.isPreciseTarget = isPreciseTarget; } else { setPreciseTarget(); } } | 49871 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49871/3a9aeeb7f964774e6adc285d6526603ac1570e14/OPT_MethodOperand.java/buggy/rvm/src/vm/compilers/optimizing/ir/instruction/operand/OPT_MethodOperand.java | [
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private void __builtin_unsigned_long_long() { //unsigned long long ICASTSimpleDeclSpecifier parmSds = new CASTSimpleDeclSpecifier(); parmSds.setType(IASTSimpleDeclSpecifier.t_unspecified); parmSds.setUnsigned(true); parmSds.setLongLong(true); IType c_unsigned_long_long = new CQualifierType(parmSds); IType cpp_unsigned_long_long = new GPPBasicType(IBasicType.t_unspecified, CPPBasicType.IS_UNSIGNED & GPPBasicType.IS_LONGLONG, null); //int __builtin_ffsll(unsigned long long x) IBinding temp = null; IFunctionType functionType = null; IParameter[] theParms = new IParameter[1]; if (lang == ParserLanguage.C) { ICASTSimpleDeclSpecifier sds = new CASTSimpleDeclSpecifier(); sds.setType(IASTSimpleDeclSpecifier.t_int); IType returnType = new CBasicType(sds); IType[] parms = new IType[1]; parms[0] = c_unsigned_long_long; functionType = new CFunctionType(returnType, parms); theParms[0] = new CBuiltinParameter(parms[0]); temp = new CImplicitFunction(__BUILTIN_FFSLL, scope, functionType, theParms, false); } else { IType returnType = new CPPBasicType( IBasicType.t_int, 0 ); IType[] parms = new IType[1]; parms[0] = cpp_unsigned_long_long; functionType = new CPPFunctionType(returnType, parms); theParms[0] = new CPPBuiltinParameter(parms[0]); temp = new CPPImplicitFunction(__BUILTIN_FFSLL, scope, functionType, theParms, false); } bindings = (IBinding[])ArrayUtil.append(IBinding.class, bindings, temp); //int __builtin_clzll(unsigned long long x) temp = null; if (lang == ParserLanguage.C) { temp = new CImplicitFunction(__BUILTIN_CLZLL, scope, functionType, theParms, false); } else { temp = new CPPImplicitFunction(__BUILTIN_CLZLL, scope, functionType, theParms, false); } bindings = (IBinding[])ArrayUtil.append(IBinding.class, bindings, temp); //int __builtin_ctzll(unsigned long long x) temp = null; if (lang == ParserLanguage.C) { temp = new CImplicitFunction(__BUILTIN_CTZLL, scope, functionType, theParms, false); } else { temp = new CPPImplicitFunction(__BUILTIN_CTZLL, scope, functionType, theParms, false); } bindings = (IBinding[])ArrayUtil.append(IBinding.class, bindings, temp); //int __builtin_popcountll(unsigned long long x) temp = null; if (lang == ParserLanguage.C) { temp = new CImplicitFunction(__BUILTIN_POPCOUNTLL, scope, functionType, theParms, false); } else { temp = new CPPImplicitFunction(__BUILTIN_POPCOUNTLL, scope, functionType, theParms, false); } bindings = (IBinding[])ArrayUtil.append(IBinding.class, bindings, temp); //int __builtin_parityll(unsigned long long x) temp = null; if (lang == ParserLanguage.C) { temp = new CImplicitFunction(__BUILTIN_PARITYLL, scope, functionType, theParms, false); } else { temp = new CPPImplicitFunction(__BUILTIN_PARITYLL, scope, functionType, theParms, false); } bindings = (IBinding[])ArrayUtil.append(IBinding.class, bindings, temp); } | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/e5e342776ddb4235e342044729523a01bf8c688b/GCCBuiltinSymbolProvider.java/clean/core/org.eclipse.cdt.core/parser/org/eclipse/cdt/internal/core/dom/parser/GCCBuiltinSymbolProvider.java | [
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Event e = new Event("Powerbook Tilt"); | Event e = new Event("Powerbook_Tilt"); | public static void main(String argv[]){ if(argv.length != 1){ System.out.println("Usage: java amsProxy eventHeapServerName"); System.exit(-1); } EventHeap eh = new EventHeap(argv[0]); char[] buffer = new char[100]; BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); try{ System.out.println(in.readLine()); while( true ){ int numBytes = in.read(buffer, 0, DATA_LENGTH); if(numBytes > 0){ Event e = new Event("Powerbook Tilt"); String data = new String(buffer); System.out.println(data); System.out.flush(); // the first 4 bytes indicate x orientation String x = data.substring(0, 4); //System.out.println("x:" + x.trim()); // the next 5 for y String y = data.substring(4, 9); //System.out.println("y:" + y.trim()); // and the last 5 for z String z = data.substring(9, 14); //System.out.println("z:" + z.trim()); e.addField("X", new Integer(x.trim())); e.addField("Y", new Integer(y.trim())); e.addField("Z", new Integer(z.trim())); eh.putEvent(e); // skip the backspaces numBytes = in.read(buffer, 0, 14); } else{ Thread.sleep(0); } } } catch(Exception ex){ ex.printStackTrace(); } } | 12155 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12155/f9c1fe3e711ba451e154e01c89c79cbb613a606e/amsProxy.java/buggy/trunk/Hardware Proxies/PowerbookTiltSensor/amsProxy.java | [
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windowBodyDivCssStyle.setAttribute("height", "expression((document.getElementById('" + elementId + "').clientHeight-" + (top + bottom) + ")+'px')"); windowBodyDivCssStyle.setAttribute("width", "expression((document.getElementById('" + elementId + "').clientWidth-" + (left + right) + ")+'px')"); | windowBodyDivCssStyle.setAttribute("height", "expression((document.getElementById('" + elementId + "').clientHeight-" + (top + bottom) + ")+'px')"); windowBodyDivCssStyle.setAttribute("width", "expression((document.getElementById('" + elementId + "').clientWidth-" + (left + right) + ")+'px')"); | public void renderHtml(RenderContext rc, ServerComponentUpdate update, Element parentElement, Component component) { WindowPane windowPane = (WindowPane) component; String elementId = ContainerInstance.getElementId(windowPane); String bodyElementId = elementId + "_body"; String title = (String) windowPane.getRenderProperty(WindowPane.PROPERTY_TITLE); Extent width = (Extent) windowPane.getRenderProperty(WindowPane.PROPERTY_WIDTH); Extent height = (Extent) windowPane.getRenderProperty(WindowPane.PROPERTY_HEIGHT); int titleHeightPixels = ExtentRender.toPixels( (Extent) windowPane.getRenderProperty(WindowPane.PROPERTY_TITLE_HEIGHT), 28); boolean movable = ((Boolean) windowPane.getRenderProperty(WindowPane.PROPERTY_MOVABLE, Boolean.TRUE)).booleanValue(); boolean renderPositioningBothSides = !rc.getContainerInstance().getClientProperties() .getBoolean(ClientProperties.QUIRK_CSS_POSITIONING_ONE_SIDE_ONLY); boolean renderSizeExpression = !renderPositioningBothSides && rc.getContainerInstance().getClientProperties() .getBoolean(ClientProperties.PROPRIETARY_IE_CSS_EXPRESSIONS_SUPPORTED); ServerMessage serverMessage = rc.getServerMessage(); serverMessage.addLibrary(WINDOW_PANE_SERVICE.getId(), true); Document document = serverMessage.getDocument(); Element windowDivElement = document.createElement("div"); windowDivElement.setAttribute("id", elementId); // Create main window DIV element. 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Element windowBodyDivElement = document.createElement("div"); windowBodyDivElement.setAttribute("id", bodyElementId); CssStyle windowBodyDivCssStyle = new CssStyle(); ColorRender.renderToStyle(windowBodyDivCssStyle, (Color) windowPane.getRenderProperty(WindowPane.PROPERTY_FOREGROUND), (Color) windowPane.getRenderProperty(WindowPane.PROPERTY_BACKGROUND)); FontRender.renderToStyle(windowBodyDivCssStyle, (Font) windowPane.getRenderProperty(WindowPane.PROPERTY_FONT)); if (windowBodyDivCssStyle.getAttribute("background-color") == null) { windowBodyDivCssStyle.setAttribute("background-color", "white"); } windowBodyDivCssStyle.setAttribute("position", "absolute"); windowBodyDivCssStyle.setAttribute("z-index", "2"); FillImageBorder border = (FillImageBorder) windowPane.getRenderProperty(WindowPane.PROPERTY_BORDER, DEFAULT_BORDER); Insets contentInsets = border.getContentInsets() == null ? new Insets(0) : border.getContentInsets(); int left = ExtentRender.toPixels(contentInsets.getLeft(), 0); int right = ExtentRender.toPixels(contentInsets.getRight(), 0); int top = ExtentRender.toPixels(contentInsets.getTop(), 0); int bottom = ExtentRender.toPixels(contentInsets.getBottom(), 0); windowBodyDivCssStyle.setAttribute("top", top + "px"); windowBodyDivCssStyle.setAttribute("left", left + "px"); if (renderPositioningBothSides) { windowBodyDivCssStyle.setAttribute("bottom", bottom + "px"); windowBodyDivCssStyle.setAttribute("right", right + "px"); } else if (renderSizeExpression) { windowBodyDivCssStyle.setAttribute("height", "expression((document.getElementById('" + elementId + "').clientHeight-" + (top + bottom) + ")+'px')"); windowBodyDivCssStyle.setAttribute("width", "expression((document.getElementById('" + elementId + "').clientWidth-" + (left + right) + ")+'px')"); } windowBodyDivElement.setAttribute("style", windowBodyDivCssStyle.renderInline()); windowDivElement.appendChild(windowBodyDivElement); // Create Internet Explorer Select Element blocking IFRAME. if (rc.getContainerInstance().getClientProperties().getBoolean(ClientProperties.QUIRK_IE_SELECT_Z_INDEX)) { Element iframeQuirkDivElement = document.createElement("div"); // Resuse/modify windowBodyDivCssStyle. windowBodyDivCssStyle.setAttribute("z-index", "1"); iframeQuirkDivElement.setAttribute("style", windowBodyDivCssStyle.renderInline()); windowDivElement.appendChild(iframeQuirkDivElement); Element iframeQuirkIframeElement = document.createElement("iframe"); iframeQuirkIframeElement.setAttribute("width", "100%"); iframeQuirkIframeElement.setAttribute("height", "100%"); iframeQuirkDivElement.appendChild(iframeQuirkIframeElement); } // Create outer title DIV element. Element outerTitleDivElement = document.createElement("div"); outerTitleDivElement.setAttribute("id", elementId + "_title"); CssStyle outerTitleDivCssStyle = new CssStyle(); if (movable) { outerTitleDivCssStyle.setAttribute("cursor", "move"); } ColorRender.renderToStyle(outerTitleDivCssStyle, (Color) windowPane.getRenderProperty(WindowPane.PROPERTY_TITLE_FOREGROUND, Color.WHITE), (Color) windowPane.getRenderProperty(WindowPane.PROPERTY_TITLE_BACKGROUND, Color.BLUE)); FontRender.renderToStyle(outerTitleDivCssStyle, (Font) windowPane.getRenderProperty(WindowPane.PROPERTY_TITLE_FONT)); outerTitleDivCssStyle.setAttribute("position", "absolute"); outerTitleDivCssStyle.setAttribute("top", "0px"); outerTitleDivCssStyle.setAttribute("height", titleHeightPixels + "px"); outerTitleDivCssStyle.setAttribute("width", "100%"); outerTitleDivElement.setAttribute("style", outerTitleDivCssStyle.renderInline()); windowBodyDivElement.appendChild(outerTitleDivElement); // Create inner title DIV element. Element innerTitleDivElement = document.createElement("div"); innerTitleDivElement.setAttribute("id", elementId + "_innertitle"); CssStyle innerTitleDivCssStyle = new CssStyle(); InsetsRender.renderToStyle(innerTitleDivCssStyle, "padding", (Insets) windowPane.getRenderProperty(WindowPane.PROPERTY_TITLE_INSETS)); if (innerTitleDivCssStyle.hasAttributes()) { innerTitleDivElement.setAttribute("style", innerTitleDivCssStyle.renderInline()); } outerTitleDivElement.appendChild(innerTitleDivElement); // Create title layout TABLE. Element titleTableElement = document.createElement("table"); titleTableElement.setAttribute("style", "width:100%; padding: 0px; border-collapse: collapse;"); Element titleTbodyElement = document.createElement("tbody"); titleTableElement.appendChild(titleTbodyElement); Element titleTrElement = document.createElement("tr"); titleTbodyElement.appendChild(titleTrElement); Element titleLabelTdElement = document.createElement("td"); titleLabelTdElement.setAttribute("style", "padding: 0px; text-align: left;"); titleTrElement.appendChild(titleLabelTdElement); Element titleControlsTdElement = document.createElement("td"); titleControlsTdElement.setAttribute("style", "padding: 0px; text-align: right;"); titleTrElement.appendChild(titleControlsTdElement); if (title != null) { DomUtil.setElementText(titleLabelTdElement, title); } Element closeSpanElement = document.createElement("span"); closeSpanElement.setAttribute("id", elementId + "_close"); closeSpanElement.setAttribute("style", "cursor: pointer;"); titleControlsTdElement.appendChild(closeSpanElement); ImageReference closeIcon = (ImageReference) windowPane.getRenderProperty(WindowPane.PROPERTY_CLOSE_ICON, DEFAULT_CLOSE_ICON); if (closeIcon == null) { DomUtil.setElementText(closeSpanElement, "[X]"); } else { Element imgElement = ImageReferenceRender.renderImageReferenceElement(rc, this, windowPane, IMAGE_ID_CLOSE_ICON); closeSpanElement.appendChild(imgElement); } innerTitleDivElement.appendChild(titleTableElement); // Create outer content DIV Element. Element outerContentDivElement = document.createElement("div"); outerContentDivElement.setAttribute("id", elementId + "_outercontent"); CssStyle outerContentDivCssStyle = new CssStyle(); outerContentDivCssStyle.setAttribute("overflow", "auto"); outerContentDivCssStyle.setAttribute("padding", "0px"); outerContentDivCssStyle.setAttribute("position", "absolute"); outerContentDivCssStyle.setAttribute("width", "100%"); outerContentDivCssStyle.setAttribute("top", titleHeightPixels + "px"); if (renderPositioningBothSides) { outerContentDivCssStyle.setAttribute("bottom", "0px"); } if (renderSizeExpression) { outerContentDivCssStyle.setAttribute("height", "expression((document.getElementById('" + bodyElementId + "').clientHeight-" + titleHeightPixels + ")+'px')"); } outerContentDivElement.setAttribute("style", outerContentDivCssStyle.renderInline()); windowBodyDivElement.appendChild(outerContentDivElement); // Create inset content DIV Element. Element contentDivElement = document.createElement("div"); contentDivElement.setAttribute("id", elementId + "_content"); CssStyle contentDivCssStyle = new CssStyle(); InsetsRender.renderToStyle(contentDivCssStyle, "padding", (Insets) windowPane.getRenderProperty(WindowPane.PROPERTY_INSETS)); contentDivElement.setAttribute("style", contentDivCssStyle.renderInline()); outerContentDivElement.appendChild(contentDivElement); // Add event listeners. EventUpdate.createEventAdd(serverMessage, "click", elementId + "_close", "EchoWindowPane.userCloseClick"); if (movable) { EventUpdate.createEventAdd(serverMessage, "mousedown", elementId + "_close", "EchoWindowPane.userCloseMouseDown"); EventUpdate.createEventAdd(serverMessage, "mousedown", elementId + "_title", "EchoWindowPane.windowMoveMouseDown"); } // Render child. if (windowPane.getComponentCount() != 0) { Component child = windowPane.getComponent(0); SynchronizePeer syncPeer = SynchronizePeerFactory.getPeerForComponent(child.getClass()); if (syncPeer instanceof DomUpdateSupport) { ((DomUpdateSupport) syncPeer).renderHtml(rc, update, contentDivElement, child); } else { syncPeer.renderAdd(rc, update, elementId, child); } } } | 45635 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45635/0e16a2d76781ba8685883747d0d8f1c409e05d2f/WindowPanePeer.java/clean/src/webcontainer/java/nextapp/echo2/webcontainer/syncpeer/WindowPanePeer.java | [
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files = projectDAO.load(projectId).getFiles(); | return fileDAO.exists(projectId,fileName); | public boolean existsFile(Long projectId, String fileName) throws ServiceException { Set<File> files = null; try { files = projectDAO.load(projectId).getFiles(); } catch (DAOException e) { e.printStackTrace(); throw new ServiceException(); } if(files==null) return false; for(File f : files) { if(f.getFileName().equals(fileName)) return true; } return false; } | 48076 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48076/23a7bf0759d441dcf52f44009903cbc7f2d08b3d/VHDLLabManagerImpl.java/buggy/src/service/hr/fer/zemris/vhdllab/service/impl/dummy/VHDLLabManagerImpl.java | [
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final TypeFactory typeFactory = getTypeFactory( DataType.ROLE ); | final TypeFactory typeFactory = getTypeFactory( DataType.class ); | public void configure( final Configuration configuration ) throws ConfigurationException { final DefaultConfiguration newConfiguration = new DefaultConfiguration( configuration.getName(), configuration.getLocation() ); final String[] attributes = configuration.getAttributeNames(); for( int i = 0; i < attributes.length; i++ ) { final String name = attributes[ i ]; final String value = configuration.getAttribute( name ); if( name.equals( "id" ) || name.equals( "local-scope" ) ) { configure( this, name, value ); } else { newConfiguration.setAttribute( name, value ); } } final Configuration[] children = configuration.getChildren(); for( int i = 0; i < children.length; i++ ) { newConfiguration.addChild( children[ i ] ); } try { final TypeFactory typeFactory = getTypeFactory( DataType.ROLE ); m_value = typeFactory.create( configuration.getName() ); } catch( final Exception e ) { final String message = REZ.getString( "type.no-create.error" ); throw new ConfigurationException( message, e ); } configure( m_value, newConfiguration ); } | 639 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/639/bc34bb06ca8b29568e31990be726d04559ca2972/TypeInstanceTask.java/buggy/proposal/myrmidon/src/java/org/apache/myrmidon/framework/TypeInstanceTask.java | [
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System.out.print("static const int VM_Constants_REGENERATE_MASK = " | p("static const int VM_Constants_REGENERATE_MASK = " | static void emitVirtualMachineDeclarations (int bootImageAddress) { // load address for the boot image // System.out.print("static const int bootImageAddress = 0x" + Integer.toHexString(bootImageAddress) + ";\n"); // values in VM_Constants, from VM_Configuration // //-#if RVM_FOR_POWERPC if (VM.BuildForPowerPC) { System.out.print("static const int VM_Constants_JTOC_POINTER = " + VM_Constants.JTOC_POINTER + ";\n"); System.out.print("static const int VM_Constants_THREAD_ID_REGISTER = " + VM_Constants.THREAD_ID_REGISTER + ";\n"); System.out.print("static const int VM_Constants_FRAME_POINTER = " + VM_Constants.FRAME_POINTER + ";\n"); System.out.print("static const int VM_Constants_PROCESSOR_REGISTER = " + VM_Constants.PROCESSOR_REGISTER + ";\n"); System.out.print("static const int VM_Constants_FIRST_VOLATILE_GPR = " + VM_Constants.FIRST_VOLATILE_GPR + ";\n"); System.out.print("static const int VM_Constants_DIVIDE_BY_ZERO_MASK = " + VM_Constants.DIVIDE_BY_ZERO_MASK + ";\n"); System.out.print("static const int VM_Constants_DIVIDE_BY_ZERO_TRAP = " + VM_Constants.DIVIDE_BY_ZERO_TRAP + ";\n"); System.out.print("static const int VM_Constants_MUST_IMPLEMENT_MASK = " + VM_Constants.MUST_IMPLEMENT_MASK + ";\n"); System.out.print("static const int VM_Constants_MUST_IMPLEMENT_TRAP = " + VM_Constants.MUST_IMPLEMENT_TRAP + ";\n"); System.out.print("static const int VM_Constants_STORE_CHECK_MASK = " + VM_Constants.STORE_CHECK_MASK + ";\n"); System.out.print("static const int VM_Constants_STORE_CHECK_TRAP = " + VM_Constants.STORE_CHECK_TRAP + ";\n"); System.out.print("static const int VM_Constants_ARRAY_INDEX_MASK = " + VM_Constants.ARRAY_INDEX_MASK + ";\n"); System.out.print("static const int VM_Constants_ARRAY_INDEX_TRAP = " + VM_Constants.ARRAY_INDEX_TRAP + ";\n"); System.out.print("static const int VM_Constants_ARRAY_INDEX_REG_MASK = " + VM_Constants.ARRAY_INDEX_REG_MASK + ";\n"); System.out.print("static const int VM_Constants_ARRAY_INDEX_REG_SHIFT = " + VM_Constants.ARRAY_INDEX_REG_SHIFT + ";\n"); System.out.print("static const int VM_Constants_CONSTANT_ARRAY_INDEX_MASK = " + VM_Constants.CONSTANT_ARRAY_INDEX_MASK + ";\n"); System.out.print("static const int VM_Constants_CONSTANT_ARRAY_INDEX_TRAP = " + VM_Constants.CONSTANT_ARRAY_INDEX_TRAP + ";\n"); System.out.print("static const int VM_Constants_CONSTANT_ARRAY_INDEX_INFO = " + VM_Constants.CONSTANT_ARRAY_INDEX_INFO + ";\n"); System.out.print("static const int VM_Constants_WRITE_BUFFER_OVERFLOW_MASK = " + VM_Constants.WRITE_BUFFER_OVERFLOW_MASK + ";\n"); System.out.print("static const int VM_Constants_WRITE_BUFFER_OVERFLOW_TRAP = " + VM_Constants.WRITE_BUFFER_OVERFLOW_TRAP + ";\n"); System.out.print("static const int VM_Constants_STACK_OVERFLOW_MASK = " + VM_Constants.STACK_OVERFLOW_MASK + ";\n"); System.out.print("static const int VM_Constants_STACK_OVERFLOW_HAVE_FRAME_TRAP = " + VM_Constants.STACK_OVERFLOW_HAVE_FRAME_TRAP + ";\n"); System.out.print("static const int VM_Constants_STACK_OVERFLOW_TRAP = " + VM_Constants.STACK_OVERFLOW_TRAP + ";\n"); System.out.print("static const int VM_Constants_CHECKCAST_MASK = " + VM_Constants.CHECKCAST_MASK + ";\n"); System.out.print("static const int VM_Constants_CHECKCAST_TRAP = " + VM_Constants.CHECKCAST_TRAP + ";\n"); System.out.print("static const int VM_Constants_REGENERATE_MASK = " + VM_Constants.REGENERATE_MASK + ";\n"); System.out.print("static const int VM_Constants_REGENERATE_TRAP = " + VM_Constants.REGENERATE_TRAP + ";\n"); System.out.print("static const int VM_Constants_NULLCHECK_MASK = " + VM_Constants.NULLCHECK_MASK + ";\n"); System.out.print("static const int VM_Constants_NULLCHECK_TRAP = " + VM_Constants.NULLCHECK_TRAP + ";\n"); System.out.print("static const int VM_Constants_JNI_STACK_TRAP_MASK = " + VM_Constants.JNI_STACK_TRAP_MASK + ";\n"); System.out.print("static const int VM_Constants_JNI_STACK_TRAP = " + VM_Constants.JNI_STACK_TRAP + ";\n"); System.out.print("static const int VM_Constants_STACKFRAME_NEXT_INSTRUCTION_OFFSET = " + VM_Constants.STACKFRAME_NEXT_INSTRUCTION_OFFSET + ";\n"); System.out.print("static const int VM_Constants_STACKFRAME_ALIGNMENT = " + VM_Constants.STACKFRAME_ALIGNMENT + " ;\n"); } //-#endif //-#if RVM_FOR_IA32 if (VM.BuildForIA32) { System.out.print("static const int VM_Constants_EAX = " + VM_Constants.EAX + ";\n"); System.out.print("static const int VM_Constants_ECX = " + VM_Constants.ECX + ";\n"); System.out.print("static const int VM_Constants_EDX = " + VM_Constants.EDX + ";\n"); System.out.print("static const int VM_Constants_EBX = " + VM_Constants.EBX + ";\n"); System.out.print("static const int VM_Constants_ESP = " + VM_Constants.ESP + ";\n"); System.out.print("static const int VM_Constants_EBP = " + VM_Constants.EBP + ";\n"); System.out.print("static const int VM_Constants_ESI = " + VM_Constants.ESI + ";\n"); System.out.print("static const int VM_Constants_EDI = " + VM_Constants.EDI + ";\n"); System.out.print("static const int VM_Constants_STACKFRAME_BODY_OFFSET = " + VM_Constants.STACKFRAME_BODY_OFFSET + ";\n"); System.out.print("static const int VM_Constants_STACKFRAME_RETURN_ADDRESS_OFFSET = " + VM_Constants.STACKFRAME_RETURN_ADDRESS_OFFSET + ";\n"); System.out.print("static const int VM_Constants_RVM_TRAP_BASE = " + VM_Constants.RVM_TRAP_BASE + ";\n"); } //-#endif System.out.print("static const int VM_Constants_STACK_SIZE_GUARD = " + VM_Constants.STACK_SIZE_GUARD + ";\n"); System.out.print("static const int VM_Constants_INVISIBLE_METHOD_ID = " + VM_Constants.INVISIBLE_METHOD_ID + ";\n"); System.out.print("static const int VM_ThinLockConstants_TL_THREAD_ID_SHIFT = " + VM_ThinLockConstants.TL_THREAD_ID_SHIFT + ";\n"); System.out.print("static const int VM_Constants_STACKFRAME_HEADER_SIZE = " + VM_Constants.STACKFRAME_HEADER_SIZE + ";\n"); System.out.print("static const int VM_Constants_STACKFRAME_METHOD_ID_OFFSET = " + VM_Constants.STACKFRAME_METHOD_ID_OFFSET + ";\n"); System.out.print("static const int VM_Constants_STACKFRAME_FRAME_POINTER_OFFSET = " + VM_Constants.STACKFRAME_FRAME_POINTER_OFFSET + ";\n"); System.out.print("static const int VM_Constants_STACKFRAME_SENTINEL_FP = " + VM_Constants.STACKFRAME_SENTINEL_FP.toInt() + ";\n"); System.out.print("\n"); // values in VM_ObjectModel // System.out.println("static const int VM_ObjectModel_ARRAY_LENGTH_OFFSET = " + VM_ObjectModel.getArrayLengthOffset() + "\n;"); // values in VM_Scheduler // System.out.print("static const int VM_Scheduler_PRIMORDIAL_PROCESSOR_ID = " + VM_Scheduler.PRIMORDIAL_PROCESSOR_ID + ";\n"); System.out.print("static const int VM_Scheduler_PRIMORDIAL_THREAD_INDEX = " + VM_Scheduler.PRIMORDIAL_THREAD_INDEX + ";\n"); System.out.print("\n"); // values in VM_ThreadEventConstants // System.out.print("static const double VM_ThreadEventConstants_WAIT_INFINITE = " + VM_ThreadEventConstants.WAIT_INFINITE + ";\n"); // values in VM_ThreadIOQueue // System.out.print("static const int VM_ThreadIOQueue_READ_OFFSET = " + VM_ThreadIOQueue.READ_OFFSET + ";\n"); System.out.print("static const int VM_ThreadIOQueue_WRITE_OFFSET = " + VM_ThreadIOQueue.WRITE_OFFSET + ";\n"); System.out.print("static const int VM_ThreadIOQueue_EXCEPT_OFFSET = " + VM_ThreadIOQueue.EXCEPT_OFFSET + ";\n"); System.out.print("\n"); // values in VM_ThreadIOConstants // System.out.print("static const int VM_ThreadIOConstants_FD_READY = " + VM_ThreadIOConstants.FD_READY + ";\n"); System.out.print("static const int VM_ThreadIOConstants_FD_READY_BIT = " + VM_ThreadIOConstants.FD_READY_BIT + ";\n"); System.out.print("static const int VM_ThreadIOConstants_FD_INVALID = " + VM_ThreadIOConstants.FD_INVALID + ";\n"); System.out.print("static const int VM_ThreadIOConstants_FD_INVALID_BIT = " + VM_ThreadIOConstants.FD_INVALID_BIT + ";\n"); System.out.print("static const int VM_ThreadIOConstants_FD_MASK = " + VM_ThreadIOConstants.FD_MASK + ";\n"); System.out.print("\n"); // values in VM_ThreadProcessWaitQueue // System.out.print("static const int VM_ThreadProcessWaitQueue_PROCESS_FINISHED = " + VM_ThreadProcessWaitQueue.PROCESS_FINISHED + ";\n"); // values in VM_Runtime // System.out.print("static const int VM_Runtime_TRAP_UNKNOWN = " + VM_Runtime.TRAP_UNKNOWN + ";\n"); System.out.print("static const int VM_Runtime_TRAP_NULL_POINTER = " + VM_Runtime.TRAP_NULL_POINTER + ";\n"); System.out.print("static const int VM_Runtime_TRAP_ARRAY_BOUNDS = " + VM_Runtime.TRAP_ARRAY_BOUNDS + ";\n"); System.out.print("static const int VM_Runtime_TRAP_DIVIDE_BY_ZERO = " + VM_Runtime.TRAP_DIVIDE_BY_ZERO + ";\n"); System.out.print("static const int VM_Runtime_TRAP_STACK_OVERFLOW = " + VM_Runtime.TRAP_STACK_OVERFLOW + ";\n"); System.out.print("static const int VM_Runtime_TRAP_CHECKCAST = " + VM_Runtime.TRAP_CHECKCAST + ";\n"); System.out.print("static const int VM_Runtime_TRAP_REGENERATE = " + VM_Runtime.TRAP_REGENERATE + ";\n"); System.out.print("static const int VM_Runtime_TRAP_JNI_STACK = " + VM_Runtime.TRAP_JNI_STACK + ";\n"); System.out.print("static const int VM_Runtime_TRAP_MUST_IMPLEMENT = " + VM_Runtime.TRAP_MUST_IMPLEMENT + ";\n"); System.out.print("static const int VM_Runtime_TRAP_STORE_CHECK = " + VM_Runtime.TRAP_STORE_CHECK + ";\n"); System.out.println(); // values in VM_FileSystem // System.out.print("static const int VM_FileSystem_OPEN_READ = " + VM_FileSystem.OPEN_READ + ";\n"); System.out.print("static const int VM_FileSystem_OPEN_WRITE = " + VM_FileSystem.OPEN_WRITE + ";\n"); System.out.print("static const int VM_FileSystem_OPEN_MODIFY = " + VM_FileSystem.OPEN_MODIFY + ";\n"); System.out.print("static const int VM_FileSystem_OPEN_APPEND = " + VM_FileSystem.OPEN_APPEND + ";\n"); System.out.print("static const int VM_FileSystem_SEEK_SET = " + VM_FileSystem.SEEK_SET + ";\n"); System.out.print("static const int VM_FileSystem_SEEK_CUR = " + VM_FileSystem.SEEK_CUR + ";\n"); System.out.print("static const int VM_FileSystem_SEEK_END = " + VM_FileSystem.SEEK_END + ";\n"); System.out.print("static const int VM_FileSystem_STAT_EXISTS = " + VM_FileSystem.STAT_EXISTS + ";\n"); System.out.print("static const int VM_FileSystem_STAT_IS_FILE = " + VM_FileSystem.STAT_IS_FILE + ";\n"); System.out.print("static const int VM_FileSystem_STAT_IS_DIRECTORY = " + VM_FileSystem.STAT_IS_DIRECTORY + ";\n"); System.out.print("static const int VM_FileSystem_STAT_IS_READABLE = " + VM_FileSystem.STAT_IS_READABLE + ";\n"); System.out.print("static const int VM_FileSystem_STAT_IS_WRITABLE = " + VM_FileSystem.STAT_IS_WRITABLE + ";\n"); System.out.print("static const int VM_FileSystem_STAT_LAST_MODIFIED = " + VM_FileSystem.STAT_LAST_MODIFIED + ";\n"); System.out.print("static const int VM_FileSystem_STAT_LENGTH = " + VM_FileSystem.STAT_LENGTH + ";\n"); // fields in VM_Processor // int offset; offset = VM_Entrypoints.threadSwitchRequestedField.getOffset(); System.out.print("static const int VM_Processor_threadSwitchRequested_offset = " + offset + ";\n"); offset = VM_Entrypoints.activeThreadStackLimitField.getOffset(); offset = VM_Entrypoints.activeThreadStackLimitField.getOffset(); System.out.print("static const int VM_Processor_activeThreadStackLimit_offset = " + offset + ";\n"); offset = VM_Entrypoints.pthreadIDField.getOffset(); System.out.print("static const int VM_Processor_pthread_id_offset = " + offset + ";\n"); offset = VM_Entrypoints.epochField.getOffset(); System.out.print("static const int VM_Processor_epoch_offset = " + offset + ";\n"); offset = VM_Entrypoints.activeThreadField.getOffset(); System.out.print("static const int VM_Processor_activeThread_offset = " + offset + ";\n"); //-#if RVM_FOR_IA32 offset = VM_Entrypoints.processorThreadIdField.getOffset(); System.out.print("static const int VM_Processor_threadId_offset = " + offset + ";\n"); offset = VM_Entrypoints.processorFPField.getOffset(); System.out.print("static const int VM_Processor_framePointer_offset = " + offset + ";\n"); offset = VM_Entrypoints.processorJTOCField.getOffset(); System.out.print("static const int VM_Processor_jtoc_offset = " + offset + ";\n"); offset = VM_Entrypoints.processorTrapParamField.getOffset(); System.out.print("static const int VM_Processor_arrayIndexTrapParam_offset = " + offset + ";\n"); //-#endif // fields in VM_Thread // offset = VM_Entrypoints.threadStackField.getOffset(); System.out.print("static const int VM_Thread_stack_offset = " + offset + ";\n"); offset = VM_Entrypoints.stackLimitField.getOffset(); System.out.print("static const int VM_Thread_stackLimit_offset = " + offset + ";\n"); offset = VM_Entrypoints.threadHardwareExceptionRegistersField.getOffset(); System.out.print("static const int VM_Thread_hardwareExceptionRegisters_offset = " + offset + ";\n"); offset = VM_Entrypoints.jniEnvField.getOffset(); System.out.print("static const int VM_Thread_jniEnv_offset = " + offset + ";\n"); // fields in VM_Registers // offset = VM_Entrypoints.registersGPRsField.getOffset(); System.out.print("static const int VM_Registers_gprs_offset = " + offset + ";\n"); offset = VM_Entrypoints.registersFPRsField.getOffset(); System.out.print("static const int VM_Registers_fprs_offset = " + offset + ";\n"); offset = VM_Entrypoints.registersIPField.getOffset(); System.out.print("static const int VM_Registers_ip_offset = " + offset + ";\n"); //-#if RVM_FOR_IA32 offset = VM_Entrypoints.registersFPField.getOffset(); System.out.print("static const int VM_Registers_fp_offset = " + offset + ";\n"); //-#endif //-#if RVM_FOR_POWERPC offset = VM_Entrypoints.registersLRField.getOffset(); System.out.print("static const int VM_Registers_lr_offset = " + offset + ";\n"); //-#endif offset = VM_Entrypoints.registersInUseField.getOffset(); System.out.print("static const int VM_Registers_inuse_offset = " + offset + ";\n"); // fields in VM_JNIEnvironment offset = VM_Entrypoints.JNIEnvAddressField.getOffset(); System.out.print("static const int VM_JNIEnvironment_JNIEnvAddress_offset = " + offset + ";\n"); // fields in java.net.InetAddress // offset = VM_Entrypoints.inetAddressAddressField.getOffset(); System.out.print("static const int java_net_InetAddress_address_offset = " + offset + ";\n"); offset = VM_Entrypoints.inetAddressFamilyField.getOffset(); System.out.print("static const int java_net_InetAddress_family_offset = " + offset + ";\n"); // fields in java.net.SocketImpl // offset = VM_Entrypoints.socketImplAddressField.getOffset(); System.out.print("static const int java_net_SocketImpl_address_offset = " + offset + ";\n"); offset = VM_Entrypoints.socketImplPortField.getOffset(); System.out.print("static const int java_net_SocketImpl_port_offset = " + offset + ";\n"); // fields in com.ibm.JikesRVM.memoryManagers.JMTk.BasePlan offset = VM_Entrypoints.gcInProgressField.getOffset(); System.out.print("static const int com_ibm_JikesRVM_memoryManagers_JMTk_BasePlan_gcInProgressOffset = " + offset + ";\n"); } | 4011 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4011/925454167bc483f10cf328dfcd6f344b2ba4704d/GenerateInterfaceDeclarations.java/clean/rvm/src/tools/bootImageRunner/GenerateInterfaceDeclarations.java | [
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Main.info("SecurityManager=" + sec); | Main.debug("SecurityManager=" + sec); | public KJASSwingConsole() { initComponents(); setSize(500, 300); java.io.PrintStream st = new java.io.PrintStream( new KJASConsoleStream(this) ); System.setOut(st); System.setErr(st); System.out.println( "Java VM version: " + System.getProperty("java.version") ); System.out.println( "Java VM vendor: " + System.getProperty("java.vendor") ); String ph = System.getProperty("http.proxyHost"); String pp = System.getProperty("http.proxyPort"); if (ph != null) { System.out.println("Proxy: " + ph + ":" + pp); } SecurityManager sec = System.getSecurityManager(); Main.info("SecurityManager=" + sec); if (sec == null) { System.out.println( "WARNING: Security Manager disabled!" ); textField.setForeground(java.awt.Color.red); } } | 45545 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45545/810dad2d2b6b9450f2a2bcd2cc5356134dca69f2/KJASSwingConsole.java/clean/khtml/java/org/kde/kjas/server/KJASSwingConsole.java | [
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in.seek(offset); | in.skipBytes(idata - 16); | protected void initMetadata() { Hashtable ifd = ifds[0]; long data = 0; int idata = 0; double ddata = 0; short sdata = 0; try { // -- Parse standard metadata -- // determine byte order boolean little = TiffTools.isLittleEndian(ifd); in.seek(0); put("NewSubfileType", ifd, TiffTools.NEW_SUBFILE_TYPE); put("ImageWidth", ifd, TiffTools.IMAGE_WIDTH); put("ImageLength", ifd, TiffTools.IMAGE_LENGTH); put("BitsPerSample", ifd, TiffTools.BITS_PER_SAMPLE); int comp = TiffTools.getIFDIntValue(ifd, TiffTools.COMPRESSION, false, TiffTools.UNCOMPRESSED); String compression; switch (comp) { case 1: compression = "None"; break; case 2: compression = "CCITT Group 3 1-Dimensional Modified Huffman"; break; case 3: compression = "CCITT T.4 bilevel encoding"; break; case 4: compression = "CCITT T.6 bilevel encoding"; break; case 5: compression = "LZW"; break; case 6: compression = "JPEG"; break; case 32773: compression = "PackBits"; break; default: compression = "None"; } put("Compression", compression); int photo = TiffTools.getIFDIntValue(ifd, TiffTools.PHOTOMETRIC_INTERPRETATION, true, -1); String photoInterp; switch (photo) { case 0: photoInterp = "WhiteIsZero"; break; case 1: photoInterp = "BlackIsZero"; break; case 2: photoInterp = "RGB"; break; case 3: photoInterp = "Palette"; break; case 4: photoInterp = "Transparency Mask"; break; default: photoInterp = "unknown"; break; } put("PhotometricInterpretation", photoInterp); putInt("StripOffsets", ifd, TiffTools.STRIP_OFFSETS); putInt("SamplesPerPixel", ifd, TiffTools.SAMPLES_PER_PIXEL); putInt("StripByteCounts", ifd, TiffTools.STRIP_BYTE_COUNTS); putInt("ColorMap", ifd, TiffTools.COLOR_MAP); int planar = TiffTools.getIFDIntValue(ifd, TiffTools.PLANAR_CONFIGURATION); String planarConfig; switch (planar) { case 1: planarConfig = "Chunky"; break; case 2: planarConfig = "Planar"; break; default: planarConfig = "Chunky"; } put("PlanarConfiguration", planarConfig); int predict = TiffTools.getIFDIntValue(ifd, TiffTools.PREDICTOR); String predictor; switch (predict) { case 1: predictor = "No prediction scheme"; break; case 2: predictor = "Horizontal differencing"; break; default: predictor = "No prediction scheme"; } put("Predictor", predictor); // get Zeiss LSM-specific data // grab the TIF_CZ_LSMINFO structure, 512 bytes long short[] cz = TiffTools.getIFDShortArray(ifd, ZEISS_ID, true); int p = 0; // pointer to next byte in the structure put("MagicNumber", DataTools.bytesToLong(cz, p, 4, little)); p += 4; put("StructureSize", DataTools.bytesToInt(cz, p, little)); p += 4; put("DimensionX", DataTools.bytesToInt(cz, p, little)); p += 4; put("DimensionY", DataTools.bytesToInt(cz, p, little)); p += 4; put("DimensionZ", DataTools.bytesToInt(cz, p, little)); p += 4; int dimensionChannels = DataTools.bytesToInt(cz, p, little); put("DimensionChannels", dimensionChannels); p += 4; put("DimensionTime", DataTools.bytesToInt(cz, p, little)); p += 4; idata = DataTools.bytesToInt(cz, p, little); String type; switch (idata) { case 1: type = "8 bit unsigned integer"; break; case 2: type = "12 bit unsigned integer"; break; case 5: type = "32 bit float"; break; case 0: type = "varying data types"; break; default: type = "8 bit unsigned integer"; break; } put("DataType", type); p += 4; put("ThumbnailX", DataTools.bytesToInt(cz, p, little)); p += 4; put("ThumbnailY", DataTools.bytesToInt(cz, p, little)); p += 4; put("VoxelSizeX", Double.longBitsToDouble( DataTools.bytesToLong(cz, p, little))); p += 8; put("VoxelSizeY", Double.longBitsToDouble( DataTools.bytesToLong(cz, p, little))); p += 8; put("VoxelSizeZ", Double.longBitsToDouble( DataTools.bytesToLong(cz, p, little))); p += 8 + 24; // skip over the next 24 bytes idata = DataTools.bytesToInt(cz, p, 2, little); switch (idata) { case 0: type = "x-y-z scan"; break; case 1: type = "z scan (x-z plane)"; break; case 2: type = "line scan"; break; case 3: type = "time series x-y"; break; case 4: type = "time series x-z"; break; case 5: type = "time series 'Mean of ROIs'"; break; case 6: type = "time series x-y-z"; break; case 7: type = "spline scan"; break; case 8: type = "spline scan x-z"; break; case 9: type = "time series spline plane x-z"; break; case 10: type = "point mode"; break; default: type = "x-y-z scan"; } put("ScanType", type); p += 2; idata = DataTools.bytesToInt(cz, p, 2, little); switch (idata) { case 0: type = "no spectral scan"; break; case 1: type = "acquired with spectral scan"; break; default: type = "no spectral scan"; } put("SpectralScan", type); p += 2; data = DataTools.bytesToLong(cz, p, 4, little); switch ((int) data) { case 0: type = "original scan data"; break; case 1: type = "calculated data"; break; case 2: type = "animation"; break; default: type = "original scan data"; } put("DataType2", type); p += 4; // the following 4 are file offsets data = DataTools.bytesToLong(cz, p, 4, little); parseOverlays(data, "OffsetVectorOverlay", little); p += 4; data = DataTools.bytesToLong(cz, p, 4, little); parseSubBlocks(data, "OffsetInputLut", little); p += 4; data = DataTools.bytesToLong(cz, p, 4, little); parseSubBlocks(data, "OffsetOutputLut", little); p += 4; data = DataTools.bytesToLong(cz, p, 4, little); // seek to this offset and read in the structure there // first we have to make sure that the structure actually exists if (data != 0) { long fp = in.getFilePointer(); in.seek(data); int blockSize = DataTools.read4SignedBytes(in, little); int numColors = DataTools.read4SignedBytes(in, little); int numNames = DataTools.read4SignedBytes(in, little); idata = DataTools.read4SignedBytes(in, little); long offset = data + idata; // will seek to this later idata = DataTools.read4SignedBytes(in, little); long offsetNames = data + idata; // will seek to this // read in the intensity value for each color in.seek(offset); for (int i=0; i<numColors; i++) { data = DataTools.read4UnsignedBytes(in, little); put("Intensity" + i, data); } // read in the channel names in.seek(offsetNames); for (int i=0; i<numNames; i++) { // we want to read until we find a null char String name = ""; char[] current = new char[1]; current[0] = in.readChar(); while (current[0] != 0) { name.concat(new String(current)); current[0] = in.readChar(); } put("ChannelName" + i, name); } in.seek(fp); } p += 4; put("TimeInterval", Double.longBitsToDouble( DataTools.bytesToLong(cz, p, little))); p += 8; // the following 8 are file offsets data = DataTools.bytesToLong(cz, p, 4, little); if (data != 0) { long fp = in.getFilePointer(); in.seek(data); for (int i=0; i<dimensionChannels; i++) { data = DataTools.read4UnsignedBytes(in, little); put("OffsetChannelDataTypes" + i, data); } in.seek(fp); } p += 4; put("OffsetScanInformation", DataTools.bytesToLong(cz, p, 4, little)); p += 4; put("OffsetKsData", DataTools.bytesToLong(cz, p, 4, little)); p += 4; data = DataTools.bytesToLong(cz, p, 4, little); if (data != 0) { long fp = in.getFilePointer(); in.seek(data); in.skipBytes(4); int numStamps = DataTools.read4SignedBytes(in, little); for (int i=0; i<numStamps; i++) { ddata = DataTools.readDouble(in, little); put("TimeStamp" + i, ddata); } in.seek(fp); } p += 4; data = DataTools.bytesToLong(cz, p, 4, little); if (data != 0) { long fp = in.getFilePointer(); in.seek(data); long numBytes = DataTools.read4UnsignedBytes(in, little); int numEvents = DataTools.read4SignedBytes(in, little); for (int i=0; i<numEvents; i++) { in.skipBytes(4); ddata = DataTools.readDouble(in, little); put("Time" + i, ddata); data = DataTools.read4UnsignedBytes(in, little); put("EventType" + i, data); byte[] descr = new byte[(int) (numBytes - 16)]; in.read(descr); put("Description" + i, new String(descr)); } in.seek(fp); } p += 4; data = DataTools.bytesToLong(cz, p, 4, little); parseOverlays(data, "OffsetRoi", little); p += 4; data = DataTools.bytesToLong(cz, p, 4, little); parseOverlays(data, "OffsetBleachRoi", little); p += 4; put("OffsetNextRecording", DataTools.bytesToLong(cz, p, 4, little)); p += 4; put("DisplayAspectX", Double.longBitsToDouble( DataTools.bytesToLong(cz, p, little))); p += 8; put("DisplayAspectY", Double.longBitsToDouble( DataTools.bytesToLong(cz, p, little))); p += 8; put("DisplayAspectZ", Double.longBitsToDouble( DataTools.bytesToLong(cz, p, little))); p += 8; put("DisplayAspectTime", Double.longBitsToDouble( DataTools.bytesToLong(cz, p, little))); p += 8; // the following 4 are file offsets data = DataTools.bytesToLong(cz, p, 4, little); parseOverlays(data, "OffsetMeanOfRoisOverlay", little); p += 4; data = DataTools.bytesToLong(cz, p, 4, little); parseOverlays(data, "OffsetTopoIsolineOverlay", little); p += 4; data = DataTools.bytesToLong(cz, p, 4, little); parseOverlays(data, "OffsetTopoProfileOverlay", little); p += 4; data = DataTools.bytesToLong(cz, p, 4, little); parseOverlays(data, "OffsetLinescanOverlay", little); p += 4; put("ToolbarFlags", DataTools.bytesToLong(cz, p, 4, little)); // the following 2 are file offsets put("OffsetChannelWavelength", DataTools.bytesToLong(cz, p, 4, little)); p += 4; put("OffsetChannelFactors", DataTools.bytesToLong(cz, p, 4, little)); p += 4; put("ObjectiveSphereCorrection", Double.longBitsToDouble( DataTools.bytesToLong(cz, p, little))); p += 8; // the following is a file offset put("OffsetUnmixParameters", DataTools.bytesToLong(cz, p, 4, little)); p += 4; // -- Parse OME-XML metadata -- short[] omeData = TiffTools.getIFDShortArray(ifd, ZEISS_ID, true); int magicNum = DataTools.bytesToInt(omeData, 0, little);// int photoInterp2 = TiffTools.getIFDIntValue(ifd,// TiffTools.PHOTOMETRIC_INTERPRETATION, true, 0);// String photo2;// switch (photoInterp2) {// case 0: photo2 = "monochrome"; break;// case 1: photo2 = "monochrome"; break;// case 2: photo2 = "RGB"; break;// case 3: photo2 = "monochrome"; break;// case 4: photo2 = "RGB"; break;// default: photo2 = "monochrome";// }// OMETools.setAttribute(ome,// "ChannelInfo", "PhotometricInterpretation", photo2); int imageWidth = DataTools.bytesToInt(omeData, 8, little); int imageLength = DataTools.bytesToInt(omeData, 12, little); int zSize = DataTools.bytesToInt(omeData, 16, little); int cSize = DataTools.bytesToInt(omeData, 20, little); int tSize = DataTools.bytesToInt(omeData, 24, little); int pixel = DataTools.bytesToInt(omeData, 28, little); String pixelType; switch (pixel) { case 1: pixelType = "Uint8"; break; case 2: pixelType = "Uint16"; break; case 5: pixelType = "float"; break; default: pixelType = "Uint8"; } short scanType = DataTools.bytesToShort(omeData, 88, little); String dimOrder; switch ((int) scanType) { case 0: dimOrder = "XYZCT"; break; case 1: dimOrder = "XYZCT"; break; case 3: dimOrder = "XYTCZ"; break; case 4: dimOrder = "XYZTC"; break; case 5: dimOrder = "XYTCZ"; break; case 6: dimOrder = "XYZTC"; break; case 7: dimOrder = "XYCTZ"; break; case 8: dimOrder = "XYCZT"; break; case 9: dimOrder = "XYTCZ"; break; default: dimOrder = "XYZCT"; } OMETools.setPixels(ome, new Integer(imageWidth), // SizeX new Integer(imageLength), // SizeY new Integer(zSize), // SizeZ new Integer(cSize), // SizeC new Integer(tSize), // SizeT pixelType, // PixelType null, // BigEndian dimOrder); // DimensionOrder } catch (FormatException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } | 55415 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55415/91859a26506b8a1d312b398da2c3ecd94e02fa60/ZeissLSMReader.java/clean/loci/formats/ZeissLSMReader.java | [
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private static void removeConnectionPool(ConnectionPool connectionPool, int delay) { | private static void removeConnectionPool(String finalizer, ConnectionPool connectionPool, int delay) { | private static void removeConnectionPool(ConnectionPool connectionPool, int delay) { if (connectionPool != null) { try { connectionPool.finalize(delay, "External"); } catch (Throwable t) { LOG.error("Problem trying to remove " + connectionPool.getDefinition().getName() + " connection pool", t); } ConnectionPoolManager.getInstance().removeConnectionPool(connectionPool.getDefinition().getName()); } connectionPool = null; } | 4082 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4082/b49d4aceadfa76e382a10231dccb48ac9263ac72/ProxoolFacade.java/clean/src/java/org/logicalcobwebs/proxool/ProxoolFacade.java | [
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Messages.getString( "info.eclenv.creating.function", new Object[] { sName, oAggregateFunction.getClass().getName() }, Locale.getDefault() ) ); | Messages.getString("info.eclenv.creating.function", new Object[] { sName, oAggregateFunction.getClass().getName() }, Locale.getDefault() )); | public final IAggregateFunction getAggregateFunction(String sName) throws PluginException { if (inEclipseEnv()) { final Object oAggregateFunction = getPluginXmlObject("aggregatefunctions", "aggregateFunction", "name", "function", //$NON-NLS-1$ //$NON-NLS-2$ //$NON-NLS-3$ //$NON-NLS-4$ sName); if (oAggregateFunction != null) { DefaultLoggerImpl.instance().log(ILogger.INFORMATION, Messages.getString( "info.eclenv.creating.function", //$NON-NLS-1$ new Object[] { sName, oAggregateFunction.getClass().getName() }, Locale.getDefault() // LOCALE? ) ); // i18n_CONCATENATIONS_REMOVED return (IAggregateFunction) oAggregateFunction; } DefaultLoggerImpl.instance().log(ILogger.FATAL, Messages.getString( "error.eclenv.cannot.find.function", //$NON-NLS-1$ new Object[] { sName }, Locale.getDefault() // LOCALE? ) ); // i18n_CONCATENATIONS_REMOVED } else { for (int i = 0; i < saAggregateFunctions.length; i++) { if (saAggregateFunctions[i][0].equalsIgnoreCase(sName)) { DefaultLoggerImpl.instance().log(ILogger.INFORMATION, Messages.getString( "info.stdenv.creating.function", //$NON-NLS-1$ new Object[] { sName, saAggregateFunctions[i][1] }, Locale.getDefault() // LOCALE? ) ); // i18n_CONCATENATIONS_REMOVED return (IAggregateFunction) newInstance(saAggregateFunctions[i][1]); } } DefaultLoggerImpl.instance().log(ILogger.FATAL, Messages.getString( "error.stdenv.cannot.find.function", //$NON-NLS-1$ new Object[] { sName }, Locale.getDefault() // LOCALE? ) ); // i18n_CONCATENATIONS_REMOVED } return null; } | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/4c3f1cb28dd9925df77890697e8cb172fe5ebfe8/PluginSettings.java/clean/chart/org.eclipse.birt.chart.engine/src/org/eclipse/birt/chart/util/PluginSettings.java | [
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throw new IOException("missing bytes"); | throw new IOException(CCorePlugin.getResourceString("Util.exception.missingBytes")); | long read_8_bytes(InputStream in) throws IOException { try { byte[] bytes = new byte[8]; int n = in.read(bytes, 0, bytes.length); if (n != 8) { throw new IOException("missing bytes"); } return read_8_bytes(bytes, 0); } catch (IndexOutOfBoundsException e) { throw new IOException("missing bytes"); } } | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/74206bb9c0adfac164644b684d089bbdf8757013/Dwarf.java/clean/core/org.eclipse.cdt.core/utils/org/eclipse/cdt/utils/debug/dwarf/Dwarf.java | [
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if (TaskListView.getDefault() != null) TaskListView.getDefault().getViewer().refresh(); | if (TaskListView.getDefault() != null) TaskListView.getDefault().getViewer().refresh(); | private void addPlannedTasksToCategory() { List<ITaskCategory> categories = MylarTaskListPlugin.getTaskListManager().getTaskList().getUserCategories(); String[] categoryNames = new String[categories.size()]; int i = 0; for (ITaskCategory category : categories) { categoryNames[i++] = category.getDescription(true); } if (categories.size() > 0) { ComboSelectionDialog dialog = new ComboSelectionDialog( Display.getCurrent().getActiveShell(), LABEL_DIALOG, "Select destination category: ", categoryNames, 0); int confirm = dialog.open(); if (confirm == ComboSelectionDialog.OK) { String selected = dialog.getSelectedString(); ITaskCategory destinationCategory = null; for (ITaskCategory category : categories) { if (category.getDescription(true).equals(selected)) { destinationCategory = category; break; // will go to the first one } } if (destinationCategory != null && destinationCategory instanceof TaskCategory) { TaskCategory taskCategory = (TaskCategory)destinationCategory; for (ITask task : planContentProvider.getTasks()) { if (!taskCategory.getChildren().contains(task)) { MylarTaskListPlugin.getTaskListManager().moveToCategory(taskCategory, task);// taskCategory.addTask(task);// task.setCategory(taskCategory); } } if (TaskListView.getDefault() != null) TaskListView.getDefault().getViewer().refresh(); } else { MessageDialog.openInformation(Display.getCurrent().getActiveShell(), LABEL_DIALOG, "Can not add plan tasks into a query category."); } } } else { MessageDialog.openInformation(Display.getCurrent().getActiveShell(), LABEL_DIALOG, "No categories in task list."); } } | 51989 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51989/9a2415b840339225a82de93eb56d7c34bcf91009/TaskPlannerEditorPart.java/buggy/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/tasklist/planner/ui/TaskPlannerEditorPart.java | [
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void set_slot(int id, Any data) throws InvalidSlot; | void set_slot(int id, Any data) throws InvalidSlot; | void set_slot(int id, Any data) throws InvalidSlot; | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/8820e7a18265b8e9be753676d9477fb94a1447c8/ServerRequestInfoOperations.java/clean/core/src/classpath/org/org/omg/PortableInterceptor/ServerRequestInfoOperations.java | [
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Assert.notNull(key, "Key cannot be null"); | Assert.notNull(key, "Key cannot be null"); | public void setLabeledEnum(String key, LabeledEnum value) { Assert.notNull(key, "Key cannot be null"); LabeledEnum old = getLabeledEnum(key); internalSet(key, enumToString(value)); afterSet(key, old, value); } | 55916 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55916/4b6b4231f830cf3aa5046025ca47e7366f7ddeb1/AbstractSettings.java/buggy/sandbox/src/org/springframework/richclient/settings/AbstractSettings.java | [
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urlDocsToBeCopied.meta_id = nexFreeMetaId.intValue(); | urlDocsToBeCopied.meta_id = nextFreeMetaId.intValue(); | private int copyDocument( final Integer meta_id ) { final SQLTransaction transaction = sqlProcessor.startTransaction(); transaction.executeAndCommit( new TransactionContent() { public void execute() throws SQLException { Integer nexFreeMetaId = getMaxIntValuePlusOne( transaction, "meta", "meta_id" ); Table_meta metaToBeCopied = selectFrom_meta( meta_id ); metaToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_meta( transaction, metaToBeCopied ); Table_text_docs textDocsToBeCopied = selectFrom_text_docs( meta_id ); if( null != textDocsToBeCopied ) { textDocsToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_text_docs( transaction, textDocsToBeCopied ); } Table_url_docs urlDocsToBeCopied = selectFrom_url_docs( meta_id ); if( null != urlDocsToBeCopied ) { urlDocsToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_url_docs( transaction, urlDocsToBeCopied ); } Table_browser_docs browserDocsToBeCopied = selectFrom_browser_docs( meta_id ); if( null != browserDocsToBeCopied ) { browserDocsToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_browser_docs( transaction, browserDocsToBeCopied ); } Table_frameset_docs framesetDocsToBeCopied = selectFrom_frameset_docs( meta_id ); if( null != framesetDocsToBeCopied ) { framesetDocsToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_frameset_docs( transaction, framesetDocsToBeCopied ); } Table_fileupload_docs fileUploadDocsToBeCopied = selectFrom_fileupload_docs( meta_id ); if( null != fileUploadDocsToBeCopied ) { fileUploadDocsToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_fileupload_docs( transaction, fileUploadDocsToBeCopied ); } Table_texts[] textsToBeCopied = selectFrom_texts( meta_id ); for( int i = 0; i < textsToBeCopied.length; i++ ) { Table_texts textToBeCopied = textsToBeCopied[i]; textToBeCopied.meta_id = meta_id.intValue(); Integer newCounterValue = getMaxIntValuePlusOne( transaction, "texts", "counter" ); textToBeCopied.counter = newCounterValue.intValue(); insertInto_texts( transaction, textToBeCopied ); } Table_images[] imagesToBeCopied = selectFrom_images( meta_id ); for( int i = 0; i < imagesToBeCopied.length; i++ ) { Table_images imageToBeCopied = imagesToBeCopied[i]; imageToBeCopied.meta_id = meta_id.intValue(); insertInto_images( transaction, imageToBeCopied ); } Table_includes[] includesToBeCopied = selectFrom_includes( meta_id ); for( int i = 0; i < includesToBeCopied.length; i++ ) { Table_includes table_includes = includesToBeCopied[i]; table_includes.meta_id = nexFreeMetaId.intValue(); insertInto_includes( transaction, table_includes ); } Table_doc_permission_sets docPermissionSetsToBeCopied = selectFrom_doc_permission_sets( meta_id ); if( null != docPermissionSetsToBeCopied ) { docPermissionSetsToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_doc_permission_sets( transaction, docPermissionSetsToBeCopied ); } Table_new_doc_permission_sets newDocPermissionSetsToBeCopied = selectFrom_new_doc_permission_sets( meta_id ); if( null != newDocPermissionSetsToBeCopied ) { newDocPermissionSetsToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_new_doc_permission_sets( transaction, newDocPermissionSetsToBeCopied ); } Table_doc_permission_sets_ex docPermissionsSetsExToBeCopied = selectFrom_doc_permission_sets_ex( meta_id ); if( null != docPermissionsSetsExToBeCopied ) { docPermissionsSetsExToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_doc_permission_sets_ex( transaction, docPermissionsSetsExToBeCopied ); } Table_new_doc_permission_sets_ex newDocPermissionSetsExToBeCopied = selectFrom_new_doc_permission_sets_ex( meta_id ); if( null != newDocPermissionSetsExToBeCopied ) { newDocPermissionSetsExToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_new_doc_permission_sets_ex( transaction, newDocPermissionSetsExToBeCopied ); } Table_roles_rights rolesRightsToBeCopied = selectFrom_roles_rights( meta_id ); if( null != rolesRightsToBeCopied ) { rolesRightsToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_roles_rights( transaction, rolesRightsToBeCopied ); } Table_meta_classification metaClassificationToBeCopied = selectFrom_meta_classification( meta_id ); if( null != metaClassificationToBeCopied ) { metaClassificationToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_meta_classification( transaction, metaClassificationToBeCopied ); } Table_meta_section metaSectionToBeCopied = selectFrom_meta_section( meta_id ); if( null != metaSectionToBeCopied ) { metaSectionToBeCopied.meta_id = nexFreeMetaId.intValue(); insertInto_meta_section( transaction, metaSectionToBeCopied ); } } } ); return transaction.getRowCount(); } | 8781 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8781/92985c71b38c159d3e33b0a6189f7037c00bd8c7/DatabaseService.java/buggy/server/src/imcode/server/db/DatabaseService.java | [
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super(context); | super(); | public TestJdbcMigrationLauncher(JdbcMigrationContext context) throws MigrationException { super(context); } | 49460 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49460/2f2c08b2c08972421318e736ccaf7505a8105c69/TestJdbcMigrationLauncher.java/clean/migrate/src/test/com/tacitknowledge/util/migration/jdbc/TestJdbcMigrationLauncher.java | [
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executionContext.popReportItem(); | private Object evaluateDefault(ScalarParameterDefn p, String expr) { Object value = null; int type = p.getDataType(); // evaluate the default value expression if (expr != null) { value = executionContext.evaluate(expr); if( value == null && expr != null && expr.length() > 0) value = expr; try { switch (type) { case IScalarParameterDefn.TYPE_BOOLEAN : value = DataTypeUtil.toBoolean(value); break; case IScalarParameterDefn.TYPE_DATE_TIME : value = DataTypeUtil.toDate(value); break; case IScalarParameterDefn.TYPE_DECIMAL : value = DataTypeUtil.toBigDecimal(value); break; case IScalarParameterDefn.TYPE_FLOAT : value = DataTypeUtil.toDouble(value); break; case IScalarParameterDefn.TYPE_STRING: value = DataTypeUtil.toString(value); break; default: value = null; break; } } catch (BirtException e) { log.log(Level.SEVERE, e.getLocalizedMessage(), e); value = null; } } return value; } | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/317e0084872a4973a293289bd7b020e7649a70fe/EngineTask.java/buggy/engine/org.eclipse.birt.report.engine/src/org/eclipse/birt/report/engine/api/impl/EngineTask.java | [
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if( ( tType == IBasicType.t_int && ( sType == IBasicType.t_char || | if( ( tType == IBasicType.t_int && ( sType == IBasicType.t_int || sType == IBasicType.t_char || | static private void promotion( Cost cost ) throws DOMException{ IType src = getUltimateType( cost.source, true ); IType trg = getUltimateType( cost.target, true ); if( src.isSameType( trg ) ) return; if( src instanceof IBasicType && trg instanceof IBasicType ){ int sType = ((IBasicType)src).getType(); int tType = ((IBasicType)trg).getType(); if( ( tType == IBasicType.t_int && ( sType == IBasicType.t_char || sType == ICPPBasicType.t_bool || sType == ICPPBasicType.t_wchar_t || sType == IBasicType.t_unspecified ) ) || //treat unspecified as int ( tType == IBasicType.t_double && sType == IBasicType.t_float ) ) { cost.promotion = 1; } } else if( src instanceof IEnumeration && trg instanceof IBasicType && ( ((IBasicType)trg).getType() == IBasicType.t_int || ((IBasicType)trg).getType() == IBasicType.t_unspecified ) ) { cost.promotion = 1; } cost.rank = (cost.promotion > 0 ) ? Cost.PROMOTION_RANK : Cost.NO_MATCH_RANK; } | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/52ae549c9f7c94405a98616e9b108eb17f961445/CPPSemantics.java/buggy/core/org.eclipse.cdt.core/parser/org/eclipse/cdt/internal/core/dom/parser/cpp/CPPSemantics.java | [
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public TabbedStackPresentation(IStackPresentationSite site, AbstractTabFolder folder, TabList tabs) { | public TabbedStackPresentation(IStackPresentationSite site, AbstractTabFolder folder, TabOrder tabs, TabDragHandler dragBehavior) { | public TabbedStackPresentation(IStackPresentationSite site, AbstractTabFolder folder, TabList tabs) { super(site); tabFolder = folder; this.tabs = tabs; } | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/947362c08342c2be69172786527fe703a723e912/TabbedStackPresentation.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/presentations/newapi/TabbedStackPresentation.java | [
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} else if (friend_sum > .9 * foe_sum) { centity.strategy.target += .15; } else if (centity.strategy.target < 2) { centity.strategy.target += .3; | System.out.println(centity.getEntity().getShortName() + " " + centity.strategy.target); | protected void initMovement() { this.my_mechs_moved = 0; this.old_moves = null; this.enemies_moved = 0; double max_modifier = 1.4; java.util.Vector entities = game.getEntitiesVector(); double num_entities = Math.sqrt(entities.size()) / 100; Vector friends = new Vector(); Vector foes = new Vector(); double friend_sum = 0; double foe_sum = 0; double max_foe_bv = 0; CEntity max_foe = null; for (int i = 0; i < entities.size(); i++) { Entity entity = (Entity) entities.elementAt(i); CEntity centity = centities.get(entity); centity.enemy_num = i; double old_value = centity.bv * (centity.overall_armor_percent + 1); centity.reset(); //should get fresh values double new_value = centity.bv * (centity.overall_armor_percent + 1); double percent = 1 + (new_value - old_value) / old_value; if (entity.getOwner().equals(getLocalPlayer())) { friends.add(centity); friend_sum += new_value; if (percent < .85) { //small retreat centity.strategy.attack = .85; } else if (percent < .95) { centity.strategy.attack = 1; } else if (percent <= 1 && centity.strategy.attack < max_modifier) { if (percent == 1) { if (centity.strategy.attack < 1) { centity.strategy.attack = Math.min(1.4 * centity.strategy.attack, 1); } else { centity.strategy.attack *= (1.0 + num_entities); } } else { centity.strategy.attack *= (1.0 + 2 * num_entities); } } } else if (!entity.getOwner().isEnemyOf(getLocalPlayer())) { friend_sum += new_value; } else { foes.add(centity); foe_sum += new_value; if (new_value > max_foe_bv) { max_foe_bv = new_value; max_foe = centity; } if (this.getEntitiesOwned().size() > 2) { if (centity.strategy.target > 2) { centity.strategy.target = 1 + .5 * (centity.strategy.target - 2); } if (percent < .85 && centity.strategy.target < max_modifier) { centity.strategy.target *= (1.0 + 6 * num_entities); } else if (percent < .95 && centity.strategy.target < max_modifier) { centity.strategy.target *= (1.0 + 4 * num_entities); } else if (percent <= 1) { if (percent == 1) { centity.strategy.target /= (1.0 + 2 * num_entities); } else { centity.strategy.target /= (1.0 + num_entities); } } //don't go below one if (centity.strategy.target < 1) centity.strategy.target = 1; } } } System.out.println("Us " + friend_sum + " Them " + foe_sum); //do some more reasoning... if (this.unit_values.size() == 0) { this.unit_values.add(new Double(friend_sum)); this.enemy_values.add(new Double(foe_sum)); return; } Iterator i = foes.iterator(); if (friends.size() > 1) { if (Strategy.MainTarget == null || null == game.getEntity(Strategy.MainTarget.getEntity().getId())) { Strategy.MainTarget = max_foe; } Strategy.MainTarget.strategy.target += .2; while (i.hasNext()) { CEntity centity = (CEntity) i.next(); // good turn, keep up the work, but randomize to reduce // predictability if (friend_sum - foe_sum >= .9 * (((Double) this.unit_values.getLast()).doubleValue() - ((Double) this.enemy_values.getLast()).doubleValue())) { if (Compute.randomInt(2) == 1) { centity.strategy.target += .3; } //lost that turn, but still in the fight, just get a // little more aggressive } else if (friend_sum > .9 * foe_sum) { centity.strategy.target += .15; //lost that turn and loosing } else if (centity.strategy.target < 2) { //go for the gusto centity.strategy.target += .3; } System.out.println(centity.getEntity().getShortName() + " " + centity.strategy.target); } } double ratio = friend_sum / foe_sum; double mod = 1; if (ratio < .9) { mod = .95; } else if (ratio < 1) { //no change } else { //attack mod = (1.0 + num_entities); } i = friends.iterator(); while (i.hasNext()) { CEntity centity = (CEntity) i.next(); if (!(mod < 1 && centity.strategy.attack < .6) && !(mod > 1 && centity.strategy.attack >= max_modifier)) centity.strategy.attack *= mod; } System.gc(); //just to make sure } | 4135 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4135/9a77a108fa04401312d80202b90f10e5e9898eee/TestBot.java/clean/megamek/src/megamek/client/bot/TestBot.java | [
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else if ( unescaped ) | } else if ( unescaped ) { | protected void printText( char[] chars, int start, int length, boolean preserveSpace, boolean unescaped ) throws IOException { int index; char ch; if ( preserveSpace ) { // Preserving spaces: the text must print exactly as it is, // without breaking when spaces appear in the text and without // consolidating spaces. If a line terminator is used, a line // break will occur. while ( length-- > 0 ) { ch = chars[ start ]; ++start; if ( ch == '\n' || ch == '\r' || unescaped ) _printer.printText( ch ); else printEscaped( ch ); } } else { // Not preserving spaces: print one part at a time, and // use spaces between parts to break them into different // lines. Spaces at beginning of line will be stripped // by printing mechanism. Line terminator is treated // no different than other text part. while ( length-- > 0 ) { ch = chars[ start ]; ++start; if ( ch == ' ' || ch == '\f' || ch == '\t' || ch == '\n' || ch == '\r' ) _printer.printSpace(); else if ( unescaped ) _printer.printText( ch ); else printEscaped( ch ); } } } | 46079 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46079/cfb3f3097d85124676452a829f95d78eb4d128e5/BaseMarkupSerializer.java/clean/src/org/apache/xml/serialize/BaseMarkupSerializer.java | [
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public void writeSkeletonInstaller (JarOutputStream out) throws Exception { InputStream is = getClass().getResourceAsStream("/lib/installer.jar"); ZipInputStream skeleton_is = null; if (is != null) { skeleton_is = new ZipInputStream (is); } if (skeleton_is == null) { skeleton_is = new ZipInputStream (new FileInputStream ( Compiler.IZPACK_HOME + "lib" + File.separator + "installer.jar")); } ZipEntry zentry; while ((zentry = skeleton_is.getNextEntry()) != null) { // Puts a new entry out.putNextEntry(new ZipEntry(zentry.getName())); // Copy the data copyStream(skeleton_is, out); out.closeEntry(); skeleton_is.closeEntry(); } } | 54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Packager.java/clean/src/lib/com/izforge/izpack/compiler/Packager.java | [
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int temp = DataTools.bytesToInt(tag, pt, 4, true); | int temp = DataTools.bytesToInt(tag, pt, 2, true); | protected void initMetadata() throws FormatException, IOException { // parse the "header" byte array // right now we're using header data from an image item metadata.put("Legacy?", needLegacy ? "yes" : "no"); if (header == null) return; if (needLegacy) metadata = legacy.getMetadata(currentId); int pt = 14; int numBytes = DataTools.bytesToInt(header, pt, 2, true); pt += 2 + numBytes; pt += 2; metadata.put("ImageWidth", new Integer(DataTools.bytesToInt(header, pt, 4, true))); pt += 6; metadata.put("ImageHeight", new Integer(DataTools.bytesToInt(header, pt, 4, true))); pt += 6; pt += 6; int pixel = DataTools.bytesToInt(header, pt, 4, true); pt += 6; String fmt; switch (pixel) { case 1: fmt = "8-bit RGB Triple (B, G, R)"; break; case 2: fmt = "8-bit RGB Quad (B, G, R, A)"; break; case 3: fmt = "8-bit grayscale"; break; case 4: fmt = "16-bit signed integer"; break; case 5: fmt = "32-bit integer"; break; case 6: fmt = "32-bit IEEE float"; break; case 7: fmt = "64-bit IEEE float"; break; case 8: fmt = "16-bit unsigned RGB Triple (B, G, R)"; break; case 9: fmt = "32-bit RGB Triple (B, G, R)"; break; default: fmt = "unknown"; } metadata.put("PixelFormat", fmt); metadata.put("NumberOfImages", new Integer(getImageCount(currentId))); pt += 6; metadata.put("BitsPerPixel", new Integer(DataTools.bytesToInt(header, pt, 4, true))); pt += 6; switch (pixel) { case 1: typeAsString = "Uint8"; break; case 2: typeAsString = "Uint8"; break; case 3: typeAsString = "Uint8"; break; case 4: typeAsString = "int16"; break; case 5: typeAsString = "Uint32"; break; case 6: typeAsString = "float"; break; case 7: typeAsString = "float"; break; case 8: typeAsString = "Uint16"; break; case 9: typeAsString = "Uint32"; break; default: typeAsString = "Uint8"; } // parse the "tags" byte array if (tags == null || tags.size() == 0) return; for (int k=0; k<tags.size(); k++) { byte[] tag = (byte[]) tags.get(k); pt = 24; int numTags = DataTools.bytesToInt(tag, pt, 4, true); pt += 4; for (int i=0; i<numTags; i++) { // we have duples of {value, ID} form if (pt < 0 || pt >= tag.length) break; // first read the data type int type = DataTools.bytesToInt(tag, pt, 2, true); pt += 2; // read in appropriate amount of data Object data = null; int length; try { switch (type) { case 2: // VT_I2: 16 bit integer data = new Integer(DataTools.bytesToInt(tag, pt, 2, true)); pt += 2; break; case 3: // VT_I4: 32 bit integer data = new Integer(DataTools.bytesToInt(tag, pt, 4, true)); pt += 4; break; case 4: // VT_R4: 32 bit float data = new Float(Float.intBitsToFloat( DataTools.bytesToInt(tag, pt, 4, true))); pt += 4; break; case 5: // VT_R8: 64 bit float data = new Double(Double.longBitsToDouble( DataTools.bytesToLong(tag, pt, 8, true))); pt += 8; break; case 7: // VT_DATE: 64 bit float data = new Double(Double.longBitsToDouble( DataTools.bytesToLong(tag, pt, 8, true))); pt += 8; break; case 8: // VT_BSTR: streamed storage object length = DataTools.bytesToInt(tag, pt, 2, true); pt += 2; data = new String(tag, pt, length); pt += length; break; case 11: // VT_BOOL: 16 bit integer (true if !0) int temp = DataTools.bytesToInt(tag, pt, 4, true); data = new Boolean(temp != 0); pt += 4; break; case 16: // VT_I1: 8 bit integer data = new Integer(DataTools.bytesToInt(tag, pt, 1, true)); pt += 1; break; case 17: // VT_UI1: 8 bit unsigned integer data = new Integer(DataTools.bytesToInt(tag, pt, 1, true)); pt += 1; break; case 18: // VT_UI2: 16 bit unsigned integer data = new Integer(DataTools.bytesToInt(tag, pt, 2, true)); pt += 2; break; case 19: // VT_UI4: 32 bit unsigned integer data = new Integer(DataTools.bytesToInt(tag, pt, 4, true)); pt += 4; break; case 20: // VT_I8: 64 bit integer data = new Integer(DataTools.bytesToInt(tag, pt, 8, true)); pt += 8; break; case 21: // VT_UI8: 64 bit unsigned integer data = new Integer(DataTools.bytesToInt(tag, pt, 8, true)); pt += 8; break; case 65: // VT_BLOB: binary data length = DataTools.bytesToInt(tag, pt, 4, true); pt += 4; try { data = new String(tag, pt, length); } catch (Throwable e) { data = null; } pt += length; break; case 68: // VT_STORED_OBJECT: streamed storage object length = DataTools.bytesToInt(tag, pt, 2, true); pt += 2; data = new String(tag, pt, length); pt += length; break; default: data = null; } } catch (Exception e) { } pt += 2; // skip over ID type // read in tag ID int tagID = DataTools.bytesToInt(tag, pt, 4, true); pt += 4; pt += 6; // skip over attribute and attribute type (unused) // really ugly switch statement to put metadata in hashtable if (data != null) { switch (tagID) { case 222: metadata.put("Compression", data); break; case 258: metadata.put("BlackValue", data);// if (ome != null) {// OMETools.setAttribute(ome,// "Grey Channel", "BlackLevel", "" + data);// } break; case 259: metadata.put("WhiteValue", data);// if (ome != null) {// OMETools.setAttribute(ome,// "Grey Channel", "WhiteLevel", "" + data);// } break; case 260: metadata.put("ImageDataMappingAutoRange", data); break; case 261: metadata.put("Thumbnail", data); break; case 262: metadata.put("GammaValue", data);// if (ome != null) {// OMETools.setAttribute(ome,// "Grey Channel", "GammaLevel", "" + data);// } break; case 264: metadata.put("ImageOverExposure", data); break; case 265: metadata.put("ImageRelativeTime1", data); break; case 266: metadata.put("ImageRelativeTime2", data); break; case 267: metadata.put("ImageRelativeTime3", data); break; case 268: metadata.put("ImageRelativeTime4", data); break; case 515: metadata.put("ImageWidth", data); break; case 516: metadata.put("ImageHeight", data); break; //case 518: metadata.put("PixelType", data); break; case 519: metadata.put("NumberOfRawImages", data); break; case 520: metadata.put("ImageSize", data); break; case 523: metadata.put("Acquisition pause annotation", data); break; case 530: metadata.put("Document Subtype", data); break; case 531: metadata.put("Acquisition Bit Depth", data); break; case 534: metadata.put("Z-Stack single representative", data); break; case 769: metadata.put("Scale Factor for X", data); break; case 770: metadata.put("Scale Unit for X", data); break; case 771: metadata.put("Scale Width", data); break; case 772: metadata.put("Scale Factor for Y", data); break; case 773: metadata.put("Scale Unit for Y", data); break; case 774: metadata.put("Scale Height", data); break; case 775: metadata.put("Scale Factor for Z", data); break; case 776: metadata.put("Scale Unit for Z", data); break; case 777: metadata.put("Scale Depth", data); break; case 778: metadata.put("Scaling Parent", data); break; case 1001: metadata.put("Date", data); break; case 1002: metadata.put("code", data); break; case 1003: metadata.put("Source", data); break; case 1004: metadata.put("Message", data); break; case 1026: metadata.put("8-bit acquisition", data); break; case 1027: metadata.put("Camera Bit Depth", data); break; case 1029: metadata.put("MonoReferenceLow", data); break; case 1030: metadata.put("MonoReferenceHigh", data); break; case 1031: metadata.put("RedReferenceLow", data); break; case 1032: metadata.put("RedReferenceHigh", data); break; case 1033: metadata.put("GreenReferenceLow", data); break; case 1034: metadata.put("GreenReferenceHigh", data); break; case 1035: metadata.put("BlueReferenceLow", data); break; case 1036: metadata.put("BlueReferenceHigh", data); break; case 1041: metadata.put("FrameGrabber Name", data); break; case 1042: metadata.put("Camera", data); break; case 1044: metadata.put("CameraTriggerSignalType", data); break; case 1045: metadata.put("CameraTriggerEnable", data); break; case 1046: metadata.put("GrabberTimeout", data); break; case 1281: metadata.put("MultiChannelEnabled", data); break; case 1282: metadata.put("MultiChannel Color", data); break; case 1283: metadata.put("MultiChannel Weight", data); break; case 1284: metadata.put("Channel Name", data); break; case 1536: metadata.put("DocumentInformationGroup", data); break; case 1537: metadata.put("Title", data); break; case 1538: metadata.put("Author", data); break; case 1539: metadata.put("Keywords", data); break; case 1540: metadata.put("Comments", data);break; case 1541: metadata.put("SampleID", data); break; case 1542: metadata.put("Subject", data); break; case 1543: metadata.put("RevisionNumber", data); break; case 1544: metadata.put("Save Folder", data); break; case 1545: metadata.put("FileLink", data); break; case 1546: metadata.put("Document Type", data); break; case 1547: metadata.put("Storage Media", data); break; case 1548: metadata.put("File ID", data); break; case 1549: metadata.put("Reference", data); break; case 1550: metadata.put("File Date", data); break; case 1551: metadata.put("File Size", data); break; case 1553: metadata.put("Filename", data); break; case 1792: metadata.put("ProjectGroup", data);break; case 1793: metadata.put("Acquisition Date", data); break; case 1794: metadata.put("Last modified by", data); break; case 1795: metadata.put("User company", data); break; case 1796: metadata.put("User company logo", data); break; case 1797: metadata.put("Image", data); break; case 1800: metadata.put("User ID", data); break; case 1801: metadata.put("User Name", data); break; case 1802: metadata.put("User City", data); break; case 1803: metadata.put("User Address", data); break; case 1804: metadata.put("User Country", data); break; case 1805: metadata.put("User Phone", data); break; case 1806: metadata.put("User Fax", data); break; case 2049: metadata.put("Objective Name", data); break; case 2050: metadata.put("Optovar", data); break; case 2051: metadata.put("Reflector", data); break; case 2052: metadata.put("Condenser Contrast", data); break; case 2053: metadata.put("Transmitted Light Filter 1", data); break; case 2054: metadata.put("Transmitted Light Filter 2", data); break; case 2055: metadata.put("Reflected Light Shutter", data); break; case 2056: metadata.put("Condenser Front Lens", data); break; case 2057: metadata.put("Excitation Filter Name", data); break; case 2060: metadata.put("Transmitted Light Fieldstop Aperture", data); break; case 2061: metadata.put("Reflected Light Aperture", data); break; case 2062: metadata.put("Condenser N.A.", data); break; case 2063: metadata.put("Light Path", data); break; case 2064: metadata.put("HalogenLampOn", data); break; case 2065: metadata.put("Halogen Lamp Mode", data); break; case 2066: metadata.put("Halogen Lamp Voltage", data); break; case 2068: metadata.put("Fluorescence Lamp Level", data); break; case 2069: metadata.put("Fluorescence Lamp Intensity", data); break; case 2070: metadata.put("LightManagerEnabled", data); break; case 2072: metadata.put("Focus Position", data); break; case 2073: metadata.put("Stage Position X", data);break; case 2074: metadata.put("Stage Position Y", data); break; case 2075: metadata.put("Microscope Name", data);// if (ome != null) {// OMETools.setAttribute(ome, "Microscope", "Name", "" + data);// } break; case 2076: metadata.put("Objective Magnification", data); break; case 2077: metadata.put("Objective N.A.", data); break; case 2078: metadata.put("MicroscopeIllumination", data); break; case 2079: metadata.put("External Shutter 1", data); break; case 2080: metadata.put("External Shutter 2", data); break; case 2081: metadata.put("External Shutter 3", data); break; case 2082: metadata.put("External Filter Wheel 1 Name", data); break; case 2083: metadata.put("External Filter Wheel 2 Name", data); break; case 2084: metadata.put("Parfocal Correction", data); break; case 2086: metadata.put("External Shutter 4", data); break; case 2087: metadata.put("External Shutter 5", data); break; case 2088: metadata.put("External Shutter 6", data); break; case 2089: metadata.put("External Filter Wheel 3 Name", data); break; case 2090: metadata.put("External Filter Wheel 4 Name", data); break; case 2103: metadata.put("Objective Turret Position", data); break; case 2104: metadata.put("Objective Contrast Method", data); break; case 2105: metadata.put("Objective Immersion Type", data); break; case 2107: metadata.put("Reflector Position", data); break; case 2109: metadata.put("Transmitted Light Filter 1 Position", data); break; case 2110: metadata.put("Transmitted Light Filter 2 Position", data); break; case 2112: metadata.put("Excitation Filter Position", data); break; case 2113: metadata.put("Lamp Mirror Position", data); break; case 2114: metadata.put("External Filter Wheel 1 Position", data); break; case 2115: metadata.put("External Filter Wheel 2 Position", data); break; case 2116: metadata.put("External Filter Wheel 3 Position", data); break; case 2117: metadata.put("External Filter Wheel 4 Position", data); break; case 2118: metadata.put("Lightmanager Mode", data); break; case 2119: metadata.put("Halogen Lamp Calibration", data); break; case 2120: metadata.put("CondenserNAGoSpeed", data); break; case 2121: metadata.put("TransmittedLightFieldstopGoSpeed", data); break; case 2122: metadata.put("OptovarGoSpeed", data); break; case 2123: metadata.put("Focus calibrated", data); break; case 2124: metadata.put("FocusBasicPosition", data); break; case 2125: metadata.put("FocusPower", data); break; case 2126: metadata.put("FocusBacklash", data); break; case 2127: metadata.put("FocusMeasurementOrigin", data); break; case 2128: metadata.put("FocusMeasurementDistance", data); break; case 2129: metadata.put("FocusSpeed", data); break; case 2130: metadata.put("FocusGoSpeed", data); break; case 2131: metadata.put("FocusDistance", data); break; case 2132: metadata.put("FocusInitPosition", data); break; case 2133: metadata.put("Stage calibrated", data); break; case 2134: metadata.put("StagePower", data); break; case 2135: metadata.put("StageXBacklash", data); break; case 2136: metadata.put("StageYBacklash", data); break; case 2137: metadata.put("StageSpeedX", data); break; case 2138: metadata.put("StageSpeedY", data); break; case 2139: metadata.put("StageSpeed", data); break; case 2140: metadata.put("StageGoSpeedX", data); break; case 2141: metadata.put("StageGoSpeedY", data); break; case 2142: metadata.put("StageStepDistanceX", data); break; case 2143: metadata.put("StageStepDistanceY", data); break; case 2144: metadata.put("StageInitialisationPositionX", data); break; case 2145: metadata.put("StageInitialisationPositionY", data); break; case 2146: metadata.put("MicroscopeMagnification", data); break; case 2147: metadata.put("ReflectorMagnification", data); break; case 2148: metadata.put("LampMirrorPosition", data); break; case 2149: metadata.put("FocusDepth", data); break; case 2150: metadata.put("MicroscopeType", data);// if (ome != null) {// OMETools.setAttribute(ome, "Microscope", "Type", "" + data);// } break; case 2151: metadata.put("Objective Working Distance", data); break; case 2152: metadata.put("ReflectedLightApertureGoSpeed", data); break; case 2153: metadata.put("External Shutter", data); break; case 2154: metadata.put("ObjectiveImmersionStop", data); break; case 2155: metadata.put("Focus Start Speed", data); break; case 2156: metadata.put("Focus Acceleration", data); break; case 2157: metadata.put("ReflectedLightFieldstop", data); break; case 2158: metadata.put("ReflectedLightFieldstopGoSpeed", data); break; case 2159: metadata.put("ReflectedLightFilter 1", data); break; case 2160: metadata.put("ReflectedLightFilter 2", data); break; case 2161: metadata.put("ReflectedLightFilter1Position", data); break; case 2162: metadata.put("ReflectedLightFilter2Position", data); break; case 2163: metadata.put("TransmittedLightAttenuator", data); break; case 2164: metadata.put("ReflectedLightAttenuator", data); break; case 2165: metadata.put("Transmitted Light Shutter", data); break; case 2166: metadata.put("TransmittedLightAttenuatorGoSpeed", data); break; case 2167: metadata.put("ReflectedLightAttenuatorGoSpeed", data); break; case 2176: metadata.put("TransmittedLightVirtualFilterPosition", data); break; case 2177: metadata.put("TransmittedLightVirtualFilter", data); break; case 2178: metadata.put("ReflectedLightVirtualFilterPosition", data); break; case 2179: metadata.put("ReflectedLightVirtualFilter", data); break; case 2180: metadata.put("ReflectedLightHalogenLampMode", data); break; case 2181: metadata.put("ReflectedLightHalogenLampVoltage", data); break; case 2182: metadata.put("ReflectedLightHalogenLampColorTemperature", data); break; case 2183: metadata.put("ContrastManagerMode", data); break; case 2184: metadata.put("Dazzle Protection Active", data); break; case 2195: metadata.put("Zoom", data);// if (ome != null) {// OMETools.setAttribute(ome,// "DisplayOptions", "Zoom", "" + data);// } break; case 2196: metadata.put("ZoomGoSpeed", data); break; case 2197: metadata.put("LightZoom", data); break; case 2198: metadata.put("LightZoomGoSpeed", data); break; case 2199: metadata.put("LightZoomCoupled", data); break; case 2200: metadata.put("TransmittedLightHalogenLampMode", data); break; case 2201: metadata.put("TransmittedLightHalogenLampVoltage", data); break; case 2202: metadata.put("TransmittedLightHalogenLampColorTemperature", data); break; case 2203: metadata.put("Reflected Coldlight Mode", data); break; case 2204: metadata.put("Reflected Coldlight Intensity", data); break; case 2205: metadata.put("Reflected Coldlight Color Temperature", data); break; case 2206: metadata.put("Transmitted Coldlight Mode", data); break; case 2207: metadata.put("Transmitted Coldlight Intensity", data); break; case 2208: metadata.put("Transmitted Coldlight Color Temperature", data); break; case 2209: metadata.put("Infinityspace Portchanger Position", data); break; case 2210: metadata.put("Beamsplitter Infinity Space", data); break; case 2211: metadata.put("TwoTv VisCamChanger Position", data); break; case 2212: metadata.put("Beamsplitter Ocular", data); break; case 2213: metadata.put("TwoTv CamerasChanger Position", data); break; case 2214: metadata.put("Beamsplitter Cameras", data); break; case 2215: metadata.put("Ocular Shutter", data); break; case 2216: metadata.put("TwoTv CamerasChangerCube", data); break; case 2218: metadata.put("Ocular Magnification", data); break; case 2219: metadata.put("Camera Adapter Magnification", data); break; case 2220: metadata.put("Microscope Port", data); break; case 2221: metadata.put("Ocular Total Magnification", data); break; case 2222: metadata.put("Field of View", data); break; case 2223: metadata.put("Ocular", data); break; case 2224: metadata.put("CameraAdapter", data); break; case 2225: metadata.put("StageJoystickEnabled", data); break; case 2226: metadata.put("ContrastManager Contrast Method", data); break; case 2229: metadata.put("CamerasChanger Beamsplitter Type", data); break; case 2235: metadata.put("Rearport Slider Position", data); break; case 2236: metadata.put("Rearport Source", data); break; case 2237: metadata.put("Beamsplitter Type Infinity Space", data); break; case 2238: metadata.put("Fluorescence Attenuator", data); break; case 2239: metadata.put("Fluorescence Attenuator Position", data); break; case 2307: metadata.put("Camera Framestart Left", data); break; case 2308: metadata.put("Camera Framestart Top", data); break; case 2309: metadata.put("Camera Frame Width", data); break; case 2310: metadata.put("Camera Frame Height", data); break; case 2311: metadata.put("Camera Binning", data); break; case 2312: metadata.put("CameraFrameFull", data); break; case 2313: metadata.put("CameraFramePixelDistance", data); break; case 2318: metadata.put("DataFormatUseScaling", data); break; case 2319: metadata.put("CameraFrameImageOrientation", data); break; case 2320: metadata.put("VideoMonochromeSignalType", data); break; case 2321: metadata.put("VideoColorSignalType", data); break; case 2322: metadata.put("MeteorChannelInput", data); break; case 2323: metadata.put("MeteorChannelSync", data); break; case 2324: metadata.put("WhiteBalanceEnabled", data); break; case 2325: metadata.put("CameraWhiteBalanceRed", data); break; case 2326: metadata.put("CameraWhiteBalanceGreen", data); break; case 2327: metadata.put("CameraWhiteBalanceBlue", data); break; case 2331: metadata.put("CameraFrameScalingFactor", data); break; case 2562: metadata.put("Meteor Camera Type", data); break; case 2564: metadata.put("Exposure Time [ms]", data); break; case 2568: metadata.put("CameraExposureTimeAutoCalculate", data); break; case 2569: metadata.put("Meteor Gain Value", data); break; case 2571: metadata.put("Meteor Gain Automatic", data); break; case 2572: metadata.put("MeteorAdjustHue", data); break; case 2573: metadata.put("MeteorAdjustSaturation", data); break; case 2574: metadata.put("MeteorAdjustRedLow", data); break; case 2575: metadata.put("MeteorAdjustGreenLow", data); break; case 2576: metadata.put("Meteor Blue Low", data); break; case 2577: metadata.put("MeteorAdjustRedHigh", data); break; case 2578: metadata.put("MeteorAdjustGreenHigh", data); break; case 2579: metadata.put("MeteorBlue High", data); break; case 2582: metadata.put("CameraExposureTimeCalculationControl", data); break; case 2585: metadata.put("AxioCamFadingCorrectionEnable", data); break; case 2587: metadata.put("CameraLiveImage", data); break; case 2588: metadata.put("CameraLiveEnabled", data); break; case 2589: metadata.put("LiveImageSyncObjectName", data); break; case 2590: metadata.put("CameraLiveSpeed", data); break; case 2591: metadata.put("CameraImage", data); break; case 2592: metadata.put("CameraImageWidth", data); break; case 2593: metadata.put("CameraImageHeight", data); break; case 2594: metadata.put("CameraImagePixelType", data); break; case 2595: metadata.put("CameraImageShMemoryName", data); break; case 2596: metadata.put("CameraLiveImageWidth", data); break; case 2597: metadata.put("CameraLiveImageHeight", data); break; case 2598: metadata.put("CameraLiveImagePixelType", data); break; case 2599: metadata.put("CameraLiveImageShMemoryName", data); break; case 2600: metadata.put("CameraLiveMaximumSpeed", data); break; case 2601: metadata.put("CameraLiveBinning", data); break; case 2602: metadata.put("CameraLiveGainValue", data); break; case 2603: metadata.put("CameraLiveExposureTimeValue", data); break; case 2604: metadata.put("CameraLiveScalingFactor", data); break; case 2822: metadata.put("ImageTile Index", data); break; case 2823: metadata.put("Image acquisition Index", data); break; case 2841: metadata.put("Original Stage Position X", data); break; case 2842: metadata.put("Original Stage Position Y", data); break; case 3088: metadata.put("LayerDrawFlags", data); break; case 3334: metadata.put("RemainingTime", data); break; case 3585: metadata.put("User Field 1", data); break; case 3586: metadata.put("User Field 2", data); break; case 3587: metadata.put("User Field 3", data); break; case 3588: metadata.put("User Field 4", data); break; case 3589: metadata.put("User Field 5", data); break; case 3590: metadata.put("User Field 6", data); break; case 3591: metadata.put("User Field 7", data); break; case 3592: metadata.put("User Field 8", data); break; case 3593: metadata.put("User Field 9", data); break; case 3594: metadata.put("User Field 10", data); break; case 3840: metadata.put("ID", data); break; case 3841: metadata.put("Name", data); break; case 3842: metadata.put("Value", data); break; case 5501: metadata.put("PvCamClockingMode", data); break; case 8193: metadata.put("Autofocus Status Report", data); break; case 8194: metadata.put("Autofocus Position", data); break; case 8195: metadata.put("Autofocus Position Offset", data); break; case 8196: metadata.put("Autofocus Empty Field Threshold", data); break; case 8197: metadata.put("Autofocus Calibration Name", data); break; case 8198: metadata.put("Autofocus Current Calibration Item", data); break; case 65537: metadata.put("CameraFrameFullWidth", data); break; case 65538: metadata.put("CameraFrameFullHeight", data); break; case 65541: metadata.put("AxioCam Shutter Signal", data); break; case 65542: metadata.put("AxioCam Delay Time", data); break; case 65543: metadata.put("AxioCam Shutter Control", data); break; case 65544: metadata.put("AxioCam BlackRefIsCalculated", data); break; case 65545: metadata.put("AxioCam Black Reference", data); break; case 65547: metadata.put("Camera Shading Correction", data); break; case 65550: metadata.put("AxioCam Enhance Color", data); break; case 65551: metadata.put("AxioCam NIR Mode", data); break; case 65552: metadata.put("CameraShutterCloseDelay", data); break; case 65553: metadata.put("CameraWhiteBalanceAutoCalculate", data); break; case 65556: metadata.put("AxioCam NIR Mode Available", data); break; case 65557: metadata.put("AxioCam Fading Correction Available", data); break; case 65559: metadata.put("AxioCam Enhance Color Available", data); break; case 65565: metadata.put("MeteorVideoNorm", data); break; case 65566: metadata.put("MeteorAdjustWhiteReference", data); break; case 65567: metadata.put("MeteorBlackReference", data); break; case 65568: metadata.put("MeteorChannelInputCountMono", data); break; case 65570: metadata.put("MeteorChannelInputCountRGB", data); break; case 65571: metadata.put("MeteorEnableVCR", data); break; case 65572: metadata.put("Meteor Brightness", data); break; case 65573: metadata.put("Meteor Contrast", data); break; case 65575: metadata.put("AxioCam Selector", data); break; case 65576: metadata.put("AxioCam Type", data); break; case 65577: metadata.put("AxioCam Info", data); break; case 65580: metadata.put("AxioCam Resolution", data); break; case 65581: metadata.put("AxioCam Color Model", data); break; case 65582: metadata.put("AxioCam MicroScanning", data); break; case 65585: metadata.put("Amplification Index", data); break; case 65586: metadata.put("Device Command", data); break; case 65587: metadata.put("BeamLocation", data); break; case 65588: metadata.put("ComponentType", data); break; case 65589: metadata.put("ControllerType", data); break; case 65590: metadata.put("CameraWhiteBalanceCalculationRedPaint", data); break; case 65591: metadata.put("CameraWhiteBalanceCalculationBluePaint", data); break; case 65592: metadata.put("CameraWhiteBalanceSetRed", data); break; case 65593: metadata.put("CameraWhiteBalanceSetGreen", data); break; case 65594: metadata.put("CameraWhiteBalanceSetBlue", data); break; case 65595: metadata.put("CameraWhiteBalanceSetTargetRed", data); break; case 65596: metadata.put("CameraWhiteBalanceSetTargetGreen", data); break; case 65597: metadata.put("CameraWhiteBalanceSetTargetBlue", data); break; case 65598: metadata.put("ApotomeCamCalibrationMode", data); break; case 65599: metadata.put("ApoTome Grid Position", data); break; case 65600: metadata.put("ApotomeCamScannerPosition", data); break; case 65601: metadata.put("ApoTome Full Phase Shift", data); break; case 65602: metadata.put("ApoTome Grid Name", data); break; case 65603: metadata.put("ApoTome Staining", data); break; case 65604: metadata.put("ApoTome Processing Mode", data); break; case 65605: metadata.put("ApotmeCamLiveCombineMode", data); break; case 65606: metadata.put("ApoTome Filter Name", data); break; case 65607: metadata.put("Apotome Filter Strength", data); break; case 65608: metadata.put("ApotomeCamFilterHarmonics", data); break; case 65609: metadata.put("ApoTome Grating Period", data); break; case 65610: metadata.put("ApoTome Auto Shutter Used", data); break; case 65611: metadata.put("Apotome Cam Status", data); break; case 65612: metadata.put("ApotomeCamNormalize", data); break; case 65613: metadata.put("ApotomeCamSettingsManager", data); break; case 65614: metadata.put("DeepviewCamSupervisorMode", data); break; case 65615: metadata.put("DeepView Processing", data); break; case 65616: metadata.put("DeepviewCamFilterName", data); break; case 65617: metadata.put("DeepviewCamStatus", data); break; case 65618: metadata.put("DeepviewCamSettingsManager", data); break; case 65619: metadata.put("DeviceScalingName", data); break; case 65620: metadata.put("CameraShadingIsCalculated", data); break; case 65621: metadata.put("CameraShadingCalculationName", data); break; case 65622: metadata.put("CameraShadingAutoCalculate", data); break; case 65623: metadata.put("CameraTriggerAvailable", data); break; case 65626: metadata.put("CameraShutterAvailable", data); break; case 65627: metadata.put("AxioCam ShutterMicroScanningEnable", data); break; case 65628: metadata.put("ApotomeCamLiveFocus", data); break; case 65629: metadata.put("DeviceInitStatus", data); break; case 65630: metadata.put("DeviceErrorStatus", data); break; case 65631: metadata.put("ApotomeCamSliderInGridPosition", data); break; case 65632: metadata.put("Orca NIR Mode Used", data); break; case 65633: metadata.put("Orca Analog Gain", data); break; case 65634: metadata.put("Orca Analog Offset", data); break; case 65635: metadata.put("Orca Binning", data); break; case 65636: metadata.put("Orca Bit Depth", data); break; case 65637: metadata.put("ApoTome Averaging Count", data); break; case 65638: metadata.put("DeepView DoF", data); break; case 65639: metadata.put("DeepView EDoF", data); break; case 65643: metadata.put("DeepView Slider Name", data); break; } } } } // Now that we've done the heavy lifting lets get the data into the active // metadata store. initMetadataStore(); } | 49800 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49800/650b0f42fd429580da06c39d7846e8126cf26491/ZeissZVIReader.java/buggy/loci/formats/in/ZeissZVIReader.java | [
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protected void initVkMap() { | protected void initVkMap(int []vkMap, char[] lcharMap, char[] ucharMap, char[] altGrCharMap) { | protected void initVkMap() { vkMap[0] = KeyEvent.VK_UNDEFINED; vkMap[1] = KeyEvent.VK_ESCAPE; vkMap[2] = KeyEvent.VK_AMPERSAND; vkMap[3] = KeyEvent.VK_E; // TODO : remap to vkMap[4] = KeyEvent.VK_QUOTEDBL; vkMap[5] = KeyEvent.VK_QUOTE; vkMap[6] = KeyEvent.VK_OPEN_BRACKET; vkMap[7] = KeyEvent.VK_MINUS; vkMap[8] = KeyEvent.VK_DEAD_GRAVE; // TODO: remap to vkMap[9] = KeyEvent.VK_UNDERSCORE; vkMap[10] = KeyEvent.VK_DEAD_CEDILLA; vkMap[11] = KeyEvent.VK_DEAD_ACUTE; vkMap[12] = KeyEvent.VK_CLOSE_BRACKET; vkMap[13] = KeyEvent.VK_EQUALS; vkMap[14] = KeyEvent.VK_BACK_SPACE; vkMap[15] = KeyEvent.VK_TAB; vkMap[16] = KeyEvent.VK_A; vkMap[17] = KeyEvent.VK_Z; vkMap[18] = KeyEvent.VK_E; vkMap[19] = KeyEvent.VK_R; vkMap[20] = KeyEvent.VK_T; vkMap[21] = KeyEvent.VK_Y; vkMap[22] = KeyEvent.VK_U; vkMap[23] = KeyEvent.VK_I; vkMap[24] = KeyEvent.VK_O; vkMap[25] = KeyEvent.VK_P; vkMap[26] = KeyEvent.VK_DEAD_CIRCUMFLEX; vkMap[27] = KeyEvent.VK_DOLLAR; vkMap[28] = KeyEvent.VK_ENTER; vkMap[29] = KeyEvent.VK_CONTROL; vkMap[30] = KeyEvent.VK_Q; vkMap[31] = KeyEvent.VK_S; vkMap[32] = KeyEvent.VK_D; vkMap[33] = KeyEvent.VK_F; vkMap[34] = KeyEvent.VK_G; vkMap[35] = KeyEvent.VK_H; vkMap[36] = KeyEvent.VK_J; vkMap[37] = KeyEvent.VK_K; vkMap[38] = KeyEvent.VK_L; vkMap[39] = KeyEvent.VK_M; vkMap[40] = KeyEvent.VK_QUOTE; //'%' not found... vkMap[41] = KeyEvent.VK_UNDEFINED; // '' not found vkMap[42] = KeyEvent.VK_SHIFT; vkMap[43] = KeyEvent.VK_MULTIPLY; vkMap[44] = KeyEvent.VK_W; vkMap[45] = KeyEvent.VK_X; vkMap[46] = KeyEvent.VK_C; vkMap[47] = KeyEvent.VK_V; vkMap[48] = KeyEvent.VK_B; vkMap[49] = KeyEvent.VK_N; vkMap[50] = KeyEvent.VK_COMMA; vkMap[51] = KeyEvent.VK_SEMICOLON; vkMap[52] = KeyEvent.VK_COLON; vkMap[53] = KeyEvent.VK_EXCLAMATION_MARK; vkMap[54] = KeyEvent.VK_SHIFT; vkMap[55] = KeyEvent.VK_CONTROL; vkMap[56] = KeyEvent.VK_ALT; vkMap[57] = KeyEvent.VK_SPACE; vkMap[58] = KeyEvent.VK_CAPS_LOCK; vkMap[59] = KeyEvent.VK_F1; vkMap[60] = KeyEvent.VK_F2; vkMap[61] = KeyEvent.VK_F3; vkMap[62] = KeyEvent.VK_F4; vkMap[63] = KeyEvent.VK_F5; vkMap[64] = KeyEvent.VK_F6; vkMap[65] = KeyEvent.VK_F7; vkMap[66] = KeyEvent.VK_F8; vkMap[67] = KeyEvent.VK_F9; vkMap[68] = KeyEvent.VK_F10; vkMap[69] = KeyEvent.VK_NUM_LOCK; vkMap[70] = KeyEvent.VK_SCROLL_LOCK; vkMap[71] = KeyEvent.VK_NUMPAD7; vkMap[72] = KeyEvent.VK_NUMPAD8; vkMap[73] = KeyEvent.VK_NUMPAD9; vkMap[74] = KeyEvent.VK_SUBTRACT; vkMap[75] = KeyEvent.VK_NUMPAD4; vkMap[76] = KeyEvent.VK_NUMPAD5; vkMap[77] = KeyEvent.VK_NUMPAD6; vkMap[78] = KeyEvent.VK_ADD; vkMap[79] = KeyEvent.VK_NUMPAD1; vkMap[80] = KeyEvent.VK_NUMPAD2; vkMap[81] = KeyEvent.VK_NUMPAD3; vkMap[82] = KeyEvent.VK_NUMPAD0; vkMap[83] = KeyEvent.VK_DECIMAL; vkMap[86] = KeyEvent.VK_LESS; vkMap[87] = KeyEvent.VK_F11; vkMap[88] = KeyEvent.VK_F12; vkMap[96] = KeyEvent.VK_INSERT; vkMap[97] = KeyEvent.VK_HOME; vkMap[98] = KeyEvent.VK_PAGE_UP; vkMap[99] = KeyEvent.VK_DIVIDE; vkMap[100] = KeyEvent.VK_PRINTSCREEN; vkMap[101] = KeyEvent.VK_DELETE; vkMap[102] = KeyEvent.VK_END; vkMap[103] = KeyEvent.VK_PAGE_DOWN; vkMap[104] = KeyEvent.VK_UP; vkMap[105] = KeyEvent.VK_SEPARATOR; vkMap[111] = KeyEvent.VK_SLASH; vkMap[112] = KeyEvent.VK_CONTROL; vkMap[113] = KeyEvent.VK_LEFT; vkMap[114] = KeyEvent.VK_DOWN; vkMap[115] = KeyEvent.VK_RIGHT; vkMap[116] = KeyEvent.VK_PAUSE; lcharMap[2] = '&'; lcharMap[3] = ''; lcharMap[4] = '"'; lcharMap[5] = '\''; lcharMap[6] = '('; lcharMap[7] = '-'; lcharMap[8] = ''; lcharMap[9] = '_'; lcharMap[10] = ''; lcharMap[11] = ''; lcharMap[12] = ')'; lcharMap[13] = '='; lcharMap[14] = '\b'; lcharMap[15] = '\t'; lcharMap[16] = 'a'; lcharMap[17] = 'z'; lcharMap[18] = 'e'; lcharMap[19] = 'r'; lcharMap[20] = 't'; lcharMap[21] = 'y'; lcharMap[22] = 'u'; lcharMap[23] = 'i'; lcharMap[24] = 'o'; lcharMap[25] = 'p'; lcharMap[26] = '^'; lcharMap[27] = '$'; lcharMap[28] = '\n'; lcharMap[30] = 'q'; lcharMap[31] = 's'; lcharMap[32] = 'd'; lcharMap[33] = 'f'; lcharMap[34] = 'g'; lcharMap[35] = 'h'; lcharMap[36] = 'j'; lcharMap[37] = 'k'; lcharMap[38] = 'l'; lcharMap[39] = 'm'; lcharMap[40] = ''; lcharMap[41] = ''; lcharMap[43] = '*'; lcharMap[44] = 'w'; lcharMap[45] = 'x'; lcharMap[46] = 'c'; lcharMap[47] = 'v'; lcharMap[48] = 'b'; lcharMap[49] = 'n'; lcharMap[50] = ','; lcharMap[51] = ';'; lcharMap[52] = ':'; lcharMap[53] = '!';// lcharMap[55] = ' '; lcharMap[57] = ' '; lcharMap[71] = '7'; lcharMap[72] = '8'; lcharMap[73] = '9'; lcharMap[74] = '-'; lcharMap[75] = '4'; lcharMap[76] = '5'; lcharMap[77] = '6'; lcharMap[78] = '+'; lcharMap[79] = '1'; lcharMap[80] = '2'; lcharMap[81] = '3'; lcharMap[82] = '0'; lcharMap[83] = '.'; lcharMap[86] = '<'; lcharMap[111] = '/'; ucharMap[2] = '1'; ucharMap[3] = '2'; ucharMap[4] = '3'; ucharMap[5] = '4'; ucharMap[6] = '5'; ucharMap[7] = '6'; ucharMap[8] = '7'; ucharMap[9] = '8'; ucharMap[10] = '9'; ucharMap[11] = '0'; ucharMap[12] = ''; ucharMap[13] = '+'; ucharMap[14] = '\b'; ucharMap[15] = '\t'; ucharMap[16] = 'A'; ucharMap[17] = 'Z'; ucharMap[18] = 'E'; ucharMap[19] = 'R'; ucharMap[20] = 'T'; ucharMap[21] = 'Y'; ucharMap[22] = 'U'; ucharMap[23] = 'I'; ucharMap[24] = 'O'; ucharMap[25] = 'P'; ucharMap[26] = ''; ucharMap[27] = ''; ucharMap[28] = '\n'; ucharMap[30] = 'Q'; ucharMap[31] = 'S'; ucharMap[32] = 'D'; ucharMap[33] = 'F'; ucharMap[34] = 'G'; ucharMap[35] = 'H'; ucharMap[36] = 'J'; ucharMap[37] = 'K'; ucharMap[38] = 'L'; ucharMap[39] = 'M'; ucharMap[40] = '%'; ucharMap[41] = '~'; ucharMap[43] = ''; ucharMap[44] = 'W'; ucharMap[45] = 'X'; ucharMap[46] = 'C'; ucharMap[47] = 'V'; ucharMap[48] = 'B'; ucharMap[49] = 'N'; ucharMap[50] = '?'; ucharMap[51] = '.'; ucharMap[52] = '/'; ucharMap[53] = '';// ucharMap[55] = ' '; ucharMap[57] = ' '; ucharMap[71] = '7'; ucharMap[72] = '8'; ucharMap[73] = '9'; ucharMap[74] = '-'; ucharMap[75] = '4'; ucharMap[76] = '5'; ucharMap[77] = '6'; ucharMap[78] = '+'; ucharMap[79] = '1'; ucharMap[80] = '2'; ucharMap[81] = '3'; ucharMap[82] = '0'; ucharMap[83] = '.'; ucharMap[86] = '>'; ucharMap[111] = '/'; altGrCharMap[41] = ''; int i = 2; altGrCharMap[i++] = ''; altGrCharMap[i++] = '~'; altGrCharMap[i++] = '#'; altGrCharMap[i++] = '{'; altGrCharMap[i++] = '['; altGrCharMap[i++] = '|'; altGrCharMap[i++] = '`'; altGrCharMap[i++] = '\\'; altGrCharMap[i++] = '^'; altGrCharMap[i++] = '@'; altGrCharMap[i++] = ']'; altGrCharMap[i++] = '}';// altGrCharMap[i++] = ' ';// backspace do nothing// altGrCharMap[i++] = ' ';// tab do nothing i+=2; altGrCharMap[i++] = ''; altGrCharMap[i++] = ''; altGrCharMap[i++] = ''; altGrCharMap[i++] = ''; altGrCharMap[i++] = '?';// altGrCharMap[i++] = ' '; // y -> do nothing// altGrCharMap[i++] = ' '; // u -> do nothing// altGrCharMap[i++] = ' '; // i -> do nothing i+=3; altGrCharMap[i++] = ''; altGrCharMap[i++] = '';// altGrCharMap[i++] = ' '; // dead ^ -> do nothing i++; altGrCharMap[i++] = '?';// altGrCharMap[i++] = ' '; // enter -> do nothing// altGrCharMap[i++] = ' '; // Ctrl -> do nothing i+=2; altGrCharMap[i++] = '@'; altGrCharMap[i++] = ''; altGrCharMap[i++] = ''; altGrCharMap[i++] = '?'; altGrCharMap[i++] = '?'; altGrCharMap[i++] = '?'; altGrCharMap[i++] = 'j';// altGrCharMap[i++] = ' '; // k -> do nothing i++; altGrCharMap[i++] = '?'; altGrCharMap[i++] = '';// altGrCharMap[i++] = ' '; // % -> do nothing// altGrCharMap[i++] = ' '; // * -> do nothing i+=2; altGrCharMap[i++] = '?'; altGrCharMap[i++] = ''; altGrCharMap[i++] = '';// altGrCharMap[i++] = ' '; // v -> do nothing// altGrCharMap[i++] = ' '; // b -> do nothing i+=2; altGrCharMap[i++] = 'n';// altGrCharMap[i++] = ' '; // , -> do nothing// altGrCharMap[i++] = ' '; // ; -> do nothing i+=2; altGrCharMap[i++] = ''; altGrCharMap[i++] = '?'; altGrCharMap[i++] = '?'; altGrCharMap[86] = '|'; altGrCharMap[111] = '/'; } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/57843b9b284ea62b4a1db76be6395f975acfd0fc/KeyboardInterpreter_FR.java/buggy/core/src/driver/org/jnode/driver/input/l10n/KeyboardInterpreter_FR.java | [
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update(createInitialContext()); | fUpdatingCount++; try { update(createInitialContext()); } finally { fUpdatingCount--; } | public final void initialize() { update(createInitialContext()); } | 9698 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9698/e7464d9a0db0b4ad6e42cef9a8fb5979a58c93da/DefaultJavaFoldingStructureProvider.java/buggy/org.eclipse.jdt.ui/ui/org/eclipse/jdt/ui/text/folding/DefaultJavaFoldingStructureProvider.java | [
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} else if (instance instanceof Writable) { ((Writable)instance).write(out); | private static void writeObject(DataOutput out, Object instance, Class theClass) throws IOException { if (instance == null) { // null instance = new NullInstance(theClass); theClass = NullInstance.class; } UTF8.writeString(out, theClass.getName()); if (theClass.isArray()) { // array int length = Array.getLength(instance); out.writeInt(length); for (int i = 0; i < length; i++) { writeObject(out, Array.get(instance, i), theClass.getComponentType()); } } else if (theClass == String.class) { // String UTF8.writeString(out, (String)instance); } else if (theClass.isPrimitive()) { // primitive type if (theClass == Boolean.TYPE) { // boolean out.writeBoolean(((Boolean)instance).booleanValue()); } else if (theClass == Character.TYPE) { // char out.writeChar(((Character)instance).charValue()); } else if (theClass == Byte.TYPE) { // byte out.writeByte(((Byte)instance).byteValue()); } else if (theClass == Short.TYPE) { // short out.writeShort(((Short)instance).shortValue()); } else if (theClass == Integer.TYPE) { // int out.writeInt(((Integer)instance).intValue()); } else if (theClass == Long.TYPE) { // long out.writeLong(((Long)instance).longValue()); } else if (theClass == Float.TYPE) { // float out.writeFloat(((Float)instance).floatValue()); } else if (theClass == Double.TYPE) { // double out.writeDouble(((Double)instance).doubleValue()); } else if (theClass == Void.TYPE) { // void } else { throw new IllegalArgumentException("Not a known primitive: "+theClass); } } else if (instance instanceof Writable) { // Writable ((Writable)instance).write(out); } else { throw new IOException("Can't write: " + instance + " as " + theClass); } } | 1316 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1316/1e027c52d3746fdda27eb01324ca3994c20e6293/RPC.java/clean/src/java/org/apache/nutch/ipc/RPC.java | [
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protected void internalReceiveReply(Reply reply) throws java.io.IOException { if (messageEventProducer != null) messageEventProducer.notifyListeners(reply, MessageEvent.REPLY_RECEIVED, bodyID); replyReceiver.receiveReply(reply, this, getFuturePool()); } | protected void internalReceiveReply(Reply reply) throws java.io.IOException { if (messageEventProducer != null) messageEventProducer.notifyListeners(reply, MessageEvent.REPLY_RECEIVED, bodyID); replyReceiver.receiveReply(reply, this, getFuturePool()); } | protected void internalReceiveReply(Reply reply) throws java.io.IOException { if (messageEventProducer != null) messageEventProducer.notifyListeners(reply, MessageEvent.REPLY_RECEIVED, bodyID); replyReceiver.receiveReply(reply, this, getFuturePool()); } | 23362 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/23362/625cd3611da648072e66b62b74a66e1548e31628/BodyImpl.java/buggy/src/org/objectweb/proactive/core/body/BodyImpl.java | [
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xsqlvar.sqldata = new String(db.in.readOpaque(xsqlvar.sqllen)); | xsqlvar.sqldata = db.in.readOpaque(xsqlvar.sqllen); | private Object readSQLDatum(isc_db_handle_impl db, XSQLVAR xsqlvar) throws GDSException { try { switch (xsqlvar.sqltype & ~1) { case SQL_TEXT: xsqlvar.sqldata = new String(db.in.readOpaque(xsqlvar.sqllen)); break; case SQL_VARYING: xsqlvar.sqldata = new String(db.in.readOpaque(db.in.readInt())); break; case SQL_SHORT: xsqlvar.sqldata = new Short((short) db.in.readInt()); break; case SQL_LONG: xsqlvar.sqldata = new Integer(db.in.readInt()); break; case SQL_FLOAT: xsqlvar.sqldata = new Float(db.in.readFloat()); break; case SQL_DOUBLE: xsqlvar.sqldata = new Double(db.in.readDouble()); break;// case SQL_D_FLOAT:// break; case SQL_TIMESTAMP: xsqlvar.sqldata = new java.sql.Timestamp( decodeDate(db.in.readInt()).getTime() + decodeTime(db.in.readInt()).getTime()); break; case SQL_BLOB: xsqlvar.sqldata = new Long(db.in.readLong()); break; case SQL_ARRAY: xsqlvar.sqldata = new Long(db.in.readLong()); break; case SQL_QUAD: xsqlvar.sqldata = new Long(db.in.readLong()); break; case SQL_TYPE_TIME: xsqlvar.sqldata = decodeTime(db.in.readInt()); break; case SQL_TYPE_DATE: xsqlvar.sqldata = decodeDate(db.in.readInt()); break; case SQL_INT64: xsqlvar.sqldata = new Long(db.in.readLong()); break; } xsqlvar.sqlind = db.in.readInt(); if (xsqlvar.sqlind == 0) { return xsqlvar.sqldata; } else if (xsqlvar.sqlind == -1) { return null; } else { throw new GDSException("invalid sqlind value: " + xsqlvar.sqlind); } } catch (IOException ex) { throw new GDSException(isc_net_read_err); } } | 6960 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6960/bc1fb4739702b6ce42c7d12ba750773d64acc238/GDS_Impl.java/buggy/src/org/firebirdsql/jgds/GDS_Impl.java | [
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{ return visibles; } | { return visibleRowCount; } | public int getVisibleRowCount() { return visibles; } | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/0788b89b7368770a1157f825d60dd8c5a9df183e/JList.java/buggy/core/src/classpath/javax/javax/swing/JList.java | [
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