Larrivhan commited on
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96ea52f
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1 Parent(s): e141597

Replace cluster paths in metadata files (18800/22483)

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Files changed (50) hide show
  1. method_inputs/a1/BOT_X10_1K/r00000002/n32/meta.json +2 -2
  2. method_inputs/a1/BOT_X10_1K/r00000003/n32/meta.json +2 -2
  3. method_inputs/a1/BOT_X10_1K/r00000004/n32/meta.json +2 -2
  4. method_inputs/a1/BOT_X10_1K/r00000005/n32/meta.json +2 -2
  5. method_inputs/a1/BOT_X10_1K/r00000006/n32/meta.json +2 -2
  6. method_inputs/a1/BOT_X10_1K/r00000007/n32/meta.json +2 -2
  7. method_inputs/a1/BOT_X10_1K/receipts/export_51933154.json +23 -23
  8. method_inputs/a1/BOT_X10_1K/receipts/identity_scan_51933154.json +1 -1
  9. method_inputs/a1/BOT_X10_1K/receipts/open_audit_51933154.json +167 -167
  10. method_inputs/a1/BOT_X10_20K/r00000000/n32/meta.json +2 -2
  11. method_inputs/a1/BOT_X10_20K/r00000001/n32/meta.json +2 -2
  12. method_inputs/a1/BOT_X10_20K/r00000002/n32/meta.json +2 -2
  13. method_inputs/a1/BOT_X10_20K/r00000003/n32/meta.json +2 -2
  14. method_inputs/a1/BOT_X10_20K/r00000004/n32/meta.json +2 -2
  15. method_inputs/a1/BOT_X10_20K/r00000005/n32/meta.json +2 -2
  16. method_inputs/a1/BOT_X10_20K/r00000006/n32/meta.json +2 -2
  17. method_inputs/a1/BOT_X10_20K/r00000007/n32/meta.json +2 -2
  18. method_inputs/a1/BOT_X10_20K/receipts/export_51933433.json +23 -23
  19. method_inputs/a1/BOT_X10_20K/receipts/identity_scan_51933433.json +1 -1
  20. method_inputs/a1/BOT_X10_20K/receipts/open_audit_51933433.json +167 -167
  21. method_inputs/a1/BOT_X10_5K/r00000000/n32/meta.json +2 -2
  22. method_inputs/a1/BOT_X10_5K/r00000001/n32/meta.json +2 -2
  23. method_inputs/a1/BOT_X10_5K/r00000002/n32/meta.json +2 -2
  24. method_inputs/a1/BOT_X10_5K/r00000003/n32/meta.json +2 -2
  25. method_inputs/a1/BOT_X10_5K/r00000004/n32/meta.json +2 -2
  26. method_inputs/a1/BOT_X10_5K/r00000005/n32/meta.json +2 -2
  27. method_inputs/a1/BOT_X10_5K/r00000006/n32/meta.json +2 -2
  28. method_inputs/a1/BOT_X10_5K/r00000007/n32/meta.json +2 -2
  29. method_inputs/a1/BOT_X10_5K/receipts/export_51933159.json +23 -23
  30. method_inputs/a1/BOT_X10_5K/receipts/identity_scan_51933159.json +1 -1
  31. method_inputs/a1/BOT_X10_5K/receipts/open_audit_51933159.json +167 -167
  32. method_inputs/a1/CONST_2K/r00000000/n32/meta.json +2 -2
  33. method_inputs/a1/CONST_2K/r00000001/n32/meta.json +2 -2
  34. method_inputs/a1/CONST_2K/r00000002/n32/meta.json +2 -2
  35. method_inputs/a1/CONST_2K/r00000003/n32/meta.json +2 -2
  36. method_inputs/a1/CONST_2K/r00000004/n32/meta.json +2 -2
  37. method_inputs/a1/CONST_2K/r00000005/n32/meta.json +2 -2
  38. method_inputs/a1/CONST_2K/r00000006/n32/meta.json +2 -2
  39. method_inputs/a1/CONST_2K/r00000007/n32/meta.json +2 -2
  40. method_inputs/a1/CONST_2K/receipts/export_51933476.json +23 -23
  41. method_inputs/a1/CONST_2K/receipts/identity_scan_51933476.json +1 -1
  42. method_inputs/a1/CONST_2K/receipts/open_audit_51933476.json +167 -167
  43. method_inputs/a1/CONST_50K/r00000000/n32/meta.json +2 -2
  44. method_inputs/a1/CONST_50K/r00000001/n32/meta.json +2 -2
  45. method_inputs/a1/CONST_50K/r00000002/n32/meta.json +2 -2
  46. method_inputs/a1/CONST_50K/r00000003/n32/meta.json +2 -2
  47. method_inputs/a1/CONST_50K/r00000004/n32/meta.json +2 -2
  48. method_inputs/a1/CONST_50K/r00000005/n32/meta.json +2 -2
  49. method_inputs/a1/CONST_50K/r00000006/n32/meta.json +2 -2
  50. method_inputs/a1/CONST_50K/r00000007/n32/meta.json +2 -2
method_inputs/a1/BOT_X10_1K/r00000002/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
2
  "S": 57772,
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  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 2,
7
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
8
  "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000002",
@@ -50,7 +50,7 @@
50
  "view.bcf": "2187a5b10e92006c8920d977d64ab69cf55030ba12553f6657f8cfaff2f8ee0f",
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  "view.bcf.csi": "6e39698a2b83d54c2af1db5b7f0b9bf58a4f008861f42e1181b53cdaedbfb64b"
52
  },
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- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "7e788e9aed078cd8d6f10ff85d8c9e0f669e330dce2f8a2068bedb606450729f",
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  "ladder_columns": [
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  23,
 
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  "S": 57772,
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  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 2,
7
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
8
  "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000002",
 
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  "view.bcf": "2187a5b10e92006c8920d977d64ab69cf55030ba12553f6657f8cfaff2f8ee0f",
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  "view.bcf.csi": "6e39698a2b83d54c2af1db5b7f0b9bf58a4f008861f42e1181b53cdaedbfb64b"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "7e788e9aed078cd8d6f10ff85d8c9e0f669e330dce2f8a2068bedb606450729f",
55
  "ladder_columns": [
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  23,
method_inputs/a1/BOT_X10_1K/r00000003/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
2
  "S": 56277,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 3,
7
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
8
  "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000003",
@@ -50,7 +50,7 @@
50
  "view.bcf": "54a9ce62db59a51545693850d04ab9f484e570b8107a6a46343fe78e0d275308",
51
  "view.bcf.csi": "733b5447a0e95127ef21ae920c78d7f5b08e2be59326af5833e0d338bd67583d"
52
  },
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- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "7e788e9aed078cd8d6f10ff85d8c9e0f669e330dce2f8a2068bedb606450729f",
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  "ladder_columns": [
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  35,
 
2
  "S": 56277,
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  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 3,
7
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
8
  "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000003",
 
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  "view.bcf": "54a9ce62db59a51545693850d04ab9f484e570b8107a6a46343fe78e0d275308",
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  "view.bcf.csi": "733b5447a0e95127ef21ae920c78d7f5b08e2be59326af5833e0d338bd67583d"
52
  },
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+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "7e788e9aed078cd8d6f10ff85d8c9e0f669e330dce2f8a2068bedb606450729f",
55
  "ladder_columns": [
56
  35,
method_inputs/a1/BOT_X10_1K/r00000004/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
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  "S": 55503,
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  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
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- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 4,
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  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
8
  "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000004",
@@ -50,7 +50,7 @@
50
  "view.bcf": "fc7e2b4373ec833881df4c40cbb9cbd0be55d305330b67df3f14a868ff0567e8",
51
  "view.bcf.csi": "464cce494daf0b7a396730b612e1319c28e53513fa0dc80e8bcdf4b2111034ac"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "50b76cce2d55af19a51d7f1a1340770703629e1a79725a0ac0218114de100fde",
55
  "ladder_columns": [
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  22,
 
2
  "S": 55503,
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  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 4,
7
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
8
  "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000004",
 
50
  "view.bcf": "fc7e2b4373ec833881df4c40cbb9cbd0be55d305330b67df3f14a868ff0567e8",
51
  "view.bcf.csi": "464cce494daf0b7a396730b612e1319c28e53513fa0dc80e8bcdf4b2111034ac"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "50b76cce2d55af19a51d7f1a1340770703629e1a79725a0ac0218114de100fde",
55
  "ladder_columns": [
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  22,
method_inputs/a1/BOT_X10_1K/r00000005/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
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  "S": 54697,
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  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
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- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 5,
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  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
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  "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000005",
@@ -50,7 +50,7 @@
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  "view.bcf": "6a86e68471f3f857c03564d2392e5f9b7fd798c10c76024c8a259df5641fc8f0",
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  "view.bcf.csi": "4c1cffc5385660c19c372e592bad46ac741d24c33434af0d217efa574298e236"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "50b76cce2d55af19a51d7f1a1340770703629e1a79725a0ac0218114de100fde",
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  "ladder_columns": [
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  8,
 
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  "S": 54697,
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  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
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+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 5,
7
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
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  "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000005",
 
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  "view.bcf": "6a86e68471f3f857c03564d2392e5f9b7fd798c10c76024c8a259df5641fc8f0",
51
  "view.bcf.csi": "4c1cffc5385660c19c372e592bad46ac741d24c33434af0d217efa574298e236"
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  },
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+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "50b76cce2d55af19a51d7f1a1340770703629e1a79725a0ac0218114de100fde",
55
  "ladder_columns": [
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  8,
method_inputs/a1/BOT_X10_1K/r00000006/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
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  "S": 54595,
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  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
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- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 6,
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  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
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  "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000006",
@@ -50,7 +50,7 @@
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  "view.bcf": "8a98f6bc637a8a567e728f05a5bcd7f5a72e71bdace54e9bbcbb81616c062601",
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  "view.bcf.csi": "72c193c123d9f65eb0a7948ea84ec8d3917d274f3beafd9f08bed381777d2801"
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  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "50b76cce2d55af19a51d7f1a1340770703629e1a79725a0ac0218114de100fde",
55
  "ladder_columns": [
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  60,
 
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  "S": 54595,
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  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 6,
7
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
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  "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000006",
 
50
  "view.bcf": "8a98f6bc637a8a567e728f05a5bcd7f5a72e71bdace54e9bbcbb81616c062601",
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  "view.bcf.csi": "72c193c123d9f65eb0a7948ea84ec8d3917d274f3beafd9f08bed381777d2801"
52
  },
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+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "50b76cce2d55af19a51d7f1a1340770703629e1a79725a0ac0218114de100fde",
55
  "ladder_columns": [
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  60,
method_inputs/a1/BOT_X10_1K/r00000007/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
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  "S": 56003,
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  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
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- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 7,
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  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
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  "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000007",
@@ -50,7 +50,7 @@
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  "view.bcf.csi": "0691ee9b3277149e0ef8f87fdcaac66a185dc7f992674118318b6ec300591506"
52
  },
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- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "50b76cce2d55af19a51d7f1a1340770703629e1a79725a0ac0218114de100fde",
55
  "ladder_columns": [
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  31,
 
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  "S": 56003,
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  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
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+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 7,
7
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
8
  "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000007",
 
50
  "view.bcf": "e70f9cbc9ade2eaf9f0d15e917151e957555ad81634526d3859cc790fbaf0554",
51
  "view.bcf.csi": "0691ee9b3277149e0ef8f87fdcaac66a185dc7f992674118318b6ec300591506"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "50b76cce2d55af19a51d7f1a1340770703629e1a79725a0ac0218114de100fde",
55
  "ladder_columns": [
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  31,
method_inputs/a1/BOT_X10_1K/receipts/export_51933154.json CHANGED
@@ -1,25 +1,25 @@
1
  {
2
  "arm": "CLEAN",
3
- "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools",
4
  "dataset": "v2_a1_BOT_X10_1K",
5
  "host": "cn113-35-l",
6
  "identity_scan": {
7
  "hits": 0,
8
  "lines_scanned": 104996,
9
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/identity_scan_51933154.json",
10
- "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl",
11
  "registry_size_bytes": 219776193,
12
- "sha256": "dbef2ab7b039056137f5814e1f22f0cc523c778e9bce0f45640ca2fd51712feb"
13
  },
14
  "job": "51933154",
15
- "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh",
16
  "n": [
17
  32
18
  ],
19
  "open_audit": {
20
- "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/open_audit_51933154.json",
21
  "production_files_opened": [
22
- "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl"
23
  ],
24
  "refused": 0
25
  },
@@ -46,7 +46,7 @@
46
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
47
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
48
  "contig": "region_0",
49
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32",
50
  "files": {
51
  "multihetsep.txt": "a7142f905c9848946b20c399ac2524fd6775208568a0be5ed4ec97e68a7703af",
52
  "phlash_contig.npz": "c78e6a67f1dcbb7b16a63c7526459330066804ef34035fb3e6c8137bf2b489c1",
@@ -54,7 +54,7 @@
54
  "view.bcf": "9272d182358374ed5074455e0ad75ea2a95c6f65ec7fba2f654d4567070ff58e",
55
  "view.bcf.csi": "623dc5eff4262d2158dd2b1e60ef279577e566aa7162f0d7c46fe803fe81a7bc"
56
  },
57
- "meta_sha256": "fa53cc1aab38703e244fef5e0a83c06a855af4a165d312f73610f124d5b24581",
58
  "mu_for_tools": 1.2500000146076218e-08,
59
  "mu_source": "true constant (obs == true in CLEAN)",
60
  "n": 32,
@@ -85,7 +85,7 @@
85
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
86
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
87
  "contig": "region_1",
88
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/n32",
89
  "files": {
90
  "multihetsep.txt": "a085a1f06414cb74512a70adf9118d330491d9df151c9c53c5f8cd1d1b83b045",
91
  "phlash_contig.npz": "0b89f622f5b91e0ad7be0a71ebd1afc4b6ef1d1ce5c5e8dde6d374eb03b36fdf",
@@ -93,7 +93,7 @@
93
  "view.bcf": "9313efb54d5f9c573a27efe5cc372e18ed3722364b6d95d740f17e55d63b7bc8",
94
  "view.bcf.csi": "90d1c365c4108e81e5daf93aa22ee99062ac635499f48b4f330674029c37443a"
95
  },
96
- "meta_sha256": "8476230f213a5fd5a8c8216076bf3128b6d31e6fad05b72b16954eb0900020cb",
97
  "mu_for_tools": 1.2500000146076218e-08,
98
  "mu_source": "true constant (obs == true in CLEAN)",
99
  "n": 32,
@@ -124,7 +124,7 @@
124
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
125
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
126
  "contig": "region_2",
127
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/n32",
128
  "files": {
129
  "multihetsep.txt": "1cdeb281228af7513a602dc5e56c847a9cb76f575065d0cc9b7fdf0e76f6111b",
130
  "phlash_contig.npz": "ce5f5b644dde63f8b76e55c2eae71092ced31c1ba9db6194f13c582392f4399a",
@@ -132,7 +132,7 @@
132
  "view.bcf": "2187a5b10e92006c8920d977d64ab69cf55030ba12553f6657f8cfaff2f8ee0f",
133
  "view.bcf.csi": "6e39698a2b83d54c2af1db5b7f0b9bf58a4f008861f42e1181b53cdaedbfb64b"
134
  },
135
- "meta_sha256": "6c70795e040bc4f120f71195cd36ca0ecb6f5c6079a8ab3e59715db6e3cb040c",
136
  "mu_for_tools": 1.2500000146076218e-08,
137
  "mu_source": "true constant (obs == true in CLEAN)",
138
  "n": 32,
@@ -163,7 +163,7 @@
163
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
164
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
165
  "contig": "region_3",
166
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000003/n32",
167
  "files": {
168
  "multihetsep.txt": "5ed3539810ce49cb7657037071ef090c34f73700ddcb91d412bf4495c4cf80b8",
169
  "phlash_contig.npz": "fb73feb38e9aa047644adf315795ae09aaead19657a3b5f0a790b3c97513aa76",
@@ -171,7 +171,7 @@
171
  "view.bcf": "54a9ce62db59a51545693850d04ab9f484e570b8107a6a46343fe78e0d275308",
172
  "view.bcf.csi": "733b5447a0e95127ef21ae920c78d7f5b08e2be59326af5833e0d338bd67583d"
173
  },
174
- "meta_sha256": "80512f8c9ba377e3446be7124d1cdf67e8a6d19052f552643bf57736cef8350d",
175
  "mu_for_tools": 1.2500000146076218e-08,
176
  "mu_source": "true constant (obs == true in CLEAN)",
177
  "n": 32,
@@ -202,7 +202,7 @@
202
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
203
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
204
  "contig": "region_4",
205
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000004/n32",
206
  "files": {
207
  "multihetsep.txt": "62a9d1e6950cd6b9a7dbfa50fda9a96578820b3dabc1f371015342988eb205c0",
208
  "phlash_contig.npz": "5951266799cfc7361d9e8d16c7d0fc2302486d87af067d1132c302e7fab74f58",
@@ -210,7 +210,7 @@
210
  "view.bcf": "fc7e2b4373ec833881df4c40cbb9cbd0be55d305330b67df3f14a868ff0567e8",
211
  "view.bcf.csi": "464cce494daf0b7a396730b612e1319c28e53513fa0dc80e8bcdf4b2111034ac"
212
  },
213
- "meta_sha256": "e16c89c76179bc452e8b85ba4237ae106e87ea3722dab2764d99fbf7703b0b3d",
214
  "mu_for_tools": 1.2500000146076218e-08,
215
  "mu_source": "true constant (obs == true in CLEAN)",
216
  "n": 32,
@@ -241,7 +241,7 @@
241
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
242
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
243
  "contig": "region_5",
244
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000005/n32",
245
  "files": {
246
  "multihetsep.txt": "d9c2820c986722a569c2c4e80deea002fd6828e3a311457881c3f7313ea3ecf6",
247
  "phlash_contig.npz": "4591468dbf720bedda4d7d398f1fffe38f94e0099b9c0f20396f46320d7db805",
@@ -249,7 +249,7 @@
249
  "view.bcf": "6a86e68471f3f857c03564d2392e5f9b7fd798c10c76024c8a259df5641fc8f0",
250
  "view.bcf.csi": "4c1cffc5385660c19c372e592bad46ac741d24c33434af0d217efa574298e236"
251
  },
252
- "meta_sha256": "1879ba61bb7f602b7c699e9aa8522a0bae9e9dfd424edfa0bfeee7d5599edc40",
253
  "mu_for_tools": 1.2500000146076218e-08,
254
  "mu_source": "true constant (obs == true in CLEAN)",
255
  "n": 32,
@@ -280,7 +280,7 @@
280
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
281
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
282
  "contig": "region_6",
283
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000006/n32",
284
  "files": {
285
  "multihetsep.txt": "31f0274ffc745f9f2e2603e71318320ac7bcaf3fa4cc4f52af540d6b42ce96db",
286
  "phlash_contig.npz": "2bf3accb07a04162028d2e51d09b6127db492046490c3002fa902f8a03b47e17",
@@ -288,7 +288,7 @@
288
  "view.bcf": "8a98f6bc637a8a567e728f05a5bcd7f5a72e71bdace54e9bbcbb81616c062601",
289
  "view.bcf.csi": "72c193c123d9f65eb0a7948ea84ec8d3917d274f3beafd9f08bed381777d2801"
290
  },
291
- "meta_sha256": "6ac4f5bc8d6d40d753cc669791fb7b54ce53b9a5ca70e4a749e2d5826475ec91",
292
  "mu_for_tools": 1.2500000146076218e-08,
293
  "mu_source": "true constant (obs == true in CLEAN)",
294
  "n": 32,
@@ -319,7 +319,7 @@
319
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
320
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
321
  "contig": "region_7",
322
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32",
323
  "files": {
324
  "multihetsep.txt": "1a478595e42cae8a835bba8f0021fd4cce1c24f45009fff6d5ef8bb90348807c",
325
  "phlash_contig.npz": "307890d077cba5d0453f09bcdffed9c2b528fc6cded2a5893c033b07fae63d44",
@@ -327,7 +327,7 @@
327
  "view.bcf": "e70f9cbc9ade2eaf9f0d15e917151e957555ad81634526d3859cc790fbaf0554",
328
  "view.bcf.csi": "0691ee9b3277149e0ef8f87fdcaac66a185dc7f992674118318b6ec300591506"
329
  },
330
- "meta_sha256": "95513577884e55624db4cf6af6b8dbc6671a8ffa931169f3dc179813356ea6b9",
331
  "mu_for_tools": 1.2500000146076218e-08,
332
  "mu_source": "true constant (obs == true in CLEAN)",
333
  "n": 32,
 
1
  {
2
  "arm": "CLEAN",
3
+ "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools",
4
  "dataset": "v2_a1_BOT_X10_1K",
5
  "host": "cn113-35-l",
6
  "identity_scan": {
7
  "hits": 0,
8
  "lines_scanned": 104996,
9
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/identity_scan_51933154.json",
10
+ "registry_path": "$WORK/registry109k/raw_index.jsonl",
11
  "registry_size_bytes": 219776193,
12
+ "sha256": "2e07e40607263c5df3561e58a4946b39054bce3d75cd1c0b4b1d46109276ccae"
13
  },
14
  "job": "51933154",
15
+ "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh",
16
  "n": [
17
  32
18
  ],
19
  "open_audit": {
20
+ "log": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/open_audit_51933154.json",
21
  "production_files_opened": [
22
+ "$WORK/registry109k/raw_index.jsonl"
23
  ],
24
  "refused": 0
25
  },
 
46
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
47
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
48
  "contig": "region_0",
49
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32",
50
  "files": {
51
  "multihetsep.txt": "a7142f905c9848946b20c399ac2524fd6775208568a0be5ed4ec97e68a7703af",
52
  "phlash_contig.npz": "c78e6a67f1dcbb7b16a63c7526459330066804ef34035fb3e6c8137bf2b489c1",
 
54
  "view.bcf": "9272d182358374ed5074455e0ad75ea2a95c6f65ec7fba2f654d4567070ff58e",
55
  "view.bcf.csi": "623dc5eff4262d2158dd2b1e60ef279577e566aa7162f0d7c46fe803fe81a7bc"
56
  },
57
+ "meta_sha256": "557bc98188008017dcff1cf561019cd3d2f1ec4f95716875911777f740dcb63c",
58
  "mu_for_tools": 1.2500000146076218e-08,
59
  "mu_source": "true constant (obs == true in CLEAN)",
60
  "n": 32,
 
85
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
86
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
87
  "contig": "region_1",
88
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/n32",
89
  "files": {
90
  "multihetsep.txt": "a085a1f06414cb74512a70adf9118d330491d9df151c9c53c5f8cd1d1b83b045",
91
  "phlash_contig.npz": "0b89f622f5b91e0ad7be0a71ebd1afc4b6ef1d1ce5c5e8dde6d374eb03b36fdf",
 
93
  "view.bcf": "9313efb54d5f9c573a27efe5cc372e18ed3722364b6d95d740f17e55d63b7bc8",
94
  "view.bcf.csi": "90d1c365c4108e81e5daf93aa22ee99062ac635499f48b4f330674029c37443a"
95
  },
96
+ "meta_sha256": "dba13b945c8a2d4742e9f291eaa59427466b79247c36576599759c6ed0f3f54d",
97
  "mu_for_tools": 1.2500000146076218e-08,
98
  "mu_source": "true constant (obs == true in CLEAN)",
99
  "n": 32,
 
124
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
125
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
126
  "contig": "region_2",
127
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/n32",
128
  "files": {
129
  "multihetsep.txt": "1cdeb281228af7513a602dc5e56c847a9cb76f575065d0cc9b7fdf0e76f6111b",
130
  "phlash_contig.npz": "ce5f5b644dde63f8b76e55c2eae71092ced31c1ba9db6194f13c582392f4399a",
 
132
  "view.bcf": "2187a5b10e92006c8920d977d64ab69cf55030ba12553f6657f8cfaff2f8ee0f",
133
  "view.bcf.csi": "6e39698a2b83d54c2af1db5b7f0b9bf58a4f008861f42e1181b53cdaedbfb64b"
134
  },
135
+ "meta_sha256": "e66a536403f6dad296d8c3a010c977625248c42114dbbeddd34defd3630a97f7",
136
  "mu_for_tools": 1.2500000146076218e-08,
137
  "mu_source": "true constant (obs == true in CLEAN)",
138
  "n": 32,
 
163
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
164
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
165
  "contig": "region_3",
166
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000003/n32",
167
  "files": {
168
  "multihetsep.txt": "5ed3539810ce49cb7657037071ef090c34f73700ddcb91d412bf4495c4cf80b8",
169
  "phlash_contig.npz": "fb73feb38e9aa047644adf315795ae09aaead19657a3b5f0a790b3c97513aa76",
 
171
  "view.bcf": "54a9ce62db59a51545693850d04ab9f484e570b8107a6a46343fe78e0d275308",
172
  "view.bcf.csi": "733b5447a0e95127ef21ae920c78d7f5b08e2be59326af5833e0d338bd67583d"
173
  },
174
+ "meta_sha256": "29a6d671554da2d5caf1dc4d5d323719f56c8f6e12799b80f63af79303fd9e43",
175
  "mu_for_tools": 1.2500000146076218e-08,
176
  "mu_source": "true constant (obs == true in CLEAN)",
177
  "n": 32,
 
202
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
203
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
204
  "contig": "region_4",
205
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000004/n32",
206
  "files": {
207
  "multihetsep.txt": "62a9d1e6950cd6b9a7dbfa50fda9a96578820b3dabc1f371015342988eb205c0",
208
  "phlash_contig.npz": "5951266799cfc7361d9e8d16c7d0fc2302486d87af067d1132c302e7fab74f58",
 
210
  "view.bcf": "fc7e2b4373ec833881df4c40cbb9cbd0be55d305330b67df3f14a868ff0567e8",
211
  "view.bcf.csi": "464cce494daf0b7a396730b612e1319c28e53513fa0dc80e8bcdf4b2111034ac"
212
  },
213
+ "meta_sha256": "87ea71dedadb7412c1acc41be301a7a89a998c1e4d73b3796e271e0d93e77cd6",
214
  "mu_for_tools": 1.2500000146076218e-08,
215
  "mu_source": "true constant (obs == true in CLEAN)",
216
  "n": 32,
 
241
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
242
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
243
  "contig": "region_5",
244
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000005/n32",
245
  "files": {
246
  "multihetsep.txt": "d9c2820c986722a569c2c4e80deea002fd6828e3a311457881c3f7313ea3ecf6",
247
  "phlash_contig.npz": "4591468dbf720bedda4d7d398f1fffe38f94e0099b9c0f20396f46320d7db805",
 
249
  "view.bcf": "6a86e68471f3f857c03564d2392e5f9b7fd798c10c76024c8a259df5641fc8f0",
250
  "view.bcf.csi": "4c1cffc5385660c19c372e592bad46ac741d24c33434af0d217efa574298e236"
251
  },
252
+ "meta_sha256": "f3c3d5b8083e61929e2a91b2b1eae854ff57198729a24500cc7027628eb3a5aa",
253
  "mu_for_tools": 1.2500000146076218e-08,
254
  "mu_source": "true constant (obs == true in CLEAN)",
255
  "n": 32,
 
280
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
281
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
282
  "contig": "region_6",
283
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000006/n32",
284
  "files": {
285
  "multihetsep.txt": "31f0274ffc745f9f2e2603e71318320ac7bcaf3fa4cc4f52af540d6b42ce96db",
286
  "phlash_contig.npz": "2bf3accb07a04162028d2e51d09b6127db492046490c3002fa902f8a03b47e17",
 
288
  "view.bcf": "8a98f6bc637a8a567e728f05a5bcd7f5a72e71bdace54e9bbcbb81616c062601",
289
  "view.bcf.csi": "72c193c123d9f65eb0a7948ea84ec8d3917d274f3beafd9f08bed381777d2801"
290
  },
291
+ "meta_sha256": "f10096e1f158b87b68c5f5e18074b7afcf647577f3faf8c6899c5b8a02b7c6e7",
292
  "mu_for_tools": 1.2500000146076218e-08,
293
  "mu_source": "true constant (obs == true in CLEAN)",
294
  "n": 32,
 
319
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
320
  "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e",
321
  "contig": "region_7",
322
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32",
323
  "files": {
324
  "multihetsep.txt": "1a478595e42cae8a835bba8f0021fd4cce1c24f45009fff6d5ef8bb90348807c",
325
  "phlash_contig.npz": "307890d077cba5d0453f09bcdffed9c2b528fc6cded2a5893c033b07fae63d44",
 
327
  "view.bcf": "e70f9cbc9ade2eaf9f0d15e917151e957555ad81634526d3859cc790fbaf0554",
328
  "view.bcf.csi": "0691ee9b3277149e0ef8f87fdcaac66a185dc7f992674118318b6ec300591506"
329
  },
330
+ "meta_sha256": "cb14ded9394102895f32ba59b6c9e88ff8735f30827f488bd21d7854920a9d5b",
331
  "mu_for_tools": 1.2500000146076218e-08,
332
  "mu_source": "true constant (obs == true in CLEAN)",
333
  "n": 32,
method_inputs/a1/BOT_X10_1K/receipts/identity_scan_51933154.json CHANGED
@@ -6,7 +6,7 @@
6
  "plan_sha256s": [
7
  "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc"
8
  ],
9
- "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl",
10
  "registry_size_bytes": 219776193,
11
  "schema": "bench_h2h.registry_identity_scan.v1",
12
  "utc": "2026-09-16T10:58:25Z"
 
6
  "plan_sha256s": [
7
  "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc"
8
  ],
9
+ "registry_path": "$WORK/registry109k/raw_index.jsonl",
10
  "registry_size_bytes": 219776193,
11
  "schema": "bench_h2h.registry_identity_scan.v1",
12
  "utc": "2026-09-16T10:58:25Z"
method_inputs/a1/BOT_X10_1K/receipts/open_audit_51933154.json CHANGED
@@ -2,671 +2,671 @@
2
  "opened": [
3
  {
4
  "mode": "r",
5
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.done.json"
6
  },
7
  {
8
  "mode": "r",
9
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.done.json"
10
  },
11
  {
12
  "mode": "r",
13
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000002.done.json"
14
  },
15
  {
16
  "mode": "r",
17
- "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl"
18
  },
19
  {
20
  "mode": "w",
21
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/identity_scan_51933154.json"
22
  },
23
  {
24
  "mode": "r",
25
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.done.json"
26
  },
27
  {
28
  "mode": "r",
29
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz"
30
  },
31
  {
32
  "mode": "r",
33
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz"
34
  },
35
  {
36
  "mode": "r",
37
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/sample_identities.jsonl"
38
  },
39
  {
40
  "mode": "r",
41
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz"
42
  },
43
  {
44
  "mode": "r",
45
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz"
46
  },
47
  {
48
  "mode": "w",
49
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/view.vcf"
50
  },
51
  {
52
  "mode": "w",
53
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/phlash_contig.npz"
54
  },
55
  {
56
  "mode": "w",
57
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/sfs_unfolded.npy"
58
  },
59
  {
60
  "mode": "w",
61
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/multihetsep.txt"
62
  },
63
  {
64
  "mode": "r",
65
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/view.bcf"
66
  },
67
  {
68
  "mode": "r",
69
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/phlash_contig.npz"
70
  },
71
  {
72
  "mode": "r",
73
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/sfs_unfolded.npy"
74
  },
75
  {
76
  "mode": "w",
77
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/meta.json"
78
  },
79
  {
80
  "mode": "r",
81
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32/phlash_contig.npz"
82
  },
83
  {
84
  "mode": "r",
85
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32/sfs_unfolded.npy"
86
  },
87
  {
88
  "mode": "r",
89
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32/phlash_contig.npz"
90
  },
91
  {
92
  "mode": "r",
93
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32/sfs_unfolded.npy"
94
  },
95
  {
96
  "mode": "r",
97
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32/view.bcf"
98
  },
99
  {
100
  "mode": "w",
101
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/v0_n32.json"
102
  },
103
  {
104
  "mode": "r",
105
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.done.json"
106
  },
107
  {
108
  "mode": "r",
109
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz"
110
  },
111
  {
112
  "mode": "r",
113
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz"
114
  },
115
  {
116
  "mode": "r",
117
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/sample_identities.jsonl"
118
  },
119
  {
120
  "mode": "r",
121
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz"
122
  },
123
  {
124
  "mode": "r",
125
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz"
126
  },
127
  {
128
  "mode": "w",
129
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/.n32.tmp-235nd7rv/view.vcf"
130
  },
131
  {
132
  "mode": "w",
133
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/.n32.tmp-235nd7rv/phlash_contig.npz"
134
  },
135
  {
136
  "mode": "w",
137
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/.n32.tmp-235nd7rv/sfs_unfolded.npy"
138
  },
139
  {
140
  "mode": "w",
141
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/.n32.tmp-235nd7rv/multihetsep.txt"
142
  },
143
  {
144
  "mode": "r",
145
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/.n32.tmp-235nd7rv/view.bcf"
146
  },
147
  {
148
  "mode": "r",
149
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/.n32.tmp-235nd7rv/phlash_contig.npz"
150
  },
151
  {
152
  "mode": "r",
153
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/.n32.tmp-235nd7rv/sfs_unfolded.npy"
154
  },
155
  {
156
  "mode": "w",
157
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/.n32.tmp-235nd7rv/meta.json"
158
  },
159
  {
160
  "mode": "r",
161
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/n32/phlash_contig.npz"
162
  },
163
  {
164
  "mode": "r",
165
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/n32/sfs_unfolded.npy"
166
  },
167
  {
168
  "mode": "r",
169
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/n32/phlash_contig.npz"
170
  },
171
  {
172
  "mode": "r",
173
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/n32/sfs_unfolded.npy"
174
  },
175
  {
176
  "mode": "r",
177
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/n32/view.bcf"
178
  },
179
  {
180
  "mode": "w",
181
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/v0_n32.json"
182
  },
183
  {
184
  "mode": "r",
185
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.done.json"
186
  },
187
  {
188
  "mode": "r",
189
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz"
190
  },
191
  {
192
  "mode": "r",
193
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz"
194
  },
195
  {
196
  "mode": "r",
197
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/sample_identities.jsonl"
198
  },
199
  {
200
  "mode": "r",
201
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz"
202
  },
203
  {
204
  "mode": "r",
205
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz"
206
  },
207
  {
208
  "mode": "w",
209
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/.n32.tmp-ywduybgw/view.vcf"
210
  },
211
  {
212
  "mode": "w",
213
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/.n32.tmp-ywduybgw/phlash_contig.npz"
214
  },
215
  {
216
  "mode": "w",
217
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/.n32.tmp-ywduybgw/sfs_unfolded.npy"
218
  },
219
  {
220
  "mode": "w",
221
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/.n32.tmp-ywduybgw/multihetsep.txt"
222
  },
223
  {
224
  "mode": "r",
225
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/.n32.tmp-ywduybgw/view.bcf"
226
  },
227
  {
228
  "mode": "r",
229
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/.n32.tmp-ywduybgw/phlash_contig.npz"
230
  },
231
  {
232
  "mode": "r",
233
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/.n32.tmp-ywduybgw/sfs_unfolded.npy"
234
  },
235
  {
236
  "mode": "w",
237
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/.n32.tmp-ywduybgw/meta.json"
238
  },
239
  {
240
  "mode": "r",
241
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/n32/phlash_contig.npz"
242
  },
243
  {
244
  "mode": "r",
245
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/n32/sfs_unfolded.npy"
246
  },
247
  {
248
  "mode": "r",
249
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/n32/phlash_contig.npz"
250
  },
251
  {
252
  "mode": "r",
253
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/n32/sfs_unfolded.npy"
254
  },
255
  {
256
  "mode": "r",
257
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/n32/view.bcf"
258
  },
259
  {
260
  "mode": "w",
261
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/v0_n32.json"
262
  },
263
  {
264
  "mode": "r",
265
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.done.json"
266
  },
267
  {
268
  "mode": "r",
269
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz"
270
  },
271
  {
272
  "mode": "r",
273
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz"
274
  },
275
  {
276
  "mode": "r",
277
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/sample_identities.jsonl"
278
  },
279
  {
280
  "mode": "r",
281
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz"
282
  },
283
  {
284
  "mode": "r",
285
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz"
286
  },
287
  {
288
  "mode": "w",
289
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000003/.n32.tmp-o5gwsu22/view.vcf"
290
  },
291
  {
292
  "mode": "w",
293
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294
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295
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296
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297
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298
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299
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300
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301
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302
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303
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304
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305
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306
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307
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308
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309
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310
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311
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312
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313
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314
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315
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316
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317
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318
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319
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320
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321
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000003/n32/phlash_contig.npz"
322
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323
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324
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325
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326
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327
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328
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329
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330
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331
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332
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333
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334
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335
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336
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337
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338
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339
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340
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341
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342
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343
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344
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345
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346
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347
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348
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349
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz"
350
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351
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352
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353
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz"
354
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355
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356
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357
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/sample_identities.jsonl"
358
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359
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360
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361
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362
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363
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364
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365
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366
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367
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368
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369
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370
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371
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372
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373
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374
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375
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376
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377
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378
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379
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380
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381
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000004/.n32.tmp-tx5lkxrq/multihetsep.txt"
382
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383
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384
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385
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386
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387
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388
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389
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390
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391
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392
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393
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394
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395
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396
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397
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398
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399
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400
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401
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402
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403
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404
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405
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406
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407
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408
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409
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410
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411
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412
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413
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414
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415
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416
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417
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418
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419
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420
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421
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422
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423
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424
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425
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426
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427
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428
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429
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430
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431
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432
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433
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434
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435
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436
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437
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438
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439
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440
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441
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442
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443
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444
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445
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446
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447
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448
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449
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450
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451
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452
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453
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454
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455
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456
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457
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458
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459
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460
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461
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462
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463
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464
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465
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466
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467
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468
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469
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470
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471
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472
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473
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474
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475
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476
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477
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478
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479
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480
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481
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482
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483
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484
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485
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486
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487
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488
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489
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490
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491
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492
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493
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494
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495
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496
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497
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498
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499
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500
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501
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502
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503
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504
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505
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506
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507
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508
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509
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510
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511
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512
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513
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514
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515
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516
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517
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518
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519
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520
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521
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522
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523
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524
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525
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526
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527
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528
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529
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530
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531
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532
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533
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534
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535
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536
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537
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538
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539
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540
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541
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542
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543
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544
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545
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546
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547
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548
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549
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550
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551
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552
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553
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554
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555
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556
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557
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558
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559
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560
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561
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562
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563
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564
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565
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566
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567
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568
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569
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570
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571
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572
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573
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574
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575
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576
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577
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578
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579
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580
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581
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582
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583
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584
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585
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586
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587
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588
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589
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590
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591
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592
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593
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594
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595
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596
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597
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598
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599
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600
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601
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602
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603
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604
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605
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606
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607
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608
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609
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610
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611
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612
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613
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614
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615
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616
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617
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618
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619
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620
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621
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622
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623
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624
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625
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626
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627
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628
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629
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630
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631
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632
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633
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668
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85
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105
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110
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117
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120
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124
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136
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140
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146
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158
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162
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163
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165
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171
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183
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185
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189
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192
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193
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196
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197
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198
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200
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201
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202
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203
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204
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206
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210
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214
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215
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216
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218
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224
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232
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235
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236
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238
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240
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242
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243
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248
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249
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263
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269
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273
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277
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278
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280
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282
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284
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286
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287
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288
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289
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290
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292
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294
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298
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299
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300
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302
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304
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310
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311
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312
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314
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315
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316
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317
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318
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319
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320
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343
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350
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357
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358
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359
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360
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361
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362
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363
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364
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365
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366
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367
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368
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369
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370
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371
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372
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374
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375
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376
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377
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378
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379
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380
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381
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383
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386
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387
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390
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391
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394
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395
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396
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397
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398
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399
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400
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401
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402
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403
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404
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405
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406
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407
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408
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409
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410
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411
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412
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413
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414
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415
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416
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417
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418
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419
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420
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421
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422
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423
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424
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425
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426
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427
  {
428
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429
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430
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431
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432
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433
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434
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435
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436
  "mode": "r",
437
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438
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439
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440
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441
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442
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443
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444
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448
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451
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452
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453
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454
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455
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456
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457
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458
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459
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460
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464
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467
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468
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470
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471
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472
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474
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475
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476
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477
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478
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479
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480
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481
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482
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483
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484
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485
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486
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487
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488
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489
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490
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491
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492
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494
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495
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496
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500
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502
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503
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504
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505
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506
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507
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508
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509
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510
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511
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512
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514
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515
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516
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517
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518
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520
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521
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530
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531
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532
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533
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535
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536
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539
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543
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544
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587
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639
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640
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641
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643
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644
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648
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+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 1,
7
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
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50
  "view.bcf": "eee0be91315ac0b1d9b6d689a67099869f4d146b97e3bc7d9b9b5124279070c4",
51
  "view.bcf.csi": "9c05d1bb27a5bad4ffb99c789050b87c68166d4533bcc5dd5aa5c5a376e7aac4"
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  },
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+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "5982ee7d2311a2af5d0945dadba2683425709d09c32319e475c5d148fa945aa4",
55
  "ladder_columns": [
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  16,
method_inputs/a1/BOT_X10_20K/r00000002/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
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3
  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
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@@ -50,7 +50,7 @@
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  },
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- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "5982ee7d2311a2af5d0945dadba2683425709d09c32319e475c5d148fa945aa4",
55
  "ladder_columns": [
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  23,
 
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  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 2,
7
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
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50
  "view.bcf": "333e58de9e2bdc3179c0288a836f72e344a538073a7024a0a9e691c32b7b5bc2",
51
  "view.bcf.csi": "03c8ec0f8d5aa6d0818f873690cdd9a6aff8c06dfe45a83b7474c1a1702b68c8"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "5982ee7d2311a2af5d0945dadba2683425709d09c32319e475c5d148fa945aa4",
55
  "ladder_columns": [
56
  23,
method_inputs/a1/BOT_X10_20K/r00000003/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
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  "S": 56384,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 3,
7
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
8
  "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000003",
@@ -50,7 +50,7 @@
50
  "view.bcf": "286b4f860805ca80ce9835d665be2ff72995733b15e6938a3e14dfcf6a04880d",
51
  "view.bcf.csi": "079e1cde6dd98a3373248f1bb9f4c0649f1be8a39c733b7c48b2fc6455e6ea03"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "5982ee7d2311a2af5d0945dadba2683425709d09c32319e475c5d148fa945aa4",
55
  "ladder_columns": [
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  35,
 
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 3,
7
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
8
  "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000003",
 
50
  "view.bcf": "286b4f860805ca80ce9835d665be2ff72995733b15e6938a3e14dfcf6a04880d",
51
  "view.bcf.csi": "079e1cde6dd98a3373248f1bb9f4c0649f1be8a39c733b7c48b2fc6455e6ea03"
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  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "5982ee7d2311a2af5d0945dadba2683425709d09c32319e475c5d148fa945aa4",
55
  "ladder_columns": [
56
  35,
method_inputs/a1/BOT_X10_20K/r00000004/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
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  "S": 56646,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 4,
7
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
8
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@@ -50,7 +50,7 @@
50
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51
  "view.bcf.csi": "3fa1bba665c8e73d02ec148cd1b4ece1ed7a2a5e3e007fa14fcf1010c5c58430"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "417fa3697126c437b38f11ad875cbab69a1ee5f7139e792ca3c1daa90c6c070d",
55
  "ladder_columns": [
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  22,
 
2
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3
  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 4,
7
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
8
  "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000004",
 
50
  "view.bcf": "8ef94150f12c71524fe807024323b6655e8757982119259a6fbc6908055aeb27",
51
  "view.bcf.csi": "3fa1bba665c8e73d02ec148cd1b4ece1ed7a2a5e3e007fa14fcf1010c5c58430"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "417fa3697126c437b38f11ad875cbab69a1ee5f7139e792ca3c1daa90c6c070d",
55
  "ladder_columns": [
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  22,
method_inputs/a1/BOT_X10_20K/r00000005/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
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3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 5,
7
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
8
  "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000005",
@@ -50,7 +50,7 @@
50
  "view.bcf": "4082571624f96746a2901149d5d8ffdc9986eea30a04bc2f82f9983a9c0d6e15",
51
  "view.bcf.csi": "622dd470c86461759e47369790d14d511587f982ba61f0ba97cc0d4ace67f522"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "417fa3697126c437b38f11ad875cbab69a1ee5f7139e792ca3c1daa90c6c070d",
55
  "ladder_columns": [
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  8,
 
2
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3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 5,
7
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
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  "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000005",
 
50
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51
  "view.bcf.csi": "622dd470c86461759e47369790d14d511587f982ba61f0ba97cc0d4ace67f522"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "417fa3697126c437b38f11ad875cbab69a1ee5f7139e792ca3c1daa90c6c070d",
55
  "ladder_columns": [
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  8,
method_inputs/a1/BOT_X10_20K/r00000006/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
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3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 6,
7
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
8
  "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000006",
@@ -50,7 +50,7 @@
50
  "view.bcf": "56ad35f69389ff6acaff99b0111404cfc541c9153e884a54438b310aaf7bdc18",
51
  "view.bcf.csi": "00ec393e34e3b570355998f4be73337242381c3fb5b0126c1527e3ca70460fc7"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "417fa3697126c437b38f11ad875cbab69a1ee5f7139e792ca3c1daa90c6c070d",
55
  "ladder_columns": [
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  60,
 
2
  "S": 56825,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 6,
7
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
8
  "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000006",
 
50
  "view.bcf": "56ad35f69389ff6acaff99b0111404cfc541c9153e884a54438b310aaf7bdc18",
51
  "view.bcf.csi": "00ec393e34e3b570355998f4be73337242381c3fb5b0126c1527e3ca70460fc7"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "417fa3697126c437b38f11ad875cbab69a1ee5f7139e792ca3c1daa90c6c070d",
55
  "ladder_columns": [
56
  60,
method_inputs/a1/BOT_X10_20K/r00000007/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
2
  "S": 57761,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
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- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 7,
7
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
8
  "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000007",
@@ -50,7 +50,7 @@
50
  "view.bcf": "db3b9e29245475a42678f80740243ea9222c83ce0bbf0487bdb51953c6d9c763",
51
  "view.bcf.csi": "9b3b56d2e4020429a70e8bc80cb6fe0d4c3a1e8c988da259eeeb18f5bbf01995"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "417fa3697126c437b38f11ad875cbab69a1ee5f7139e792ca3c1daa90c6c070d",
55
  "ladder_columns": [
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  31,
 
2
  "S": 57761,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 7,
7
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
8
  "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000007",
 
50
  "view.bcf": "db3b9e29245475a42678f80740243ea9222c83ce0bbf0487bdb51953c6d9c763",
51
  "view.bcf.csi": "9b3b56d2e4020429a70e8bc80cb6fe0d4c3a1e8c988da259eeeb18f5bbf01995"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "417fa3697126c437b38f11ad875cbab69a1ee5f7139e792ca3c1daa90c6c070d",
55
  "ladder_columns": [
56
  31,
method_inputs/a1/BOT_X10_20K/receipts/export_51933433.json CHANGED
@@ -1,25 +1,25 @@
1
  {
2
  "arm": "CLEAN",
3
- "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools",
4
  "dataset": "v2_a1_BOT_X10_20K",
5
  "host": "cn604-14",
6
  "identity_scan": {
7
  "hits": 0,
8
  "lines_scanned": 104996,
9
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/identity_scan_51933433.json",
10
- "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl",
11
  "registry_size_bytes": 219776193,
12
- "sha256": "92d9f52190f32a81bf95586ee5a60e11b20a898fdd260e45dba5b0fb119c9a88"
13
  },
14
  "job": "51933433",
15
- "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh",
16
  "n": [
17
  32
18
  ],
19
  "open_audit": {
20
- "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/open_audit_51933433.json",
21
  "production_files_opened": [
22
- "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl"
23
  ],
24
  "refused": 0
25
  },
@@ -46,7 +46,7 @@
46
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
47
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
48
  "contig": "region_0",
49
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/n32",
50
  "files": {
51
  "multihetsep.txt": "0a9f1f378d6778bc804f53a4be4254f51cb039b86ea0a397b723a994db310aba",
52
  "phlash_contig.npz": "ad93c31866ae1ae9607edacf7f545f518e479c01bae4df27c19a706ec1542569",
@@ -54,7 +54,7 @@
54
  "view.bcf": "fa472ff2063de525c9dbeb8904899a1790de0f2f7b3037cbf2ff62f65c4f4d12",
55
  "view.bcf.csi": "beb928c5913726216c4d4de34d23398b12ce977e803e182f553808cad2166666"
56
  },
57
- "meta_sha256": "4218a1731d92448f8649ffec46db3bf7220e54db1f35a99971b6846ac05ffb3f",
58
  "mu_for_tools": 1.2500000146076218e-08,
59
  "mu_source": "true constant (obs == true in CLEAN)",
60
  "n": 32,
@@ -85,7 +85,7 @@
85
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
86
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
87
  "contig": "region_1",
88
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/n32",
89
  "files": {
90
  "multihetsep.txt": "c869d03c0c64bc862f497c16a872146296dd7ba1577550ff7a7229d434a835af",
91
  "phlash_contig.npz": "6b0ff70bbe479d154238c5339ac8531d21a4c9d82c445014a08d56241d38929b",
@@ -93,7 +93,7 @@
93
  "view.bcf": "eee0be91315ac0b1d9b6d689a67099869f4d146b97e3bc7d9b9b5124279070c4",
94
  "view.bcf.csi": "9c05d1bb27a5bad4ffb99c789050b87c68166d4533bcc5dd5aa5c5a376e7aac4"
95
  },
96
- "meta_sha256": "dc9cc2f14b2bf7ab27ab74215a1083a7a7c9f4e92e54a66e010f6fd99539719b",
97
  "mu_for_tools": 1.2500000146076218e-08,
98
  "mu_source": "true constant (obs == true in CLEAN)",
99
  "n": 32,
@@ -124,7 +124,7 @@
124
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
125
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
126
  "contig": "region_2",
127
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/n32",
128
  "files": {
129
  "multihetsep.txt": "aab048a016dc6640ee1ec187f35edd7b8b3d8283f0370503fa568fdb1c1190cc",
130
  "phlash_contig.npz": "945322de1a4c42aa7980caefde9fe60433b25f902db3f33b45d49abc26e7fd55",
@@ -132,7 +132,7 @@
132
  "view.bcf": "333e58de9e2bdc3179c0288a836f72e344a538073a7024a0a9e691c32b7b5bc2",
133
  "view.bcf.csi": "03c8ec0f8d5aa6d0818f873690cdd9a6aff8c06dfe45a83b7474c1a1702b68c8"
134
  },
135
- "meta_sha256": "7da29144f4af2353866b54f8b9e7352b2b3831f6dd9f07627250a99a0af981c9",
136
  "mu_for_tools": 1.2500000146076218e-08,
137
  "mu_source": "true constant (obs == true in CLEAN)",
138
  "n": 32,
@@ -163,7 +163,7 @@
163
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
164
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
165
  "contig": "region_3",
166
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000003/n32",
167
  "files": {
168
  "multihetsep.txt": "c87b35706662a3f60205710cb728ca502ac5d0df3d17dde7491d7f6c50c6f60a",
169
  "phlash_contig.npz": "5cf06460979051735777e43d64567ecf7404878f2c8c6e4708a3e575aa486950",
@@ -171,7 +171,7 @@
171
  "view.bcf": "286b4f860805ca80ce9835d665be2ff72995733b15e6938a3e14dfcf6a04880d",
172
  "view.bcf.csi": "079e1cde6dd98a3373248f1bb9f4c0649f1be8a39c733b7c48b2fc6455e6ea03"
173
  },
174
- "meta_sha256": "03b924611f526ff5018d9fd5e0d815c6d41c9e6dfd4c4306c781879f59d02526",
175
  "mu_for_tools": 1.2500000146076218e-08,
176
  "mu_source": "true constant (obs == true in CLEAN)",
177
  "n": 32,
@@ -202,7 +202,7 @@
202
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
203
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
204
  "contig": "region_4",
205
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000004/n32",
206
  "files": {
207
  "multihetsep.txt": "d7418609508e4215964fe270b8eceaa1fbcc9acba8c53428ceca605564a4dc35",
208
  "phlash_contig.npz": "50ef19132a7a7c060a70994f4c873368e4fb810ecd48c3def67eb895fec77c66",
@@ -210,7 +210,7 @@
210
  "view.bcf": "8ef94150f12c71524fe807024323b6655e8757982119259a6fbc6908055aeb27",
211
  "view.bcf.csi": "3fa1bba665c8e73d02ec148cd1b4ece1ed7a2a5e3e007fa14fcf1010c5c58430"
212
  },
213
- "meta_sha256": "068a078cae688d36b78cf89318cf377a6b13ac1f5ca38f4d1c42e705ca4a5d6d",
214
  "mu_for_tools": 1.2500000146076218e-08,
215
  "mu_source": "true constant (obs == true in CLEAN)",
216
  "n": 32,
@@ -241,7 +241,7 @@
241
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
242
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
243
  "contig": "region_5",
244
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000005/n32",
245
  "files": {
246
  "multihetsep.txt": "db8237e622bfc529bf960eda5cd5fc56976531d76d0735ac38376f437d18316a",
247
  "phlash_contig.npz": "0ae5906fc2d51f586f511b3f9041a6d058f5ffad1c5c02d744990900e9251d72",
@@ -249,7 +249,7 @@
249
  "view.bcf": "4082571624f96746a2901149d5d8ffdc9986eea30a04bc2f82f9983a9c0d6e15",
250
  "view.bcf.csi": "622dd470c86461759e47369790d14d511587f982ba61f0ba97cc0d4ace67f522"
251
  },
252
- "meta_sha256": "66d538aec74da71a8b15f3bbc0d5617aee05fb3347bc5ddbbc49a6b32600cf88",
253
  "mu_for_tools": 1.2500000146076218e-08,
254
  "mu_source": "true constant (obs == true in CLEAN)",
255
  "n": 32,
@@ -280,7 +280,7 @@
280
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
281
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
282
  "contig": "region_6",
283
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/n32",
284
  "files": {
285
  "multihetsep.txt": "229003868d9cf6f240d13abe473337eb3f32cbd6418c615a386ed4c8204ab1ec",
286
  "phlash_contig.npz": "cd0e8f1f083ca0370c6c81b97327ba912c1aca914e2ef6a4494fdd8c533e8955",
@@ -288,7 +288,7 @@
288
  "view.bcf": "56ad35f69389ff6acaff99b0111404cfc541c9153e884a54438b310aaf7bdc18",
289
  "view.bcf.csi": "00ec393e34e3b570355998f4be73337242381c3fb5b0126c1527e3ca70460fc7"
290
  },
291
- "meta_sha256": "64f39a414a97a90ac5700947c1f2ce5338d4c8f7802947453c90659ed5e880df",
292
  "mu_for_tools": 1.2500000146076218e-08,
293
  "mu_source": "true constant (obs == true in CLEAN)",
294
  "n": 32,
@@ -319,7 +319,7 @@
319
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
320
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
321
  "contig": "region_7",
322
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32",
323
  "files": {
324
  "multihetsep.txt": "4b2bd6d633a7c5b2b5a81c61004dbb8ac820c3afbad89a94877d23af190a1320",
325
  "phlash_contig.npz": "b589edbf54c7584c8197faa60144aac4201de850b156e6f654cb8c6198313ded",
@@ -327,7 +327,7 @@
327
  "view.bcf": "db3b9e29245475a42678f80740243ea9222c83ce0bbf0487bdb51953c6d9c763",
328
  "view.bcf.csi": "9b3b56d2e4020429a70e8bc80cb6fe0d4c3a1e8c988da259eeeb18f5bbf01995"
329
  },
330
- "meta_sha256": "dfcf4aa6291faaf30adff5acb5f627be1623cf36fcd7317a0d2c426ad88a7081",
331
  "mu_for_tools": 1.2500000146076218e-08,
332
  "mu_source": "true constant (obs == true in CLEAN)",
333
  "n": 32,
 
1
  {
2
  "arm": "CLEAN",
3
+ "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools",
4
  "dataset": "v2_a1_BOT_X10_20K",
5
  "host": "cn604-14",
6
  "identity_scan": {
7
  "hits": 0,
8
  "lines_scanned": 104996,
9
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/identity_scan_51933433.json",
10
+ "registry_path": "$WORK/registry109k/raw_index.jsonl",
11
  "registry_size_bytes": 219776193,
12
+ "sha256": "6d238f2385e29f6540a3106b08ed120405b0240e9b3badbd5405cfd00178e5b6"
13
  },
14
  "job": "51933433",
15
+ "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh",
16
  "n": [
17
  32
18
  ],
19
  "open_audit": {
20
+ "log": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/open_audit_51933433.json",
21
  "production_files_opened": [
22
+ "$WORK/registry109k/raw_index.jsonl"
23
  ],
24
  "refused": 0
25
  },
 
46
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
47
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
48
  "contig": "region_0",
49
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/n32",
50
  "files": {
51
  "multihetsep.txt": "0a9f1f378d6778bc804f53a4be4254f51cb039b86ea0a397b723a994db310aba",
52
  "phlash_contig.npz": "ad93c31866ae1ae9607edacf7f545f518e479c01bae4df27c19a706ec1542569",
 
54
  "view.bcf": "fa472ff2063de525c9dbeb8904899a1790de0f2f7b3037cbf2ff62f65c4f4d12",
55
  "view.bcf.csi": "beb928c5913726216c4d4de34d23398b12ce977e803e182f553808cad2166666"
56
  },
57
+ "meta_sha256": "2925594af264e278c8d6922c5a4dd955c554457d74861df11df6474e8d015bbd",
58
  "mu_for_tools": 1.2500000146076218e-08,
59
  "mu_source": "true constant (obs == true in CLEAN)",
60
  "n": 32,
 
85
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
86
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
87
  "contig": "region_1",
88
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/n32",
89
  "files": {
90
  "multihetsep.txt": "c869d03c0c64bc862f497c16a872146296dd7ba1577550ff7a7229d434a835af",
91
  "phlash_contig.npz": "6b0ff70bbe479d154238c5339ac8531d21a4c9d82c445014a08d56241d38929b",
 
93
  "view.bcf": "eee0be91315ac0b1d9b6d689a67099869f4d146b97e3bc7d9b9b5124279070c4",
94
  "view.bcf.csi": "9c05d1bb27a5bad4ffb99c789050b87c68166d4533bcc5dd5aa5c5a376e7aac4"
95
  },
96
+ "meta_sha256": "425829190218cff8c68cad3c4882bb6b915cbbd59b39e35d88e4f33386cbac44",
97
  "mu_for_tools": 1.2500000146076218e-08,
98
  "mu_source": "true constant (obs == true in CLEAN)",
99
  "n": 32,
 
124
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
125
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
126
  "contig": "region_2",
127
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/n32",
128
  "files": {
129
  "multihetsep.txt": "aab048a016dc6640ee1ec187f35edd7b8b3d8283f0370503fa568fdb1c1190cc",
130
  "phlash_contig.npz": "945322de1a4c42aa7980caefde9fe60433b25f902db3f33b45d49abc26e7fd55",
 
132
  "view.bcf": "333e58de9e2bdc3179c0288a836f72e344a538073a7024a0a9e691c32b7b5bc2",
133
  "view.bcf.csi": "03c8ec0f8d5aa6d0818f873690cdd9a6aff8c06dfe45a83b7474c1a1702b68c8"
134
  },
135
+ "meta_sha256": "3f3f4e8b5cd846603b4389a8899e522e21c8712d3f2f94bde4703fa3200602b0",
136
  "mu_for_tools": 1.2500000146076218e-08,
137
  "mu_source": "true constant (obs == true in CLEAN)",
138
  "n": 32,
 
163
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
164
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
165
  "contig": "region_3",
166
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000003/n32",
167
  "files": {
168
  "multihetsep.txt": "c87b35706662a3f60205710cb728ca502ac5d0df3d17dde7491d7f6c50c6f60a",
169
  "phlash_contig.npz": "5cf06460979051735777e43d64567ecf7404878f2c8c6e4708a3e575aa486950",
 
171
  "view.bcf": "286b4f860805ca80ce9835d665be2ff72995733b15e6938a3e14dfcf6a04880d",
172
  "view.bcf.csi": "079e1cde6dd98a3373248f1bb9f4c0649f1be8a39c733b7c48b2fc6455e6ea03"
173
  },
174
+ "meta_sha256": "ce5642a4c4f4fee7be64c76591e88b5e652453ca61404580ac75a24a2b6755ae",
175
  "mu_for_tools": 1.2500000146076218e-08,
176
  "mu_source": "true constant (obs == true in CLEAN)",
177
  "n": 32,
 
202
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
203
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
204
  "contig": "region_4",
205
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000004/n32",
206
  "files": {
207
  "multihetsep.txt": "d7418609508e4215964fe270b8eceaa1fbcc9acba8c53428ceca605564a4dc35",
208
  "phlash_contig.npz": "50ef19132a7a7c060a70994f4c873368e4fb810ecd48c3def67eb895fec77c66",
 
210
  "view.bcf": "8ef94150f12c71524fe807024323b6655e8757982119259a6fbc6908055aeb27",
211
  "view.bcf.csi": "3fa1bba665c8e73d02ec148cd1b4ece1ed7a2a5e3e007fa14fcf1010c5c58430"
212
  },
213
+ "meta_sha256": "dd7fc3e3877935d585a65fcb184e0defd5c8e1d97d3bc1fdb6b49d81ffc530b7",
214
  "mu_for_tools": 1.2500000146076218e-08,
215
  "mu_source": "true constant (obs == true in CLEAN)",
216
  "n": 32,
 
241
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
242
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
243
  "contig": "region_5",
244
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000005/n32",
245
  "files": {
246
  "multihetsep.txt": "db8237e622bfc529bf960eda5cd5fc56976531d76d0735ac38376f437d18316a",
247
  "phlash_contig.npz": "0ae5906fc2d51f586f511b3f9041a6d058f5ffad1c5c02d744990900e9251d72",
 
249
  "view.bcf": "4082571624f96746a2901149d5d8ffdc9986eea30a04bc2f82f9983a9c0d6e15",
250
  "view.bcf.csi": "622dd470c86461759e47369790d14d511587f982ba61f0ba97cc0d4ace67f522"
251
  },
252
+ "meta_sha256": "0b954de96e89edeebb1c62a53165ffd4dc6d6ec5151323ad5e7b8364a260a92f",
253
  "mu_for_tools": 1.2500000146076218e-08,
254
  "mu_source": "true constant (obs == true in CLEAN)",
255
  "n": 32,
 
280
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
281
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
282
  "contig": "region_6",
283
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/n32",
284
  "files": {
285
  "multihetsep.txt": "229003868d9cf6f240d13abe473337eb3f32cbd6418c615a386ed4c8204ab1ec",
286
  "phlash_contig.npz": "cd0e8f1f083ca0370c6c81b97327ba912c1aca914e2ef6a4494fdd8c533e8955",
 
288
  "view.bcf": "56ad35f69389ff6acaff99b0111404cfc541c9153e884a54438b310aaf7bdc18",
289
  "view.bcf.csi": "00ec393e34e3b570355998f4be73337242381c3fb5b0126c1527e3ca70460fc7"
290
  },
291
+ "meta_sha256": "d9080cd5652aa90554e8afcece388e22a01356a1b42c6ba675150dcdf7c20487",
292
  "mu_for_tools": 1.2500000146076218e-08,
293
  "mu_source": "true constant (obs == true in CLEAN)",
294
  "n": 32,
 
319
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
320
  "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2",
321
  "contig": "region_7",
322
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32",
323
  "files": {
324
  "multihetsep.txt": "4b2bd6d633a7c5b2b5a81c61004dbb8ac820c3afbad89a94877d23af190a1320",
325
  "phlash_contig.npz": "b589edbf54c7584c8197faa60144aac4201de850b156e6f654cb8c6198313ded",
 
327
  "view.bcf": "db3b9e29245475a42678f80740243ea9222c83ce0bbf0487bdb51953c6d9c763",
328
  "view.bcf.csi": "9b3b56d2e4020429a70e8bc80cb6fe0d4c3a1e8c988da259eeeb18f5bbf01995"
329
  },
330
+ "meta_sha256": "96b9a4c11d9db434fe03986254900a166ebfefebb3bfc2afc5afc9070bf1e659",
331
  "mu_for_tools": 1.2500000146076218e-08,
332
  "mu_source": "true constant (obs == true in CLEAN)",
333
  "n": 32,
method_inputs/a1/BOT_X10_20K/receipts/identity_scan_51933433.json CHANGED
@@ -6,7 +6,7 @@
6
  "plan_sha256s": [
7
  "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a"
8
  ],
9
- "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl",
10
  "registry_size_bytes": 219776193,
11
  "schema": "bench_h2h.registry_identity_scan.v1",
12
  "utc": "2026-09-16T11:03:48Z"
 
6
  "plan_sha256s": [
7
  "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a"
8
  ],
9
+ "registry_path": "$WORK/registry109k/raw_index.jsonl",
10
  "registry_size_bytes": 219776193,
11
  "schema": "bench_h2h.registry_identity_scan.v1",
12
  "utc": "2026-09-16T11:03:48Z"
method_inputs/a1/BOT_X10_20K/receipts/open_audit_51933433.json CHANGED
@@ -2,671 +2,671 @@
2
  "opened": [
3
  {
4
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.done.json"
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11
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13
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15
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- "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl"
18
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/identity_scan_51933433.json"
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23
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24
  "mode": "r",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.done.json"
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27
  {
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  "mode": "r",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz"
30
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31
  {
32
  "mode": "r",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz"
34
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35
  {
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  "mode": "r",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/sample_identities.jsonl"
38
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39
  {
40
  "mode": "r",
41
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
42
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43
  {
44
  "mode": "r",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
46
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47
  {
48
  "mode": "w",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/view.vcf"
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51
  {
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/phlash_contig.npz"
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55
  {
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  "mode": "w",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/sfs_unfolded.npy"
58
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59
  {
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/multihetsep.txt"
62
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  {
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  "mode": "r",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/view.bcf"
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/phlash_contig.npz"
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/sfs_unfolded.npy"
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/meta.json"
78
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79
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  "mode": "r",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/n32/phlash_contig.npz"
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  "mode": "r",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/n32/sfs_unfolded.npy"
86
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87
  {
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  "mode": "r",
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90
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91
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/n32/sfs_unfolded.npy"
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95
  {
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  "mode": "r",
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  {
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  "mode": "r",
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  },
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  {
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  "mode": "r",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz"
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  {
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  "mode": "r",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz"
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  {
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  "mode": "r",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/sample_identities.jsonl"
118
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  {
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
122
  },
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  {
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  "mode": "r",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
126
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  {
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  "mode": "w",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/view.vcf"
130
  },
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  {
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  "mode": "w",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/phlash_contig.npz"
134
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  {
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  "mode": "w",
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/sfs_unfolded.npy"
138
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  {
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/multihetsep.txt"
142
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  {
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/view.bcf"
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  {
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/phlash_contig.npz"
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/sfs_unfolded.npy"
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  {
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/meta.json"
158
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/n32/phlash_contig.npz"
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  {
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  {
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  {
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  {
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/.n32.tmp-4twfxthy/view.bcf"
226
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  {
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/.n32.tmp-4twfxthy/phlash_contig.npz"
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  },
231
  {
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- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/.n32.tmp-4twfxthy/sfs_unfolded.npy"
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254
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255
  {
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258
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262
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  {
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270
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271
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274
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275
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278
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280
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282
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286
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294
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302
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322
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346
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350
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358
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370
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374
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378
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382
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386
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390
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394
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414
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+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.done.json"
26
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27
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28
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29
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz"
30
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31
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32
  "mode": "r",
33
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz"
34
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35
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36
  "mode": "r",
37
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/sample_identities.jsonl"
38
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39
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40
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41
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
42
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43
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44
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45
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
46
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47
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48
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49
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/view.vcf"
50
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51
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52
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53
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/phlash_contig.npz"
54
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55
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56
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57
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/sfs_unfolded.npy"
58
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59
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60
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61
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/multihetsep.txt"
62
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63
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64
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65
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/view.bcf"
66
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67
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68
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69
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/phlash_contig.npz"
70
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71
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72
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73
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74
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75
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76
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77
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/.n32.tmp-u6ziztsa/meta.json"
78
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79
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80
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81
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/n32/phlash_contig.npz"
82
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83
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84
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85
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/n32/sfs_unfolded.npy"
86
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87
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88
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89
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/n32/phlash_contig.npz"
90
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91
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92
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93
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/n32/sfs_unfolded.npy"
94
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95
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96
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97
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/n32/view.bcf"
98
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99
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100
  "mode": "w",
101
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/v0_n32.json"
102
  },
103
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104
  "mode": "r",
105
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.done.json"
106
  },
107
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108
  "mode": "r",
109
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz"
110
  },
111
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112
  "mode": "r",
113
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz"
114
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115
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116
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117
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/sample_identities.jsonl"
118
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119
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120
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121
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
122
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123
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124
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125
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
126
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127
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128
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129
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/view.vcf"
130
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131
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132
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133
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/phlash_contig.npz"
134
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135
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136
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137
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/sfs_unfolded.npy"
138
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139
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140
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141
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/multihetsep.txt"
142
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143
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144
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145
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/view.bcf"
146
  },
147
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148
  "mode": "r",
149
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/phlash_contig.npz"
150
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151
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152
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153
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/sfs_unfolded.npy"
154
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155
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156
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157
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/.n32.tmp-ojfmk9_w/meta.json"
158
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159
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160
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161
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/n32/phlash_contig.npz"
162
  },
163
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164
  "mode": "r",
165
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/n32/sfs_unfolded.npy"
166
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167
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168
  "mode": "r",
169
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/n32/phlash_contig.npz"
170
  },
171
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172
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173
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/n32/sfs_unfolded.npy"
174
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175
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176
  "mode": "r",
177
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/n32/view.bcf"
178
  },
179
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180
  "mode": "w",
181
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/v0_n32.json"
182
  },
183
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184
  "mode": "r",
185
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.done.json"
186
  },
187
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188
  "mode": "r",
189
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz"
190
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191
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192
  "mode": "r",
193
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz"
194
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195
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196
  "mode": "r",
197
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/sample_identities.jsonl"
198
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199
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200
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201
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
202
  },
203
  {
204
  "mode": "r",
205
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
206
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207
  {
208
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209
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/.n32.tmp-4twfxthy/view.vcf"
210
  },
211
  {
212
  "mode": "w",
213
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/.n32.tmp-4twfxthy/phlash_contig.npz"
214
  },
215
  {
216
  "mode": "w",
217
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/.n32.tmp-4twfxthy/sfs_unfolded.npy"
218
  },
219
  {
220
  "mode": "w",
221
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/.n32.tmp-4twfxthy/multihetsep.txt"
222
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223
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224
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225
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/.n32.tmp-4twfxthy/view.bcf"
226
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227
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228
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229
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/.n32.tmp-4twfxthy/phlash_contig.npz"
230
  },
231
  {
232
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233
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/.n32.tmp-4twfxthy/sfs_unfolded.npy"
234
  },
235
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236
  "mode": "w",
237
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/.n32.tmp-4twfxthy/meta.json"
238
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239
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240
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241
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/n32/phlash_contig.npz"
242
  },
243
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244
  "mode": "r",
245
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/n32/sfs_unfolded.npy"
246
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247
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248
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249
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/n32/phlash_contig.npz"
250
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251
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252
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253
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/n32/sfs_unfolded.npy"
254
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255
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256
  "mode": "r",
257
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/n32/view.bcf"
258
  },
259
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260
  "mode": "w",
261
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/v0_n32.json"
262
  },
263
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264
  "mode": "r",
265
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266
  },
267
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268
  "mode": "r",
269
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz"
270
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271
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272
  "mode": "r",
273
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274
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275
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276
  "mode": "r",
277
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278
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279
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280
  "mode": "r",
281
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282
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283
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284
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285
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286
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287
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288
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289
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290
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291
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292
  "mode": "w",
293
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294
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295
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296
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297
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298
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299
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300
  "mode": "w",
301
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000003/.n32.tmp-92qibiib/multihetsep.txt"
302
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303
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304
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305
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306
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307
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308
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309
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310
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311
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312
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313
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314
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315
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316
  "mode": "w",
317
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318
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319
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320
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321
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322
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323
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324
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325
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326
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327
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328
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329
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330
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331
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332
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333
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334
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335
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336
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337
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338
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339
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340
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341
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342
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343
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344
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345
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346
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347
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348
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349
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350
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351
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352
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353
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354
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355
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356
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357
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358
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359
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360
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361
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362
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363
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364
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365
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366
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367
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368
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369
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370
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371
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372
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373
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374
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375
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376
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377
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378
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379
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380
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381
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382
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383
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384
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385
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386
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387
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388
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389
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390
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391
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392
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393
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394
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395
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396
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397
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398
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399
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400
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401
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402
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403
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404
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405
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406
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407
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408
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409
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410
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411
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412
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413
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414
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415
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416
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417
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418
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419
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420
  "mode": "w",
421
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000004/v0_n32.json"
422
  },
423
  {
424
  "mode": "r",
425
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.done.json"
426
  },
427
  {
428
  "mode": "r",
429
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz"
430
  },
431
  {
432
  "mode": "r",
433
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz"
434
  },
435
  {
436
  "mode": "r",
437
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/sample_identities.jsonl"
438
  },
439
  {
440
  "mode": "r",
441
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
442
  },
443
  {
444
  "mode": "r",
445
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446
  },
447
  {
448
  "mode": "w",
449
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450
  },
451
  {
452
  "mode": "w",
453
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454
  },
455
  {
456
  "mode": "w",
457
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458
  },
459
  {
460
  "mode": "w",
461
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462
  },
463
  {
464
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465
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466
  },
467
  {
468
  "mode": "r",
469
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000005/.n32.tmp-ixjotrwo/phlash_contig.npz"
470
  },
471
  {
472
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473
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474
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475
  {
476
  "mode": "w",
477
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000005/.n32.tmp-ixjotrwo/meta.json"
478
  },
479
  {
480
  "mode": "r",
481
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000005/n32/phlash_contig.npz"
482
  },
483
  {
484
  "mode": "r",
485
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000005/n32/sfs_unfolded.npy"
486
  },
487
  {
488
  "mode": "r",
489
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000005/n32/phlash_contig.npz"
490
  },
491
  {
492
  "mode": "r",
493
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000005/n32/sfs_unfolded.npy"
494
  },
495
  {
496
  "mode": "r",
497
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000005/n32/view.bcf"
498
  },
499
  {
500
  "mode": "w",
501
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000005/v0_n32.json"
502
  },
503
  {
504
  "mode": "r",
505
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.done.json"
506
  },
507
  {
508
  "mode": "r",
509
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz"
510
  },
511
  {
512
  "mode": "r",
513
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz"
514
  },
515
  {
516
  "mode": "r",
517
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/sample_identities.jsonl"
518
  },
519
  {
520
  "mode": "r",
521
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
522
  },
523
  {
524
  "mode": "r",
525
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
526
  },
527
  {
528
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529
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530
  },
531
  {
532
  "mode": "w",
533
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/.n32.tmp-7poy00kc/phlash_contig.npz"
534
  },
535
  {
536
  "mode": "w",
537
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538
  },
539
  {
540
  "mode": "w",
541
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/.n32.tmp-7poy00kc/multihetsep.txt"
542
  },
543
  {
544
  "mode": "r",
545
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/.n32.tmp-7poy00kc/view.bcf"
546
  },
547
  {
548
  "mode": "r",
549
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/.n32.tmp-7poy00kc/phlash_contig.npz"
550
  },
551
  {
552
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553
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554
  },
555
  {
556
  "mode": "w",
557
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/.n32.tmp-7poy00kc/meta.json"
558
  },
559
  {
560
  "mode": "r",
561
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/n32/phlash_contig.npz"
562
  },
563
  {
564
  "mode": "r",
565
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/n32/sfs_unfolded.npy"
566
  },
567
  {
568
  "mode": "r",
569
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/n32/phlash_contig.npz"
570
  },
571
  {
572
  "mode": "r",
573
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/n32/sfs_unfolded.npy"
574
  },
575
  {
576
  "mode": "r",
577
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578
  },
579
  {
580
  "mode": "w",
581
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/v0_n32.json"
582
  },
583
  {
584
  "mode": "r",
585
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.done.json"
586
  },
587
  {
588
  "mode": "r",
589
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz"
590
  },
591
  {
592
  "mode": "r",
593
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz"
594
  },
595
  {
596
  "mode": "r",
597
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/sample_identities.jsonl"
598
  },
599
  {
600
  "mode": "r",
601
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
602
  },
603
  {
604
  "mode": "r",
605
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz"
606
  },
607
  {
608
  "mode": "w",
609
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610
  },
611
  {
612
  "mode": "w",
613
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/.n32.tmp-068ubdl2/phlash_contig.npz"
614
  },
615
  {
616
  "mode": "w",
617
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/.n32.tmp-068ubdl2/sfs_unfolded.npy"
618
  },
619
  {
620
  "mode": "w",
621
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/.n32.tmp-068ubdl2/multihetsep.txt"
622
  },
623
  {
624
  "mode": "r",
625
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/.n32.tmp-068ubdl2/view.bcf"
626
  },
627
  {
628
  "mode": "r",
629
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/.n32.tmp-068ubdl2/phlash_contig.npz"
630
  },
631
  {
632
  "mode": "r",
633
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/.n32.tmp-068ubdl2/sfs_unfolded.npy"
634
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635
  {
636
  "mode": "w",
637
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/.n32.tmp-068ubdl2/meta.json"
638
  },
639
  {
640
  "mode": "r",
641
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32/phlash_contig.npz"
642
  },
643
  {
644
  "mode": "r",
645
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32/sfs_unfolded.npy"
646
  },
647
  {
648
  "mode": "r",
649
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32/phlash_contig.npz"
650
  },
651
  {
652
  "mode": "r",
653
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654
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655
  {
656
  "mode": "r",
657
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658
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659
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660
  "mode": "w",
661
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/v0_n32.json"
662
  },
663
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664
  "mode": "w",
665
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666
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667
  {
668
  "mode": "w",
669
+ "path": "$WORK/bench_h2h_20260915/events.log"
670
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671
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672
  "purposes": [
method_inputs/a1/BOT_X10_5K/r00000000/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
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@@ -50,7 +50,7 @@
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  "fragment_sha256": "148dc9db233c3e70a24b95ad421143452f20f2fcc8a7204323955e4ec0ee3bc7",
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50
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54
  "fragment_sha256": "148dc9db233c3e70a24b95ad421143452f20f2fcc8a7204323955e4ec0ee3bc7",
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  39,
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@@ -50,7 +50,7 @@
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54
  "fragment_sha256": "148dc9db233c3e70a24b95ad421143452f20f2fcc8a7204323955e4ec0ee3bc7",
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  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
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50
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+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "148dc9db233c3e70a24b95ad421143452f20f2fcc8a7204323955e4ec0ee3bc7",
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  16,
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@@ -50,7 +50,7 @@
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54
  "fragment_sha256": "148dc9db233c3e70a24b95ad421143452f20f2fcc8a7204323955e4ec0ee3bc7",
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50
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+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "148dc9db233c3e70a24b95ad421143452f20f2fcc8a7204323955e4ec0ee3bc7",
55
  "ladder_columns": [
56
  23,
method_inputs/a1/BOT_X10_5K/r00000003/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
2
  "S": 50488,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 3,
7
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
8
  "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000003",
@@ -50,7 +50,7 @@
50
  "view.bcf": "8c0273e1539a8274ccab9ce65fd58bc254827f52ce996f4e608cb528968df1e1",
51
  "view.bcf.csi": "f76ce3346c9c95de5cfa15e038926d4f5046f8e1c03726de4e1a5420e8b95602"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "148dc9db233c3e70a24b95ad421143452f20f2fcc8a7204323955e4ec0ee3bc7",
55
  "ladder_columns": [
56
  35,
 
2
  "S": 50488,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 3,
7
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
8
  "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000003",
 
50
  "view.bcf": "8c0273e1539a8274ccab9ce65fd58bc254827f52ce996f4e608cb528968df1e1",
51
  "view.bcf.csi": "f76ce3346c9c95de5cfa15e038926d4f5046f8e1c03726de4e1a5420e8b95602"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz",
54
  "fragment_sha256": "148dc9db233c3e70a24b95ad421143452f20f2fcc8a7204323955e4ec0ee3bc7",
55
  "ladder_columns": [
56
  35,
method_inputs/a1/BOT_X10_5K/r00000004/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
2
  "S": 52084,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 4,
7
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
8
  "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000004",
@@ -50,7 +50,7 @@
50
  "view.bcf": "2f3d04405704cfad06073609f7b3ced827264bd7a8072d580691e1ff0ba72b59",
51
  "view.bcf.csi": "180bdccf01b6bcb3bf8d251f4c907ae4b219e9bee91ef604ab7e45ef4775fa1c"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "dce876d95a65492d711628bab6424e3f0788face870fccaee1a87cb9c17235e1",
55
  "ladder_columns": [
56
  22,
 
2
  "S": 52084,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 4,
7
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
8
  "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000004",
 
50
  "view.bcf": "2f3d04405704cfad06073609f7b3ced827264bd7a8072d580691e1ff0ba72b59",
51
  "view.bcf.csi": "180bdccf01b6bcb3bf8d251f4c907ae4b219e9bee91ef604ab7e45ef4775fa1c"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "dce876d95a65492d711628bab6424e3f0788face870fccaee1a87cb9c17235e1",
55
  "ladder_columns": [
56
  22,
method_inputs/a1/BOT_X10_5K/r00000005/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
2
  "S": 52207,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 5,
7
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
8
  "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000005",
@@ -50,7 +50,7 @@
50
  "view.bcf": "cf8901a945094261b104403791a4ae2f1b6acdc26827227f705d549a08366f86",
51
  "view.bcf.csi": "e7044e164e08f4b1a0f5de58972ef139953bcfc9c91f728faab03946471a0b49"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "dce876d95a65492d711628bab6424e3f0788face870fccaee1a87cb9c17235e1",
55
  "ladder_columns": [
56
  8,
 
2
  "S": 52207,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 5,
7
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
8
  "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000005",
 
50
  "view.bcf": "cf8901a945094261b104403791a4ae2f1b6acdc26827227f705d549a08366f86",
51
  "view.bcf.csi": "e7044e164e08f4b1a0f5de58972ef139953bcfc9c91f728faab03946471a0b49"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "dce876d95a65492d711628bab6424e3f0788face870fccaee1a87cb9c17235e1",
55
  "ladder_columns": [
56
  8,
method_inputs/a1/BOT_X10_5K/r00000006/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
2
  "S": 52219,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 6,
7
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
8
  "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000006",
@@ -50,7 +50,7 @@
50
  "view.bcf": "e877eb53e5b0de7eb5b674af6ab521f2c02e5b0283ffe789c9040449d796fa99",
51
  "view.bcf.csi": "0bd6d59d8b3a5d4fa2ab94a0f204f3b1a4f4627592137fe7cfabaebe13a523aa"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "dce876d95a65492d711628bab6424e3f0788face870fccaee1a87cb9c17235e1",
55
  "ladder_columns": [
56
  60,
 
2
  "S": 52219,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 6,
7
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
8
  "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000006",
 
50
  "view.bcf": "e877eb53e5b0de7eb5b674af6ab521f2c02e5b0283ffe789c9040449d796fa99",
51
  "view.bcf.csi": "0bd6d59d8b3a5d4fa2ab94a0f204f3b1a4f4627592137fe7cfabaebe13a523aa"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "dce876d95a65492d711628bab6424e3f0788face870fccaee1a87cb9c17235e1",
55
  "ladder_columns": [
56
  60,
method_inputs/a1/BOT_X10_5K/r00000007/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
2
  "S": 51934,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 7,
7
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
8
  "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000007",
@@ -50,7 +50,7 @@
50
  "view.bcf": "5c9554fa2699566f2fcb8cbd2c76239d10dcb658d6ca3b87a7121108803ad3d2",
51
  "view.bcf.csi": "885ae3ae65a79896261f9f74c49bba3701d0185d19d0df3d3c303acd54024cb6"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "dce876d95a65492d711628bab6424e3f0788face870fccaee1a87cb9c17235e1",
55
  "ladder_columns": [
56
  31,
 
2
  "S": 51934,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 7,
7
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
8
  "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000007",
 
50
  "view.bcf": "5c9554fa2699566f2fcb8cbd2c76239d10dcb658d6ca3b87a7121108803ad3d2",
51
  "view.bcf.csi": "885ae3ae65a79896261f9f74c49bba3701d0185d19d0df3d3c303acd54024cb6"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "dce876d95a65492d711628bab6424e3f0788face870fccaee1a87cb9c17235e1",
55
  "ladder_columns": [
56
  31,
method_inputs/a1/BOT_X10_5K/receipts/export_51933159.json CHANGED
@@ -1,25 +1,25 @@
1
  {
2
  "arm": "CLEAN",
3
- "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools",
4
  "dataset": "v2_a1_BOT_X10_5K",
5
  "host": "cn113-35-l",
6
  "identity_scan": {
7
  "hits": 0,
8
  "lines_scanned": 104996,
9
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/receipts/identity_scan_51933159.json",
10
- "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl",
11
  "registry_size_bytes": 219776193,
12
- "sha256": "effc84f9ca3514f222b2ad701e4742b9a43aa21dc4c6362bfae59a72a06fc681"
13
  },
14
  "job": "51933159",
15
- "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh",
16
  "n": [
17
  32
18
  ],
19
  "open_audit": {
20
- "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/receipts/open_audit_51933159.json",
21
  "production_files_opened": [
22
- "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl"
23
  ],
24
  "refused": 0
25
  },
@@ -46,7 +46,7 @@
46
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
47
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
48
  "contig": "region_0",
49
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000000/n32",
50
  "files": {
51
  "multihetsep.txt": "bb3463d74b0815ba55b5d67a329a06b6f6d7a60cd835fccff93de9d89213a624",
52
  "phlash_contig.npz": "aa89b0013e897ce272fbaf2c64890c7a2915cca66f623a56012b048216bc37a4",
@@ -54,7 +54,7 @@
54
  "view.bcf": "67c52b3b5a1271d098fa5d22fc557b7743c8b61f5219f7d58287f7dc29283d2c",
55
  "view.bcf.csi": "3744bbbc4f54491a2cab3596c9a4ba3b8aecf48d694b179c2de209407375e8f7"
56
  },
57
- "meta_sha256": "419a0f95404fc5fba9a30c2bef23c049af42931cc483b2d263361a3b8d794a7f",
58
  "mu_for_tools": 1.2500000146076218e-08,
59
  "mu_source": "true constant (obs == true in CLEAN)",
60
  "n": 32,
@@ -85,7 +85,7 @@
85
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
86
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
87
  "contig": "region_1",
88
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/n32",
89
  "files": {
90
  "multihetsep.txt": "19cf872c59ce915e2ece4387ebd8fb1f9db70b7f4a981f30bb2886f8a83dd4d5",
91
  "phlash_contig.npz": "43d177da77b450ac5e1bfba3ad40d685a55f126f2ca22c0003ae944278a1712a",
@@ -93,7 +93,7 @@
93
  "view.bcf": "176f1583d0d132beb7754e14e214aa5c1f1ffdc3cee701b078687264e3c6920f",
94
  "view.bcf.csi": "7d51358792806a08ad12657ea6ed7bc0806c00529daedda2199fa121da07045a"
95
  },
96
- "meta_sha256": "e29742663bdd5d2598226ab3b098aa02b7a79438aaa402d6f383e9d70428c65d",
97
  "mu_for_tools": 1.2500000146076218e-08,
98
  "mu_source": "true constant (obs == true in CLEAN)",
99
  "n": 32,
@@ -124,7 +124,7 @@
124
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
125
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
126
  "contig": "region_2",
127
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000002/n32",
128
  "files": {
129
  "multihetsep.txt": "7e1c7de66200161f37b0b88a14999253d8257ea44a1866396b53b3c9d0956087",
130
  "phlash_contig.npz": "30376b5c7fed6a2a4945dd059dddd5d3eee4badc65e616a6c002a639b938c931",
@@ -132,7 +132,7 @@
132
  "view.bcf": "47dd89be9ff6ea2011ffec8eb239b7b46b2f0a508ea405eefd466357f2ab8543",
133
  "view.bcf.csi": "8b48bb1eb9745ac1dc343ff8e01a7a94649385b30ce5966c64e1b5d063a335c0"
134
  },
135
- "meta_sha256": "54dd2cdd44954075538bef2ea305cda2979c0f9725d0ecf018c0dcb0423d920c",
136
  "mu_for_tools": 1.2500000146076218e-08,
137
  "mu_source": "true constant (obs == true in CLEAN)",
138
  "n": 32,
@@ -163,7 +163,7 @@
163
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
164
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
165
  "contig": "region_3",
166
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000003/n32",
167
  "files": {
168
  "multihetsep.txt": "595b6b42c990d1875396379cdfb1a57f14175a14ea07c071bd18de1a30c242c4",
169
  "phlash_contig.npz": "cb7f2323c370bf7adf5e13a2261129a73e2989780a8a1dd31fb608c2f1b20ba6",
@@ -171,7 +171,7 @@
171
  "view.bcf": "8c0273e1539a8274ccab9ce65fd58bc254827f52ce996f4e608cb528968df1e1",
172
  "view.bcf.csi": "f76ce3346c9c95de5cfa15e038926d4f5046f8e1c03726de4e1a5420e8b95602"
173
  },
174
- "meta_sha256": "5e5067dcc8cce8abc73745a3ef3de76dffd39c37cdda0bd3c8076e16cf7310f9",
175
  "mu_for_tools": 1.2500000146076218e-08,
176
  "mu_source": "true constant (obs == true in CLEAN)",
177
  "n": 32,
@@ -202,7 +202,7 @@
202
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
203
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
204
  "contig": "region_4",
205
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000004/n32",
206
  "files": {
207
  "multihetsep.txt": "7b63aae6b1e3b6ab3cea01c74dee308c011ef16dd64d65c8b866274e1556b41b",
208
  "phlash_contig.npz": "a24fc1a16509cfac3711030953817ab5140307b195fff83abd69f12fc6dd29bb",
@@ -210,7 +210,7 @@
210
  "view.bcf": "2f3d04405704cfad06073609f7b3ced827264bd7a8072d580691e1ff0ba72b59",
211
  "view.bcf.csi": "180bdccf01b6bcb3bf8d251f4c907ae4b219e9bee91ef604ab7e45ef4775fa1c"
212
  },
213
- "meta_sha256": "adcf118caa9d240f604d0adbc3a98d00b332883adcb3382757c4cb332c241091",
214
  "mu_for_tools": 1.2500000146076218e-08,
215
  "mu_source": "true constant (obs == true in CLEAN)",
216
  "n": 32,
@@ -241,7 +241,7 @@
241
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
242
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
243
  "contig": "region_5",
244
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000005/n32",
245
  "files": {
246
  "multihetsep.txt": "bc3303606d90aa2e741e15e508edaf82f11f52edb79fb933cbb4c9cffa2fe67b",
247
  "phlash_contig.npz": "fae8a81940828b21b91d1b226aa663380e4aa7af657994d3b3237e1aa2244efa",
@@ -249,7 +249,7 @@
249
  "view.bcf": "cf8901a945094261b104403791a4ae2f1b6acdc26827227f705d549a08366f86",
250
  "view.bcf.csi": "e7044e164e08f4b1a0f5de58972ef139953bcfc9c91f728faab03946471a0b49"
251
  },
252
- "meta_sha256": "d7c37fe73cac2ec040d025756e8baa6c535bd0b4bb0997c287909f0a9ffbc120",
253
  "mu_for_tools": 1.2500000146076218e-08,
254
  "mu_source": "true constant (obs == true in CLEAN)",
255
  "n": 32,
@@ -280,7 +280,7 @@
280
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
281
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
282
  "contig": "region_6",
283
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000006/n32",
284
  "files": {
285
  "multihetsep.txt": "acd98d1b7a0ec26fd5588a130fc65e5b5ed1b3932d8e4e41d882ab9960b5635e",
286
  "phlash_contig.npz": "b2e613879d54cfb715fdee2b8a1cc2d2e1ceba8d6d10a56e46f4ef49cc709ee0",
@@ -288,7 +288,7 @@
288
  "view.bcf": "e877eb53e5b0de7eb5b674af6ab521f2c02e5b0283ffe789c9040449d796fa99",
289
  "view.bcf.csi": "0bd6d59d8b3a5d4fa2ab94a0f204f3b1a4f4627592137fe7cfabaebe13a523aa"
290
  },
291
- "meta_sha256": "bbdb464b594241decf2d4de254c44df8399b5d416f26bdc32c97d41451932135",
292
  "mu_for_tools": 1.2500000146076218e-08,
293
  "mu_source": "true constant (obs == true in CLEAN)",
294
  "n": 32,
@@ -319,7 +319,7 @@
319
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
320
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
321
  "contig": "region_7",
322
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000007/n32",
323
  "files": {
324
  "multihetsep.txt": "afe023c22006e91dc772c546781cb2d242b84ade1dcc01a3ff0a1231575a06b0",
325
  "phlash_contig.npz": "fec63fdca9a472212c6ec347edd7d673cff404e05cb9eaaa4a5022b9bad26760",
@@ -327,7 +327,7 @@
327
  "view.bcf": "5c9554fa2699566f2fcb8cbd2c76239d10dcb658d6ca3b87a7121108803ad3d2",
328
  "view.bcf.csi": "885ae3ae65a79896261f9f74c49bba3701d0185d19d0df3d3c303acd54024cb6"
329
  },
330
- "meta_sha256": "5104fc4c6c22e8d4b6a7fe7a9f809c5da874eebf76b92436afa52fe8d99d8f1c",
331
  "mu_for_tools": 1.2500000146076218e-08,
332
  "mu_source": "true constant (obs == true in CLEAN)",
333
  "n": 32,
 
1
  {
2
  "arm": "CLEAN",
3
+ "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools",
4
  "dataset": "v2_a1_BOT_X10_5K",
5
  "host": "cn113-35-l",
6
  "identity_scan": {
7
  "hits": 0,
8
  "lines_scanned": 104996,
9
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/receipts/identity_scan_51933159.json",
10
+ "registry_path": "$WORK/registry109k/raw_index.jsonl",
11
  "registry_size_bytes": 219776193,
12
+ "sha256": "221e5a092355fbe65b16ab217fcede3046c488bea50e08c166292bbb3696a9b1"
13
  },
14
  "job": "51933159",
15
+ "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh",
16
  "n": [
17
  32
18
  ],
19
  "open_audit": {
20
+ "log": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/receipts/open_audit_51933159.json",
21
  "production_files_opened": [
22
+ "$WORK/registry109k/raw_index.jsonl"
23
  ],
24
  "refused": 0
25
  },
 
46
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
47
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
48
  "contig": "region_0",
49
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000000/n32",
50
  "files": {
51
  "multihetsep.txt": "bb3463d74b0815ba55b5d67a329a06b6f6d7a60cd835fccff93de9d89213a624",
52
  "phlash_contig.npz": "aa89b0013e897ce272fbaf2c64890c7a2915cca66f623a56012b048216bc37a4",
 
54
  "view.bcf": "67c52b3b5a1271d098fa5d22fc557b7743c8b61f5219f7d58287f7dc29283d2c",
55
  "view.bcf.csi": "3744bbbc4f54491a2cab3596c9a4ba3b8aecf48d694b179c2de209407375e8f7"
56
  },
57
+ "meta_sha256": "93a328e1c0ddc569f9c234cc560024efb31abd4b5d300866aba8ec5d67ab0bcb",
58
  "mu_for_tools": 1.2500000146076218e-08,
59
  "mu_source": "true constant (obs == true in CLEAN)",
60
  "n": 32,
 
85
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
86
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
87
  "contig": "region_1",
88
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/n32",
89
  "files": {
90
  "multihetsep.txt": "19cf872c59ce915e2ece4387ebd8fb1f9db70b7f4a981f30bb2886f8a83dd4d5",
91
  "phlash_contig.npz": "43d177da77b450ac5e1bfba3ad40d685a55f126f2ca22c0003ae944278a1712a",
 
93
  "view.bcf": "176f1583d0d132beb7754e14e214aa5c1f1ffdc3cee701b078687264e3c6920f",
94
  "view.bcf.csi": "7d51358792806a08ad12657ea6ed7bc0806c00529daedda2199fa121da07045a"
95
  },
96
+ "meta_sha256": "7495c265e57b0a45b4b227b7dda30ef55caf3b5ce4c174f6b91381f84e36ae5e",
97
  "mu_for_tools": 1.2500000146076218e-08,
98
  "mu_source": "true constant (obs == true in CLEAN)",
99
  "n": 32,
 
124
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
125
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
126
  "contig": "region_2",
127
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000002/n32",
128
  "files": {
129
  "multihetsep.txt": "7e1c7de66200161f37b0b88a14999253d8257ea44a1866396b53b3c9d0956087",
130
  "phlash_contig.npz": "30376b5c7fed6a2a4945dd059dddd5d3eee4badc65e616a6c002a639b938c931",
 
132
  "view.bcf": "47dd89be9ff6ea2011ffec8eb239b7b46b2f0a508ea405eefd466357f2ab8543",
133
  "view.bcf.csi": "8b48bb1eb9745ac1dc343ff8e01a7a94649385b30ce5966c64e1b5d063a335c0"
134
  },
135
+ "meta_sha256": "b5357bc11bc6454cebb7c29cfcf2c77321ed8315973c429199850372cbdf512d",
136
  "mu_for_tools": 1.2500000146076218e-08,
137
  "mu_source": "true constant (obs == true in CLEAN)",
138
  "n": 32,
 
163
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
164
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
165
  "contig": "region_3",
166
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000003/n32",
167
  "files": {
168
  "multihetsep.txt": "595b6b42c990d1875396379cdfb1a57f14175a14ea07c071bd18de1a30c242c4",
169
  "phlash_contig.npz": "cb7f2323c370bf7adf5e13a2261129a73e2989780a8a1dd31fb608c2f1b20ba6",
 
171
  "view.bcf": "8c0273e1539a8274ccab9ce65fd58bc254827f52ce996f4e608cb528968df1e1",
172
  "view.bcf.csi": "f76ce3346c9c95de5cfa15e038926d4f5046f8e1c03726de4e1a5420e8b95602"
173
  },
174
+ "meta_sha256": "6950f259b33956f5dc3de161fbf0952e52dcd303652e26f8b1a387907b415f9a",
175
  "mu_for_tools": 1.2500000146076218e-08,
176
  "mu_source": "true constant (obs == true in CLEAN)",
177
  "n": 32,
 
202
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
203
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
204
  "contig": "region_4",
205
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000004/n32",
206
  "files": {
207
  "multihetsep.txt": "7b63aae6b1e3b6ab3cea01c74dee308c011ef16dd64d65c8b866274e1556b41b",
208
  "phlash_contig.npz": "a24fc1a16509cfac3711030953817ab5140307b195fff83abd69f12fc6dd29bb",
 
210
  "view.bcf": "2f3d04405704cfad06073609f7b3ced827264bd7a8072d580691e1ff0ba72b59",
211
  "view.bcf.csi": "180bdccf01b6bcb3bf8d251f4c907ae4b219e9bee91ef604ab7e45ef4775fa1c"
212
  },
213
+ "meta_sha256": "b89b1fd69521b35a91a6524f52309328f78fbf3d827fd0fea8c94ca8be273083",
214
  "mu_for_tools": 1.2500000146076218e-08,
215
  "mu_source": "true constant (obs == true in CLEAN)",
216
  "n": 32,
 
241
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
242
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
243
  "contig": "region_5",
244
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000005/n32",
245
  "files": {
246
  "multihetsep.txt": "bc3303606d90aa2e741e15e508edaf82f11f52edb79fb933cbb4c9cffa2fe67b",
247
  "phlash_contig.npz": "fae8a81940828b21b91d1b226aa663380e4aa7af657994d3b3237e1aa2244efa",
 
249
  "view.bcf": "cf8901a945094261b104403791a4ae2f1b6acdc26827227f705d549a08366f86",
250
  "view.bcf.csi": "e7044e164e08f4b1a0f5de58972ef139953bcfc9c91f728faab03946471a0b49"
251
  },
252
+ "meta_sha256": "a500a4ff3d6b1ca946e6bbc97a4346deb75b377dedf7fb24a778e45ac221035b",
253
  "mu_for_tools": 1.2500000146076218e-08,
254
  "mu_source": "true constant (obs == true in CLEAN)",
255
  "n": 32,
 
280
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
281
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
282
  "contig": "region_6",
283
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000006/n32",
284
  "files": {
285
  "multihetsep.txt": "acd98d1b7a0ec26fd5588a130fc65e5b5ed1b3932d8e4e41d882ab9960b5635e",
286
  "phlash_contig.npz": "b2e613879d54cfb715fdee2b8a1cc2d2e1ceba8d6d10a56e46f4ef49cc709ee0",
 
288
  "view.bcf": "e877eb53e5b0de7eb5b674af6ab521f2c02e5b0283ffe789c9040449d796fa99",
289
  "view.bcf.csi": "0bd6d59d8b3a5d4fa2ab94a0f204f3b1a4f4627592137fe7cfabaebe13a523aa"
290
  },
291
+ "meta_sha256": "7873edb9bc6349340a1713d51d66ddb935a4e0d42599e47c91e138c6781dede4",
292
  "mu_for_tools": 1.2500000146076218e-08,
293
  "mu_source": "true constant (obs == true in CLEAN)",
294
  "n": 32,
 
319
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
320
  "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16",
321
  "contig": "region_7",
322
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000007/n32",
323
  "files": {
324
  "multihetsep.txt": "afe023c22006e91dc772c546781cb2d242b84ade1dcc01a3ff0a1231575a06b0",
325
  "phlash_contig.npz": "fec63fdca9a472212c6ec347edd7d673cff404e05cb9eaaa4a5022b9bad26760",
 
327
  "view.bcf": "5c9554fa2699566f2fcb8cbd2c76239d10dcb658d6ca3b87a7121108803ad3d2",
328
  "view.bcf.csi": "885ae3ae65a79896261f9f74c49bba3701d0185d19d0df3d3c303acd54024cb6"
329
  },
330
+ "meta_sha256": "69d61865336d42cb1fe05ede3a636ed17eef36d6c87c0de25bb69542728f37f1",
331
  "mu_for_tools": 1.2500000146076218e-08,
332
  "mu_source": "true constant (obs == true in CLEAN)",
333
  "n": 32,
method_inputs/a1/BOT_X10_5K/receipts/identity_scan_51933159.json CHANGED
@@ -6,7 +6,7 @@
6
  "plan_sha256s": [
7
  "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530"
8
  ],
9
- "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl",
10
  "registry_size_bytes": 219776193,
11
  "schema": "bench_h2h.registry_identity_scan.v1",
12
  "utc": "2026-09-16T10:58:31Z"
 
6
  "plan_sha256s": [
7
  "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530"
8
  ],
9
+ "registry_path": "$WORK/registry109k/raw_index.jsonl",
10
  "registry_size_bytes": 219776193,
11
  "schema": "bench_h2h.registry_identity_scan.v1",
12
  "utc": "2026-09-16T10:58:31Z"
method_inputs/a1/BOT_X10_5K/receipts/open_audit_51933159.json CHANGED
@@ -2,671 +2,671 @@
2
  "opened": [
3
  {
4
  "mode": "r",
5
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.done.json"
6
  },
7
  {
8
  "mode": "r",
9
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.done.json"
10
  },
11
  {
12
  "mode": "r",
13
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000002.done.json"
14
  },
15
  {
16
  "mode": "r",
17
- "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl"
18
  },
19
  {
20
  "mode": "w",
21
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/receipts/identity_scan_51933159.json"
22
  },
23
  {
24
  "mode": "r",
25
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.done.json"
26
  },
27
  {
28
  "mode": "r",
29
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz"
30
  },
31
  {
32
  "mode": "r",
33
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz"
34
  },
35
  {
36
  "mode": "r",
37
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/sample_identities.jsonl"
38
  },
39
  {
40
  "mode": "r",
41
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz"
42
  },
43
  {
44
  "mode": "r",
45
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz"
46
  },
47
  {
48
  "mode": "w",
49
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000000/.n32.tmp-kym_zbcw/view.vcf"
50
  },
51
  {
52
  "mode": "w",
53
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000000/.n32.tmp-kym_zbcw/phlash_contig.npz"
54
  },
55
  {
56
  "mode": "w",
57
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000000/.n32.tmp-kym_zbcw/sfs_unfolded.npy"
58
  },
59
  {
60
  "mode": "w",
61
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000000/.n32.tmp-kym_zbcw/multihetsep.txt"
62
  },
63
  {
64
  "mode": "r",
65
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138
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154
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408
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410
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411
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422
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430
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438
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474
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98
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99
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100
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101
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102
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103
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104
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105
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106
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107
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108
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109
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz"
110
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111
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112
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113
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz"
114
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115
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116
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117
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118
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119
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120
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121
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122
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123
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124
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125
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz"
126
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127
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128
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129
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/.n32.tmp-1bjmkv_3/view.vcf"
130
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131
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132
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133
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/.n32.tmp-1bjmkv_3/phlash_contig.npz"
134
  },
135
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136
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137
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138
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139
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140
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141
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/.n32.tmp-1bjmkv_3/multihetsep.txt"
142
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143
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144
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145
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146
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147
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148
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149
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/.n32.tmp-1bjmkv_3/phlash_contig.npz"
150
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151
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152
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153
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154
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155
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156
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157
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/.n32.tmp-1bjmkv_3/meta.json"
158
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159
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160
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161
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162
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163
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164
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165
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/n32/sfs_unfolded.npy"
166
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167
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168
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169
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/n32/phlash_contig.npz"
170
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171
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172
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173
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/n32/sfs_unfolded.npy"
174
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175
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176
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177
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/n32/view.bcf"
178
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179
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180
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181
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/v0_n32.json"
182
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183
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184
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185
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.done.json"
186
  },
187
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188
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189
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz"
190
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191
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192
  "mode": "r",
193
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz"
194
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195
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196
  "mode": "r",
197
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/sample_identities.jsonl"
198
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199
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200
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201
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz"
202
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203
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204
  "mode": "r",
205
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz"
206
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207
  {
208
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209
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000002/.n32.tmp-g0i25zvp/view.vcf"
210
  },
211
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212
  "mode": "w",
213
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000002/.n32.tmp-g0i25zvp/phlash_contig.npz"
214
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215
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216
  "mode": "w",
217
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000002/.n32.tmp-g0i25zvp/sfs_unfolded.npy"
218
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219
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220
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221
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000002/.n32.tmp-g0i25zvp/multihetsep.txt"
222
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223
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224
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225
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000002/.n32.tmp-g0i25zvp/view.bcf"
226
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227
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228
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229
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230
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231
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232
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233
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000002/.n32.tmp-g0i25zvp/sfs_unfolded.npy"
234
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235
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236
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237
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238
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239
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240
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241
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242
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243
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244
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245
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246
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247
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248
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249
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250
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251
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252
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253
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254
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255
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256
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257
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258
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259
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260
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261
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262
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263
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264
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265
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266
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267
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268
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269
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270
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271
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272
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273
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274
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275
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276
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277
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278
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279
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280
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281
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282
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283
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284
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285
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286
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287
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288
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289
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290
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291
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292
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293
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294
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295
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296
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297
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298
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299
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300
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301
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302
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303
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304
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305
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306
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307
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308
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309
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310
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311
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312
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313
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314
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315
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316
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317
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318
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319
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320
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321
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322
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323
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324
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325
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326
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327
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328
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329
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330
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331
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332
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333
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334
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335
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336
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337
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338
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339
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340
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341
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342
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343
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344
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345
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346
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347
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348
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349
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350
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351
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352
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353
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354
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355
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356
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357
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358
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359
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360
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361
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362
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363
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364
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365
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366
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367
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368
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369
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370
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371
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372
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373
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374
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375
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376
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377
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378
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379
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380
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381
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382
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383
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384
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385
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386
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387
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388
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389
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390
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391
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392
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393
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394
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395
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396
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397
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398
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399
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400
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401
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402
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403
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404
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405
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406
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407
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408
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409
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410
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411
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412
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413
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414
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415
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416
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417
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418
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419
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420
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421
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422
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423
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424
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425
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426
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427
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428
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429
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430
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431
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432
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433
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434
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435
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436
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437
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438
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439
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440
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441
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442
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443
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444
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445
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446
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447
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448
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449
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450
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451
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452
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453
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454
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455
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456
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457
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458
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459
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460
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461
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462
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464
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465
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466
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468
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469
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470
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471
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472
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473
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474
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475
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476
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477
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478
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479
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480
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481
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482
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483
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484
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485
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486
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487
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488
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489
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490
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491
  {
492
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493
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494
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495
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496
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497
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500
  "mode": "w",
501
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502
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503
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504
  "mode": "r",
505
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.done.json"
506
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507
  {
508
  "mode": "r",
509
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz"
510
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511
  {
512
  "mode": "r",
513
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz"
514
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515
  {
516
  "mode": "r",
517
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/sample_identities.jsonl"
518
  },
519
  {
520
  "mode": "r",
521
+ "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz"
522
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523
  {
524
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526
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527
  {
528
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529
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530
  },
531
  {
532
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534
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535
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536
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539
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564
  "mode": "r",
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567
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569
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571
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572
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573
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578
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579
  {
580
  "mode": "w",
581
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582
  },
583
  {
584
  "mode": "r",
585
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586
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587
  {
588
  "mode": "r",
589
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590
  },
591
  {
592
  "mode": "r",
593
+ "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz"
594
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  {
596
  "mode": "r",
597
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598
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  {
600
  "mode": "r",
601
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  {
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607
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610
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612
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614
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615
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621
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627
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628
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629
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631
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632
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639
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640
  "mode": "r",
641
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642
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643
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644
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645
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647
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648
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649
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650
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652
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54
  "fragment_sha256": "80fdae05a5cc7b52f7c53fe978cd68a93b04b5c8e1502ecd64defd351b20e14f",
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+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 4,
7
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
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  "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000004",
 
50
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51
  "view.bcf.csi": "7995174affd7ef72a142e57f9bac401f55a867746d7cd713879df9c5d3b64b6a"
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  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "80fdae05a5cc7b52f7c53fe978cd68a93b04b5c8e1502ecd64defd351b20e14f",
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  22,
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- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz",
6
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  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
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@@ -50,7 +50,7 @@
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54
  "fragment_sha256": "80fdae05a5cc7b52f7c53fe978cd68a93b04b5c8e1502ecd64defd351b20e14f",
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+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 5,
7
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
8
  "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000005",
 
50
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51
  "view.bcf.csi": "2118f830335f4afdf093959f6baa7ccf7adbedbe7adb0cffbb1a671770c3ee27"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "80fdae05a5cc7b52f7c53fe978cd68a93b04b5c8e1502ecd64defd351b20e14f",
55
  "ladder_columns": [
56
  8,
method_inputs/a1/CONST_2K/r00000006/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
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- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz",
6
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7
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
8
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@@ -50,7 +50,7 @@
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  "view.bcf.csi": "f7084597661e0dad0aeac230a4cbb16fb174723be023997ff7edaa7ce5f8cbd6"
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  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "80fdae05a5cc7b52f7c53fe978cd68a93b04b5c8e1502ecd64defd351b20e14f",
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  "ladder_columns": [
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  60,
 
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  "arm": "CLEAN",
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
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+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 6,
7
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
8
  "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000006",
 
50
  "view.bcf": "5b221faf5cdbe929ce5f71e85acaad258c9152ca69f417fa5a3c35b20792601c",
51
  "view.bcf.csi": "f7084597661e0dad0aeac230a4cbb16fb174723be023997ff7edaa7ce5f8cbd6"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "80fdae05a5cc7b52f7c53fe978cd68a93b04b5c8e1502ecd64defd351b20e14f",
55
  "ladder_columns": [
56
  60,
method_inputs/a1/CONST_2K/r00000007/n32/meta.json CHANGED
@@ -2,7 +2,7 @@
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
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- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 7,
7
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
8
  "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000007",
@@ -50,7 +50,7 @@
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51
  "view.bcf.csi": "10183558d540f79096a221f4dca8e7f23daaebc73c22e668f4c249eeb37716a0"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "80fdae05a5cc7b52f7c53fe978cd68a93b04b5c8e1502ecd64defd351b20e14f",
55
  "ladder_columns": [
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  31,
 
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  "S": 14428,
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  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 7,
7
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
8
  "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000007",
 
50
  "view.bcf": "b664104c4f431598b9fb019fbc2d70ec6adc725cefda8e30d25112d733450825",
51
  "view.bcf.csi": "10183558d540f79096a221f4dca8e7f23daaebc73c22e668f4c249eeb37716a0"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "80fdae05a5cc7b52f7c53fe978cd68a93b04b5c8e1502ecd64defd351b20e14f",
55
  "ladder_columns": [
56
  31,
method_inputs/a1/CONST_2K/receipts/export_51933476.json CHANGED
@@ -1,25 +1,25 @@
1
  {
2
  "arm": "CLEAN",
3
- "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools",
4
  "dataset": "v2_a1_CONST_2K",
5
  "host": "cn604-18",
6
  "identity_scan": {
7
  "hits": 0,
8
  "lines_scanned": 104996,
9
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/receipts/identity_scan_51933476.json",
10
- "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl",
11
  "registry_size_bytes": 219776193,
12
- "sha256": "08138113c69aaca142cf7531436095c3c5f1f1bc0f55cd03516337c672aa0d72"
13
  },
14
  "job": "51933476",
15
- "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh",
16
  "n": [
17
  32
18
  ],
19
  "open_audit": {
20
- "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/receipts/open_audit_51933476.json",
21
  "production_files_opened": [
22
- "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl"
23
  ],
24
  "refused": 0
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  },
@@ -46,7 +46,7 @@
46
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
47
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
48
  "contig": "region_0",
49
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/n32",
50
  "files": {
51
  "multihetsep.txt": "eeb7086cbcf13fcbe598ff10ec8ed3e4975a3aa6da2195374317aaf4e5893de2",
52
  "phlash_contig.npz": "877b2f6753fc9892326cbc3a3fc45aed6673d673e480cd83b025f5fe4a734264",
@@ -54,7 +54,7 @@
54
  "view.bcf": "60adb1c424a6c22345ad55cf3d91dc57166e73c491bea4bb4f6b44ddbbc6d4cc",
55
  "view.bcf.csi": "b30146add2d98632cfabab924d7c00dbfde7e309841a878f0f83cc2e8bcb64c5"
56
  },
57
- "meta_sha256": "cddd48192bb112f36c240f46b5d43aa59f40040629ef5124670ee3637f126b94",
58
  "mu_for_tools": 1.2500000146076218e-08,
59
  "mu_source": "true constant (obs == true in CLEAN)",
60
  "n": 32,
@@ -85,7 +85,7 @@
85
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
86
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
87
  "contig": "region_1",
88
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000001/n32",
89
  "files": {
90
  "multihetsep.txt": "81d89a034d10e9c95cceeaa70c6a3c94c7e9e81855d50014dda96cfbca6e5a06",
91
  "phlash_contig.npz": "6a93d2da97009f30affeb3485619dbe3fa49c85d57066c3b735180042ce531a3",
@@ -93,7 +93,7 @@
93
  "view.bcf": "9f6b707f1f79c4f3b040fe7657ef1d67c5043f3117be5cd5e9a41de2cdef4af3",
94
  "view.bcf.csi": "17f066ec146a99309e4dd31375e0e6d3af02798c1aae6979c7a005aa2958ee0c"
95
  },
96
- "meta_sha256": "4f10d656b4f88e2a9b3656210084d650078969e3d8267238de3702dba060670b",
97
  "mu_for_tools": 1.2500000146076218e-08,
98
  "mu_source": "true constant (obs == true in CLEAN)",
99
  "n": 32,
@@ -124,7 +124,7 @@
124
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
125
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
126
  "contig": "region_2",
127
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000002/n32",
128
  "files": {
129
  "multihetsep.txt": "ebaaf311646a6ab01f565ef5147cd9b81bfb35c7c14bc4b424b4d8425d119821",
130
  "phlash_contig.npz": "2056379e30be4609752b8c7e4d3fc6950bfc98cbfaf1eda58234f9c10292312b",
@@ -132,7 +132,7 @@
132
  "view.bcf": "7b6413ee7e8ca4c8ad7dce4819560f7340624f7e19e2a60b998e1feb3a3bc80a",
133
  "view.bcf.csi": "05a6a7ad2698958098b89045d426ce9c7d1abab0ffb1cbd34b3da01ec7694224"
134
  },
135
- "meta_sha256": "bddccc8a4c6c390093fd3a3531bb1fc3148c7c6cba01a25823a103d75cd44ee9",
136
  "mu_for_tools": 1.2500000146076218e-08,
137
  "mu_source": "true constant (obs == true in CLEAN)",
138
  "n": 32,
@@ -163,7 +163,7 @@
163
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
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  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
165
  "contig": "region_3",
166
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000003/n32",
167
  "files": {
168
  "multihetsep.txt": "6b990912f0acd6cc69e6d6d081fe6d2a736f79c3522179523e542b616ede589a",
169
  "phlash_contig.npz": "20553f13b6ff7f72736e66a7d81052c9fb4e99fcca796dcb623859eecd2f8510",
@@ -171,7 +171,7 @@
171
  "view.bcf": "d7fc6ebbf525b655dbd430ba2ddccf32fe3d170e4accb4bf73a9a6c6ef4e9fb3",
172
  "view.bcf.csi": "a2dae87427d1ad02817b9cdda403356c72689306272aeca3386f91206e8ae7fd"
173
  },
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- "meta_sha256": "77039703aaad608c6a39dcc06517e744fed8d0ad6421c9e727de777a28e2e83b",
175
  "mu_for_tools": 1.2500000146076218e-08,
176
  "mu_source": "true constant (obs == true in CLEAN)",
177
  "n": 32,
@@ -202,7 +202,7 @@
202
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
203
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
204
  "contig": "region_4",
205
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000004/n32",
206
  "files": {
207
  "multihetsep.txt": "e2f90e5c53b8a4ecd3c01a32129325aec4043d9847ee137850bcc9d885635ea9",
208
  "phlash_contig.npz": "d6e1c944a6ca80013ea3609acedd92978da464154a5506b32cf94dff079c1f5f",
@@ -210,7 +210,7 @@
210
  "view.bcf": "4a3b575e77139c4c4ea47f8338cd5d04281e9c66407917d392b98b96afc4c9bc",
211
  "view.bcf.csi": "7995174affd7ef72a142e57f9bac401f55a867746d7cd713879df9c5d3b64b6a"
212
  },
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- "meta_sha256": "c99afe3f15a6b66a32135b918a0f6c419474275074c1fd552988ed4c254c849c",
214
  "mu_for_tools": 1.2500000146076218e-08,
215
  "mu_source": "true constant (obs == true in CLEAN)",
216
  "n": 32,
@@ -241,7 +241,7 @@
241
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
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  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
243
  "contig": "region_5",
244
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000005/n32",
245
  "files": {
246
  "multihetsep.txt": "e9569a8a219924eea340be8eaa89c990f6fa0a9472977b189e0045b0cd51ba1d",
247
  "phlash_contig.npz": "11a270ad234fecd299a69affb84cc2c25b88eb9f4a4867da9fbeb474de9bc8b7",
@@ -249,7 +249,7 @@
249
  "view.bcf": "5a46059b1a12c7c3e7eaa0f64a343fbf16024c8afb8439a678bd8c17dab0d6c7",
250
  "view.bcf.csi": "2118f830335f4afdf093959f6baa7ccf7adbedbe7adb0cffbb1a671770c3ee27"
251
  },
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- "meta_sha256": "50b35a56c2bf2d676deaddddca7c82eecf956e8bd8916afc5c082b20155e2a9e",
253
  "mu_for_tools": 1.2500000146076218e-08,
254
  "mu_source": "true constant (obs == true in CLEAN)",
255
  "n": 32,
@@ -280,7 +280,7 @@
280
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
281
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
282
  "contig": "region_6",
283
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000006/n32",
284
  "files": {
285
  "multihetsep.txt": "ce4465a03dbbda21593be8b5922512849eef2f8e391b81e034a78ca401b46976",
286
  "phlash_contig.npz": "f391b4f7a8304e39d2947370b8515852f23aa7a0daf046ef9a732a19f9835398",
@@ -288,7 +288,7 @@
288
  "view.bcf": "5b221faf5cdbe929ce5f71e85acaad258c9152ca69f417fa5a3c35b20792601c",
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  "view.bcf.csi": "f7084597661e0dad0aeac230a4cbb16fb174723be023997ff7edaa7ce5f8cbd6"
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  },
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- "meta_sha256": "fb1dfb29f17b1440e12a4c288ee10149a3269c43e8048d5416e9d3ae40ec07f0",
292
  "mu_for_tools": 1.2500000146076218e-08,
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  "mu_source": "true constant (obs == true in CLEAN)",
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  "n": 32,
@@ -319,7 +319,7 @@
319
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
320
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
321
  "contig": "region_7",
322
- "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000007/n32",
323
  "files": {
324
  "multihetsep.txt": "923caa968a7eec346298cde8078c9c8f759891d608091e13d123e43f6c639714",
325
  "phlash_contig.npz": "10fd9739915bf21cf176ba69214b3441ff05f967e878e24bc172a47d57d0c1e7",
@@ -327,7 +327,7 @@
327
  "view.bcf": "b664104c4f431598b9fb019fbc2d70ec6adc725cefda8e30d25112d733450825",
328
  "view.bcf.csi": "10183558d540f79096a221f4dca8e7f23daaebc73c22e668f4c249eeb37716a0"
329
  },
330
- "meta_sha256": "c08a72ff6acae38394b9d1cce99b7725b7dba8a0379da6b085a86ead95e3a493",
331
  "mu_for_tools": 1.2500000146076218e-08,
332
  "mu_source": "true constant (obs == true in CLEAN)",
333
  "n": 32,
 
1
  {
2
  "arm": "CLEAN",
3
+ "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools",
4
  "dataset": "v2_a1_CONST_2K",
5
  "host": "cn604-18",
6
  "identity_scan": {
7
  "hits": 0,
8
  "lines_scanned": 104996,
9
+ "path": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/receipts/identity_scan_51933476.json",
10
+ "registry_path": "$WORK/registry109k/raw_index.jsonl",
11
  "registry_size_bytes": 219776193,
12
+ "sha256": "31ee4062b163e5e14813c91f8f78967d1677875d06818893772624edf09d4f8d"
13
  },
14
  "job": "51933476",
15
+ "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh",
16
  "n": [
17
  32
18
  ],
19
  "open_audit": {
20
+ "log": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/receipts/open_audit_51933476.json",
21
  "production_files_opened": [
22
+ "$WORK/registry109k/raw_index.jsonl"
23
  ],
24
  "refused": 0
25
  },
 
46
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
47
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
48
  "contig": "region_0",
49
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/n32",
50
  "files": {
51
  "multihetsep.txt": "eeb7086cbcf13fcbe598ff10ec8ed3e4975a3aa6da2195374317aaf4e5893de2",
52
  "phlash_contig.npz": "877b2f6753fc9892326cbc3a3fc45aed6673d673e480cd83b025f5fe4a734264",
 
54
  "view.bcf": "60adb1c424a6c22345ad55cf3d91dc57166e73c491bea4bb4f6b44ddbbc6d4cc",
55
  "view.bcf.csi": "b30146add2d98632cfabab924d7c00dbfde7e309841a878f0f83cc2e8bcb64c5"
56
  },
57
+ "meta_sha256": "1a39ff2ee83d293e4d2505b4444c54ea24dac086044732bb5f304d9df4920b80",
58
  "mu_for_tools": 1.2500000146076218e-08,
59
  "mu_source": "true constant (obs == true in CLEAN)",
60
  "n": 32,
 
85
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
86
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
87
  "contig": "region_1",
88
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000001/n32",
89
  "files": {
90
  "multihetsep.txt": "81d89a034d10e9c95cceeaa70c6a3c94c7e9e81855d50014dda96cfbca6e5a06",
91
  "phlash_contig.npz": "6a93d2da97009f30affeb3485619dbe3fa49c85d57066c3b735180042ce531a3",
 
93
  "view.bcf": "9f6b707f1f79c4f3b040fe7657ef1d67c5043f3117be5cd5e9a41de2cdef4af3",
94
  "view.bcf.csi": "17f066ec146a99309e4dd31375e0e6d3af02798c1aae6979c7a005aa2958ee0c"
95
  },
96
+ "meta_sha256": "5a7bdca4ac95ad0ad59835a8502dae2ee450e6e67ef07d4ca8d2bc38d352db14",
97
  "mu_for_tools": 1.2500000146076218e-08,
98
  "mu_source": "true constant (obs == true in CLEAN)",
99
  "n": 32,
 
124
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
125
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
126
  "contig": "region_2",
127
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000002/n32",
128
  "files": {
129
  "multihetsep.txt": "ebaaf311646a6ab01f565ef5147cd9b81bfb35c7c14bc4b424b4d8425d119821",
130
  "phlash_contig.npz": "2056379e30be4609752b8c7e4d3fc6950bfc98cbfaf1eda58234f9c10292312b",
 
132
  "view.bcf": "7b6413ee7e8ca4c8ad7dce4819560f7340624f7e19e2a60b998e1feb3a3bc80a",
133
  "view.bcf.csi": "05a6a7ad2698958098b89045d426ce9c7d1abab0ffb1cbd34b3da01ec7694224"
134
  },
135
+ "meta_sha256": "e77fadcacbcf1bf5449662c05917fab18aac2ccb3eaf5677d77c16ba9a3ac887",
136
  "mu_for_tools": 1.2500000146076218e-08,
137
  "mu_source": "true constant (obs == true in CLEAN)",
138
  "n": 32,
 
163
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
164
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
165
  "contig": "region_3",
166
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000003/n32",
167
  "files": {
168
  "multihetsep.txt": "6b990912f0acd6cc69e6d6d081fe6d2a736f79c3522179523e542b616ede589a",
169
  "phlash_contig.npz": "20553f13b6ff7f72736e66a7d81052c9fb4e99fcca796dcb623859eecd2f8510",
 
171
  "view.bcf": "d7fc6ebbf525b655dbd430ba2ddccf32fe3d170e4accb4bf73a9a6c6ef4e9fb3",
172
  "view.bcf.csi": "a2dae87427d1ad02817b9cdda403356c72689306272aeca3386f91206e8ae7fd"
173
  },
174
+ "meta_sha256": "9f0a7a6fd358e10d87d7e6177c263cd9f85a22e75355013697a310730d1724d2",
175
  "mu_for_tools": 1.2500000146076218e-08,
176
  "mu_source": "true constant (obs == true in CLEAN)",
177
  "n": 32,
 
202
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
203
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
204
  "contig": "region_4",
205
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000004/n32",
206
  "files": {
207
  "multihetsep.txt": "e2f90e5c53b8a4ecd3c01a32129325aec4043d9847ee137850bcc9d885635ea9",
208
  "phlash_contig.npz": "d6e1c944a6ca80013ea3609acedd92978da464154a5506b32cf94dff079c1f5f",
 
210
  "view.bcf": "4a3b575e77139c4c4ea47f8338cd5d04281e9c66407917d392b98b96afc4c9bc",
211
  "view.bcf.csi": "7995174affd7ef72a142e57f9bac401f55a867746d7cd713879df9c5d3b64b6a"
212
  },
213
+ "meta_sha256": "fa931809d5d4528c6b9b706d00e99441eaaf6a4d52adc5b203367564c43f99a6",
214
  "mu_for_tools": 1.2500000146076218e-08,
215
  "mu_source": "true constant (obs == true in CLEAN)",
216
  "n": 32,
 
241
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
242
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
243
  "contig": "region_5",
244
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000005/n32",
245
  "files": {
246
  "multihetsep.txt": "e9569a8a219924eea340be8eaa89c990f6fa0a9472977b189e0045b0cd51ba1d",
247
  "phlash_contig.npz": "11a270ad234fecd299a69affb84cc2c25b88eb9f4a4867da9fbeb474de9bc8b7",
 
249
  "view.bcf": "5a46059b1a12c7c3e7eaa0f64a343fbf16024c8afb8439a678bd8c17dab0d6c7",
250
  "view.bcf.csi": "2118f830335f4afdf093959f6baa7ccf7adbedbe7adb0cffbb1a671770c3ee27"
251
  },
252
+ "meta_sha256": "8e8ce207e4fce4e8c8bfa232a59d0c4188bc86a4b3df03a643f00f409805f930",
253
  "mu_for_tools": 1.2500000146076218e-08,
254
  "mu_source": "true constant (obs == true in CLEAN)",
255
  "n": 32,
 
280
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
281
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
282
  "contig": "region_6",
283
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000006/n32",
284
  "files": {
285
  "multihetsep.txt": "ce4465a03dbbda21593be8b5922512849eef2f8e391b81e034a78ca401b46976",
286
  "phlash_contig.npz": "f391b4f7a8304e39d2947370b8515852f23aa7a0daf046ef9a732a19f9835398",
 
288
  "view.bcf": "5b221faf5cdbe929ce5f71e85acaad258c9152ca69f417fa5a3c35b20792601c",
289
  "view.bcf.csi": "f7084597661e0dad0aeac230a4cbb16fb174723be023997ff7edaa7ce5f8cbd6"
290
  },
291
+ "meta_sha256": "1e00041140bb5acd61fa9eb9c203e53a628e9c235554eae9a35f2672fc9fa2d7",
292
  "mu_for_tools": 1.2500000146076218e-08,
293
  "mu_source": "true constant (obs == true in CLEAN)",
294
  "n": 32,
 
319
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
320
  "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0",
321
  "contig": "region_7",
322
+ "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000007/n32",
323
  "files": {
324
  "multihetsep.txt": "923caa968a7eec346298cde8078c9c8f759891d608091e13d123e43f6c639714",
325
  "phlash_contig.npz": "10fd9739915bf21cf176ba69214b3441ff05f967e878e24bc172a47d57d0c1e7",
 
327
  "view.bcf": "b664104c4f431598b9fb019fbc2d70ec6adc725cefda8e30d25112d733450825",
328
  "view.bcf.csi": "10183558d540f79096a221f4dca8e7f23daaebc73c22e668f4c249eeb37716a0"
329
  },
330
+ "meta_sha256": "fbbc1ae4441813a457b3b6c5e96ef1897d38e133a729e2d442a27448da9935f9",
331
  "mu_for_tools": 1.2500000146076218e-08,
332
  "mu_source": "true constant (obs == true in CLEAN)",
333
  "n": 32,
method_inputs/a1/CONST_2K/receipts/identity_scan_51933476.json CHANGED
@@ -6,7 +6,7 @@
6
  "plan_sha256s": [
7
  "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819"
8
  ],
9
- "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl",
10
  "registry_size_bytes": 219776193,
11
  "schema": "bench_h2h.registry_identity_scan.v1",
12
  "utc": "2026-09-16T11:04:57Z"
 
6
  "plan_sha256s": [
7
  "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819"
8
  ],
9
+ "registry_path": "$WORK/registry109k/raw_index.jsonl",
10
  "registry_size_bytes": 219776193,
11
  "schema": "bench_h2h.registry_identity_scan.v1",
12
  "utc": "2026-09-16T11:04:57Z"
method_inputs/a1/CONST_2K/receipts/open_audit_51933476.json CHANGED
@@ -2,671 +2,671 @@
2
  "opened": [
3
  {
4
  "mode": "r",
5
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.done.json"
6
  },
7
  {
8
  "mode": "r",
9
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.done.json"
10
  },
11
  {
12
  "mode": "r",
13
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000002.done.json"
14
  },
15
  {
16
  "mode": "r",
17
- "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl"
18
  },
19
  {
20
  "mode": "w",
21
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/receipts/identity_scan_51933476.json"
22
  },
23
  {
24
  "mode": "r",
25
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.done.json"
26
  },
27
  {
28
  "mode": "r",
29
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz"
30
  },
31
  {
32
  "mode": "r",
33
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz"
34
  },
35
  {
36
  "mode": "r",
37
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/sample_identities.jsonl"
38
  },
39
  {
40
  "mode": "r",
41
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz"
42
  },
43
  {
44
  "mode": "r",
45
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz"
46
  },
47
  {
48
  "mode": "w",
49
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/view.vcf"
50
  },
51
  {
52
  "mode": "w",
53
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/phlash_contig.npz"
54
  },
55
  {
56
  "mode": "w",
57
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/sfs_unfolded.npy"
58
  },
59
  {
60
  "mode": "w",
61
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/multihetsep.txt"
62
  },
63
  {
64
  "mode": "r",
65
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/view.bcf"
66
  },
67
  {
68
  "mode": "r",
69
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/phlash_contig.npz"
70
  },
71
  {
72
  "mode": "r",
73
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/sfs_unfolded.npy"
74
  },
75
  {
76
  "mode": "w",
77
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/meta.json"
78
  },
79
  {
80
  "mode": "r",
81
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/n32/phlash_contig.npz"
82
  },
83
  {
84
  "mode": "r",
85
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/n32/sfs_unfolded.npy"
86
  },
87
  {
88
  "mode": "r",
89
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/n32/phlash_contig.npz"
90
  },
91
  {
92
  "mode": "r",
93
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/n32/sfs_unfolded.npy"
94
  },
95
  {
96
  "mode": "r",
97
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/n32/view.bcf"
98
  },
99
  {
100
  "mode": "w",
101
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/v0_n32.json"
102
  },
103
  {
104
  "mode": "r",
105
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.done.json"
106
  },
107
  {
108
  "mode": "r",
109
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz"
110
  },
111
  {
112
  "mode": "r",
113
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz"
114
  },
115
  {
116
  "mode": "r",
117
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/sample_identities.jsonl"
118
  },
119
  {
120
  "mode": "r",
121
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz"
122
  },
123
  {
124
  "mode": "r",
125
- "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz"
126
  },
127
  {
128
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129
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206
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207
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208
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209
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210
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211
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212
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213
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214
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215
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216
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217
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218
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219
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220
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221
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222
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223
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224
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225
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226
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227
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228
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229
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230
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231
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232
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234
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235
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236
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238
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239
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240
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242
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243
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244
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246
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247
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248
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250
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251
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252
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253
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254
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255
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256
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258
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259
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260
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261
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262
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263
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264
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266
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267
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268
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270
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271
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272
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274
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275
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276
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277
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278
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279
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280
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282
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283
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284
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286
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287
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288
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290
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291
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292
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294
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295
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296
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298
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299
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300
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302
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303
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304
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306
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307
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308
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310
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311
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312
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314
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315
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316
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317
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318
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319
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320
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321
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322
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323
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324
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325
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326
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327
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328
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330
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331
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332
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333
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334
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335
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336
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337
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338
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339
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340
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341
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342
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343
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344
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345
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346
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347
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348
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349
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350
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351
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352
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353
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354
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355
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356
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357
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358
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359
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360
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361
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363
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364
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365
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366
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367
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368
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369
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370
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371
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372
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373
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374
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375
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376
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377
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378
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379
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380
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381
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382
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383
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384
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385
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386
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387
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388
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389
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390
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391
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392
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394
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395
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396
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397
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398
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399
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400
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402
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404
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405
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406
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407
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408
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409
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410
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411
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412
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413
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414
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415
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416
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417
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418
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420
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421
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423
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424
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425
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428
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429
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430
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431
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432
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436
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437
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438
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440
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441
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456
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460
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508
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512
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536
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540
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541
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556
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569
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580
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581
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584
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585
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592
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600
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601
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  60,
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@@ -2,7 +2,7 @@
2
  "S": 348582,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
- "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_50K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 7,
7
  "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717",
8
  "canonical_id": "78a7157d44fb3bc5871cdfc34c4bce2499e75a598eb6a395b9f61b95c620f797:00000007",
@@ -50,7 +50,7 @@
50
  "view.bcf": "1502eee7bbfbde3980599a4fc69c2cdf24c62da0c174d6b3c5f10fce8a1a6380",
51
  "view.bcf.csi": "d9b9cf2a776df2cf0258b8326662f09604ebc45a88025fd03df74167313633a6"
52
  },
53
- "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "5a29f32bd017f660230eb4967743c30a3840697dbbf7c5ffe3f34bb1b662c5ca",
55
  "ladder_columns": [
56
  31,
 
2
  "S": 348582,
3
  "arm": "CLEAN",
4
  "bcftools_version": "bcftools 1.16-90-gab5de54-dirty",
5
+ "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_50K/chain0_level32/unphased_evidence_cache.npz",
6
  "cache_row": 7,
7
  "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717",
8
  "canonical_id": "78a7157d44fb3bc5871cdfc34c4bce2499e75a598eb6a395b9f61b95c620f797:00000007",
 
50
  "view.bcf": "1502eee7bbfbde3980599a4fc69c2cdf24c62da0c174d6b3c5f10fce8a1a6380",
51
  "view.bcf.csi": "d9b9cf2a776df2cf0258b8326662f09604ebc45a88025fd03df74167313633a6"
52
  },
53
+ "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000001.npz",
54
  "fragment_sha256": "5a29f32bd017f660230eb4967743c30a3840697dbbf7c5ffe3f34bb1b662c5ca",
55
  "ladder_columns": [
56
  31,