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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
fireprotdb:6559 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,559 | train | mutant | 8,095 | 117 | 8,822 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105I|V148L|I154V|I174V | V105I|V148L|I154V|I174V | 4 | 4 | 0 | 0 | 105 | V | I | 6 | CONSERVATION | 1STN | 140 | null | 105|148|154|174 | A | E|H | true | false | 4.395035 | 11.423705 | 17,247 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23I 1STN_A:V66L 1STN_A:I72V 1STN_A:I92V | null | null | 4.8 | 0.6 | null | null | null | 0.74 | 6.53 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 985 | ARTICLE | Packing is a key selection factor in the evolution of protein hydrophobic cores. | 2,001 | 10.1021/bi011776v | 11735410 | Biochemistry;40;15280-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63639,"numValue":4.8,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63640,"numValue":0.6,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63641,"numValue":6.53,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63642,"numValue":0.74,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6560 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,560 | train | mutant | 8,096 | 117 | 8,823 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105I|L107V|I154V|I174V|V181L | V105I|L107V|I154V|I174V|V181L | 5 | 5 | 0 | 0 | 105 | V | I | 6 | CONSERVATION | 1STN | 140 | null | 105|107|154|174|181 | A | E|H | true | false | 3.084345 | 10.181821 | 17,248 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23I 1STN_A:L25V 1STN_A:I72V 1STN_A:I92V 1STN_A:V99L | null | null | 2.4 | 3 | null | null | null | 0.33 | 7.25 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 985 | ARTICLE | Packing is a key selection factor in the evolution of protein hydrophobic cores. | 2,001 | 10.1021/bi011776v | 11735410 | Biochemistry;40;15280-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63644,"numValue":2.4,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63645,"numValue":3.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63646,"numValue":7.25,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63647,"numValue":0.33,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6561 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,561 | train | mutant | 8,097 | 117 | 8,824 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105I|L107V|I154V|I174V|V181I | V105I|L107V|I154V|I174V|V181I | 5 | 5 | 0 | 0 | 105 | V | I | 6 | CONSERVATION | 1STN | 140 | null | 105|107|154|174|181 | A | E|H | true | false | 3.084345 | 10.181821 | 17,249 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23I 1STN_A:L25V 1STN_A:I72V 1STN_A:I92V 1STN_A:V99I | null | null | 2.7 | 2.7 | null | null | null | 0.39 | 7.05 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 985 | ARTICLE | Packing is a key selection factor in the evolution of protein hydrophobic cores. | 2,001 | 10.1021/bi011776v | 11735410 | Biochemistry;40;15280-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63649,"numValue":2.7,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63650,"numValue":2.7,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63651,"numValue":7.05,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63652,"numValue":0.39,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6562 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,562 | train | mutant | 8,098 | 117 | 8,825 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105I|L107I|V148L|I154V|I174V | V105I|L107I|V148L|I154V|I174V | 5 | 5 | 0 | 0 | 105 | V | I | 6 | CONSERVATION | 1STN | 140 | null | 105|107|148|154|174 | A | E|H | true | false | 3.516028 | 11.466964 | 17,250 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23I 1STN_A:L25I 1STN_A:V66L 1STN_A:I72V 1STN_A:I92V | null | null | 3.1 | 2.3 | null | null | null | 0.47 | 6.53 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 985 | ARTICLE | Packing is a key selection factor in the evolution of protein hydrophobic cores. | 2,001 | 10.1021/bi011776v | 11735410 | Biochemistry;40;15280-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63654,"numValue":3.1,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63655,"numValue":2.3,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63656,"numValue":6.53,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63657,"numValue":0.47,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6563 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,563 | train | mutant | 8,099 | 117 | 8,826 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105L|L107V|V148L|I154V|I174V | V105L|L107V|V148L|I154V|I174V | 5 | 5 | 0 | 0 | 105 | V | L | 6 | CONSERVATION | 1STN | 140 | null | 105|107|148|154|174 | A | E|H | true | false | 3.516028 | 11.466964 | 17,251 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23L 1STN_A:L25V 1STN_A:V66L 1STN_A:I72V 1STN_A:I92V | null | null | 3.2 | 2.2 | null | null | null | 0.45 | 7.12 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 985 | ARTICLE | Packing is a key selection factor in the evolution of protein hydrophobic cores. | 2,001 | 10.1021/bi011776v | 11735410 | Biochemistry;40;15280-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63659,"numValue":3.2,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63660,"numValue":2.2,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63661,"numValue":7.12,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63662,"numValue":0.45,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6564 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,564 | train | mutant | 8,100 | 117 | 8,827 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105I|L107I | V105I|L107I | 2 | 2 | 0 | 0 | 105 | V | I | 6 | CONSERVATION | 1STN | 140 | null | 105|107 | A | E | true | false | 0.268742 | 12.19 | 17,252 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23I 1STN_A:L25I | null | null | 3.7 | 1.7 | null | null | null | 0.6 | 0.93 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63664,"numValue":3.7,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63665,"numValue":1.7,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63666,"numValue":0.93,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63667,"numValue":0.6,"references":[],"st... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6565 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,565 | train | mutant | 8,101 | 117 | 8,828 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105I|L107V | V105I|L107V | 2 | 2 | 0 | 0 | 105 | V | I | 6 | CONSERVATION | 1STN | 140 | null | 105|107 | A | E | true | false | 0.268742 | 12.19 | 17,253 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23I 1STN_A:L25V | null | null | 4 | 1.4 | null | null | null | 0.63 | 0.95 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63669,"numValue":4.0,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63670,"numValue":1.4,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63671,"numValue":0.95,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63672,"numValue":0.63,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6566 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,566 | train | mutant | 8,102 | 117 | 8,829 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105L|L107I | V105L|L107I | 2 | 2 | 0 | 0 | 105 | V | L | 6 | CONSERVATION | 1STN | 140 | null | 105|107 | A | E | true | false | 0.268742 | 12.19 | 17,254 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23L 1STN_A:L25I | null | null | 3.9 | 1.5 | null | null | null | 0.6 | 0.97 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63674,"numValue":3.9,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63675,"numValue":1.5,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63676,"numValue":0.97,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63677,"numValue":0.6,"references":[],"st... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6567 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,567 | train | mutant | 8,103 | 117 | 8,830 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105L|L107V | V105L|L107V | 2 | 2 | 0 | 0 | 105 | V | L | 6 | CONSERVATION | 1STN | 140 | null | 105|107 | A | E | true | false | 0.268742 | 12.19 | 17,255 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23L 1STN_A:L25V | null | null | 3.6 | 1.8 | null | null | null | 0.53 | 1.01 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63679,"numValue":3.6,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63680,"numValue":1.8,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63681,"numValue":1.01,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63682,"numValue":0.53,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6568 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,568 | train | mutant | 8,112 | 117 | 8,839 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105I|V148I | V105I|V148I | 2 | 2 | 0 | 0 | 105 | V | I | 6 | CONSERVATION | 1STN | 140 | null | 105|148 | A | E|H | true | false | 1.616692 | 12.914286 | 17,264 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23I 1STN_A:V66I | null | null | 3.9 | 1.5 | null | null | null | 0.75 | 0.78 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63724,"numValue":3.9,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63725,"numValue":1.5,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63726,"numValue":0.78,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63727,"numValue":0.75,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6569 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,569 | train | mutant | 8,113 | 117 | 8,840 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105I|V148L | V105I|V148L | 2 | 2 | 0 | 0 | 105 | V | I | 6 | CONSERVATION | 1STN | 140 | null | 105|148 | A | E|H | true | false | 1.616692 | 12.914286 | 17,265 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23I 1STN_A:V66L | null | null | 4.4 | 1 | null | null | null | 0.89 | 0.74 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63729,"numValue":4.4,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63730,"numValue":1.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63731,"numValue":0.74,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63732,"numValue":0.89,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6570 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,570 | train | mutant | 8,114 | 117 | 8,841 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105L|V148I | V105L|V148I | 2 | 2 | 0 | 0 | 105 | V | L | 6 | CONSERVATION | 1STN | 140 | null | 105|148 | A | E|H | true | false | 1.616692 | 12.914286 | 17,266 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23L 1STN_A:V66I | null | null | 3.9 | 1.5 | null | null | null | 0.67 | 0.86 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63734,"numValue":3.9,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63735,"numValue":1.5,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63736,"numValue":0.86,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63737,"numValue":0.67,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6571 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,571 | train | mutant | 8,115 | 117 | 8,842 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105L|V148L | V105L|V148L | 2 | 2 | 0 | 0 | 105 | V | L | 6 | CONSERVATION | 1STN | 140 | null | 105|148 | A | E|H | true | false | 1.616692 | 12.914286 | 17,267 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23L 1STN_A:V66L | null | null | 4.3 | 1.1 | null | null | null | 0.78 | 0.83 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63739,"numValue":4.3,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63740,"numValue":1.1,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63741,"numValue":0.83,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63742,"numValue":0.78,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6572 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,572 | train | mutant | 8,120 | 117 | 8,847 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105I|I154L | V105I|I154L | 2 | 2 | 0 | 0 | 105 | V | I | 6 | CONSERVATION | 1STN | 140 | null | 105|154 | A | E | true | false | 6.971821 | 11.65125 | 17,272 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23I 1STN_A:I72L | null | null | 4.9 | 0.5 | null | null | null | 0.8 | 0.91 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63764,"numValue":4.9,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63765,"numValue":0.5,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63766,"numValue":0.91,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63767,"numValue":0.8,"references":[],"st... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6573 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,573 | train | mutant | 8,121 | 117 | 8,848 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105I|I154V | V105I|I154V | 2 | 2 | 0 | 0 | 105 | V | I | 6 | CONSERVATION | 1STN | 140 | null | 105|154 | A | E | true | false | 6.971821 | 11.65125 | 17,273 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23I 1STN_A:I72V | null | null | 4.3 | 1.1 | null | null | null | 0.64 | 1.01 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63769,"numValue":4.3,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63770,"numValue":1.1,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63771,"numValue":1.01,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63772,"numValue":0.64,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6574 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,574 | train | mutant | 8,122 | 117 | 8,849 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105L|I154L | V105L|I154L | 2 | 2 | 0 | 0 | 105 | V | L | 6 | CONSERVATION | 1STN | 140 | null | 105|154 | A | E | true | false | 6.971821 | 11.65125 | 17,274 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23L 1STN_A:I72L | null | null | 5 | 0.4 | null | null | null | 0.79 | 0.95 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63774,"numValue":5.0,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63775,"numValue":0.4,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63776,"numValue":0.95,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63777,"numValue":0.79,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6575 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,575 | train | mutant | 8,123 | 117 | 8,850 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | V105L|I154V | V105L|I154V | 2 | 2 | 0 | 0 | 105 | V | L | 6 | CONSERVATION | 1STN | 140 | null | 105|154 | A | E | true | false | 6.971821 | 11.65125 | 17,275 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:V23L 1STN_A:I72V | null | null | 4.3 | 1.1 | null | null | null | 0.62 | 1.04 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63779,"numValue":4.3,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63780,"numValue":1.1,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63781,"numValue":1.04,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63782,"numValue":0.62,"references":[],"s... | [{"id":7875,"numValue":6.0,"position":105,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6576 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,576 | train | mutant | 1,603 | 117 | 1,803 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | K106G | K106G | 1 | 1 | 0 | 0 | 106 | K | G | 5 | CONSERVATION | 1STN | 140 | null | 106 | A | E | false | false | 73.299275 | 23.723334 | 3,006 | ProTherm | 7 | DSC | Thermal | Sodium phosphate | 20 mM | null | NaCl | 100 mM | 1STN_A:K24G | 47.9 | -6.3 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | yes | TM|DTM|REVERSIBILITY | Saraboji_S2204.csv|STRUM_Q3421.csv|AUTOMUTE_S1749.csv|Saraboji_S1791.csv|AUTOMUTE_S1962.csv | PH|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 268 | ARTICLE | Energetics of denaturation and m values of staphylococcal nuclease mutants. | 1,995 | 10.1021/bi00006a025 | 7849061 | Biochemistry;34;2034-41 | 2 | Privalov P L|Carra J H | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":null,"strValue":"DSC","type":"MEASURE"},{"numValue":null,"strValue":"Thermal","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"20 mM","type":"BUFFER_CONC"},{"numValue":null,"strValue":"NaCl","type":"IO... | [{"datasets":["Saraboji_S2204.csv","STRUM_Q3421.csv"],"id":10909,"numValue":47.9,"references":[],"strValue":null,"type":"TM"},{"datasets":["AUTOMUTE_S1749.csv","Saraboji_S1791.csv","Saraboji_S2204.csv","STRUM_Q3421.csv"],"id":10910,"numValue":-6.3,"references":[],"strValue":null,"type":"DTM"},{"datasets":["AUTOMUTE_S19... | [{"id":7876,"numValue":5.0,"position":106,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6577 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,577 | train | mutant | 1,603 | 117 | 1,803 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | K106G | K106G | 1 | 1 | 0 | 0 | 106 | K | G | 5 | CONSERVATION | 1STN | 140 | null | 106 | A | E | false | false | 73.299275 | 23.723334 | 12,861 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:K24G | null | null | 4.4 | 1.2 | null | null | null | 0.51 | 1.23 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 827 | ARTICLE | Contributions of the ionizable amino acids to the stability of staphylococcal nuclease. | 1,996 | 10.1021/bi960171+ | 8639591 | Biochemistry;35;6443-9 | 3 | Shortle D|Garcia-Moreno B|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":46821,"numValue":4.4,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":46822,"numValue":1.2,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":46823,"numValue":1.23,"references":[],"strValue":nu... | [{"id":7876,"numValue":5.0,"position":106,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6578 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,578 | train | mutant | 5,987 | 117 | 6,557 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | K106A | K106A | 1 | 1 | 0 | 0 | 106 | K | A | 5 | CONSERVATION | 1STN | 140 | null | 106 | A | E | false | false | 73.299275 | 23.723334 | 12,860 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:K24A | null | null | 5.4 | 0.2 | null | null | null | 0.73 | 1.06 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv|SAAFEC_S983.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 827 | ARTICLE | Contributions of the ionizable amino acids to the stability of staphylococcal nuclease. | 1,996 | 10.1021/bi960171+ | 8639591 | Biochemistry;35;6443-9 | 3 | Shortle D|Garcia-Moreno B|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":46816,"numValue":5.4,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv","SAAFEC_S983.csv"],"id":46817,"numValue":0.2,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":46818,"numValue":1.06,"references... | [{"id":7876,"numValue":5.0,"position":106,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6579 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,579 | train | mutant | 6,245 | 117 | 6,840 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | K106F | K106F | 1 | 1 | 0 | 0 | 106 | K | F | 5 | CONSERVATION | 1STN | 140 | null | 106 | A | E | false | false | 73.299275 | 23.723334 | 13,334 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:K24F | null | null | 4.9 | 0.6 | null | null | null | 0.8 | 0.93 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv|SAAFEC_S983.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 845 | ARTICLE | Stability effects of increasing the hydrophobicity of solvent-exposed side chains in staphylococcal nuclease. | 1,998 | 10.1021/bi9725069 | 9578580 | Biochemistry;37;6939-48 | 4 | Stites W E|Schwehm J M|Kristyanne E S|Biggers C C | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":49025,"numValue":4.9,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv","SAAFEC_S983.csv"],"id":49026,"numValue":0.6,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":49027,"numValue":0.93,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":4902... | [{"id":7876,"numValue":5.0,"position":106,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6581 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,581 | train | mutant | 107 | 117 | 118 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107A | L107A | 1 | 1 | 0 | 0 | 107 | L | A | 7 | CONSERVATION | 1STN | 140 | null | 107 | A | E | true | false | 0 | 11.64 | 219 | ProTherm | 5 | DSC | Thermal | phosphate | 0.05 M | null | NaCl | 0.1 M | 1STN_A:L25A | 31.2 | -15.8 | null | null | 63 | 2.5 | null | null | null | null | null | null | null | null | null | null | yes | TM|DTM|DH|DCP|REVERSIBILITY | AUTOMUTE_S1749.csv|Saraboji_S1791.csv | PH|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 16 | ARTICLE | Thermal unfolding of staphylococcal nuclease and several mutant forms thereof studied by differential scanning calorimetry. | 1,993 | 10.1002/pro.5560020408 | 8518730 | Protein Sci;2;567-76 | 3 | Tanaka A|Sturtevant J M|Flanagan J | [{"numValue":5.0,"strValue":null,"type":"PH"},{"numValue":null,"strValue":"DSC","type":"MEASURE"},{"numValue":null,"strValue":"Thermal","type":"METHOD"},{"numValue":null,"strValue":"phosphate","type":"BUFFER"},{"numValue":null,"strValue":"0.05 M","type":"BUFFER_CONC"},{"numValue":null,"strValue":"NaCl","type":"ION"},{"... | [{"datasets":[],"id":911,"numValue":31.2,"references":[],"strValue":null,"type":"TM"},{"datasets":["AUTOMUTE_S1749.csv","Saraboji_S1791.csv"],"id":912,"numValue":-15.8,"references":[],"strValue":null,"type":"DTM"},{"datasets":[],"id":913,"numValue":63.0,"references":[],"strValue":null,"type":"DH"},{"datasets":[],"id":9... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6582 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,582 | train | mutant | 107 | 117 | 118 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107A | L107A | 1 | 1 | 0 | 0 | 107 | L | A | 7 | CONSERVATION | 1STN | 140 | null | 107 | A | E | true | false | 0 | 11.64 | 7,603 | ProTherm | 7 | DSC | Thermal | phosphate | 0.05 M | 51.4 | NaCl | 0.1 M | 1STN_A:L25A | null | null | null | 2.6 | null | 2.5 | null | null | null | null | null | null | null | null | null | null | yes | DCP|DDG|REVERSIBILITY | capriotti_S1615_map.csv|khan_protherm_data_mapped.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 16 | ARTICLE | Thermal unfolding of staphylococcal nuclease and several mutant forms thereof studied by differential scanning calorimetry. | 1,993 | 10.1002/pro.5560020408 | 8518730 | Protein Sci;2;567-76 | 3 | Tanaka A|Sturtevant J M|Flanagan J | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":51.4,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"DSC","type":"MEASURE"},{"numValue":null,"strValue":"Thermal","type":"METHOD"},{"numValue":null,"strValue":"phosphate","type":"BUFFER"},{"numValue":null,"strValue":"0.05 M","type":"BUFFER... | [{"datasets":[],"id":26263,"numValue":2.5,"references":[],"strValue":null,"type":"DCP"},{"datasets":["capriotti_S1615_map.csv","khan_protherm_data_mapped.csv"],"id":26264,"numValue":2.6,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":26265,"numValue":null,"references":[],"strValue":"yes","type":"REVER... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6583 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,583 | train | mutant | 107 | 117 | 118 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107A | L107A | 1 | 1 | 0 | 0 | 107 | L | A | 7 | CONSERVATION | 1STN | 140 | null | 107 | A | E | true | false | 0 | 11.64 | 7,790 | ProTherm | 5 | DSC | Thermal | phosphate | 0.05 M | 47 | NaCl | 0.1 M | 1STN_A:L25A | null | null | null | 2.8 | null | 2.5 | null | null | null | null | null | null | null | null | null | null | yes | DCP|DDG|REVERSIBILITY | capriotti_S1615_map.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 16 | ARTICLE | Thermal unfolding of staphylococcal nuclease and several mutant forms thereof studied by differential scanning calorimetry. | 1,993 | 10.1002/pro.5560020408 | 8518730 | Protein Sci;2;567-76 | 3 | Tanaka A|Sturtevant J M|Flanagan J | [{"numValue":5.0,"strValue":null,"type":"PH"},{"numValue":47.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"DSC","type":"MEASURE"},{"numValue":null,"strValue":"Thermal","type":"METHOD"},{"numValue":null,"strValue":"phosphate","type":"BUFFER"},{"numValue":null,"strValue":"0.05 M","type":"BUFFER... | [{"datasets":[],"id":26707,"numValue":2.5,"references":[],"strValue":null,"type":"DCP"},{"datasets":["capriotti_S1615_map.csv"],"id":26708,"numValue":2.8,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":26709,"numValue":null,"references":[],"strValue":"yes","type":"REVERSIBILITY"}] | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6584 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,584 | train | mutant | 107 | 117 | 118 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107A | L107A | 1 | 1 | 0 | 0 | 107 | L | A | 7 | CONSERVATION | 1STN | 140 | null | 107 | A | E | true | false | 0 | 11.64 | 13,407 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25A | null | null | 2.78 | 2.7 | null | null | null | 0.3 | 1.12 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 850 | ARTICLE | Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease. | 1,990 | 10.1021/bi00487a007 | 2261461 | Biochemistry;29;8033-41 | 3 | Shortle D|Stites W E|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":49383,"numValue":2.78,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":49384,"numValue":2.7,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":49385,"numValue":1.12,"references":[],"strValue":n... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6585 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,585 | train | mutant | 5,915 | 117 | 6,485 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107I | L107I | 1 | 1 | 0 | 0 | 107 | L | I | 7 | CONSERVATION | 1STN | 140 | null | 107 | A | E | true | false | 0 | 11.64 | 12,759 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25I | null | null | 3.7 | 1.7 | null | null | null | 0.52 | 7.05 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 821 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by exchange of valines, isoleucines, and leucines. | 2,001 | 10.1021/bi011267t | 11705391 | Biochemistry;40;13998-4003 | 6 | Chen J|Stites W E|Spencer D S|Byrne M P|Holder J B|Bennett A F | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":46322,"numValue":3.7,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":46323,"numValue":1.7,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":46324,"numValue":7.05,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":46325,"numValue":0.52,... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6586 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,586 | train | mutant | 5,916 | 117 | 6,486 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107V | L107V | 1 | 1 | 0 | 0 | 107 | L | V | 7 | CONSERVATION | 1STN | 140 | null | 107 | A | E | true | false | 0 | 11.64 | 12,760 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25V | null | null | 3.6 | 1.8 | null | null | null | 0.53 | 6.89 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 821 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by exchange of valines, isoleucines, and leucines. | 2,001 | 10.1021/bi011267t | 11705391 | Biochemistry;40;13998-4003 | 6 | Chen J|Stites W E|Spencer D S|Byrne M P|Holder J B|Bennett A F | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":46327,"numValue":3.6,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":46328,"numValue":1.8,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":46329,"numValue":6.89,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":46330,"numValue":0.53,... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6587 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,587 | train | mutant | 6,203 | 117 | 6,797 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107E | L107E | 1 | 1 | 0 | 0 | 107 | L | E | 7 | CONSERVATION | 1STN | 140 | null | 107 | A | E | true | false | 0 | 11.64 | 13,165 | ProTherm | 3.9 | Fluorescence | GdnHCl | HEPES | 10 mM | 20 | NaCl | 100 mM | 1STN_A:L25E | null | null | 3.5 | 5.9 | null | null | null | 0.7 | 5 | null | null | null | null | null | null | null | Unknown | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 840 | ARTICLE | Charges in the hydrophobic interior of proteins. | 2,010 | 10.1073/pnas.1004213107 | 20798341 | Proc Natl Acad Sci U S A;107;16096-100 | 5 | Isom Daniel G|Garc?a-Moreno E Bertrand|Casta?eda Carlos A|Cannon Brian R|Velu Priya D | [{"numValue":3.9,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"HEPES","type":"BUFFER"},{"numValue":null,"strValue":"10 mM","type":"BUF... | [{"datasets":[],"id":48207,"numValue":3.5,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":48208,"numValue":5.9,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48209,"numValue":5.0,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48210,"numValue":0.7,"references":[],"str... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6588 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,588 | train | mutant | 6,203 | 117 | 6,797 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107E | L107E | 1 | 1 | 0 | 0 | 107 | L | E | 7 | CONSERVATION | 1STN | 140 | null | 107 | A | E | true | false | 0 | 11.64 | 13,166 | ProTherm | 5 | Fluorescence | GdnHCl | HEPES | 10 mM | 20 | NaCl | 100 mM | 1STN_A:L25E | null | null | 5.4 | 6.4 | null | null | null | 0.9 | 5.8 | null | null | null | null | null | null | null | Unknown | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 840 | ARTICLE | Charges in the hydrophobic interior of proteins. | 2,010 | 10.1073/pnas.1004213107 | 20798341 | Proc Natl Acad Sci U S A;107;16096-100 | 5 | Isom Daniel G|Garc?a-Moreno E Bertrand|Casta?eda Carlos A|Cannon Brian R|Velu Priya D | [{"numValue":5.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"HEPES","type":"BUFFER"},{"numValue":null,"strValue":"10 mM","type":"BUF... | [{"datasets":[],"id":48212,"numValue":5.4,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":48213,"numValue":6.4,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48214,"numValue":5.8,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48215,"numValue":0.9,"references":[],"str... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6589 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,589 | train | mutant | 6,203 | 117 | 6,797 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107E | L107E | 1 | 1 | 0 | 0 | 107 | L | E | 7 | CONSERVATION | 1STN | 140 | null | 107 | A | E | true | false | 0 | 11.64 | 13,167 | ProTherm | 6 | Fluorescence | GdnHCl | HEPES | 10 mM | 20 | NaCl | 100 mM | 1STN_A:L25E | null | null | 4.1 | 7.6 | null | null | null | 0.8 | 5.5 | null | null | null | null | null | null | null | Unknown | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 840 | ARTICLE | Charges in the hydrophobic interior of proteins. | 2,010 | 10.1073/pnas.1004213107 | 20798341 | Proc Natl Acad Sci U S A;107;16096-100 | 5 | Isom Daniel G|Garc?a-Moreno E Bertrand|Casta?eda Carlos A|Cannon Brian R|Velu Priya D | [{"numValue":6.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"HEPES","type":"BUFFER"},{"numValue":null,"strValue":"10 mM","type":"BUF... | [{"datasets":[],"id":48217,"numValue":4.1,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":48218,"numValue":7.6,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48219,"numValue":5.5,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48220,"numValue":0.8,"references":[],"str... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6590 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,590 | train | mutant | 6,203 | 117 | 6,797 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107E | L107E | 1 | 1 | 0 | 0 | 107 | L | E | 7 | CONSERVATION | 1STN | 140 | null | 107 | A | E | true | false | 0 | 11.64 | 13,168 | ProTherm | 8 | Fluorescence | GdnHCl | HEPES | 10 mM | 20 | NaCl | 100 mM | 1STN_A:L25E | null | null | 2.1 | 9.8 | null | null | null | 0.5 | 4.3 | null | null | null | null | null | null | null | Unknown | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 840 | ARTICLE | Charges in the hydrophobic interior of proteins. | 2,010 | 10.1073/pnas.1004213107 | 20798341 | Proc Natl Acad Sci U S A;107;16096-100 | 5 | Isom Daniel G|Garc?a-Moreno E Bertrand|Casta?eda Carlos A|Cannon Brian R|Velu Priya D | [{"numValue":8.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"HEPES","type":"BUFFER"},{"numValue":null,"strValue":"10 mM","type":"BUF... | [{"datasets":[],"id":48222,"numValue":2.1,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":48223,"numValue":9.8,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48224,"numValue":4.3,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48225,"numValue":0.5,"references":[],"str... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6591 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,591 | train | mutant | 6,203 | 117 | 6,797 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107E | L107E | 1 | 1 | 0 | 0 | 107 | L | E | 7 | CONSERVATION | 1STN | 140 | null | 107 | A | E | true | false | 0 | 11.64 | 13,169 | ProTherm | 9 | Fluorescence | GdnHCl | HEPES | 10 mM | 20 | NaCl | 100 mM | 1STN_A:L25E | null | null | 2.1 | 9.5 | null | null | null | 0.5 | 4.4 | null | null | null | null | null | null | null | Unknown | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 840 | ARTICLE | Charges in the hydrophobic interior of proteins. | 2,010 | 10.1073/pnas.1004213107 | 20798341 | Proc Natl Acad Sci U S A;107;16096-100 | 5 | Isom Daniel G|Garc?a-Moreno E Bertrand|Casta?eda Carlos A|Cannon Brian R|Velu Priya D | [{"numValue":9.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"HEPES","type":"BUFFER"},{"numValue":null,"strValue":"10 mM","type":"BUF... | [{"datasets":[],"id":48227,"numValue":2.1,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":48228,"numValue":9.5,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48229,"numValue":4.4,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48230,"numValue":0.5,"references":[],"str... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6592 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,592 | train | mutant | 6,285 | 117 | 6,885 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107G | L107G | 1 | 1 | 0 | 0 | 107 | L | G | 7 | CONSERVATION | 1STN | 140 | null | 107 | A | E | true | false | 0 | 11.64 | 13,408 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25G | null | null | 0.98 | 4.5 | null | null | null | 0.1 | 1.18 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 850 | ARTICLE | Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease. | 1,990 | 10.1021/bi00487a007 | 2261461 | Biochemistry;29;8033-41 | 3 | Shortle D|Stites W E|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":49388,"numValue":0.98,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":49389,"numValue":4.5,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":49390,"numValue":1.18,"references":[],"strValue":n... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6593 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,593 | train | mutant | 7,197 | 117 | 7,852 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107A|M108A | L107A|M108A | 2 | 2 | 0 | 0 | 107 | L | A | 7 | CONSERVATION | 1STN | 140 | null | 107|108 | A | E | true | false | 35.465714 | 17.290625 | 15,502 | ProTherm | 7 | CD | GdnHCl | NaH2PO4 | 10 mM | 20 | NaCl | 100 mM | 1STN_A:L25A 1STN_A:M26A | null | null | null | 4.4 | null | null | null | null | 1.2 | null | null | null | null | null | null | null | Unknown | DDG|M|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 935 | ARTICLE | Structural and energetic differences between insertions and substitutions in staphylococcal nuclease. | 1,992 | 10.1002/prot.340130206 | 1620695 | Proteins;13;132-40 | 2 | Shortle D|Sondek J | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"CD","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"NaH2PO4","type":"BUFFER"},{"numValue":null,"strValue":"10 mM","type":"BUFFER_CONC... | [{"datasets":[],"id":56918,"numValue":4.4,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":56919,"numValue":1.2,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":56920,"numValue":null,"references":[],"strValue":"Unknown","type":"REVERSIBILITY"}] | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7878,"numValue":3.0,"position":108,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6594 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,594 | train | mutant | 8,037 | 117 | 8,764 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107I|V148I|I154L | L107I|V148I|I154L | 3 | 3 | 0 | 0 | 107 | L | I | 7 | CONSERVATION | 1STN | 140 | null | 107|148|154 | A | E|H | true | false | 5.367353 | 11.76369 | 17,189 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25I 1STN_A:V66I 1STN_A:I72L | null | null | 2.4 | 3 | null | null | null | 0.38 | 6.33 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 984 | ARTICLE | Higher-order packing interactions in triple and quadruple mutants of staphylococcal nuclease. | 2,001 | 10.1021/bi011269d | 11705393 | Biochemistry;40;14012-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63349,"numValue":2.4,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63350,"numValue":3.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63351,"numValue":6.33,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63352,"numValue":0.38,"references":[],"s... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6595 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,595 | train | mutant | 8,038 | 117 | 8,765 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107I|V148I|I154V | L107I|V148I|I154V | 3 | 3 | 0 | 0 | 107 | L | I | 7 | CONSERVATION | 1STN | 140 | null | 107|148|154 | A | E|H | true | false | 5.367353 | 11.76369 | 17,190 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25I 1STN_A:V66I 1STN_A:I72V | null | null | 2.2 | 3.2 | null | null | null | 0.32 | 6.99 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 984 | ARTICLE | Higher-order packing interactions in triple and quadruple mutants of staphylococcal nuclease. | 2,001 | 10.1021/bi011269d | 11705393 | Biochemistry;40;14012-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63354,"numValue":2.2,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63355,"numValue":3.2,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63356,"numValue":6.99,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63357,"numValue":0.32,"references":[],"s... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6596 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,596 | train | mutant | 8,039 | 117 | 8,766 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107I|V148L|I154L | L107I|V148L|I154L | 3 | 3 | 0 | 0 | 107 | L | I | 7 | CONSERVATION | 1STN | 140 | null | 107|148|154 | A | E|H | true | false | 5.367353 | 11.76369 | 17,191 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25I 1STN_A:V66L 1STN_A:I72L | null | null | 3.1 | 2.3 | null | null | null | 0.49 | 6.2 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 984 | ARTICLE | Higher-order packing interactions in triple and quadruple mutants of staphylococcal nuclease. | 2,001 | 10.1021/bi011269d | 11705393 | Biochemistry;40;14012-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63359,"numValue":3.1,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63360,"numValue":2.3,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63361,"numValue":6.2,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63362,"numValue":0.49,"references":[],"st... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6597 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,597 | train | mutant | 8,040 | 117 | 8,767 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107I|V148L|I154V | L107I|V148L|I154V | 3 | 3 | 0 | 0 | 107 | L | I | 7 | CONSERVATION | 1STN | 140 | null | 107|148|154 | A | E|H | true | false | 5.367353 | 11.76369 | 17,192 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25I 1STN_A:V66L 1STN_A:I72V | null | null | 3.2 | 2.2 | null | null | null | 0.51 | 6.4 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 984 | ARTICLE | Higher-order packing interactions in triple and quadruple mutants of staphylococcal nuclease. | 2,001 | 10.1021/bi011269d | 11705393 | Biochemistry;40;14012-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63364,"numValue":3.2,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63365,"numValue":2.2,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63366,"numValue":6.4,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63367,"numValue":0.51,"references":[],"st... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6598 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,598 | train | mutant | 8,041 | 117 | 8,768 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107V|V148I|I154L | L107V|V148I|I154L | 3 | 3 | 0 | 0 | 107 | L | V | 7 | CONSERVATION | 1STN | 140 | null | 107|148|154 | A | E|H | true | false | 5.367353 | 11.76369 | 17,193 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25V 1STN_A:V66I 1STN_A:I72L | null | null | 2.4 | 3 | null | null | null | 0.4 | 6.07 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 984 | ARTICLE | Higher-order packing interactions in triple and quadruple mutants of staphylococcal nuclease. | 2,001 | 10.1021/bi011269d | 11705393 | Biochemistry;40;14012-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63369,"numValue":2.4,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63370,"numValue":3.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63371,"numValue":6.07,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63372,"numValue":0.4,"references":[],"st... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6599 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,599 | train | mutant | 8,042 | 117 | 8,769 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107V|V148I|I154V | L107V|V148I|I154V | 3 | 3 | 0 | 0 | 107 | L | V | 7 | CONSERVATION | 1STN | 140 | null | 107|148|154 | A | E|H | true | false | 5.367353 | 11.76369 | 17,194 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25V 1STN_A:V66I 1STN_A:I72V | null | null | 2.3 | 3.1 | null | null | null | 0.32 | 7.12 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 984 | ARTICLE | Higher-order packing interactions in triple and quadruple mutants of staphylococcal nuclease. | 2,001 | 10.1021/bi011269d | 11705393 | Biochemistry;40;14012-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63374,"numValue":2.3,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63375,"numValue":3.1,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63376,"numValue":7.12,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63377,"numValue":0.32,"references":[],"s... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6600 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,600 | train | mutant | 8,043 | 117 | 8,770 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107V|V148L|I154L | L107V|V148L|I154L | 3 | 3 | 0 | 0 | 107 | L | V | 7 | CONSERVATION | 1STN | 140 | null | 107|148|154 | A | E|H | true | false | 5.367353 | 11.76369 | 17,195 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25V 1STN_A:V66L 1STN_A:I72L | null | null | 3.2 | 2.2 | null | null | null | 0.51 | 6.33 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 984 | ARTICLE | Higher-order packing interactions in triple and quadruple mutants of staphylococcal nuclease. | 2,001 | 10.1021/bi011269d | 11705393 | Biochemistry;40;14012-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63379,"numValue":3.2,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63380,"numValue":2.2,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63381,"numValue":6.33,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63382,"numValue":0.51,"references":[],"s... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6601 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,601 | train | mutant | 8,044 | 117 | 8,771 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107V|V148L|I154V | L107V|V148L|I154V | 3 | 3 | 0 | 0 | 107 | L | V | 7 | CONSERVATION | 1STN | 140 | null | 107|148|154 | A | E|H | true | false | 5.367353 | 11.76369 | 17,196 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25V 1STN_A:V66L 1STN_A:I72V | null | null | 3.4 | 2 | null | null | null | 0.51 | 6.66 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 984 | ARTICLE | Higher-order packing interactions in triple and quadruple mutants of staphylococcal nuclease. | 2,001 | 10.1021/bi011269d | 11705393 | Biochemistry;40;14012-9 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63384,"numValue":3.4,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63385,"numValue":2.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63386,"numValue":6.66,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63387,"numValue":0.51,"references":[],"s... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRang... | |||||||||||
fireprotdb:6602 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,602 | train | mutant | 8,116 | 117 | 8,843 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107I|V148I | L107I|V148I | 2 | 2 | 0 | 0 | 107 | L | I | 7 | CONSERVATION | 1STN | 140 | null | 107|148 | A | E|H | true | false | 1.34795 | 12.364286 | 17,268 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25I 1STN_A:V66I | null | null | 2.4 | 3 | null | null | null | 0.38 | 0.92 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63744,"numValue":2.4,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63745,"numValue":3.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63746,"numValue":0.92,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63747,"numValue":0.38,"references":[],"s... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6603 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,603 | train | mutant | 8,117 | 117 | 8,844 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107I|V148L | L107I|V148L | 2 | 2 | 0 | 0 | 107 | L | I | 7 | CONSERVATION | 1STN | 140 | null | 107|148 | A | E|H | true | false | 1.34795 | 12.364286 | 17,269 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25I 1STN_A:V66L | null | null | 3.5 | 1.9 | null | null | null | 0.6 | 0.88 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63749,"numValue":3.5,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63750,"numValue":1.9,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63751,"numValue":0.88,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63752,"numValue":0.6,"references":[],"st... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6604 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,604 | train | mutant | 8,118 | 117 | 8,845 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107V|V148I | L107V|V148I | 2 | 2 | 0 | 0 | 107 | L | V | 7 | CONSERVATION | 1STN | 140 | null | 107|148 | A | E|H | true | false | 1.34795 | 12.364286 | 17,270 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25V 1STN_A:V66I | null | null | 2.5 | 2.9 | null | null | null | 0.4 | 0.94 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63754,"numValue":2.5,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63755,"numValue":2.9,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63756,"numValue":0.94,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63757,"numValue":0.4,"references":[],"st... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6605 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,605 | train | mutant | 8,119 | 117 | 8,846 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107V|V148L | L107V|V148L | 2 | 2 | 0 | 0 | 107 | L | V | 7 | CONSERVATION | 1STN | 140 | null | 107|148 | A | E|H | true | false | 1.34795 | 12.364286 | 17,271 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25V 1STN_A:V66L | null | null | 3.6 | 1.8 | null | null | null | 0.6 | 0.89 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63759,"numValue":3.6,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63760,"numValue":1.8,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63761,"numValue":0.89,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63762,"numValue":0.6,"references":[],"st... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7918,"numValue":8.0,"position":148,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6607 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,607 | train | mutant | 8,125 | 117 | 8,852 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107I|I154V | L107I|I154V | 2 | 2 | 0 | 0 | 107 | L | I | 7 | CONSERVATION | 1STN | 140 | null | 107|154 | A | E | true | false | 6.703079 | 11.10125 | 17,277 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25I 1STN_A:I72V | null | null | 2.4 | 3 | null | null | null | 0.32 | 1.09 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63789,"numValue":2.4,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63790,"numValue":3.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63791,"numValue":1.09,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63792,"numValue":0.32,"references":[],"s... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6608 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,608 | train | mutant | 8,126 | 117 | 8,853 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107V|I154L | L107V|I154L | 2 | 2 | 0 | 0 | 107 | L | V | 7 | CONSERVATION | 1STN | 140 | null | 107|154 | A | E | true | false | 6.703079 | 11.10125 | 17,278 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25V 1STN_A:I72L | null | null | 3.8 | 1.6 | null | null | null | 0.56 | 1.03 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63794,"numValue":3.8,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63795,"numValue":1.6,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63796,"numValue":1.03,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63797,"numValue":0.56,"references":[],"s... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6609 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,609 | train | mutant | 8,127 | 117 | 8,854 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | L107V|I154V | L107V|I154V | 2 | 2 | 0 | 0 | 107 | L | V | 7 | CONSERVATION | 1STN | 140 | null | 107|154 | A | E | true | false | 6.703079 | 11.10125 | 17,279 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:L25V 1STN_A:I72V | null | null | 2.5 | 2.9 | null | null | null | 0.35 | 1.09 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 986 | ARTICLE | Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles. | 2,001 | 10.1021/bi011268l | 11705392 | Biochemistry;40;14004-11 | 2 | Chen J|Stites W E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":63799,"numValue":2.5,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":63800,"numValue":2.9,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":63801,"numValue":1.09,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":63802,"numValue":0.35,"references":[],"s... | [{"id":7877,"numValue":7.0,"position":107,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"},{"id":7924,"numValue":8.0,"position":154,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6610 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,610 | train | mutant | 4,694 | 117 | 5,232 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | M108G | M108G | 1 | 1 | 0 | 0 | 108 | M | G | 3 | CONSERVATION | 1STN | 140 | null | 108 | A | E | true | false | 70.931428 | 22.94125 | 11,076 | ProTherm | 5.6 | Fluorescence | GdnHCl | Sodium acetate | 50 mM | 25 | NaCl | 100 mM | 1STN_A:M26G | null | null | 2.5 | null | null | null | null | null | 7.9 | null | null | null | null | null | null | null | Unknown | DG|M|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 741 | ARTICLE | A model of the changes in denatured state structure underlying m value effects in staphylococcal nuclease. | 1,999 | 10.1038/12338 | 10467101 | Nat Struct Biol;6;876-83 | 2 | Wrabl J|Shortle D | [{"numValue":5.6,"strValue":null,"type":"PH"},{"numValue":25.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium acetate","type":"BUFFER"},{"numValue":null,"strValue":"50 mM","t... | [{"datasets":[],"id":38131,"numValue":2.5,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":38132,"numValue":7.9,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":38133,"numValue":null,"references":[],"strValue":"Unknown","type":"REVERSIBILITY"}] | [{"id":7878,"numValue":3.0,"position":108,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6611 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,611 | train | mutant | 4,694 | 117 | 5,232 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | M108G | M108G | 1 | 1 | 0 | 0 | 108 | M | G | 3 | CONSERVATION | 1STN | 140 | null | 108 | A | E | true | false | 70.931428 | 22.94125 | 11,077 | ProTherm | 5.2 | Fluorescence | GdnHCl | Sodium acetate | 50 mM | 25 | NaCl | 100 mM | 1STN_A:M26G | null | null | 3.1 | null | null | null | null | null | 7.4 | null | null | null | null | null | null | null | Unknown | DG|M|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 741 | ARTICLE | A model of the changes in denatured state structure underlying m value effects in staphylococcal nuclease. | 1,999 | 10.1038/12338 | 10467101 | Nat Struct Biol;6;876-83 | 2 | Wrabl J|Shortle D | [{"numValue":5.2,"strValue":null,"type":"PH"},{"numValue":25.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium acetate","type":"BUFFER"},{"numValue":null,"strValue":"50 mM","t... | [{"datasets":[],"id":38134,"numValue":3.1,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":38135,"numValue":7.4,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":38136,"numValue":null,"references":[],"strValue":"Unknown","type":"REVERSIBILITY"}] | [{"id":7878,"numValue":3.0,"position":108,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6613 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,613 | train | mutant | 4,694 | 117 | 5,232 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | M108G | M108G | 1 | 1 | 0 | 0 | 108 | M | G | 3 | CONSERVATION | 1STN | 140 | null | 108 | A | E | true | false | 70.931428 | 22.94125 | 13,543 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:M26G | null | null | 3.3 | null | null | null | null | null | 7.6 | null | null | null | null | null | null | null | Unknown | DG|M|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 741 | ARTICLE | A model of the changes in denatured state structure underlying m value effects in staphylococcal nuclease. | 1,999 | 10.1038/12338 | 10467101 | Nat Struct Biol;6;876-83 | 2 | Wrabl J|Shortle D | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":50051,"numValue":3.3,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":50052,"numValue":7.6,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":50053,"numValue":null,"references":[],"strValue":"Unknown","type":"REVERSIBILITY"}] | [{"id":7878,"numValue":3.0,"position":108,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6614 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,614 | train | mutant | 5,879 | 117 | 6,449 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | M108I | M108I | 1 | 1 | 0 | 0 | 108 | M | I | 3 | CONSERVATION | 1STN | 140 | null | 108 | A | E | true | false | 70.931428 | 22.94125 | 12,721 | ProTherm | 7 | Fluorescence | GdnHCl | sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:M26I | null | null | 4.5 | 0.9 | null | null | null | 0.7 | 0.99 | null | null | null | null | null | null | null | Unknown | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 820 | ARTICLE | Comparing the effect on protein stability of methionine oxidation versus mutagenesis: steps toward engineering oxidative resistance in proteins. | 2,001 | 10.1093/protein/14.5.343 | 11438757 | Protein Eng;14;343-7 | 4 | Stites W E|Spencer D S|Kim Y H|Berry A H | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":46132,"numValue":4.5,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":46133,"numValue":0.9,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":46134,"numValue":0.99,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":46135,"numValue":0.7,"... | [{"id":7878,"numValue":3.0,"position":108,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6615 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,615 | train | mutant | 5,882 | 117 | 6,452 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | M108L | M108L | 1 | 1 | 0 | 0 | 108 | M | L | 3 | CONSERVATION | 1STN | 140 | null | 108 | A | E | true | false | 70.931428 | 22.94125 | 12,724 | ProTherm | 7 | Fluorescence | GdnHCl | sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:M26L | null | null | 4.9 | 0.5 | null | null | null | 0.8 | 0.93 | null | null | null | null | null | null | null | Unknown | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv|SAAFEC_S983.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 820 | ARTICLE | Comparing the effect on protein stability of methionine oxidation versus mutagenesis: steps toward engineering oxidative resistance in proteins. | 2,001 | 10.1093/protein/14.5.343 | 11438757 | Protein Eng;14;343-7 | 4 | Stites W E|Spencer D S|Kim Y H|Berry A H | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":46147,"numValue":4.9,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv","SAAFEC_S983.csv"],"id":46148,"numValue":0.5,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":46149,"numValue":0.93,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":4615... | [{"id":7878,"numValue":3.0,"position":108,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6616 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,616 | train | mutant | 6,315 | 117 | 6,915 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | M108A | M108A | 1 | 1 | 0 | 0 | 108 | M | A | 3 | CONSERVATION | 1STN | 140 | null | 108 | A | E | true | false | 70.931428 | 22.94125 | 13,449 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:M26A | null | null | 3.98 | 1.5 | null | null | null | 0.5 | 1.07 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 850 | ARTICLE | Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease. | 1,990 | 10.1021/bi00487a007 | 2261461 | Biochemistry;29;8033-41 | 3 | Shortle D|Stites W E|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":49592,"numValue":3.98,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":49593,"numValue":1.5,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":49594,"numValue":1.07,"references":[],"strValue":n... | [{"id":7878,"numValue":3.0,"position":108,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6618 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,618 | train | mutant | 1,230 | 117 | 1,380 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109F | Y109F | 1 | 1 | 0 | 0 | 109 | Y | F | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 2,488 | ProTherm | 7 | Fluorescence | Thermal | Phosphate | 25 mM | null | NaCl | 100 mM | 1STN_A:Y27F | 51 | -2 | null | null | null | null | 82 | null | null | null | null | null | null | null | null | null | Unknown | TM|DTM|DHVH|REVERSIBILITY | PoPMuSiC-2.0_S2648.csv|STRUM_Q3421.csv | PH|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 225 | ARTICLE | Thermal denaturations of staphylococcal nuclease wild-type and mutants monitored by fluorescence and circular dichroism are similar: lack of evidence for other than a two state thermal denaturation. | 2,007 | 10.1016/j.bpc.2006.10.014 | 17134819 | Biophys Chem;125;490-6 | 2 | Byrne Michael P|Stites Wesley E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"Thermal","type":"METHOD"},{"numValue":null,"strValue":"Phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM","type":"BUFFER_CONC"},{"numValue":null,"strValue":"NaCl","type":"... | [{"datasets":["PoPMuSiC-2.0_S2648.csv","STRUM_Q3421.csv"],"id":9162,"numValue":51.0,"references":[],"strValue":null,"type":"TM"},{"datasets":["PoPMuSiC-2.0_S2648.csv","STRUM_Q3421.csv"],"id":9163,"numValue":-2.0,"references":[],"strValue":null,"type":"DTM"},{"datasets":[],"id":9164,"numValue":82.0,"references":[],"strV... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6619 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,619 | train | mutant | 1,230 | 117 | 1,380 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109F | Y109F | 1 | 1 | 0 | 0 | 109 | Y | F | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,280 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27F | null | null | 5 | 0 | null | null | null | 0.77 | 1.1 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48780,"numValue":5.0,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":48781,"numValue":0.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48782,"numValue":1.1,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48783,"numValue":0.77,"references":[],"st... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6620 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,620 | train | mutant | 1,230 | 117 | 1,380 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109F | Y109F | 1 | 1 | 0 | 0 | 109 | Y | F | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,496 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27F | null | null | 5 | 0.6 | null | null | null | 0.74 | 1.01 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 853 | ARTICLE | Energetic contribution of side chain hydrogen bonding to the stability of staphylococcal nuclease. | 1,995 | 10.1021/bi00042a029 | 7577991 | Biochemistry;34;13949-60 | 4 | Stites W E|Byrne M P|Manuel R L|Lowe L G | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":49826,"numValue":5.0,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv"],"id":49827,"numValue":0.6,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":49828,"numValue":1.01,"references":[],"strValue":null,"type":"M"},{"da... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6621 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,621 | train | mutant | 6,225 | 117 | 6,819 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109A | Y109A | 1 | 1 | 0 | 0 | 109 | Y | A | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,277 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27A | null | null | 2.2 | 2.8 | null | null | null | 0.29 | 1.07 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48767,"numValue":2.2,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv"],"id":48768,"numValue":2.8,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48769,"numValue":1.07,"references":[],"strValue":null,"type":"M"},{"da... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6622 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,622 | train | mutant | 6,225 | 117 | 6,819 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109A | Y109A | 1 | 1 | 0 | 0 | 109 | Y | A | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,457 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27A | null | null | 1.28 | 4.2 | null | null | null | 0.1 | 1.1 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 850 | ARTICLE | Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease. | 1,990 | 10.1021/bi00487a007 | 2261461 | Biochemistry;29;8033-41 | 3 | Shortle D|Stites W E|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":49632,"numValue":1.28,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":49633,"numValue":4.2,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":49634,"numValue":1.1,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":49635,"numValue":0.1,"references":[],"st... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6623 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,623 | train | mutant | 6,226 | 117 | 6,820 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109C | Y109C | 1 | 1 | 0 | 0 | 109 | Y | C | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,278 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27C | null | null | 2.1 | 2.9 | null | null | null | 0.41 | 1.02 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48772,"numValue":2.1,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":48773,"numValue":2.9,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48774,"numValue":1.02,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48775,"numValue":0.41,... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6624 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,624 | train | mutant | 6,227 | 117 | 6,821 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109E | Y109E | 1 | 1 | 0 | 0 | 109 | Y | E | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,279 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27E | null | null | 0 | 5 | null | null | null | null | null | null | null | null | null | null | null | null | yes | DG|DDG|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48777,"numValue":0.0,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":48778,"numValue":5.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48779,"numValue":null,"references":[],"strValue":"yes","type":"REVERSIBILITY"}] | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6625 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,625 | train | mutant | 6,228 | 117 | 6,822 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109H | Y109H | 1 | 1 | 0 | 0 | 109 | Y | H | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,281 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27H | null | null | 3.4 | 1.6 | null | null | null | 0.48 | 1.19 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48785,"numValue":3.4,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":48786,"numValue":1.6,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48787,"numValue":1.19,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48788,"numValue":0.48,... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6626 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,626 | train | mutant | 6,229 | 117 | 6,823 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109I | Y109I | 1 | 1 | 0 | 0 | 109 | Y | I | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,282 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27I | null | null | 2.5 | 2.5 | null | null | null | 0.49 | 0.81 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48790,"numValue":2.5,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":48791,"numValue":2.5,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48792,"numValue":0.81,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48793,"numValue":0.49,... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6627 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,627 | train | mutant | 6,230 | 117 | 6,824 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109K | Y109K | 1 | 1 | 0 | 0 | 109 | Y | K | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,283 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27K | null | null | 1.1 | 3.9 | null | null | null | 0.22 | 1.07 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48795,"numValue":1.1,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":48796,"numValue":3.9,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48797,"numValue":1.07,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48798,"numValue":0.22,... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6628 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,628 | train | mutant | 6,231 | 117 | 6,825 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109L | Y109L | 1 | 1 | 0 | 0 | 109 | Y | L | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,284 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27L | null | null | 3.5 | 1.5 | null | null | null | 0.57 | 1.07 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48800,"numValue":3.5,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":48801,"numValue":1.5,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48802,"numValue":1.07,"references":[],"strValue":nu... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6630 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,630 | train | mutant | 6,232 | 117 | 6,826 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109M | Y109M | 1 | 1 | 0 | 0 | 109 | Y | M | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,285 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27M | null | null | 3 | 2 | null | null | null | 0.52 | 0.98 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48805,"numValue":3.0,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":48806,"numValue":2.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48807,"numValue":0.98,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48808,"numValue":0.52,... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6631 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,631 | train | mutant | 6,233 | 117 | 6,827 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109N | Y109N | 1 | 1 | 0 | 0 | 109 | Y | N | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,286 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27N | null | null | 1 | 4 | null | null | null | 0.22 | 1.15 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48810,"numValue":1.0,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":48811,"numValue":4.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48812,"numValue":1.15,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48813,"numValue":0.22,... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6632 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,632 | train | mutant | 6,234 | 117 | 6,828 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109Q | Y109Q | 1 | 1 | 0 | 0 | 109 | Y | Q | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,287 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27Q | null | null | 1.8 | 3.2 | null | null | null | 0.26 | 1.27 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48815,"numValue":1.8,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":48816,"numValue":3.2,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48817,"numValue":1.27,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48818,"numValue":0.26,... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6633 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,633 | train | mutant | 6,235 | 117 | 6,829 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109R | Y109R | 1 | 1 | 0 | 0 | 109 | Y | R | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,288 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27R | null | null | 2.1 | 2.9 | null | null | null | 0.3 | 1.29 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48820,"numValue":2.1,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":48821,"numValue":2.9,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48822,"numValue":1.29,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48823,"numValue":0.3,"... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6634 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,634 | train | mutant | 6,236 | 117 | 6,830 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109S | Y109S | 1 | 1 | 0 | 0 | 109 | Y | S | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,289 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27S | null | null | 2 | 3 | null | null | null | 0.26 | 1.32 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48825,"numValue":2.0,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":48826,"numValue":3.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48827,"numValue":1.32,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48828,"numValue":0.26,... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6635 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,635 | train | mutant | 6,237 | 117 | 6,831 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109T | Y109T | 1 | 1 | 0 | 0 | 109 | Y | T | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,290 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27T | null | null | 1.7 | 3.3 | null | null | null | 0.32 | 1.07 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48830,"numValue":1.7,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":48831,"numValue":3.3,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48832,"numValue":1.07,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48833,"numValue":0.32,... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6636 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,636 | train | mutant | 6,238 | 117 | 6,832 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109V | Y109V | 1 | 1 | 0 | 0 | 109 | Y | V | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,291 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27V | null | null | 2 | 3 | null | null | null | 0.45 | 0.76 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48835,"numValue":2.0,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":48836,"numValue":3.0,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48837,"numValue":0.76,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":48838,"numValue":0.45,... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6637 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,637 | train | mutant | 6,239 | 117 | 6,833 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Y109W | Y109W | 1 | 1 | 0 | 0 | 109 | Y | W | 3 | CONSERVATION | 1STN | 140 | null | 109 | A | E | true | false | 24.339552 | 18.9775 | 13,292 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Y27W | null | null | 4.4 | 0.6 | null | null | null | 0.7 | 1.08 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv|SAAFEC_S983.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 841 | ARTICLE | Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel. | 1,997 | 10.1021/bi970876r | 9315853 | Biochemistry;36;12167-74 | 5 | Fox R O|Bhat M G|Ganley L M|Ledman D W|Goodman M A | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":48840,"numValue":4.4,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv","SAAFEC_S983.csv"],"id":48841,"numValue":0.6,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":48842,"numValue":1.08,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":4884... | [{"id":7879,"numValue":3.0,"position":109,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6638 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,638 | train | mutant | 1,276 | 117 | 1,426 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | K110F | K110F | 1 | 1 | 0 | 0 | 110 | K | F | 5 | CONSERVATION | 1STN | 140 | null | 110 | A | T | false | false | 156.829734 | 35.44 | 2,440 | ProTherm | 7 | CD | Thermal | Phosphate | 25 mM | null | NaCl | 100 mM | 1STN_A:K28F | 48.5 | -4.2 | null | null | null | null | 91 | null | null | null | null | null | null | null | null | null | Unknown | TM|DTM|DHVH|REVERSIBILITY | AUTOMUTE_S1962.csv|Broom_S605.csv|Saraboji_S2204.csv|STRUM_Q3421.csv|EASE-MM_S543.csv|PoPMuSiC-2.0_S2648.csv | PH|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 225 | ARTICLE | Thermal denaturations of staphylococcal nuclease wild-type and mutants monitored by fluorescence and circular dichroism are similar: lack of evidence for other than a two state thermal denaturation. | 2,007 | 10.1016/j.bpc.2006.10.014 | 17134819 | Biophys Chem;125;490-6 | 2 | Byrne Michael P|Stites Wesley E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":null,"strValue":"CD","type":"MEASURE"},{"numValue":null,"strValue":"Thermal","type":"METHOD"},{"numValue":null,"strValue":"Phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM","type":"BUFFER_CONC"},{"numValue":null,"strValue":"NaCl","type":"ION"},{"nu... | [{"datasets":["AUTOMUTE_S1962.csv","Broom_S605.csv","Saraboji_S2204.csv","STRUM_Q3421.csv"],"id":8970,"numValue":48.5,"references":[],"strValue":null,"type":"TM"},{"datasets":["AUTOMUTE_S1962.csv","EASE-MM_S543.csv","PoPMuSiC-2.0_S2648.csv","STRUM_Q3421.csv"],"id":8971,"numValue":-4.2,"references":[],"strValue":null,"t... | [{"id":7880,"numValue":5.0,"position":110,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6640 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,640 | train | mutant | 1,276 | 117 | 1,426 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | K110F | K110F | 1 | 1 | 0 | 0 | 110 | K | F | 5 | CONSERVATION | 1STN | 140 | null | 110 | A | T | false | false | 156.829734 | 35.44 | 13,335 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:K28F | null | null | 4.6 | 0.9 | null | null | null | 0.71 | 0.99 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 845 | ARTICLE | Stability effects of increasing the hydrophobicity of solvent-exposed side chains in staphylococcal nuclease. | 1,998 | 10.1021/bi9725069 | 9578580 | Biochemistry;37;6939-48 | 4 | Stites W E|Schwehm J M|Kristyanne E S|Biggers C C | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":49030,"numValue":4.6,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":49031,"numValue":0.9,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":49032,"numValue":0.99,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":49033,"numValue":0.71,... | [{"id":7880,"numValue":5.0,"position":110,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6641 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,641 | train | mutant | 5,988 | 117 | 6,558 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | K110A | K110A | 1 | 1 | 0 | 0 | 110 | K | A | 5 | CONSERVATION | 1STN | 140 | null | 110 | A | T | false | false | 156.829734 | 35.44 | 12,862 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:K28A | null | null | 4.9 | 0.7 | null | null | null | 0.7 | 1.02 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 827 | ARTICLE | Contributions of the ionizable amino acids to the stability of staphylococcal nuclease. | 1,996 | 10.1021/bi960171+ | 8639591 | Biochemistry;35;6443-9 | 3 | Shortle D|Garcia-Moreno B|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":46826,"numValue":4.9,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":46827,"numValue":0.7,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":46828,"numValue":1.02,"references":[],"strValue":nu... | [{"id":7880,"numValue":5.0,"position":110,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6642 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,642 | train | mutant | 5,988 | 117 | 6,558 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | K110A | K110A | 1 | 1 | 0 | 0 | 110 | K | A | 5 | CONSERVATION | 1STN | 140 | null | 110 | A | T | false | false | 156.829734 | 35.44 | 13,554 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:K28A | null | null | 4.7 | 0.7 | null | null | null | 0.7 | 1.02 | null | null | null | null | null | null | null | Unknown | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 856 | ARTICLE | Evidence for strained interactions between side-chains and the polypeptide backbone. | 1,994 | 10.1016/s0022-2836(05)80008-7 | 8289248 | J Mol Biol;235;27-32 | 3 | Shortle D|Stites W E|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":50100,"numValue":4.7,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":50101,"numValue":0.7,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":50102,"numValue":1.02,"references":[],"strValue":nu... | [{"id":7880,"numValue":5.0,"position":110,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6643 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,643 | train | mutant | 5,989 | 117 | 6,559 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | K110G | K110G | 1 | 1 | 0 | 0 | 110 | K | G | 5 | CONSERVATION | 1STN | 140 | null | 110 | A | T | false | false | 156.829734 | 35.44 | 12,863 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:K28G | null | null | 4.9 | 0.7 | null | null | null | 0.67 | 1.04 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 827 | ARTICLE | Contributions of the ionizable amino acids to the stability of staphylococcal nuclease. | 1,996 | 10.1021/bi960171+ | 8639591 | Biochemistry;35;6443-9 | 3 | Shortle D|Garcia-Moreno B|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":46831,"numValue":4.9,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":46832,"numValue":0.7,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":46833,"numValue":1.04,"references":[],"strValue":nu... | [{"id":7880,"numValue":5.0,"position":110,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6644 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,644 | train | mutant | 5,989 | 117 | 6,559 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | K110G | K110G | 1 | 1 | 0 | 0 | 110 | K | G | 5 | CONSERVATION | 1STN | 140 | null | 110 | A | T | false | false | 156.829734 | 35.44 | 13,555 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:K28G | null | null | 4.7 | 0.7 | null | null | null | 0.67 | 1.04 | null | null | null | null | null | null | null | Unknown | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 856 | ARTICLE | Evidence for strained interactions between side-chains and the polypeptide backbone. | 1,994 | 10.1016/s0022-2836(05)80008-7 | 8289248 | J Mol Biol;235;27-32 | 3 | Shortle D|Stites W E|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":50105,"numValue":4.7,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":50106,"numValue":0.7,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":50107,"numValue":1.04,"references":[],"strValue":nu... | [{"id":7880,"numValue":5.0,"position":110,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6645 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,645 | train | mutant | 6,045 | 117 | 6,630 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | K110E | K110E | 1 | 1 | 0 | 0 | 110 | K | E | 5 | CONSERVATION | 1STN | 140 | null | 110 | A | T | false | false | 156.829734 | 35.44 | 12,922 | ProTherm | 7 | Fluorescence | GdnHCl | sodium phosphate | 25 mM | 20 | sodium chloride | 100 mM | 1STN_A:K28E | null | null | 4.6 | 0.8 | null | null | null | 0.7 | 6.53 | null | null | null | null | null | null | null | Unknown | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 828 | ARTICLE | Changes in stability upon charge reversal and neutralization substitution in staphylococcal nuclease are dominated by favorable electrostatic effects. | 2,003 | 10.1021/bi0266434 | 12549934 | Biochemistry;42;1118-28 | 5 | Stites Wesley E|Schwehm Jeffery M|Fitch Carolyn A|Dang Bao N|Garc?a-Moreno E Bertrand | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":47126,"numValue":4.6,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":47127,"numValue":0.8,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":47128,"numValue":6.53,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":47129,"numValue":0.7,"... | [{"id":7880,"numValue":5.0,"position":110,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6646 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,646 | train | mutant | 6,046 | 117 | 6,631 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | K110Q | K110Q | 1 | 1 | 0 | 0 | 110 | K | Q | 5 | CONSERVATION | 1STN | 140 | null | 110 | A | T | false | false | 156.829734 | 35.44 | 12,923 | ProTherm | 7 | Fluorescence | GdnHCl | sodium phosphate | 25 mM | 20 | sodium chloride | 100 mM | 1STN_A:K28Q | null | null | 5.1 | 0.3 | null | null | null | 0.78 | 6.53 | null | null | null | null | null | null | null | Unknown | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv|SAAFEC_S983.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 828 | ARTICLE | Changes in stability upon charge reversal and neutralization substitution in staphylococcal nuclease are dominated by favorable electrostatic effects. | 2,003 | 10.1021/bi0266434 | 12549934 | Biochemistry;42;1118-28 | 5 | Stites Wesley E|Schwehm Jeffery M|Fitch Carolyn A|Dang Bao N|Garc?a-Moreno E Bertrand | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":47131,"numValue":5.1,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv","SAAFEC_S983.csv"],"id":47132,"numValue":0.3,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":47133,"numValue":6.53,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":4713... | [{"id":7880,"numValue":5.0,"position":110,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6647 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,647 | train | mutant | 1,277 | 117 | 1,427 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | G111F | G111F | 1 | 1 | 0 | 0 | 111 | G | F | 7 | CONSERVATION | 1STN | 140 | null | 111 | A | T | false | false | 72.719287 | 26.38 | 2,441 | ProTherm | 7 | CD | Thermal | Phosphate | 25 mM | null | NaCl | 100 mM | 1STN_A:G29F | 46.3 | -6.4 | null | null | null | null | 87 | null | null | null | null | null | null | null | null | null | Unknown | TM|DTM|DHVH|REVERSIBILITY | PH|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 225 | ARTICLE | Thermal denaturations of staphylococcal nuclease wild-type and mutants monitored by fluorescence and circular dichroism are similar: lack of evidence for other than a two state thermal denaturation. | 2,007 | 10.1016/j.bpc.2006.10.014 | 17134819 | Biophys Chem;125;490-6 | 2 | Byrne Michael P|Stites Wesley E | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":null,"strValue":"CD","type":"MEASURE"},{"numValue":null,"strValue":"Thermal","type":"METHOD"},{"numValue":null,"strValue":"Phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM","type":"BUFFER_CONC"},{"numValue":null,"strValue":"NaCl","type":"ION"},{"nu... | [{"datasets":[],"id":8974,"numValue":46.3,"references":[],"strValue":null,"type":"TM"},{"datasets":[],"id":8975,"numValue":-6.4,"references":[],"strValue":null,"type":"DTM"},{"datasets":[],"id":8976,"numValue":87.0,"references":[],"strValue":null,"type":"DHVH"},{"datasets":[],"id":8977,"numValue":null,"references":[],"... | [{"id":7881,"numValue":7.0,"position":111,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6649 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,649 | train | mutant | 1,277 | 117 | 1,427 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | G111F | G111F | 1 | 1 | 0 | 0 | 111 | G | F | 7 | CONSERVATION | 1STN | 140 | null | 111 | A | T | false | false | 72.719287 | 26.38 | 4,262 | ProTherm | 7 | Fluorescence | Thermal | Sodium phosphate | 25 mM | null | NaCl | 100 mM | 1STN_A:G29F | 47.3 | -5.7 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | yes | TM|DTM|REVERSIBILITY | AUTOMUTE_S1749.csv|Saraboji_S1791.csv | PH|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 407 | ARTICLE | Chemically crosslinked protein dimers: stability and denaturation effects. | 1,995 | 10.1002/pro.5560041211 | 8580845 | Protein Sci;4;2545-58 | 2 | Stites W E|Byrne M P | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"Thermal","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM","type":"BUFFER_CONC"},{"numValue":null,"strValue":"NaCl","... | [{"datasets":[],"id":15800,"numValue":47.3,"references":[],"strValue":null,"type":"TM"},{"datasets":["AUTOMUTE_S1749.csv","Saraboji_S1791.csv"],"id":15801,"numValue":-5.7,"references":[],"strValue":null,"type":"DTM"},{"datasets":[],"id":15802,"numValue":null,"references":[],"strValue":"yes","type":"REVERSIBILITY"}] | [{"id":7881,"numValue":7.0,"position":111,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6650 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,650 | train | mutant | 1,277 | 117 | 1,427 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | G111F | G111F | 1 | 1 | 0 | 0 | 111 | G | F | 7 | CONSERVATION | 1STN | 140 | null | 111 | A | T | false | false | 72.719287 | 26.38 | 13,336 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:G29F | null | null | 4.1 | 1.4 | null | null | null | 0.57 | 1.09 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 845 | ARTICLE | Stability effects of increasing the hydrophobicity of solvent-exposed side chains in staphylococcal nuclease. | 1,998 | 10.1021/bi9725069 | 9578580 | Biochemistry;37;6939-48 | 4 | Stites W E|Schwehm J M|Kristyanne E S|Biggers C C | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":49035,"numValue":4.1,"references":[],"strValue":null,"type":"DG"},{"datasets":[],"id":49036,"numValue":1.4,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":49037,"numValue":1.09,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":49038,"numValue":0.57,"references":[],"s... | [{"id":7881,"numValue":7.0,"position":111,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | |||||||||||
fireprotdb:6651 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,651 | train | mutant | 1,277 | 117 | 1,427 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | G111F | G111F | 1 | 1 | 0 | 0 | 111 | G | F | 7 | CONSERVATION | 1STN | 140 | null | 111 | A | T | false | false | 72.719287 | 26.38 | 13,611 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:G29F | null | null | 4.4 | 1.1 | null | null | null | 0.59 | 7.43 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S983.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 407 | ARTICLE | Chemically crosslinked protein dimers: stability and denaturation effects. | 1,995 | 10.1002/pro.5560041211 | 8580845 | Protein Sci;4;2545-58 | 2 | Stites W E|Byrne M P | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":50353,"numValue":4.4,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S983.csv"],"id":50354,"numValue":1.1,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":50355,"numValue":7.43,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":50356,"numValue":0.59,"... | [{"id":7881,"numValue":7.0,"position":111,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6652 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,652 | train | mutant | 2,160 | 117 | 2,454 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | G111C | G111C | 1 | 1 | 0 | 0 | 111 | G | C | 7 | CONSERVATION | 1STN | 140 | null | 111 | A | T | false | false | 72.719287 | 26.38 | 4,253 | ProTherm | 7 | Fluorescence | Thermal | Sodium phosphate | 25 mM | null | NaCl | 100 mM | 1STN_A:G29C | 48.4 | -4.6 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | yes | TM|DTM|REVERSIBILITY | AUTOMUTE_S1749.csv|Saraboji_S1791.csv | PH|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 407 | ARTICLE | Chemically crosslinked protein dimers: stability and denaturation effects. | 1,995 | 10.1002/pro.5560041211 | 8580845 | Protein Sci;4;2545-58 | 2 | Stites W E|Byrne M P | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"Thermal","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM","type":"BUFFER_CONC"},{"numValue":null,"strValue":"NaCl","... | [{"datasets":[],"id":15773,"numValue":48.4,"references":[],"strValue":null,"type":"TM"},{"datasets":["AUTOMUTE_S1749.csv","Saraboji_S1791.csv"],"id":15774,"numValue":-4.6,"references":[],"strValue":null,"type":"DTM"},{"datasets":[],"id":15775,"numValue":null,"references":[],"strValue":"yes","type":"REVERSIBILITY"}] | [{"id":7881,"numValue":7.0,"position":111,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6653 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,653 | train | mutant | 2,160 | 117 | 2,454 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | G111C | G111C | 1 | 1 | 0 | 0 | 111 | G | C | 7 | CONSERVATION | 1STN | 140 | null | 111 | A | T | false | false | 72.719287 | 26.38 | 13,602 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:G29C | null | null | 4.4 | 1.1 | null | null | null | 0.62 | 7.09 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 407 | ARTICLE | Chemically crosslinked protein dimers: stability and denaturation effects. | 1,995 | 10.1002/pro.5560041211 | 8580845 | Protein Sci;4;2545-58 | 2 | Stites W E|Byrne M P | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":50308,"numValue":4.4,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":50309,"numValue":1.1,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":50310,"numValue":7.09,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":50311,"numValue":0.62,... | [{"id":7881,"numValue":7.0,"position":111,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6654 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,654 | train | mutant | 6,126 | 117 | 6,714 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | G111A | G111A | 1 | 1 | 0 | 0 | 111 | G | A | 7 | CONSERVATION | 1STN | 140 | null | 111 | A | T | false | false | 72.719287 | 26.38 | 13,038 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:G29A | null | null | 4.2 | 1.3 | null | null | null | 0.57 | 1.09 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 833 | ARTICLE | Contributions of the polar, uncharged amino acids to the stability of staphylococcal nuclease: evidence for mutational effects on the free energy of the denatured state. | 1,992 | 10.1021/bi00140a005 | 1610820 | Biochemistry;31;5717-28 | 3 | Shortle D|Meeker A K|Green S M | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":47661,"numValue":4.2,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":47662,"numValue":1.3,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":47663,"numValue":1.09,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":47664,"numValue":0.57,... | [{"id":7881,"numValue":7.0,"position":111,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6655 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,655 | train | mutant | 6,126 | 117 | 6,714 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | G111A | G111A | 1 | 1 | 0 | 0 | 111 | G | A | 7 | CONSERVATION | 1STN | 140 | null | 111 | A | T | false | false | 72.719287 | 26.38 | 13,561 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:G29A | null | null | 4.2 | 1.2 | null | null | null | 0.57 | 1.09 | null | null | null | null | null | null | null | Unknown | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 856 | ARTICLE | Evidence for strained interactions between side-chains and the polypeptide backbone. | 1,994 | 10.1016/s0022-2836(05)80008-7 | 8289248 | J Mol Biol;235;27-32 | 3 | Shortle D|Stites W E|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":50135,"numValue":4.2,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":50136,"numValue":1.2,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":50137,"numValue":1.09,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":50138,"numValue":0.57,... | [{"id":7881,"numValue":7.0,"position":111,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6657 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,657 | train | mutant | 6,151 | 117 | 6,739 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Q112G | Q112G | 1 | 1 | 0 | 0 | 112 | Q | G | 5 | CONSERVATION | 1STN | 140 | null | 112 | A | E | false | false | 102.706926 | 45.907778 | 13,064 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Q30G | null | null | 4.6 | 0.9 | null | null | null | 0.66 | 1.01 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 833 | ARTICLE | Contributions of the polar, uncharged amino acids to the stability of staphylococcal nuclease: evidence for mutational effects on the free energy of the denatured state. | 1,992 | 10.1021/bi00140a005 | 1610820 | Biochemistry;31;5717-28 | 3 | Shortle D|Meeker A K|Green S M | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":47789,"numValue":4.6,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":47790,"numValue":0.9,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":47791,"numValue":1.01,"references":[],"strValue":nu... | [{"id":7882,"numValue":5.0,"position":112,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6658 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,658 | train | mutant | 6,152 | 117 | 6,740 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | Q112A | Q112A | 1 | 1 | 0 | 0 | 112 | Q | A | 5 | CONSERVATION | 1STN | 140 | null | 112 | A | E | false | false | 102.706926 | 45.907778 | 13,065 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:Q30A | null | null | 5.2 | 0.3 | null | null | null | 0.77 | 0.99 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv|SAAFEC_S983.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 833 | ARTICLE | Contributions of the polar, uncharged amino acids to the stability of staphylococcal nuclease: evidence for mutational effects on the free energy of the denatured state. | 1,992 | 10.1021/bi00140a005 | 1610820 | Biochemistry;31;5717-28 | 3 | Shortle D|Meeker A K|Green S M | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":47794,"numValue":5.2,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv","SAAFEC_S983.csv"],"id":47795,"numValue":0.3,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":47796,"numValue":0.99,"references... | [{"id":7882,"numValue":5.0,"position":112,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6659 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,659 | train | mutant | 6,115 | 117 | 6,703 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | P113G | P113G | 1 | 1 | 0 | 0 | 113 | P | G | 4 | CONSERVATION | 1STN | 140 | null | 113 | A | E | false | false | 76.508395 | 22.568571 | 13,026 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:P31G | null | null | 3.9 | 1.6 | null | null | null | 0.59 | 0.98 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 833 | ARTICLE | Contributions of the polar, uncharged amino acids to the stability of staphylococcal nuclease: evidence for mutational effects on the free energy of the denatured state. | 1,992 | 10.1021/bi00140a005 | 1610820 | Biochemistry;31;5717-28 | 3 | Shortle D|Meeker A K|Green S M | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":47601,"numValue":3.9,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":47602,"numValue":1.6,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":47603,"numValue":0.98,"references":[],"strValue":nu... | [{"id":7883,"numValue":4.0,"position":113,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6660 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,660 | train | mutant | 6,116 | 117 | 6,704 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | P113A | P113A | 1 | 1 | 0 | 0 | 113 | P | A | 4 | CONSERVATION | 1STN | 140 | null | 113 | A | E | false | false | 76.508395 | 22.568571 | 13,027 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:P31A | null | null | 5 | 0.5 | null | null | null | 0.77 | 0.95 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv|SAAFEC_S983.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 833 | ARTICLE | Contributions of the polar, uncharged amino acids to the stability of staphylococcal nuclease: evidence for mutational effects on the free energy of the denatured state. | 1,992 | 10.1021/bi00140a005 | 1610820 | Biochemistry;31;5717-28 | 3 | Shortle D|Meeker A K|Green S M | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":47606,"numValue":5.0,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv","SAAFEC_S983.csv"],"id":47607,"numValue":0.5,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":47608,"numValue":0.95,"references... | [{"id":7883,"numValue":4.0,"position":113,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6662 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,662 | train | mutant | 2,096 | 117 | 2,337 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | M114L | M114L | 1 | 1 | 0 | 0 | 114 | M | L | 5 | CONSERVATION | 1STN | 140 | null | 114 | A | E | true | false | 40.390885 | 25.83125 | 4,123 | ProTherm | 7 | Fluorescence | Thermal | NaOH | 25 mM | null | 1STN_A:M32L | 50.3 | -3.2 | null | null | null | null | 81 | null | null | null | null | null | null | null | null | null | yes | TM|DTM|DHVH|REVERSIBILITY | AUTOMUTE_S1749.csv|Saraboji_S1791.csv | PH|MEASURE|METHOD|BUFFER|BUFFER_CONC|_PDB_CHAIN_MUTATION | 382 | ARTICLE | The M32L substitution of staphylococcal nuclease: disagreement between theoretical prediction and experimental protein stability. | 1,996 | 10.1006/jmbi.1996.0180 | 8648619 | J Mol Biol;257;497-9 | 2 | Stites W E|Spencer D S | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"Thermal","type":"METHOD"},{"numValue":null,"strValue":"NaOH","type":"BUFFER"},{"numValue":null,"strValue":"25 mM","type":"BUFFER_CONC"},{"numValue":null,"strValue":"1STN_A:M32L","type"... | [{"datasets":[],"id":15245,"numValue":50.3,"references":[],"strValue":null,"type":"TM"},{"datasets":["AUTOMUTE_S1749.csv","Saraboji_S1791.csv"],"id":15246,"numValue":-3.2,"references":[],"strValue":null,"type":"DTM"},{"datasets":[],"id":15247,"numValue":81.0,"references":[],"strValue":null,"type":"DHVH"},{"datasets":[]... | [{"id":7884,"numValue":5.0,"position":114,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||||
fireprotdb:6663 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,663 | train | mutant | 2,096 | 117 | 2,337 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | M114L | M114L | 1 | 1 | 0 | 0 | 114 | M | L | 5 | CONSERVATION | 1STN | 140 | null | 114 | A | E | true | false | 40.390885 | 25.83125 | 13,545 | ProTherm | 7 | Fluorescence | GdnHCl | NaOH | 25 mM | 20 | 1STN_A:M32L | null | null | 4.7 | 0.8 | null | null | null | 0.72 | 6.47 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|_PDB_CHAIN_MUTATION | 382 | ARTICLE | The M32L substitution of staphylococcal nuclease: disagreement between theoretical prediction and experimental protein stability. | 1,996 | 10.1006/jmbi.1996.0180 | 8648619 | J Mol Biol;257;497-9 | 2 | Stites W E|Spencer D S | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"NaOH","type":"BUFFER"},{"numValue":null,"strValue":"25 mM","type":"BUFF... | [{"datasets":[],"id":50057,"numValue":4.7,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv"],"id":50058,"numValue":0.8,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":50059,"numValue":6.47,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":50060,"numValue":0.72,... | [{"id":7884,"numValue":5.0,"position":114,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||||
fireprotdb:6664 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,664 | train | mutant | 2,097 | 117 | 2,338 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | M114I | M114I | 1 | 1 | 0 | 0 | 114 | M | I | 5 | CONSERVATION | 1STN | 140 | null | 114 | A | E | true | false | 40.390885 | 25.83125 | 4,124 | ProTherm | 7 | Fluorescence | Thermal | NaOH | 25 mM | null | 1STN_A:M32I | 51.2 | -2.3 | null | null | null | null | 87 | null | null | null | null | null | null | null | null | null | yes | TM|DTM|DHVH|REVERSIBILITY | AUTOMUTE_S1749.csv|Saraboji_S1791.csv | PH|MEASURE|METHOD|BUFFER|BUFFER_CONC|_PDB_CHAIN_MUTATION | 382 | ARTICLE | The M32L substitution of staphylococcal nuclease: disagreement between theoretical prediction and experimental protein stability. | 1,996 | 10.1006/jmbi.1996.0180 | 8648619 | J Mol Biol;257;497-9 | 2 | Stites W E|Spencer D S | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"Thermal","type":"METHOD"},{"numValue":null,"strValue":"NaOH","type":"BUFFER"},{"numValue":null,"strValue":"25 mM","type":"BUFFER_CONC"},{"numValue":null,"strValue":"1STN_A:M32I","type"... | [{"datasets":[],"id":15249,"numValue":51.2,"references":[],"strValue":null,"type":"TM"},{"datasets":["AUTOMUTE_S1749.csv","Saraboji_S1791.csv"],"id":15250,"numValue":-2.3,"references":[],"strValue":null,"type":"DTM"},{"datasets":[],"id":15251,"numValue":87.0,"references":[],"strValue":null,"type":"DHVH"},{"datasets":[]... | [{"id":7884,"numValue":5.0,"position":114,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||||
fireprotdb:6665 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,665 | train | mutant | 2,097 | 117 | 2,338 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | M114I | M114I | 1 | 1 | 0 | 0 | 114 | M | I | 5 | CONSERVATION | 1STN | 140 | null | 114 | A | E | true | false | 40.390885 | 25.83125 | 13,546 | ProTherm | 7 | Fluorescence | GdnHCl | NaOH | 25 mM | 20 | 1STN_A:M32I | null | null | 4.9 | 0.6 | null | null | null | 0.75 | 6.57 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | SAAFEC_S1262.csv|SAAFEC_S983.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|_PDB_CHAIN_MUTATION | 382 | ARTICLE | The M32L substitution of staphylococcal nuclease: disagreement between theoretical prediction and experimental protein stability. | 1,996 | 10.1006/jmbi.1996.0180 | 8648619 | J Mol Biol;257;497-9 | 2 | Stites W E|Spencer D S | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"NaOH","type":"BUFFER"},{"numValue":null,"strValue":"25 mM","type":"BUFF... | [{"datasets":[],"id":50062,"numValue":4.9,"references":[],"strValue":null,"type":"DG"},{"datasets":["SAAFEC_S1262.csv","SAAFEC_S983.csv"],"id":50063,"numValue":0.6,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":50064,"numValue":6.57,"references":[],"strValue":null,"type":"M"},{"datasets":[],"id":5006... | [{"id":7884,"numValue":5.0,"position":114,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||||
fireprotdb:6666 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,666 | train | mutant | 6,316 | 117 | 6,916 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | M114A | M114A | 1 | 1 | 0 | 0 | 114 | M | A | 5 | CONSERVATION | 1STN | 140 | null | 114 | A | E | true | false | 40.390885 | 25.83125 | 13,451 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:M32A | null | null | 3.78 | 1.7 | null | null | null | 0.5 | 1.06 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 850 | ARTICLE | Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease. | 1,990 | 10.1021/bi00487a007 | 2261461 | Biochemistry;29;8033-41 | 3 | Shortle D|Stites W E|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":49602,"numValue":3.78,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":49603,"numValue":1.7,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":49604,"numValue":1.06,"references":[],"strValue":n... | [{"id":7884,"numValue":5.0,"position":114,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] | ||||||||||
fireprotdb:6667 | fireprotdb | LiteFold/FireProtDB | labeled/fireprotdb/fireprotdb_search_all.jsonl | tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl | 79354b4f8754e21c3eb41aaf3dd63ba34ae750cd | 6,667 | train | mutant | 6,317 | 117 | 6,917 | 231 | 231 | 11 | Thermonuclease | Staphylococcus aureus | 1 | 11 | Thermonuclease | Staphylococcus aureus | 1 | P00644 | IPR035437|IPR016071|IPR002071 | 3.1.31.1 | M114G | M114G | 1 | 1 | 0 | 0 | 114 | M | G | 5 | CONSERVATION | 1STN | 140 | null | 114 | A | E | true | false | 40.390885 | 25.83125 | 13,452 | ProTherm | 7 | Fluorescence | GdnHCl | Sodium phosphate | 25 mM | 20 | NaCl | 100 mM | 1STN_A:M32G | null | null | 3.08 | 2.4 | null | null | null | 0.4 | 1.09 | null | null | null | null | null | null | null | yes | DG|DDG|M|CM|REVERSIBILITY | guerios_625_map.csv|potapov_with_uniprot_mapping.csv|SAAFEC_S1262.csv | PH|EXP_TEMPERATURE|MEASURE|METHOD|BUFFER|BUFFER_CONC|ION|ION_CONC|_PDB_CHAIN_MUTATION | 850 | ARTICLE | Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease. | 1,990 | 10.1021/bi00487a007 | 2261461 | Biochemistry;29;8033-41 | 3 | Shortle D|Stites W E|Meeker A K | [{"numValue":7.0,"strValue":null,"type":"PH"},{"numValue":20.0,"strValue":null,"type":"EXP_TEMPERATURE"},{"numValue":null,"strValue":"Fluorescence","type":"MEASURE"},{"numValue":null,"strValue":"GdnHCl","type":"METHOD"},{"numValue":null,"strValue":"Sodium phosphate","type":"BUFFER"},{"numValue":null,"strValue":"25 mM",... | [{"datasets":[],"id":49607,"numValue":3.08,"references":[],"strValue":null,"type":"DG"},{"datasets":["guerios_625_map.csv","potapov_with_uniprot_mapping.csv","SAAFEC_S1262.csv"],"id":49608,"numValue":2.4,"references":[],"strValue":null,"type":"DDG"},{"datasets":[],"id":49609,"numValue":1.09,"references":[],"strValue":n... | [{"id":7884,"numValue":5.0,"position":114,"positionArray":null,"positionRange":null,"strValue":null,"type":"CONSERVATION"}] |
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