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# Datasets |
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This directory includes all the downstream task datasets of the LucaOne paper (https://www.nature.com/articles/s42256-025-01044-4). |
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--- |
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configs: |
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- config_name: CentralDogma |
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data_files: |
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- split: train |
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path: dataset/CentralDogma/gene_protein/binary_class/train/train.csv |
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- split: dev |
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path: dataset/CentralDogma/gene_protein/binary_class/dev/dev.csv |
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- split: test |
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path: dataset/CentralDogma/gene_protein/binary_class/test/test.csv |
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- split: label_info |
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dataset/CentralDogma/gene_protein/binary_class/label.txt |
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- config_name: CentralDogmaCDSProtein |
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data_files: |
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- split: train |
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path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/train/train.csv |
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- split: dev |
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path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/dev/dev.csv |
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- split: test |
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path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/test/test.csv |
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- split: label_info |
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dataset/CentralDogmaCDSProtein/gene_protein/binary_class/label.txt |
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- config_name: CentralDogmaV2 |
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data_files: |
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- split: train |
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path: dataset/CentralDogmaV2/gene_protein/binary_class/train/train.csv |
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- split: dev |
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path: dataset/CentralDogmaV2/gene_protein/binary_class/dev/dev.csv |
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- split: test |
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path: dataset/CentralDogmaV2/gene_protein/binary_class/test/test.csv |
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- split: label_info |
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dataset/CentralDogmaV2/gene_protein/binary_class/label.txt |
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- config_name: CrossSpeciesHomologousGenePairsV1 |
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data_files: |
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- split: train |
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path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/train/train.csv |
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- split: dev |
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path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/dev/dev.csv |
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- split: test |
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path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/test/test.csv |
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- split: label_info |
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dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/label.txt |
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- config_name: CrossSpeciesHomologousGenePairsV2 |
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data_files: |
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- split: train |
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path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/train/train.csv |
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- split: dev |
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path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/dev/dev.csv |
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- split: test |
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path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/test/test.csv |
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- split: label_info |
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dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/label.txt |
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- config_name: GenusTax |
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data_files: |
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- split: train |
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path: dataset/GenusTax/gene/multi_class/train/train.csv |
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- split: dev |
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path: dataset/GenusTax/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/GenusTax/gene/multi_class/test/test.csv |
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- split: label_info |
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dataset/GenusTax/gene/multi_class/label.txt |
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- config_name: InfA |
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data_files: |
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- split: train |
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path: dataset/InfA/gene_gene/binary_class/train/train.csv |
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- split: dev |
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path: dataset/InfA/gene_gene/binary_class/dev/dev.csv |
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- split: test |
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path: dataset/InfA/gene_gene/binary_class/test/test.csv |
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- split: label_info |
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dataset/InfA/gene_gene/binary_class/label.txt |
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- config_name: ncRNAFam |
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data_files: |
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- split: train |
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path: dataset/ncRNAFam/gene/multi_class/train/train.csv |
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- split: dev |
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path: dataset/ncRNAFam/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/ncRNAFam/gene/multi_class/test/test.csv |
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- split: label_info |
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dataset/ncRNAFam/gene/multi_class/label.txt |
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- config_name: ncRPI |
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data_files: |
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- split: train |
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path: dataset/ncRPI/gene_protein/binary_class/train/train.csv |
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- split: dev |
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path: dataset/ncRPI/gene_protein/binary_class/dev/dev.csv |
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- split: test |
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path: dataset/ncRPI/gene_protein/binary_class/test/test.csv |
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- split: label_info |
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dataset/ncRPI/gene_protein/binary_class/label.txt |
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- config_name: PPI |
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data_files: |
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- split: train |
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path: dataset/PPI/protein/binary_class/train/train.csv |
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- split: dev |
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path: dataset/PPI/protein/binary_class/dev/dev.csv |
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- split: test |
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path: dataset/PPI/protein/binary_class/test/test.csv |
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- split: label_info |
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dataset/PPI/protein/binary_class/label.txt |
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- config_name: ProtLoc |
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data_files: |
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- split: train |
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path: dataset/ProtLoc/protein/multi_class/train/train.csv |
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- split: dev |
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path: dataset/ProtLoc/protein/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/ProtLoc/protein/multi_class/test/test.csv |
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- split: label_info |
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dataset/ProtLoc/protein/multi_class/label.txt |
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- config_name: ProtLocCDSGene |
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data_files: |
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- split: train |
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path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv |
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- split: dev |
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path: dataset/ProtLocCDSGene/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv |
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- split: label_info |
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dataset/ProtLocCDSGene/gene/multi_class/label.txt |
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- config_name: ProtLocCDSProt |
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data_files: |
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- split: train |
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path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv |
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- split: dev |
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path: dataset/ProtLocCDSProt/protein/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/ProtLocCDSProt/protein/multi_class/test/test.csv |
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- split: label_info |
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dataset/ProtLocCDSProt/protein/multi_class/label.txt |
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- config_name: ProtStab |
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data_files: |
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- split: train |
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path: dataset/ProtStab/protein/regression/train/train.csv |
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- split: dev |
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path: dataset/ProtStab/protein/regression/dev/dev.csv |
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- split: test |
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path: dataset/ProtStab/protein/regression/test/test.csv |
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- split: label_info |
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dataset/ProtStab/protein/regression/label.txt |
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- config_name: SpeciesTax |
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data_files: |
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- split: train |
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path: dataset/SpeciesTax/gene/multi_class/train/train.csv |
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- split: dev |
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path: dataset/SpeciesTax/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/SpeciesTax/gene/multi_class/test/test.csv |
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- split: label_info |
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dataset/SpeciesTax/gene/multi_class/label.txt |
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- config_name: SupKTax |
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data_files: |
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- split: train |
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path: dataset/SupKTax/gene/multi_class/train/train.csv |
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- split: dev |
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path: dataset/SupKTax/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/SupKTax/gene/multi_class/test/test.csv |
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- split: label_info |
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dataset/SupKTax/gene/multi_class/label.txt |
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--- |
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# LucaOne-Downstream-Task-Datasets |
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Usage: |
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```python |
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from datasets import load_dataset |
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# load PPI dataset |
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ds = load_dataset("LucaGroup/LucaOne-Downstream-Task-Datasets", name="ncRPI") |
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``` |
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