method2testcases stringlengths 118 6.63k |
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### Question:
MostSimilarGuess { public PrecisionRecallAccumulator getPrecisionRecall(int n, double threshold) { PrecisionRecallAccumulator pr = new PrecisionRecallAccumulator(n, threshold); TIntDoubleMap actual = new TIntDoubleHashMap(); for (KnownSim ks : known.getMostSimilar()) { pr.observe(ks.similarity); actual.pu... |
### Question:
FileDownloader { public File download(URL url, File file) throws InterruptedException { LOG.info("beginning download of " + url + " to " + file); for (int i=1; i <= maxAttempts; i++) { try { AtomicBoolean stop = new AtomicBoolean(false); DownloadInfo info = new DownloadInfo(url); DownloadMonitor monitor =... |
### Question:
JvmUtils { public synchronized static String getFullClassName(String shortName) { if (NAME_TO_CLASS != null) { return NAME_TO_CLASS.get(shortName); } NAME_TO_CLASS = new HashMap<String, String>(); for (File file : getClassPathAsList()) { if (file.length() > MAX_FILE_SIZE) { LOG.debug("skipping looking for... |
### Question:
JvmUtils { public static Class classForShortName(String shortName) { String fullName = getFullClassName(shortName); if (fullName == null) { return null; } try { return Class.forName(fullName); } catch (ClassNotFoundException e) { throw new RuntimeException(e); } } static String getClassPath(); synchroniz... |
### Question:
KafkaSinkFactory implements SinkFactory { @Override public String name() { return "kafka"; } @Override String name(); @Override Single<Sink<T>> create(Vertx vertx, String name, Config config); }### Answer:
@Test public void testName() { assertThat(factory.name()).isEqualTo("kafka"); } |
### Question:
ReflectionHelper { public static void invokeTransformationMethod(Object mediator, Method method) { method = ReflectionHelper.makeAccessibleIfNot(method); List<Object> values = getParameterFromTransformationMethod(method); try { Class<?> returnType = method.getReturnType(); Outbound outbound = method.getAn... |
### Question:
ReflectionHelper { static Sink<Object> getSinkOrFail(String name) { Sink<Object> sink = FluidRegistry.sink(Objects.requireNonNull(name)); if (sink == null) { throw new IllegalArgumentException("Unable to find the sink " + name); } return sink; } private ReflectionHelper(); static void set(Object mediator... |
### Question:
ReflectionHelper { static Source<Object> getSourceOrFail(String name) { Source<Object> src = FluidRegistry.source(Objects.requireNonNull(name)); if (src == null) { throw new IllegalArgumentException("Unable to find the source " + name); } return src; } private ReflectionHelper(); static void set(Object m... |
### Question:
FluidRegistry { public static synchronized <T> void register(Source<T> source) { sources.put(Objects.requireNonNull(source.name(), NAME_NOT_PROVIDED_MESSAGE), source); } private FluidRegistry(); static synchronized void initialize(Vertx vertx, FluidConfig config); static void reset(); static synchronized... |
### Question:
FluidRegistry { public static synchronized void initialize(Vertx vertx, FluidConfig config) { sinks.putAll(SourceAndSinkBuilder.createSinksFromConfiguration(vertx, config)); sources.putAll(SourceAndSinkBuilder.createSourcesFromConfiguration(vertx, config)); } private FluidRegistry(); static synchronized ... |
### Question:
SourceAndSinkBuilder { public static Map<String, Source> createSourcesFromConfiguration(Vertx vertx, FluidConfig config) { Map<String, Source> map = new HashMap<>(); Optional<Config> sources = config.getConfig("sources"); if (sources.isPresent()) { Iterator<String> names = sources.get().names(); while (na... |
### Question:
SourceAndSinkBuilder { public static Map<String, Sink> createSinksFromConfiguration(Vertx vertx, FluidConfig config) { Map<String, Sink> map = new HashMap<>(); Optional<Config> sinks = config.getConfig("sinks"); if (sinks.isPresent()) { Iterator<String> names = sinks.get().names(); while (names.hasNext())... |
### Question:
CommonHeaders { public static String address(Message message) { return (String) message.get(ADDRESS); } private CommonHeaders(); @SuppressWarnings("unchecked") static T original(Message message); @SuppressWarnings("unchecked") static Optional<T> originalOpt(Message message); static String address(Message... |
### Question:
CommonHeaders { @SuppressWarnings("unchecked") public static Optional<String> addressOpt(Message message) { return message.getOpt(ADDRESS); } private CommonHeaders(); @SuppressWarnings("unchecked") static T original(Message message); @SuppressWarnings("unchecked") static Optional<T> originalOpt(Message m... |
### Question:
KafkaSinkFactory implements SinkFactory { @Override public <T> Single<Sink<T>> create(Vertx vertx, String name, Config config) { return Single.just(new KafkaSink<>(vertx, name, config)); } @Override String name(); @Override Single<Sink<T>> create(Vertx vertx, String name, Config config); }### Answer:
@T... |
### Question:
CommonHeaders { public static String key(Message message) { return (String) message.get(KEY); } private CommonHeaders(); @SuppressWarnings("unchecked") static T original(Message message); @SuppressWarnings("unchecked") static Optional<T> originalOpt(Message message); static String address(Message message... |
### Question:
CommonHeaders { @SuppressWarnings("unchecked") public static Optional<String> keyOpt(Message message) { return message.getOpt(KEY); } private CommonHeaders(); @SuppressWarnings("unchecked") static T original(Message message); @SuppressWarnings("unchecked") static Optional<T> originalOpt(Message message);... |
### Question:
CommonHeaders { @SuppressWarnings("unchecked") public static <T> T original(Message message) { return (T) message.get(ORIGINAL); } private CommonHeaders(); @SuppressWarnings("unchecked") static T original(Message message); @SuppressWarnings("unchecked") static Optional<T> originalOpt(Message message); st... |
### Question:
CommonHeaders { @SuppressWarnings("unchecked") public static <T> Optional<T> originalOpt(Message message) { return message.getOpt(ORIGINAL); } private CommonHeaders(); @SuppressWarnings("unchecked") static T original(Message message); @SuppressWarnings("unchecked") static Optional<T> originalOpt(Message ... |
### Question:
DefaultSource implements Source<T> { @Override public Source<T> named(String name) { if (Strings.isBlank(name)) { throw new IllegalArgumentException("The name cannot be `null` or blank"); } return new DefaultSource<>(flow, name, attributes); } DefaultSource(Publisher<Message<T>> items, String name, Map<St... |
### Question:
DefaultSource implements Source<T> { @Override public <X> Source<X> compose(Function<Publisher<Message<T>>, Publisher<Message<X>>> mapper) { return new DefaultSource<>(asFlowable().compose(mapper::apply), name, attributes); } DefaultSource(Publisher<Message<T>> items, String name, Map<String, Object> attr... |
### Question:
Tuple implements Iterable<Object> { Tuple(Object... items) { if (items == null) { this.items = Collections.emptyList(); } else { for (Object o : items) { if (o == null) { throw new IllegalArgumentException("A tuple cannot contain a `null` value"); } } this.items = Collections.unmodifiableList(Arrays.asLis... |
### Question:
EventBusSourceFactory implements SourceFactory { @Override public String name() { return "eventbus"; } @Override String name(); @Override Single<Source<T>> create(Vertx vertx, String name, Config config); }### Answer:
@Test public void testName() { assertThat(factory.name()).isEqualTo("eventbus"); } |
### Question:
EventBusSourceFactory implements SourceFactory { @Override public <T> Single<Source<T>> create(Vertx vertx, String name, Config config) { String address = config.getString("address") .orElse(name); if (address == null) { throw new IllegalArgumentException("Either address or name must be set"); } return Si... |
### Question:
EventBusSinkFactory implements SinkFactory { @Override public String name() { return "eventbus"; } @Override String name(); @Override Single<Sink<T>> create(Vertx vertx, String name, Config conf); }### Answer:
@Test public void testName() { assertThat(factory.name()).isEqualTo("eventbus"); } |
### Question:
EventBusSinkFactory implements SinkFactory { @Override public <T> Single<Sink<T>> create(Vertx vertx, String name, Config conf) { return Single.just(new EventBusSink<>(vertx, conf)); } @Override String name(); @Override Single<Sink<T>> create(Vertx vertx, String name, Config conf); }### Answer:
@Test(ex... |
### Question:
KafkaSourceFactory implements SourceFactory { @Override public String name() { return "kafka"; } @Override String name(); @Override Single<Source<T>> create(Vertx vertx, String name, Config config); }### Answer:
@Test public void testName() { assertThat(factory.name()).isEqualTo("kafka"); } |
### Question:
CamelSink implements Sink<T> { public CamelContext camelContext() { return camelContext; } CamelSink(String name, Config config); @Override String name(); @Override Completable dispatch(Message<T> message); CamelContext camelContext(); }### Answer:
@Test public void shouldWrapIntegersIntoCamelBodies(Test... |
### Question:
CamelSinkFactory implements SinkFactory { @Override public String name() { return "camel"; } @Override String name(); @Override Single<Sink<T>> create(Vertx vertx, String name, Config config); }### Answer:
@Test public void testName() { CamelSinkFactory factory = new CamelSinkFactory(); assertThat(facto... |
### Question:
CamelSinkFactory implements SinkFactory { @Override public <T> Single<Sink<T>> create(Vertx vertx, String name, Config config) { return Single.just(new CamelSink<>(name, config)); } @Override String name(); @Override Single<Sink<T>> create(Vertx vertx, String name, Config config); }### Answer:
@Test(exp... |
### Question:
InMemoryDocumentView implements DocumentView { @Override public synchronized Completable save(String collection, String key, Map<String, Object> document) { Objects.requireNonNull(collection, NULL_COLLECTION_MESSAGE); Objects.requireNonNull(key, NULL_KEY_MESSAGE); Objects.requireNonNull(collection, "The `... |
### Question:
KafkaSourceFactory implements SourceFactory { @Override public <T> Single<Source<T>> create(Vertx vertx, String name, Config config) { return Single.just(new KafkaSource<>(vertx, name, config)); } @Override String name(); @Override Single<Source<T>> create(Vertx vertx, String name, Config config); }### ... |
### Question:
ReflectionHelper { public static void set(Object mediator, Field field, Object source) { if (!field.isAccessible()) { field.setAccessible(true); } try { field.set(mediator, source); } catch (IllegalAccessException e) { throw new IllegalStateException("Unable to set field " + field.getName() + " from " + m... |
### Question:
ReflectionHelper { public static void invokeFunction(Object mediator, Method method) { method = ReflectionHelper.makeAccessibleIfNot(method); List<Flowable<Object>> sources = getFlowableForParameters(method); Function function = method.getAnnotation(Function.class); Sink<Object> sink = null; if (function.... |
### Question:
PostgreSQLHStoreType extends ImmutableType<Map> { @Override protected Map get(ResultSet rs, String[] names, SessionImplementor session, Object owner) throws SQLException { return (Map) rs.getObject(names[0]); } PostgreSQLHStoreType(); @Override int[] sqlTypes(); static final PostgreSQLHStoreType INSTANCE;... |
### Question:
PostgreSQLGuavaRangeType extends ImmutableType<Range> implements DynamicParameterizedType { public static Range<Integer> integerRange(String range) { return ofString(range, new Function<String, Integer>() { @Override public Integer apply(String s) { return Integer.parseInt(s); } }, Integer.class); } Postg... |
### Question:
JacksonUtil { public static <T> T clone(T value) { return ObjectMapperWrapper.INSTANCE.clone(value); } static T fromString(String string, Class<T> clazz); static T fromString(String string, Type type); static String toString(Object value); static JsonNode toJsonNode(String value); static T clone(T value)... |
### Question:
JsonTypeDescriptor extends AbstractTypeDescriptor<Object> implements DynamicParameterizedType { @Override public boolean areEqual(Object one, Object another) { if (one == another) { return true; } if (one == null || another == null) { return false; } if (one instanceof String && another instanceof String)... |
### Question:
SQLExtractor { public static String from(Query query) { AbstractProducedQuery abstractProducedQuery = query.unwrap(AbstractProducedQuery.class); String[] sqls = abstractProducedQuery .getProducer() .getFactory() .getQueryPlanCache() .getHQLQueryPlan(abstractProducedQuery.getQueryString(), false, Collectio... |
### Question:
Configuration { public Properties getProperties() { return properties; } private Configuration(); Properties getProperties(); ObjectMapperWrapper getObjectMapperWrapper(); Integer integerProperty(PropertyKey propertyKey); Long longProperty(PropertyKey propertyKey); Boolean booleanProperty(PropertyKey pro... |
### Question:
PostgreSQLHStoreType extends ImmutableType<Map> { @Override protected Map get(ResultSet rs, String[] names, SharedSessionContractImplementor session, Object owner) throws SQLException { return (Map) rs.getObject(names[0]); } PostgreSQLHStoreType(); @Override int[] sqlTypes(); static final PostgreSQLHStore... |
### Question:
Range implements Serializable { public static Range<LocalDateTime> localDateTimeRange(String range) { return ofString(range, parseLocalDateTime().compose(unquote()), LocalDateTime.class); } private Range(T lower, T upper, int mask, Class<T> clazz); @SuppressWarnings("unchecked") static Range<T> closed(T ... |
### Question:
PostgreSQLGuavaRangeType extends ImmutableType<Range> implements DynamicParameterizedType { public static Range<Integer> integerRange(String range) { return ofString(range, Integer::parseInt, Integer.class); } PostgreSQLGuavaRangeType(); @Override int[] sqlTypes(); @SuppressWarnings("unchecked") static Ra... |
### Question:
SQLExtractor { public static String from(Query query) { AbstractQueryImpl abstractQuery = query.unwrap(AbstractQueryImpl.class); SessionImplementor session = ReflectionUtils.getFieldValue(abstractQuery, "session"); String[] sqls = session.getFactory() .getQueryPlanCache() .getHQLQueryPlan(abstractQuery.ge... |
### Question:
PostgreSQLGuavaRangeType extends ImmutableType<Range> { public static Range<Integer> integerRange(String range) { return ofString(range, new Function<String, Integer>() { @Override public Integer apply(String s) { return Integer.parseInt(s); } }, Integer.class); } PostgreSQLGuavaRangeType(); @Override int... |
### Question:
AuthorizationsCollector implements IAuthorizator { protected Authorization parseAuthLine(String line) throws ParseException { String[] tokens = line.split("\\s+"); String keyword = tokens[0].toLowerCase(); switch (keyword) { case "topic": return createAuthorization(line, tokens); case "user": m_parsingUse... |
### Question:
ACLFileParser { public static AuthorizationsCollector parse(File file) throws ParseException { if (file == null) { LOG.warn("parsing NULL file, so fallback on default configuration!"); return AuthorizationsCollector.emptyImmutableCollector(); } if (!file.exists()) { LOG.warn( String.format( "parsing not e... |
### Question:
ConfigurationParser { void parse(File file) throws ParseException { if (file == null) { LOG.warn("parsing NULL file, so fallback on default configuration!"); return; } if (!file.exists()) { LOG.warn( String.format( "parsing not existing file %s, so fallback on default configuration!", file.getAbsolutePath... |
### Question:
BrokerInterceptor implements Interceptor { @Override public void notifyClientConnected(final MqttConnectMessage msg) { for (final InterceptHandler handler : this.handlers.get(InterceptConnectMessage.class)) { if(LOG.isDebugEnabled()){ LOG.debug("Sending MQTT CONNECT message to interceptor. CId={}, interce... |
### Question:
BrokerInterceptor implements Interceptor { @Override public void notifyClientDisconnected(final String clientID, final String username) { for (final InterceptHandler handler : this.handlers.get(InterceptDisconnectMessage.class)) { if(LOG.isDebugEnabled()){ LOG.debug("Notifying MQTT client disconnection to... |
### Question:
BrokerInterceptor implements Interceptor { @Override public void notifyTopicPublished(final MoquetteMessage msg, final String clientID, final String username) { int messageId = msg.getMessageId(); String topic = msg.getTopic(); for (final InterceptHandler handler : this.handlers.get(InterceptPublishMessag... |
### Question:
BrokerInterceptor implements Interceptor { @Override public void notifyTopicSubscribed(final Subscription sub, final String username) { for (final InterceptHandler handler : this.handlers.get(InterceptSubscribeMessage.class)) { if(LOG.isDebugEnabled()){ LOG.debug("Notifying MQTT SUBSCRIBE message to inter... |
### Question:
BrokerInterceptor implements Interceptor { @Override public void notifyTopicUnsubscribed(final String topic, final String clientID, final String username) { for (final InterceptHandler handler : this.handlers.get(InterceptUnsubscribeMessage.class)) { if(LOG.isDebugEnabled()){ LOG.debug("Notifying MQTT UNS... |
### Question:
MapDBPersistentStore implements IStore { @Override public void close() { if (this.m_db.isClosed()) { LOG.warn("MapDB store is already closed. Nothing will be done"); return; } LOG.info("Performing last commit to MapDB"); this.m_db.commit(); LOG.info("Closing MapDB store"); this.m_db.close(); LOG.info("Sto... |
### Question:
ProtocolProcessor { public void processUnsubscribe(Channel channel, MqttUnsubscribeMessage msg) { List<String> topics = msg.payload().topics(); String clientID = NettyUtils.clientID(channel); LOG.info("Processing UNSUBSCRIBE message. CId={}, topics={}", clientID, topics); ClientSession clientSession = m_s... |
### Question:
ProtocolProcessor { static MqttQoS lowerQosToTheSubscriptionDesired(Subscription sub, MqttQoS qos) { if (qos.value() > sub.getRequestedQos().value()) { qos = sub.getRequestedQos(); } return qos; } ProtocolProcessor(); void init(SubscriptionsDirectory subscriptions, IMessagesStore storageService, ISessions... |
### Question:
DBAuthenticator implements IAuthenticator { @Override public synchronized boolean checkValid(String clientId, String username, byte[] password) { if (username == null || password == null) { LOG.info("username or password was null"); return false; } ResultSet r = null; try { this.preparedStatement.setStrin... |
### Question:
ChainingPrincipalResolver implements PrincipalResolver { public boolean supports(final Credential credential) { return this.chain.get(0).supports(credential); } void setChain(final List<PrincipalResolver> chain); Principal resolve(final Credential credential); boolean supports(final Credential credential... |
### Question:
ChainingPrincipalResolver implements PrincipalResolver { public Principal resolve(final Credential credential) { Principal result = null; Credential input = credential; for (final PrincipalResolver resolver : this.chain) { if (result != null) { input = new IdentifiableCredential(result.getId()); } result ... |
### Question:
LegacyAuthenticationHandlerAdapter implements AuthenticationHandler { @Override public HandlerResult authenticate(final Credential credential) throws GeneralSecurityException, PreventedException { try { if (this.legacyHandler.authenticate(credentialsAdapter.convert(credential))) { final CredentialMetaData... |
### Question:
JRadiusServerImpl implements RadiusServer { @Override public boolean authenticate(final String username, final String password) throws PreventedException { final AttributeList attributeList = new AttributeList(); attributeList.add(new Attr_UserName(username)); attributeList.add(new Attr_UserPassword(passw... |
### Question:
SmartOpenIdController extends DelegateController implements Serializable { @Override public boolean canHandle(final HttpServletRequest request, final HttpServletResponse response) { String openIdMode = request.getParameter("openid.mode"); if (openIdMode != null && openIdMode.equals("associate")) { logger.... |
### Question:
SmartOpenIdController extends DelegateController implements Serializable { public Map<String, String> getAssociationResponse(final HttpServletRequest request) { ParameterList parameters = new ParameterList(request.getParameterMap()); final String mode = parameters.hasParameter("openid.mode") ? parameters.... |
### Question:
AvailableForm extends BaseForm { public boolean isRegistrationForm(){ return Constants.FORM_DISCRIMINATOR_REGISTRATION.equalsIgnoreCase(getDiscriminator()) || Constants.FORM_JSON_DISCRIMINATOR_REGISTRATION.equalsIgnoreCase(getDiscriminator()) || Constants.FORM_JSON_DISCRIMINATOR_GENERIC_REGISTRATION.equal... |
### Question:
LocationController { public List<Location> downloadLocationFromServerByName(String name) throws LocationDownloadException { try { return locationService.downloadLocationsByName(name); } catch (IOException e) { Log.e(getClass().getSimpleName(), "Error while searching for patients in the server", e); throw ... |
### Question:
LocationController { public Location downloadLocationFromServerByUuid(String uuid) throws LocationDownloadException { try { return locationService.downloadLocationByUuid(uuid); } catch (IOException e) { Log.e(getClass().getSimpleName(), "Error while searching for patients in the server", e); throw new Loc... |
### Question:
LocationController { public List<Location> getAllLocations() throws LocationLoadException { try { return locationService.getAllLocations(); } catch (IOException e) { throw new LocationLoadException(e); } } LocationController(LocationService locationService); List<Location> downloadLocationFromServerByName... |
### Question:
LocationController { public Location getLocationByUuid(String uuid) throws LocationLoadException { try { return locationService.getLocationByUuid(uuid); } catch (IOException e) { throw new LocationLoadException(e); } } LocationController(LocationService locationService); List<Location> downloadLocationFro... |
### Question:
ConceptController { public List<Concept> downloadConceptsByNames(List<String> names) throws ConceptDownloadException { HashSet<Concept> result = new HashSet<>(); for (String name : names) { List<Concept> concepts = downloadConceptsByNamePrefix(name); Iterator<Concept> iterator = concepts.iterator(); while... |
### Question:
ConceptController { public Concept getConceptByName(String name) throws ConceptFetchException { try { List<Concept> concepts = conceptService.getConceptsByName(name); for (Concept concept : concepts) { if (concept.getName().equals(name)) { return concept; } } } catch (IOException e) { throw new ConceptFet... |
### Question:
ObservationController { public void saveObservations(List<Observation> observations) throws SaveObservationException { try { observationService.saveObservations(observations); } catch (IOException e) { throw new SaveObservationException(e); } } ObservationController(ObservationService observationService, ... |
### Question:
CohortController { public List<Cohort> getAllCohorts() throws CohortFetchException { try { return cohortService.getAllCohorts(); } catch (IOException e) { throw new CohortFetchException(e); } } CohortController(CohortService cohortService, LastSyncTimeService lastSyncTimeService, SntpService sntpService, ... |
### Question:
CohortController { public List<CohortData> downloadCohortData(String[] cohortUuids, String defaulLocation) throws CohortDownloadException { ArrayList<CohortData> allCohortData = new ArrayList<>(); for (String cohortUuid : cohortUuids) { allCohortData.add(downloadCohortDataByUuid(cohortUuid, defaulLocation... |
### Question:
CohortController { public void saveAllCohorts(List<Cohort> cohorts) throws CohortSaveException { try { cohortService.saveCohorts(cohorts); } catch (IOException e) { throw new CohortSaveException(e); } } CohortController(CohortService cohortService, LastSyncTimeService lastSyncTimeService, SntpService sntp... |
### Question:
CohortController { public int countAllCohorts() throws CohortFetchException { try { return cohortService.countAllCohorts(); } catch (IOException e) { throw new CohortFetchException(e); } } CohortController(CohortService cohortService, LastSyncTimeService lastSyncTimeService, SntpService sntpService, Muzim... |
### Question:
MuzimaProgressDialog { @JavascriptInterface public void show(String title) { dialog.setTitle(title); dialog.setMessage(dialog.getContext().getResources().getString(R.string.general_progress_message)); dialog.show(); } MuzimaProgressDialog(Activity activity); MuzimaProgressDialog(ProgressDialog dialog); ... |
### Question:
MuzimaProgressDialog { @JavascriptInterface public void dismiss() { if (dialog.isShowing()) { dialog.dismiss(); } } MuzimaProgressDialog(Activity activity); MuzimaProgressDialog(ProgressDialog dialog); @JavascriptInterface void show(String title); @JavascriptInterface void updateMessage(String message);... |
### Question:
HTMLFormDataStore { @JavascriptInterface public void saveHTML(String jsonPayload, String status) { saveHTML(jsonPayload, status, false); } HTMLFormDataStore(HTMLFormWebViewActivity formWebViewActivity, FormData formData, boolean isFormReload, MuzimaApplication application); @JavascriptInterface String get... |
### Question:
FormDataStore { @JavascriptInterface public String getFormPayload() { return formData.getJsonPayload(); } FormDataStore(FormWebViewActivity formWebViewActivity, FormController formController, FormData formData); @JavascriptInterface void save(String jsonData, String xmlData, String status); @JavascriptInt... |
### Question:
StringUtils { public static String getCommaSeparatedStringFromList(final List<String> values){ if(values == null){ return ""; } StringBuilder builder = new StringBuilder(); for (String next : values) { builder.append(next).append(","); } String commaSeparated = builder.toString(); return commaSeparated.su... |
### Question:
PatientComparator implements Comparator<Patient> { @Override public int compare(Patient patient1, Patient patient2) { if (patient1 == null) { patient1 = new Patient(); } if (patient2 == null) { patient2 = new Patient(); } int familyNameCompareResult = StringUtils.nullSafeCompare(patient1.getFamilyName(), ... |
### Question:
Concepts extends ArrayList<ConceptWithObservations> { public void sortByDate() { Collections.sort(this, new Comparator<ConceptWithObservations>() { @Override public int compare(ConceptWithObservations lhs, ConceptWithObservations rhs) { return -(lhs.getObservations().get(0).getObservationDatetime() .compa... |
### Question:
Encounters extends ArrayList<EncounterWithObservations> { public void sortByDate() { Collections.sort(this, new Comparator<EncounterWithObservations>() { @Override public int compare(EncounterWithObservations lhs, EncounterWithObservations rhs) { if (lhs.getEncounter().getEncounterDatetime()==null) return... |
### Question:
MuzimaSyncService { public void consolidatePatients() { List<Patient> allLocalPatients = patientController.getAllPatientsCreatedLocallyAndNotSynced(); for (Patient localPatient : allLocalPatients) { Patient patientFromServer = patientController.consolidateTemporaryPatient(localPatient); if (patientFromSer... |
### Question:
MuzimaSyncService { public List<Patient> updatePatientsNotPartOfCohorts() { List<Patient> patientsNotInCohorts = patientController.getPatientsNotInCohorts(); List<Patient> downloadedPatients = new ArrayList<>(); try { for (Patient patient : patientsNotInCohorts) { downloadedPatients.add(patientController.... |
### Question:
ObservationParserUtility { public Encounter getEncounterEntity(Date encounterDateTime,String formUuid,String providerId, int locationId, String userSystemId, Patient patient, String formDataUuid) { Encounter encounter = new Encounter(); encounter.setProvider(getDummyProvider(providerId)); encounter.setUui... |
### Question:
ObservationParserUtility { public List<Concept> getNewConceptList() { return newConceptList; } ObservationParserUtility(MuzimaApplication muzimaApplication, boolean createObservationsForConceptsNotAvailableLocally); Encounter getEncounterEntity(Date encounterDateTime,String formUuid,String providerId, in... |
### Question:
ObservationParserUtility { public Observation getObservationEntity(Concept concept, String value) throws ConceptController.ConceptFetchException, ConceptController.ConceptParseException, ObservationController.ParseObservationException{ if (concept == null) { throw new ObservationController.ParseObservatio... |
### Question:
HTMLFormObservationCreator { public void createAndPersistObservations(String jsonResponse,String formDataUuid) { parseJSONResponse(jsonResponse,formDataUuid); try { saveObservationsAndRelatedEntities(); } catch (ConceptController.ConceptSaveException e) { Log.e(getClass().getSimpleName(), "Error while sav... |
### Question:
HTMLConceptParser { public List<String> parse(String html) { Set<String> concepts = new HashSet<>(); Document htmlDoc = Jsoup.parse(html); Elements elements = htmlDoc.select("*:not(div)[" + DATA_CONCEPT_TAG + "]"); for (Element element : elements) { concepts.add(getConceptName(element.attr(DATA_CONCEPT_TA... |
### Question:
ConceptParser { public List<String> parse(String model) { try { if (StringUtils.isEmpty(model)) { return new ArrayList<>(); } parser.setInput(new ByteArrayInputStream(model.getBytes()), null); parser.nextTag(); return readConceptName(parser); } catch (Exception e) { throw new ParseConceptException(e); } }... |
### Question:
PatientController { public List<Patient> getAllPatients() throws PatientLoadException { try { return patientService.getAllPatients(); } catch (IOException e) { throw new PatientLoadException(e); } } PatientController(PatientService patientService, CohortService cohortService, FormService formService,Patie... |
### Question:
PatientController { public int countAllPatients() throws PatientLoadException { try { return patientService.countAllPatients(); } catch (IOException e) { throw new PatientLoadException(e); } } PatientController(PatientService patientService, CohortService cohortService, FormService formService,PatientTagS... |
### Question:
PatientController { public void replacePatients(List<Patient> patients) throws PatientSaveException { try { patientService.updatePatients(patients); } catch (IOException e) { throw new PatientSaveException(e); } } PatientController(PatientService patientService, CohortService cohortService, FormService fo... |
### Question:
PatientController { public List<Patient> getPatients(String cohortId) throws PatientLoadException { try { List<CohortMember> cohortMembers = cohortService.getCohortMembers(cohortId); return patientService.getPatientsFromCohortMembers(cohortMembers); } catch (IOException e) { throw new PatientLoadException... |
### Question:
ConceptsByPatient extends ConceptAction { @Override Concepts get() throws ObservationController.LoadObservationException { return controller.getConceptWithObservations(patientUuid); } ConceptsByPatient(ConceptController conceptController, ObservationController controller, String patientUuid); @Override St... |
### Question:
PatientController { public List<Patient> searchPatientLocally(String term, String cohortUuid) throws PatientLoadException { try { return StringUtils.isEmpty(cohortUuid) ? patientService.searchPatients(term) : patientService.searchPatients(term, cohortUuid); } catch (IOException | ParseException e) { throw... |
### Question:
PatientController { public Patient getPatientByUuid(String uuid) throws PatientLoadException { try { return patientService.getPatientByUuid(uuid); } catch (IOException e) { throw new PatientLoadException(e); } } PatientController(PatientService patientService, CohortService cohortService, FormService form... |
### Question:
PatientController { public List<Patient> searchPatientOnServer(String name) { try { return patientService.downloadPatientsByName(name); } catch (IOException e) { Log.e(getClass().getSimpleName(), "Error while searching for patients in the server", e); } return new ArrayList<>(); } PatientController(Patien... |
### Question:
PatientController { public Patient consolidateTemporaryPatient(Patient patient) { try { return patientService.consolidateTemporaryPatient(patient); } catch (IOException e) { Log.e(getClass().getSimpleName(), "Error while consolidating the temporary patient.", e); } return null; } PatientController(Patient... |
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