method2testcases stringlengths 118 6.63k |
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### Question:
ConceptsBySearch extends ConceptAction { @Override Concepts get() throws ObservationController.LoadObservationException { return controller.searchObservationsGroupedByConcepts(term, patientUuid); } ConceptsBySearch(ConceptController conceptController, ObservationController controller, String patientUuid, ... |
### Question:
EntityUtils { @SuppressWarnings({ "unchecked", "rawtypes" }) public static Class<? extends Serializable> primaryKeyClass(Class<?> entityClass) { if (entityClass.isAnnotationPresent(IdClass.class)) { return entityClass.getAnnotation(IdClass.class).value(); } Class clazz = PersistenceUnitDescriptorProvider.... |
### Question:
EntityRepositoryHandler implements EntityRepository<E, PK>, DelegateQueryHandler { @Override public E findBy(PK primaryKey) { Query query = context.getMethod().getAnnotation(Query.class); if (query != null && query.hints().length > 0) { Map<String, Object> hints = new HashMap<String, Object>(); for (Query... |
### Question:
EntityRepositoryHandler implements EntityRepository<E, PK>, DelegateQueryHandler { @Override public Optional<E> findOptionalBy(PK primaryKey) { E found = null; try { found = findBy(primaryKey); } catch (Exception e) { } return Optional.ofNullable(found); } @Override @RequiresTransaction E save(E entity);... |
### Question:
EntityRepositoryHandler implements EntityRepository<E, PK>, DelegateQueryHandler { @SuppressWarnings("unchecked") @Override public List<E> findAll() { return context.applyRestrictions(entityManager().createQuery(allQuery(), entityClass())).getResultList(); } @Override @RequiresTransaction E save(E entity... |
### Question:
EntityRepositoryHandler implements EntityRepository<E, PK>, DelegateQueryHandler { @Override public List<E> findByLike(E example, SingularAttribute<E, ?>... attributes) { return findByLike(example, -1, -1, attributes); } @Override @RequiresTransaction E save(E entity); @Override @RequiresTransaction E sa... |
### Question:
EntityRepositoryHandler implements EntityRepository<E, PK>, DelegateQueryHandler { @Override public Long count() { return (Long) context.applyRestrictions(entityManager().createQuery(countQuery(), Long.class)) .getSingleResult(); } @Override @RequiresTransaction E save(E entity); @Override @RequiresTrans... |
### Question:
EntityRepositoryHandler implements EntityRepository<E, PK>, DelegateQueryHandler { @Override public Long countLike(E example, SingularAttribute<E, ?>... attributes) { return executeCountQuery(example, true, attributes); } @Override @RequiresTransaction E save(E entity); @Override @RequiresTransaction E s... |
### Question:
EntityRepositoryHandler implements EntityRepository<E, PK>, DelegateQueryHandler { @Override @RequiresTransaction public void removeAndFlush(E entity) { entityManager().remove(entity); flush(); } @Override @RequiresTransaction E save(E entity); @Override @RequiresTransaction E saveAndFlush(E entity); @Ov... |
### Question:
EntityRepositoryHandler implements EntityRepository<E, PK>, DelegateQueryHandler { @SuppressWarnings("unchecked") @Override public PK getPrimaryKey(E entity) { return (PK) persistenceUnitUtil().getIdentifier(entity); } @Override @RequiresTransaction E save(E entity); @Override @RequiresTransaction E save... |
### Question:
AuditEntityListener { @PrePersist public void persist(Object entity) { BeanManager beanManager = BeanManagerProvider.getInstance().getBeanManager(); Set<Bean<?>> beans = beanManager.getBeans(PrePersistAuditListener.class); for (Bean<?> bean : beans) { PrePersistAuditListener result = (PrePersistAuditListe... |
### Question:
EntityUtils { public static boolean isEntityClass(Class<?> entityClass) { return entityClass.isAnnotationPresent(Entity.class) || PersistenceUnitDescriptorProvider.getInstance().isEntity(entityClass); } private EntityUtils(); @SuppressWarnings({ "unchecked", "rawtypes" }) static Class<? extends Serializa... |
### Question:
PrincipalProvider extends AuditProvider { @Override public void prePersist(Object entity) { updatePrincipal(entity, true); } @Override void prePersist(Object entity); @Override void preUpdate(Object entity); }### Answer:
@Test public void should_set_users_for_creation() { String creator = "creator"; Moc... |
### Question:
PrincipalProvider extends AuditProvider { @Override public void preUpdate(Object entity) { updatePrincipal(entity, false); } @Override void prePersist(Object entity); @Override void preUpdate(Object entity); }### Answer:
@Test public void should_set_users_for_update() { String changer = "changer"; MockP... |
### Question:
TimestampsProvider extends AuditProvider { @Override public void prePersist(Object entity) { updateTimestamps(entity, true); } @Override void prePersist(Object entity); @Override void preUpdate(Object entity); }### Answer:
@Test public void should_set_dates_for_creation() { AuditedEntity entity = new Au... |
### Question:
TimestampsProvider extends AuditProvider { @Override public void preUpdate(Object entity) { updateTimestamps(entity, false); } @Override void prePersist(Object entity); @Override void preUpdate(Object entity); }### Answer:
@Test public void should_set_dates_for_update() { AuditedEntity entity = new Audi... |
### Question:
QueryRoot extends QueryPart { public static QueryRoot create(String method, RepositoryMetadata repo, RepositoryMethodPrefix prefix) { QueryRoot root = new QueryRoot(repo.getEntityMetadata().getEntityName(), prefix); root.build(method, method, repo); root.createJpql(); return root; } protected QueryRoot(S... |
### Question:
ClassUtils { public static Method extractPossiblyGenericMethod(Class<?> clazz, Method sourceMethod) { Method exactMethod = extractMethod(clazz, sourceMethod); if (exactMethod == null) { String methodName = sourceMethod.getName(); Class<?>[] parameterTypes = sourceMethod.getParameterTypes(); for (Method me... |
### Question:
QueryStringExtractorFactory { public String extract(final Query query) { for (final QueryStringExtractor extractor : extractors) { final String compare = extractor.getClass().getAnnotation(ProviderSpecific.class).value(); final Object implQuery = toImplQuery(compare, query); if (implQuery != null) { retur... |
### Question:
ParameterUtil { public static String getName(Method method, int parameterIndex) { if (!isParameterSupported() || method == null) { return null; } try { Object[] parameters = (Object[]) getParametersMethod.invoke(method); return (String) getNameMethod.invoke(parameters[parameterIndex]); } catch (IllegalAcc... |
### Question:
PropertyFileUtils { public static Enumeration<URL> resolvePropertyFiles(String propertyFileName) throws IOException { if (propertyFileName != null && (propertyFileName.contains(": { Vector<URL> propertyFileUrls = new Vector<URL>(); URL url = new URL(propertyFileName); if (propertyFileName.startsWith("file... |
### Question:
EntityRepositoryHandler implements EntityRepository<E, PK>, DelegateQueryHandler { @Override @RequiresTransaction public E save(E entity) { if (context.isNew(entity)) { entityManager().persist(entity); return entity; } return entityManager().merge(entity); } @Override @RequiresTransaction E save(E entity... |
### Question:
EntityRepositoryHandler implements EntityRepository<E, PK>, DelegateQueryHandler { @Override @RequiresTransaction public E saveAndFlush(E entity) { E result = save(entity); flush(); return result; } @Override @RequiresTransaction E save(E entity); @Override @RequiresTransaction E saveAndFlush(E entity); ... |
### Question:
EntityRepositoryHandler implements EntityRepository<E, PK>, DelegateQueryHandler { @Override @RequiresTransaction public void refresh(E entity) { entityManager().refresh(entity); } @Override @RequiresTransaction E save(E entity); @Override @RequiresTransaction E saveAndFlush(E entity); @Override @Require... |
### Question:
PluginRegisterService { public CompletableFuture<Response> register(Long userId, PluginReqisterQuery pluginReqisterQuery, PluginUpdate pluginUpdate, String authorization) { validateSubscription(pluginReqisterQuery); checkAuthServiceAvailable(); return persistPlugin(pluginUpdate, pluginReqisterQuery.constr... |
### Question:
FormController implements FxmlController { protected List<FormFieldController> findInvalidFields() { return subscribedFields.values().stream().filter(not(FormFieldController::isValid)).collect(Collectors.toList()); } void subscribeToField(FormFieldController formField); void unsubscribeToField(FormFieldC... |
### Question:
Stages { public static CompletionStage<Stage> stageOf(final String title, final Pane rootPane) { return FxAsync.computeOnFxThread( Tuple.of(title, rootPane), titleAndPane -> { final Stage stage = new Stage(StageStyle.DECORATED); stage.setTitle(title); stage.setScene(new Scene(rootPane)); return stage; } )... |
### Question:
Stages { public static CompletionStage<Stage> scheduleDisplaying(final Stage stage) { LOG.debug( "Requested displaying of stage {} with title : \"{}\"", stage, stage.getTitle() ); return FxAsync.doOnFxThread( stage, Stage::show ); } private Stages(); static CompletionStage<Stage> stageOf(final String tit... |
### Question:
Stages { public static CompletionStage<Stage> scheduleHiding(final Stage stage) { LOG.debug( "Requested hiding of stage {} with title : \"{}\"", stage, stage.getTitle() ); return FxAsync.doOnFxThread( stage, Stage::hide ); } private Stages(); static CompletionStage<Stage> stageOf(final String title, fina... |
### Question:
Stages { public static CompletionStage<Stage> setStylesheet(final Stage stage, final String stylesheet) { LOG.info( "Setting stylesheet {} for stage {}({})", stylesheet, stage.toString(), stage.getTitle() ); return FxAsync.doOnFxThread( stage, theStage -> { final Scene stageScene = theStage.getScene(); st... |
### Question:
Panes { public static <T extends Pane> CompletionStage<T> setContent(final T parent, final Node content) { return FxAsync.doOnFxThread(parent, parentNode -> { parentNode.getChildren().clear(); parentNode.getChildren().add(content); }); } private Panes(); static CompletionStage<T> setContent(final T paren... |
### Question:
Properties { public static <T, P extends ObservableValue<T>> P newPropertyWithCallback(Supplier<P> propertyFactory, Consumer<T> callback) { final P property = propertyFactory.get(); whenPropertyIsSet(property, callback); return property; } private Properties(); static P newPropertyWithCallback(Supplier<P... |
### Question:
Properties { public static <T, P extends ObservableValue<T>> void whenPropertyIsSet(P property, Consumer<T> doWhenSet) { whenPropertyIsSet(property, () -> doWhenSet.accept(property.getValue())); } private Properties(); static P newPropertyWithCallback(Supplier<P> propertyFactory, Consumer<T> callback); s... |
### Question:
FormFieldController implements FxmlController { public boolean validate(F fieldValue) { return true; } abstract String getFieldName(); abstract F getFieldValue(); boolean validate(F fieldValue); boolean isValid(); void onValid(); void onInvalid(String reason); }### Answer:
@Test public void defaultValid... |
### Question:
Resources { public static Try<Path> getResourcePath(final String resourceRelativePath) { return Try.of(() -> new ClassPathResource(resourceRelativePath)) .filter(ClassPathResource::exists) .map(ClassPathResource::getPath) .map(Paths::get); } private Resources(); static Try<Path> getResourcePath(final Str... |
### Question:
Resources { public static Try<URL> getResourceURL(final String resourceRelativePath) { return Try.of(() -> new ClassPathResource(resourceRelativePath)) .mapTry(ClassPathResource::getURL); } private Resources(); static Try<Path> getResourcePath(final String resourceRelativePath); static Try<URL> getResour... |
### Question:
ExceptionHandler { public Pane asPane() { return this.asPane(this.exception.getMessage()); } ExceptionHandler(final Throwable exception); Pane asPane(); Pane asPane(final String userReadableError); static Pane fromThrowable(final Throwable throwable); static CompletionStage<Stage> displayExceptionPane(
... |
### Question:
ExceptionHandler { public static CompletionStage<Stage> displayExceptionPane( final String title, final String readable, final Throwable exception ) { final Pane exceptionPane = new ExceptionHandler(exception).asPane(readable); final CompletionStage<Stage> exceptionStage = Stages.stageOf(title, exceptionP... |
### Question:
ComponentListCell extends ListCell<T> { @Override protected void updateItem(final T item, final boolean empty) { super.updateItem(item, empty); if (item == null || empty) { setGraphic(null); setVisible(false); setManaged(false); } else { setVisible(true); setManaged(true); } Platform.runLater(() -> { cell... |
### Question:
BrowserSupport { public Try<Void> openUrl(final String url) { return Try.run(() -> hostServices.showDocument(url)) .onFailure(cause -> onException(cause, url)); } @Autowired BrowserSupport(HostServices hostServices); Try<Void> openUrl(final String url); Try<Void> openUrl(final URL url); }### Answer:
@Te... |
### Question:
StringFormFieldController extends FormFieldController<String> { @Override public void initialize() { validateValueOnChange(); } @Override void initialize(); abstract ObservableValue<String> getObservableValue(); @Override String getFieldValue(); }### Answer:
@Test public void validatesOnEveryPropertyCha... |
### Question:
FxmlLoadResult implements Tuple { public Try<NODE> getNode() { return node; } FxmlLoadResult(Try<NODE> node, Try<CONTROLLER> controller); FxmlLoadResult<NODE, CONTROLLER> afterNodeLoaded(final Consumer<NODE> onNodeLoaded); FxmlLoadResult<NODE, CONTROLLER> afterControllerLoaded(final Consumer<CONTROLLER> o... |
### Question:
FxmlLoadResult implements Tuple { public Try<Pane> orExceptionPane() { return ((Try<Pane>) getNode()).recover(ExceptionHandler::fromThrowable); } FxmlLoadResult(Try<NODE> node, Try<CONTROLLER> controller); FxmlLoadResult<NODE, CONTROLLER> afterNodeLoaded(final Consumer<NODE> onNodeLoaded); FxmlLoadResult<... |
### Question:
FxmlLoadResult implements Tuple { public Try<CONTROLLER> getController() { return controller; } FxmlLoadResult(Try<NODE> node, Try<CONTROLLER> controller); FxmlLoadResult<NODE, CONTROLLER> afterNodeLoaded(final Consumer<NODE> onNodeLoaded); FxmlLoadResult<NODE, CONTROLLER> afterControllerLoaded(final Cons... |
### Question:
FxmlLoadResult implements Tuple { @Override public int arity() { return 2; } FxmlLoadResult(Try<NODE> node, Try<CONTROLLER> controller); FxmlLoadResult<NODE, CONTROLLER> afterNodeLoaded(final Consumer<NODE> onNodeLoaded); FxmlLoadResult<NODE, CONTROLLER> afterControllerLoaded(final Consumer<CONTROLLER> on... |
### Question:
FxmlLoadResult implements Tuple { @Override public Seq<?> toSeq() { return List.of(node, controller); } FxmlLoadResult(Try<NODE> node, Try<CONTROLLER> controller); FxmlLoadResult<NODE, CONTROLLER> afterNodeLoaded(final Consumer<NODE> onNodeLoaded); FxmlLoadResult<NODE, CONTROLLER> afterControllerLoaded(fi... |
### Question:
FxmlLoader extends FXMLLoader { public void onSuccess(final Node loadResult) { this.onSuccess.accept(loadResult); } @Autowired FxmlLoader(ApplicationContext context); void setOnSuccess(final Consumer<Node> onSuccess); void onSuccess(final Node loadResult); void setOnFailure(final Consumer<Throwable> onFa... |
### Question:
FxmlLoader extends FXMLLoader { public void onFailure(final Throwable cause) { this.onFailure.accept(cause); } @Autowired FxmlLoader(ApplicationContext context); void setOnSuccess(final Consumer<Node> onSuccess); void onSuccess(final Node loadResult); void setOnFailure(final Consumer<Throwable> onFailure... |
### Question:
DefaultEasyFxml implements EasyFxml { @Override public FxmlLoadResult<Pane, FxmlController> load(final FxmlComponent component) { return this.load(component, Pane.class, FxmlController.class); } @Autowired protected DefaultEasyFxml(
final ApplicationContext context,
final ControllerManage... |
### Question:
StringFormFieldController extends FormFieldController<String> { protected boolean isNullOrBlank() { final String fieldValue = getFieldValue(); return fieldValue == null || fieldValue.isBlank(); } @Override void initialize(); abstract ObservableValue<String> getObservableValue(); @Override String getField... |
### Question:
AbstractInstanceManager { public V registerSingle(final K parent, final V instance) { return this.singletons.put(parent, instance); } V registerSingle(final K parent, final V instance); V registerMultiple(
final K parent,
final Selector selector,
final V instance
); Option<V> ... |
### Question:
AbstractInstanceManager { public V registerMultiple( final K parent, final Selector selector, final V instance ) { if (!this.prototypes.containsKey(parent)) { this.prototypes.put(parent, new ConcurrentHashMap<>()); } return this.prototypes.get(parent).put(selector, instance); } V registerSingle(final K p... |
### Question:
AbstractInstanceManager { public List<V> getAll(final K parent) { final List<V> all = this.getMultiples(parent); this.getSingle(parent).peek(all::add); return all; } V registerSingle(final K parent, final V instance); V registerMultiple(
final K parent,
final Selector selector,
fi... |
### Question:
AbstractInstanceManager { public List<V> getMultiples(final K parent) { return new ArrayList<>(Option.of(this.prototypes.get(parent)) .map(Map::values) .getOrElse(Collections.emptyList())); } V registerSingle(final K parent, final V instance); V registerMultiple(
final K parent,
final Sel... |
### Question:
FxApplication extends Application { @Override public void start(final Stage primaryStage) { this.springContext.getBean(FxUiManager.class).startGui(primaryStage); } @Override void init(); @Override void start(final Stage primaryStage); @Override void stop(); }### Answer:
@Test public void start() throws ... |
### Question:
FxUiManager { public void startGui(final Stage mainStage) { try { onStageCreated(mainStage); final Scene mainScene = getScene(mainComponent()); onSceneCreated(mainScene); mainStage.setScene(mainScene); mainStage.setTitle(title()); Option.ofOptional(getStylesheet()) .filter(style -> !FxmlStylesheets.DEFAUL... |
### Question:
FxAsync { public static <T> CompletionStage<T> doOnFxThread(final T element, final Consumer<T> action) { return CompletableFuture.supplyAsync(() -> { action.accept(element); return element; }, Platform::runLater); } private FxAsync(); static CompletionStage<T> doOnFxThread(final T element, final Consumer... |
### Question:
FxAsync { public static <T, U> CompletionStage<U> computeOnFxThread(final T element, final Function<T, U> compute) { return CompletableFuture.supplyAsync(() -> compute.apply(element), Platform::runLater); } private FxAsync(); static CompletionStage<T> doOnFxThread(final T element, final Consumer<T> actio... |
### Question:
Buttons { public static void setOnClick(final Button button, final Runnable action) { button.setOnAction(e -> Platform.runLater(action)); } private Buttons(); static void setOnClick(final Button button, final Runnable action); static void setOnClickWithNode(final Button button, final Node node, final Con... |
### Question:
Buttons { public static void setOnClickWithNode(final Button button, final Node node, final Consumer<Node> action) { setOnClick(button, () -> action.accept(node)); } private Buttons(); static void setOnClick(final Button button, final Runnable action); static void setOnClickWithNode(final Button button, ... |
### Question:
Nodes { public static void centerNode(final Node node, final Double marginSize) { AnchorPane.setTopAnchor(node, marginSize); AnchorPane.setBottomAnchor(node, marginSize); AnchorPane.setLeftAnchor(node, marginSize); AnchorPane.setRightAnchor(node, marginSize); } private Nodes(); static void centerNode(fin... |
### Question:
Nodes { public static void hideAndResizeParentIf( final Node node, final ObservableValue<? extends Boolean> condition ) { autoresizeContainerOn(node, condition); bindContentBiasCalculationTo(node, condition); } private Nodes(); static void centerNode(final Node node, final Double marginSize); static void... |
### Question:
JenkinsLinterErrorBuilder { public JenkinsLinterError build(String line) { if (line==null){ return null; } Matcher matcher = ERROR_PATTERN.matcher(line); if (! matcher.find()){ return null; } JenkinsLinterError error = new JenkinsLinterError(); error.message=line; error.line = Integer.valueOf(matcher.grou... |
### Question:
AbstractJenkinsCLICommand implements JenkinsCLICommand<T, P> { protected String[] createCommands(JenkinsCLIConfiguration configuration, P parameter, boolean hidePasswords) { return createExecutionStrings(configuration, hidePasswords); } final T execute(JenkinsCLIConfiguration configuration, P parameter);... |
### Question:
JenkinsDefaultURLProvider { public String getDefaultJenkinsURL() { String jenkinsURL = getJENKINS_URL(); if (jenkinsURL != null && jenkinsURL.trim().length() > 0) { return jenkinsURL; } return getLocalhostURL(); } String getDefaultJenkinsURL(); String createDefaultURLDescription(); }### Answer:
@Test pu... |
### Question:
JenkinsDefaultURLProvider { public String createDefaultURLDescription() { String jenkinsURL = getJENKINS_URL(); if (jenkinsURL != null) { return "JENKINS_URL defined as " + jenkinsURL + ". Using this as default value"; } return "No JENKINS_URL env defined, so using " + getLocalhostURL() + " as default val... |
### Question:
JenkinsWordCompletion extends AbstractWordCodeCompletition { @Override public Set<ProposalProvider> calculate(String source, int offset) { if (source.trim().length()==0){ return Collections.singleton(new JenkinsDSLTypeProposalProvider(JenkinsDefaultClosureKeyWords.PIPELINE)); } String parentAsText = ""; J... |
### Question:
SystemPropertyListBuilder { public String build(String type, String key, String value){ StringBuilder sb = new StringBuilder(); sb.append("-D"); sb.append(type); sb.append('.'); sb.append(key); sb.append('='); sb.append(value); return sb.toString(); } String build(String type, String key, String value); ... |
### Question:
SeasonAnalyticsJdbcDao extends JdbcDaoSupport implements SeasonAnalyticsDao { @Override public SeasonAnalytics fetchByYear(Integer year) { SeasonAnalytics ret = null; String sql = "SELECT * FROM " + TABLE_NAME + " WHERE year = ?"; Object[] args = { year }; List<SeasonAnalytics> results = getJdbcTemplate()... |
### Question:
SeasonDataJdbcDao extends JdbcDaoSupport implements SeasonDataDao { @Override public List<SeasonData> fetchAllByYear(Integer year) { List<SeasonData> ret = null; String sql = "SELECT t.* FROM " + TABLE_NAME + " t WHERE t.year = ?"; Object[] args = { year }; ret = getJdbcTemplate().query(sql, args, new Sea... |
### Question:
SeasonDataJdbcDao extends JdbcDaoSupport implements SeasonDataDao { @Override public SeasonData fetchByYearAndTeamName(Integer year, String teamName) { SeasonData ret = null; String sql = "SELECT t.* FROM " + TABLE_NAME + " t WHERE t.year = ? AND t.team_name = ?"; Object[] args = { year, teamName }; List<... |
### Question:
TournamentAnalyticsJdbcDao extends JdbcDaoSupport implements TournamentAnalyticsDao { @Override public TournamentAnalytics fetchByYear(Integer year) { TournamentAnalytics ret = null; String sql = "SELECT * FROM " + TABLE_NAME + " WHERE year = ?"; Object[] args = { year }; List<TournamentAnalytics> results... |
### Question:
TournamentResultJdbcDao extends JdbcDaoSupport implements TournamentResultDao { @Override public List<TournamentResult> fetchAllByYear(Integer year) { String sql = "SELECT t.* FROM " + TABLE_NAME + " t WHERE t.year = ? ORDER BY t.game_date"; Object[] args = { year }; List<TournamentResult> results = getJd... |
### Question:
MlpNetworkTrainer implements LearningEventListener { protected static Integer[] computeYearsToTrain(String[] args) { Integer[] ret = new Integer[args.length - 1]; for (int aa = 0; aa < args.length - 1; aa++) { Integer year = Integer.valueOf(args[aa]); NetworkUtils.validateYear(year); ret[aa] = year; } ret... |
### Question:
MlpNetworkTrainer implements LearningEventListener { protected static Integer[] computeYearsToSimulate(String[] args) { Integer[] ret = null; String yearsToSimulate = args[args.length - 1]; StringTokenizer strtok = new StringTokenizer(yearsToSimulate, ","); List<Integer> yts = new ArrayList<>(); while (st... |
### Question:
HttpResponseParser { static String parseCreatedIndexResponse(HttpEntity entity) { return JsonHandler.readValue(entity).get(Field.INDEX); } }### Answer:
@Test public void parseCreatedIndexResponseTest() { String path = "/responses/create-index.json"; String index = HttpResponseParser.parseCreatedIndexRe... |
### Question:
GrscicollInterpreter { @VisibleForTesting static OccurrenceIssue getInstitutionMatchNoneIssue(Status status) { if (status == Status.AMBIGUOUS || status == Status.AMBIGUOUS_MACHINE_TAGS) { return OccurrenceIssue.AMBIGUOUS_INSTITUTION; } if (status == Status.AMBIGUOUS_OWNER) { return OccurrenceIssue.POSSIBL... |
### Question:
GrscicollInterpreter { @VisibleForTesting static OccurrenceIssue getCollectionMatchNoneIssue(Status status) { if (status == Status.AMBIGUOUS || status == Status.AMBIGUOUS_MACHINE_TAGS) { return OccurrenceIssue.AMBIGUOUS_COLLECTION; } if (status == Status.AMBIGUOUS_INSTITUTION_MISMATCH) { return Occurrence... |
### Question:
EsClient implements AutoCloseable { public static EsClient from(EsConfig config) { return new EsClient(config); } private EsClient(EsConfig config); static EsClient from(EsConfig config); Response performGetRequest(String endpoint); Response performPutRequest(String endpoint, Map<String, String> params, ... |
### Question:
TaxonomyInterpreter { @VisibleForTesting protected static boolean checkFuzzy(NameUsageMatch usageMatch, SpeciesMatchRequest matchRequest) { boolean isFuzzy = MatchType.FUZZY == usageMatch.getDiagnostics().getMatchType(); boolean isEmptyTaxa = Strings.isNullOrEmpty(matchRequest.getKingdom()) && Strings.isN... |
### Question:
EsConfig { public static EsConfig from(String... hostsAddresses) { return new EsConfig(hostsAddresses); } private EsConfig(@NonNull String[] hostsAddresses); static EsConfig from(String... hostsAddresses); List<URL> getHosts(); String[] getRawHosts(); }### Answer:
@Test(expected = NullPointerException.c... |
### Question:
OccurrenceHdfsRecordConverter { private static BiConsumer<OccurrenceHdfsRecord, SpecificRecordBase> multimediaMapper() { return (hr, sr) -> { MultimediaRecord mr = (MultimediaRecord) sr; List<String> mediaTypes = mr.getMultimediaItems().stream() .filter(i -> !Strings.isNullOrEmpty(i.getType())) .map(Multi... |
### Question:
OccurrenceHdfsRecordConverter { private static BiConsumer<OccurrenceHdfsRecord, SpecificRecordBase> temporalMapper() { return (hr, sr) -> { TemporalRecord tr = (TemporalRecord) sr; Optional.ofNullable(tr.getDateIdentified()) .map(STRING_TO_DATE) .ifPresent(date -> hr.setDateidentified(date.getTime())); Op... |
### Question:
OccurrenceHdfsRecordConverter { private static BiConsumer<OccurrenceHdfsRecord, SpecificRecordBase> metadataMapper() { return (hr, sr) -> { MetadataRecord mr = (MetadataRecord) sr; hr.setCrawlid(mr.getCrawlId()); hr.setDatasetkey(mr.getDatasetKey()); hr.setDatasetname(mr.getDatasetTitle()); hr.setInstalla... |
### Question:
OccurrenceHdfsRecordConverter { public static OccurrenceHdfsRecord toOccurrenceHdfsRecord(SpecificRecordBase... records) { OccurrenceHdfsRecord occurrenceHdfsRecord = new OccurrenceHdfsRecord(); occurrenceHdfsRecord.setIssue(new ArrayList<>()); for (SpecificRecordBase record : records) { Optional.ofNullab... |
### Question:
OccurrenceHdfsRecordConverter { private static BiConsumer<OccurrenceHdfsRecord, SpecificRecordBase> grscicollMapper() { return (hr, sr) -> { GrscicollRecord gr = (GrscicollRecord) sr; if (gr.getInstitutionMatch() != null) { Institution institution = gr.getInstitutionMatch().getInstitution(); if (instituti... |
### Question:
JsonConverter { @Override public String toString() { return toJson().toString(); } ObjectNode toJson(); @Override String toString(); }### Answer:
@Test public void createSimpleJsonFromSpecificRecordBase() { ExtendedRecord extendedRecord = ExtendedRecord.newBuilder().setId("777").setCoreRowType("core").b... |
### Question:
DwcaToAvroConverter extends ConverterToVerbatim { @Override protected long convert(Path inputPath, SyncDataFileWriter<ExtendedRecord> dataFileWriter) throws IOException { DwcaReader reader = DwcaReader.fromLocation(inputPath.toString()); log.info("Exporting the DwC Archive to Avro started {}", inputPath);... |
### Question:
OccurrenceExtensionConverter { public static Optional<ExtendedRecord> convert( Map<String, String> coreMap, Map<String, String> extMap) { String id = extMap.get(DwcTerm.occurrenceID.qualifiedName()); if (!Strings.isNullOrEmpty(id)) { ExtendedRecord extendedRecord = ExtendedRecord.newBuilder().setId(id).bu... |
### Question:
AvroReader { public static <T extends Record> Map<String, T> readRecords( String hdfsSiteConfig, String coreSiteConfig, Class<T> clazz, String path) { FileSystem fs = FsUtils.getFileSystem(hdfsSiteConfig, coreSiteConfig, path); List<Path> paths = parseWildcardPath(fs, path); return readRecords(fs, clazz, ... |
### Question:
TemporalParser implements Serializable { protected static boolean isValidDate(TemporalAccessor temporalAccessor) { LocalDate upperBound = LocalDate.now().plusDays(1); return isValidDate(temporalAccessor, Range.closed(MIN_LOCAL_DATE, upperBound)); } private TemporalParser(List<DateComponentOrdering> order... |
### Question:
XmlToAvroConverter extends ConverterToVerbatim { @Override public long convert(Path inputPath, SyncDataFileWriter<ExtendedRecord> dataFileWriter) { return ExtendedRecordConverter.create(executor).toAvro(inputPath.toString(), dataFileWriter); } XmlToAvroConverter executor(ExecutorService executor); XmlToA... |
### Question:
WikidataValidator implements IdentifierSchemeValidator { @Override public boolean isValid(String value) { if (Strings.isNullOrEmpty(value)) { return false; } Matcher matcher = WIKIDATA_PATTERN.matcher(value); return matcher.matches(); } @Override boolean isValid(String value); @Override String normalize(... |
### Question:
WikidataValidator implements IdentifierSchemeValidator { @Override public String normalize(String value) { Preconditions.checkNotNull(value, "Identifier value can't be null"); String trimmedValue = value.trim(); Matcher matcher = WIKIDATA_PATTERN.matcher(trimmedValue); if (matcher.matches()) { return valu... |
### Question:
AgentIdentifierParser { public static Set<AgentIdentifier> parse(String raw) { if (Strings.isNullOrEmpty(raw)) { return Collections.emptySet(); } return Stream.of(raw.split(DELIMITER)) .map(String::trim) .map(AgentIdentifierParser::parseValue) .collect(Collectors.toSet()); } static Set<AgentIdentifier> p... |
### Question:
XmlSanitizingReader extends FilterReader { @Override public boolean ready() throws IOException { return (!endOfStreamReached && in.ready()); } XmlSanitizingReader(Reader in); @Override synchronized int read(); @Override synchronized int read(char[] buffer, int offset, int length); @Override boolean ready(... |
### Question:
HashUtils { public static String getSha1(String... strings) { return getHash("SHA-1", strings); } static String getSha1(String... strings); }### Answer:
@Test public void sha1Test() { String value = "af91c6ca-da34-4e49-ace3-3b125dbeab3c"; String expected = "3521a4e173f1c42a18d431d128720dc60e430a73"; Str... |
### Question:
TemporalUtils { public static Optional<Temporal> getTemporal(Integer year, Integer month, Integer day) { try { if (year != null && month != null && day != null) { return Optional.of(LocalDate.of(year, month, day)); } if (year != null && month != null) { return Optional.of(YearMonth.of(year, month)); } if ... |
### Question:
PropertyPrioritizer { protected static String findHighestPriority(Set<PrioritizedProperty> props) { return props.stream() .min( Comparator.comparing(PrioritizedProperty::getPriority) .thenComparing(PrioritizedProperty::getProperty)) .map(PrioritizedProperty::getProperty) .orElse(null); } abstract void re... |
### Question:
IngestMetricsBuilder { public static IngestMetrics createInterpretedToEsIndexMetrics() { return IngestMetrics.create().addMetric(GbifJsonTransform.class, AVRO_TO_JSON_COUNT); } static IngestMetrics createVerbatimToInterpretedMetrics(); static IngestMetrics createInterpretedToEsIndexMetrics(); static Inge... |
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