source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151130062219_create_question_items.rb | Ruby | mit | 19 | develop | 270 | class CreateQuestionItems < ActiveRecord::Migration[4.2]
def change
create_table :question_items do |t|
t.string :label
t.string :literal
t.references :instruction, index: true, foreign_key: true
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20170517153047_create_item_groups.rb | Ruby | mit | 19 | develop | 267 | class CreateItemGroups < ActiveRecord::Migration[5.0]
def change
create_table :item_groups do |t|
t.integer :group_type
t.string :item_type
t.string :label
t.references :root_item, polymorphic: true
t.timestamps
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20240425130950_update_functions_for_construct_ddi_slug.rb | Ruby | mit | 19 | develop | 16,781 | class UpdateFunctionsForConstructDdiSlug < ActiveRecord::Migration[6.1]
def change
reversible do |dir|
dir.up do
execute <<~SQL
--
-- Name: update_cc_condition(); Type: FUNCTION; Schema: public; Owner: -
--
CREATE OR REPLACE FUNCTION public.update_cc_conditio... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20170605112157_create_construct_views.rb | Ruby | mit | 19 | develop | 33,738 | class CreateConstructViews < ActiveRecord::Migration[5.0]
def change
reversible do |dir|
dir.up do
execute <<~SQL
ALTER TABLE cc_conditions RENAME TO conditions;
ALTER SEQUENCE cc_conditions_id_seq RENAME TO conditions_id_seq;
ALTER TABLE cc_loops RENAME TO loops;
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151206205100_create_instruments_datasets.rb | Ruby | mit | 19 | develop | 321 | class CreateInstrumentsDatasets < ActiveRecord::Migration[4.2]
def change
create_table :instruments_datasets do |t|
t.references :instrument, index: true, foreign_key: true, null: false
t.references :dataset, index: true, foreign_key: true, null: false
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151201095143_create_cc_loops.rb | Ruby | mit | 19 | develop | 250 | class CreateCcLoops < ActiveRecord::Migration[4.2]
def change
create_table :cc_loops do |t|
t.string :loop_var
t.string :start_val
t.string :end_val
t.string :loop_while
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20170601154431_create_view_of_control_constructs_with_topic.rb | Ruby | mit | 19 | develop | 571 | class CreateViewOfControlConstructsWithTopic < ActiveRecord::Migration[5.0]
def change
reversible do |dir|
dir.up do
execute <<~SQL
CREATE VIEW cc_links AS (
SELECT cc.*, l.topic_id
FROM control_constructs AS cc
LEFT OUTER JOIN links AS l
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151206165603_create_variables.rb | Ruby | mit | 19 | develop | 379 | class CreateVariables < ActiveRecord::Migration[4.2]
def change
create_table :variables do |t|
t.string :name, null: false
t.string :label
t.string :var_type, null: false
t.references :dataset, index: true, foreign_key: true, null: false
t.timestamps null: false
end
add_inde... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20160603113436_add_confirmable_and_lockable.rb | Ruby | mit | 19 | develop | 552 | class AddConfirmableAndLockable < ActiveRecord::Migration[4.2]
def change
add_column :users, :confirmation_token, :string
add_column :users, :confirmed_at, :datetime
add_column :users, :confirmation_sent_at, :datetime
add_column :users, :unconfirmed_email, :string
add_column :users, :failed_attem... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20160413100019_devise_create_users.rb | Ruby | mit | 19 | develop | 1,538 | class DeviseCreateUsers < ActiveRecord::Migration[4.2]
def change
create_table(:users) do |t|
## Database authenticatable
t.string :email, null: false, default: ""
t.string :encrypted_password, null: false, default: ""
## Recoverable
t.string :reset_password_token
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151129204903_create_codes.rb | Ruby | mit | 19 | develop | 311 | class CreateCodes < ActiveRecord::Migration[4.2]
def change
create_table :codes do |t|
t.string :value
t.integer :order
t.references :code_list, index: true, foreign_key: true
t.references :catagory, index: true, foreign_key: true
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20190829124508_create_imports.rb | Ruby | mit | 19 | develop | 298 | class CreateImports < ActiveRecord::Migration[5.0]
def change
create_table :imports do |t|
t.references :document, foreign_key: true
t.string :import_type
t.references :dataset, foreign_key: true
t.string :state
t.text :log
t.timestamps
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20160805093216_defer_all_constraints.rb | Ruby | mit | 19 | develop | 4,966 | class DeferAllConstraints < ActiveRecord::Migration[5.0]
def change
reversible do |dir|
dir.up do
execute <<-SQL
ALTER TABLE cc_questions
DROP CONSTRAINT encapsulate_cc_questions_and_response_units;
ALTER TABLE codes
DROP CONSTRAINT encapsulate_codes_and_cate... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151130142555_create_response_domain_numerics.rb | Ruby | mit | 19 | develop | 272 | class CreateResponseDomainNumerics < ActiveRecord::Migration[4.2]
def change
create_table :response_domain_numerics do |t|
t.string :numeric_type
t.string :label
t.decimal :min
t.decimal :max
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151206185659_create_links.rb | Ruby | mit | 19 | develop | 430 | class CreateLinks < ActiveRecord::Migration[4.2]
def change
create_table :links do |t|
t.references :target, polymorphic: true, index: true, null: false
t.references :topic, index: true, foreign_key: true, null: false
t.integer :x
t.integer :y
t.timestamps null: false
end
ad... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20240207154741_add_slugs.rb | Ruby | mit | 19 | develop | 1,235 | class AddSlugs < ActiveRecord::Migration[6.1]
def up
# Tables to update, including :instruments
tables = [:categories, :code_lists, :codes, :control_constructs, :identifiers, :instructions, :question_items, :question_grids, :instruments]
# Add ddi_slug columns and indexes
tables.each do |table|
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151130062608_create_question_grids.rb | Ruby | mit | 19 | develop | 785 | class CreateQuestionGrids < ActiveRecord::Migration[4.2]
def change
create_table :question_grids do |t|
t.string :label
t.string :literal
t.references :instruction, index: true, foreign_key: true
t.integer :vertical_code_list_id, index: true
t.integer :horizontal_code_list_id, index:... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20160930113839_create_documents.rb | Ruby | mit | 19 | develop | 353 | class CreateDocuments < ActiveRecord::Migration[5.0]
def change
create_table :documents do |t|
t.string :filename
t.string :content_type
t.binary :file_contents
t.string :md5_hash, limit: 32
t.references :item, polymorphic: true
t.timestamps
end
add_index :documents, :... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20240208160611_add_slugs_for_constructs.rb | Ruby | mit | 19 | develop | 43,964 | class AddSlugsForConstructs < ActiveRecord::Migration[6.1]
def up
execute "DROP VIEW IF EXISTS public.cc_conditions CASCADE;"
# Recreate cc_conditions with ddi_slug
execute %Q|
CREATE VIEW public.cc_conditions AS
SELECT con.id,
con.instrument_id,
con.literal,
con.logic,... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20260421155655_add_filename_to_imports.rb | Ruby | mit | 19 | develop | 364 | # frozen_string_literal: true
class AddFilenameToImports < ActiveRecord::Migration[6.1]
def up
add_column :imports, :filename, :string
execute <<~SQL
UPDATE imports
SET filename = documents.filename
FROM documents
WHERE imports.document_id = documents.id
SQL
end
def down
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20201021193720_add_signed_off_to_instruments.rb | Ruby | mit | 19 | develop | 215 | class AddSignedOffToInstruments < ActiveRecord::Migration[5.2]
def change
unless column_exists? :instruments, :signed_off
add_column :instruments, :signed_off, :boolean, default: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151130062018_create_rds_qs.rb | Ruby | mit | 19 | develop | 273 | class CreateRdsQs < ActiveRecord::Migration[4.2]
def change
create_table :rds_qs do |t|
t.references :response_domain, polymorphic: true, index: true
t.references :question, polymorphic: true, index: true
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151206185120_create_maps.rb | Ruby | mit | 19 | develop | 433 | class CreateMaps < ActiveRecord::Migration[4.2]
def change
create_table :maps do |t|
t.references :source, polymorphic: true, index: true, null: false
t.references :variable, index: true, foreign_key: true, null: false
t.integer :x
t.integer :y
t.timestamps null: false
end
a... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20160716150053_add_order_to_rds_qs.rb | Ruby | mit | 19 | develop | 517 | class AddOrderToRdsQs < ActiveRecord::Migration[4.2]
def change
add_column :rds_qs, :rd_order, :integer
reversible do |dir|
dir.up do
execute <<-SQL
ALTER TABLE rds_qs
ADD CONSTRAINT unique_for_rd_order_within_question
UNIQUE (question_id, question_type, rd_order);... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20161209155519_unique_mapping.rb | Ruby | mit | 19 | develop | 274 | class UniqueMapping < ActiveRecord::Migration[5.0]
def change
add_index :maps, %i(source_id variable_id), unique: true, where: 'source_type = \'Variable\''
add_index :maps, %i(source_id variable_id x y), unique: true, where: 'source_type = \'Question\''
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20171212182936_make_prefix_unique.rb | Ruby | mit | 19 | develop | 283 | class MakePrefixUnique < ActiveRecord::Migration[5.0]
def change
reversible do |dir|
dir.up do
change_column :instruments, :prefix, :string, unique: true
end
dir.down do
change_column :instruments, :prefix, :string
end
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151130063811_create_instruments.rb | Ruby | mit | 19 | develop | 269 | class CreateInstruments < ActiveRecord::Migration[4.2]
def change
create_table :instruments do |t|
t.string :agency
t.string :version
t.string :prefix
t.string :label
t.string :study
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20160712131146_add_instrument_encapsulation.rb | Ruby | mit | 19 | develop | 10,604 | class AddInstrumentEncapsulation < ActiveRecord::Migration[4.2]
def change
reversible do |dir|
dir.up do
add_column :cc_conditions, :construct_type, :string, null: :false, default: 'CcCondition'
add_column :cc_loops, :construct_type, :string, null: :false, default: 'CcLoop'
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151204193654_add_not_null_foreign_keys.rb | Ruby | mit | 19 | develop | 1,084 | class AddNotNullForeignKeys < ActiveRecord::Migration[4.2]
def change
change_column :codes, :category_id, :integer, null: false
change_column :codes, :code_list_id, :integer, null: false
change_column :response_domain_codes, :code_list_id, :integer, null: false
change_column :rds_qs, :question_id, :in... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151130143016_create_response_domain_datetimes.rb | Ruby | mit | 19 | develop | 256 | class CreateResponseDomainDatetimes < ActiveRecord::Migration[4.2]
def change
create_table :response_domain_datetimes do |t|
t.string :datetime_type
t.string :label
t.string :format
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20161213091354_create_mapper_views.rb | Ruby | mit | 19 | develop | 1,068 | class CreateMapperViews < ActiveRecord::Migration[5.0]
def change
reversible do |dir|
dir.up do
execute <<~SQL
CREATE VIEW qv_mappings AS (
SELECT row_number() OVER () as id, COALESCE(cc.label, '0') as question, v.name as variable, m.x, m.y, qc.instrument_id, v.dataset_id FROM va... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20241124224933_create_exports.rb | Ruby | mit | 19 | develop | 384 | class CreateExports < ActiveRecord::Migration[6.1]
def change
create_table :exports do |t|
t.references :document, foreign_key: true, null: true
t.string :export_type
t.references :dataset, foreign_key: true, null: true
t.references :instrument, foreign_key: true, null: true
t.string... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20171124115905_adding_ancestoral_topic_materialized_view.rb | Ruby | mit | 19 | develop | 1,603 | class AddingAncestoralTopicMaterializedView < ActiveRecord::Migration[5.0]
def change
reversible do |dir|
dir.up do
execute <<~SQL
CREATE MATERIALIZED VIEW ancestral_topic AS (
WITH RECURSIVE cc_tree AS ( SELECT ccl.*, 1 AS level FROM cc_links ccl
UNION ALL
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151201095347_create_cc_questions.rb | Ruby | mit | 19 | develop | 217 | class CreateCcQuestions < ActiveRecord::Migration[4.2]
def change
create_table :cc_questions do |t|
t.references :question, polymorphic: true, index: true
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20190813092806_add_slug_to_instruments.rb | Ruby | mit | 19 | develop | 295 | class AddSlugToInstruments < ActiveRecord::Migration[5.0]
def change
unless column_exists? :instruments, :slug
add_column :instruments, :slug, :string
add_index :instruments, :slug, unique: true
end
Instrument.find_each{|i| i.update_column(:slug, i.prefix)}
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151206165407_create_datasets.rb | Ruby | mit | 19 | develop | 242 | class CreateDatasets < ActiveRecord::Migration[4.2]
def change
create_table :datasets do |t|
t.string :name, null: false, unique: true
t.string :doi
t.string :filename
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151201094202_create_control_constructs.rb | Ruby | mit | 19 | develop | 483 | class CreateControlConstructs < ActiveRecord::Migration[4.2]
def change
create_table :control_constructs do |t|
t.string :label
t.references :construct, polymorphic: true, index: true
t.integer :parent_id, index: true
# t.references :parent, index: true, foreign_key: true
t.integer :p... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151206110030_add_instrument_references_to_everything_but_junctions.rb | Ruby | mit | 19 | develop | 1,136 | class AddInstrumentReferencesToEverythingButJunctions < ActiveRecord::Migration[4.2]
def change
add_reference :categories, :instrument, index: true, null: false
add_reference :code_lists, :instrument, index: true, null: false
add_reference :response_domain_datetimes, :instrument, index: true, null: false
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151129205538_create_response_domain_codes.rb | Ruby | mit | 19 | develop | 235 | class CreateResponseDomainCodes < ActiveRecord::Migration[4.2]
def change
create_table :response_domain_codes do |t|
t.references :code_list, index: true, foreign_key: true
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20161027133806_add_question_label_constraints.rb | Ruby | mit | 19 | develop | 493 | class AddQuestionLabelConstraints < ActiveRecord::Migration[5.0]
def change
change_column_null :question_items, :label, false
change_column_null :question_grids, :label, false
add_index :question_grids, [:label, :instrument_id], unique: true unless index_exists?(:question_grids, [:label, :instrument_id],... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20160413095800_create_groups.rb | Ruby | mit | 19 | develop | 210 | class CreateGroups < ActiveRecord::Migration[4.2]
def change
create_table :groups do |t|
t.string :type
t.string :label
t.string :study
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20170519102218_create_groupings.rb | Ruby | mit | 19 | develop | 1,444 | class CreateGroupings < ActiveRecord::Migration[5.0]
def change
create_table :streamlined_groupings do |t|
t.references :item_group, foreign_key: true, null: false
t.integer :item_id, null: false, foreign_ke: true
t.timestamps
end
reversible do |dir|
dir.up do
execute <<~... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20160913201152_add_unique_labels_within_instrument.rb | Ruby | mit | 19 | develop | 661 | class AddUniqueLabelsWithinInstrument < ActiveRecord::Migration[5.0]
def change
add_index :control_constructs, [:label, :instrument_id], unique: true
add_index :code_lists, [:label, :instrument_id], unique: true
add_index :categories, [:label, :instrument_id], unique: true
add_index :instructions, [:t... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20151129205758_create_response_domain_texts.rb | Ruby | mit | 19 | develop | 219 | class CreateResponseDomainTexts < ActiveRecord::Migration[4.2]
def change
create_table :response_domain_texts do |t|
t.string :label
t.integer :maxlen
t.timestamps null: false
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | db/migrate/20160808100337_add_response_cardinality.rb | Ruby | mit | 19 | develop | 261 | class AddResponseCardinality < ActiveRecord::Migration[5.0]
def change
add_column :response_domain_codes, :min_responses, :integer, default: 1, null: false
add_column :response_domain_codes, :max_responses, :integer, default: 1, null: false
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers.rb | Ruby | mit | 19 | develop | 758 | module Importers
module Controller
extend ActiveSupport::Concern
included do
def member_imports
imports = params[:imports].nil? ? [] : params[:imports]
head :ok, format: :json if imports.empty?
begin
imports.each do |import|
doc = Document.new file: import[:... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/cache.rb | Ruby | mit | 19 | develop | 1,554 | module Cache
module Instrument
CACHE_METHODS = [
:question_items,
:question_grids,
:cc_conditions,
:cc_loops,
:cc_questions,
:cc_sequences,
:cc_statements
]
module Setting
extend ActiveSupport::Concern
included do
Cache::Instrumen... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/util.rb | Ruby | mit | 19 | develop | 227 | module Util
def self.question_label(name)
chunks = name.sub(/^q[cig]_/,'').sub(/_/, ' ').split(/_/)
if chunks.length > 1
return chunks[0] + '(' + chunks[1] + ')'
else
return chunks[0]
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/linkable_parent.rb | Ruby | mit | 19 | develop | 1,081 | module LinkableParent
extend ActiveSupport::Concern
included do
has_one :link, as: :target, dependent: :destroy
has_one :topic, through: :link
def find_closest_ancestor
begin
<<~SQL
WITH constructs_selection AS (
SELECT *
FROM cc_links
WHERE c... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/linkable.rb | Ruby | mit | 19 | develop | 1,283 | module Linkable
module Model
extend ActiveSupport::Concern
included do
has_one :link, as: :target, dependent: :destroy
has_one :topic, through: :link
def get_ancestral_topic
if self.respond_to? :resolved_topic
self.resolved_topic
elsif self.respond_to? :find_closes... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/data_tools.rb | Ruby | mit | 19 | develop | 565 | module DataTools
class << self
def similar_strands(datasets)
datasets = datasets.to_a
first = datasets.shift
output = []
first.variables.find_each do |v|
output << { 0 => v.name }
datasets.each_with_index do |dataset, i|
fz = FuzzyMatch.new(dataset.variables, rea... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/response_domain.rb | Ruby | mit | 19 | develop | 534 | module ResponseDomain
extend ActiveSupport::Concern
included do
has_many :rds_qs, class_name: 'RdsQs', as: :response_domain, dependent: :destroy
has_many :question_items, through: :rds_qs, source: :question, source_type: 'QuestionItem'
has_many :question_grids, through: :rds_qs, source: :question, sourc... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/rd_subtype_shim.rb | Ruby | mit | 19 | develop | 475 | module RdSubtypeShim
extend ActiveSupport::Concern
included do
before_action :subtype_shim, only: [:create, :update]
def subtype_shim
self.params[
self
.class
.model_class
.name
.underscore
.to_sym
][subtype] = self.... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/question.rb | Ruby | mit | 19 | develop | 4,616 | module Question
end
module Question::Model
extend ActiveSupport::Concern
included do
belongs_to :instrument
belongs_to :instruction
has_many :rds_qs, class_name: 'RdsQs', as: :question, dependent: :destroy
has_many :response_domain_codes, through: :rds_qs, source: :response_domain, source_type: 'Re... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/identifiable.rb | Ruby | mit | 19 | develop | 1,120 | module Identifiable
extend ActiveSupport::Concern
included do
has_many :identifiers, as: :item, dependent: :destroy
def self.find_by_identifier(id_type, value)
cache_result = $redis.hget 'identifiers', id_type + ':' + value.to_s
if cache_result.nil?
Identifier.includes(:item).where(item... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exportable.rb | Ruby | mit | 19 | develop | 1,333 | module Exportable
extend ActiveSupport::Concern
class_methods do
def tag
[self::NS, self::TYPE].join ':'
end
end
included do
after_commit :set_ddi_slug, on: :create
def urn=(value)
return unless value
value.match(/urn:ddi:(?<instrument_agency>.*):(?<instrument_prefix>.*)-(?... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/loggable.rb | Ruby | mit | 19 | develop | 929 | module Exporters::Loggable
extend ActiveSupport::Concern
included do
def set_export_to_running
return unless @export
@export.update(state: :running)
broadcast_progress("Export started")
@logs = []
@log_entry = {}
@errors = false
end
def set_export_to_finished
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/dataset.rb | Ruby | mit | 19 | develop | 2,608 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::Dataset}
#
# {::Dataset} is a direct alias of DDI 3.2 Dataset.
#
# This is not a real exporter, it actually performs transformations
# on the file imported and held in the database as a Document.
#
# @see ::Dataset
class Dataset
# Exports th... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/question_grid.rb | Ruby | mit | 19 | develop | 5,108 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::QuestionGrid}
#
# {::QuestionGrid} is a direct alias of DDI 3.2 QuestionItem.
#
# === Example
# doc = Nokogiri::XML::Document.new
# qg = QuestionGrid.first
# exporter = Exporters::XML::DDI::QuestionGrid.new doc
# xml_node = exporter.V3_2... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/instrument.rb | Ruby | mit | 19 | develop | 9,893 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::Instrument}
#
# {::Instrument} is a direct alias of DDI 3.2 Instrument.
#
# @example Exporting to file
# i = Instrument.first
# exp = Exporters::XML::DDI::Instrument.new
# exp.add_root_attributes
# filepath = exp.run i
#
# @example E... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/cc_question.rb | Ruby | mit | 19 | develop | 1,723 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::CcQuestion}
#
# {::CcQuestion} is a direct alias of DDI 3.2 QuestionConstruct.
#
# === Example
# doc = Nokogiri::XML::Document.new
# qc = CcQuestion.first
# exporter = Exporters::XML::DDI::CcQuestion.new doc
# xml_node = exporter.V3_2(qc... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/cc_statement.rb | Ruby | mit | 19 | develop | 1,582 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::CcStatement}
#
# {::CcStatement} is a direct alias of DDI 3.2 StatementItem.
#
# === Example
# doc = Nokogiri::XML::Document.new
# sta = CcStatement.first
# exporter = Exporters::XML::DDI::CcStatement.new doc
# xml_node = exporter.V3_2(s... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/cc_condition.rb | Ruby | mit | 19 | develop | 3,502 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::CcCondition}
#
# {::CcCondition} is a direct alias of DDI 3.2 IfThenElse.
#
# === Example
# doc = Nokogiri::XML::Document.new
# con = CcCondition.first
# exporter = Exporters::XML::DDI::CcCondition.new doc
# xml_node = exporter.V3_2(con)... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/question.rb | Ruby | mit | 19 | develop | 2,858 | module Exporters::XML::DDI
# Base class for exporting DDI questions
class Question < DdiExporterBase
# Performs the generic functions for exporting a question
# in DDI 3.2
#
# @param [Question::Model|Integer] id Either the question or question ID for exporting
# @return [Nokogiri::XML::Node] New... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/cc_sequence.rb | Ruby | mit | 19 | develop | 1,671 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::CcSequence}
#
# {::CcSequence} is a direct alias of DDI 3.2 Sequence.
#
# === Example
# doc = Nokogiri::XML::Document.new
# seq = CcSequence.first
# exporter = Exporters::XML::DDI::CcSequence.new doc
# xml_node = exporter.V3_2(seq)
#
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/ddi_exporter_base.rb | Ruby | mit | 19 | develop | 1,419 | module Exporters::XML::DDI
# Base DDI Exporter abstract class
#
# This class provides useful methods for all versions of DDI
# XML export.
#
# Instance variable @urn_prefix can be set in derived exporters to overload the default functionality
class DdiExporterBase
# Sets the XML document for exporting... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/code_list.rb | Ruby | mit | 19 | develop | 1,708 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::CodeList}
#
# {::CodeList} is a direct alias of DDI 3.2 CodeList.
#
# === Example
# doc = Nokogiri::XML::Document.new
# cl = CodeList.first
# exporter = Exporters::XML::DDI::CodeList.new doc
# xml_node = exporter.V3_2(cl)
#
# @see ::... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/cc_loop.rb | Ruby | mit | 19 | develop | 3,456 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::CcLoop}
#
# {::CcLoop} is a direct alias of DDI 3.2 Loop.
#
# === Example
# doc = Nokogiri::XML::Document.new
# loop = CcLoop.first
# exporter = Exporters::XML::DDI::CcLoop.new doc
# xml_node = exporter.V3_2(loop)
#
# @see ::CcLoop
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/category.rb | Ruby | mit | 19 | develop | 1,435 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::Category}
#
# {::Category} is a direct alias of DDI 3.2 Category.
#
# === Example
# doc = Nokogiri::XML::Document.new
# cat = Category.first
# exporter = Exporters::XML::DDI::Category.new doc
# xml_node = exporter.V3_2(cat)
#
# @see ... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/instruction.rb | Ruby | mit | 19 | develop | 1,322 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::Instruction}
#
# {::Instruction} is a direct alias of DDI 3.2 InterviewerInstruction.
#
# === Example
# doc = Nokogiri::XML::Document.new
# instruc = Instruction.first
# exporter = Exporters::XML::DDI::Instruction.new doc
# xml_node = ex... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/fragment.rb | Ruby | mit | 19 | develop | 982 | module Exporters::XML::DDI
# Static class to wrap DDI node exports into correctly formatted
# fragments
module Fragment
class << self
# Exports DDI 3.2 Fragment
#
# @param [DdiExporterBase] exporter_klass DDI node exporter class to use
# @param [Exportable] obj Item for exporting
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/question_item.rb | Ruby | mit | 19 | develop | 2,421 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::QuestionItem}
#
# {::QuestionItem} is a direct alias of DDI 3.2 QuestionItem.
#
# === Example
# doc = Nokogiri::XML::Document.new
# qi = QuestionItem.first
# exporter = Exporters::XML::DDI::QuestionItem.new doc
# xml_node = exporter.V3_2... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/exporters/xml/ddi/instrument_complete.rb | Ruby | mit | 19 | develop | 8,815 | module Exporters::XML::DDI
# DDI 3.2 XML Exporter for {::Instrument}
#
# {::Instrument} is a direct alias of DDI 3.2 Instrument.
#
# @example Exporting to file
# i = Instrument.first
# exp = Exporters::XML::DDI::Instrument.new
# exp.add_root_attributes
# filepath = exp.run i
#
# @example E... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/loggable.rb | Ruby | mit | 19 | develop | 681 | module Importers::Loggable
extend ActiveSupport::Concern
included do
def set_import_to_running
return unless @import
@import.update(state: :running)
@logs = []
@log_entry = {}
@errors = false
end
def set_import_to_finished
return unless @import
@import.update(... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/txt.rb | Ruby | mit | 19 | develop | 2,616 | module Importers::TXT
class Basic
def initialize(thing, options)
begin
if thing.is_a? String
@doc = open(thing) { |f| Importers::TXT::TabDelimited.new(f) }
else
document = ::Document.find thing
@doc = Importers::TXT::TabDelimited.new document.file_contents
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/txt/whii/code_list.rb | Ruby | mit | 19 | develop | 470 | class Importers::TXT::WHII::CodeList < Importers::TXT::Basic
def import
@doc.each do |name, values|
next if name.nil? || values.nil? || name.empty? || values.empty?
cl = @object.code_lists.create label: name
codes = values[0...-1].split ';'
codes.each do |code|
code_value, code_la... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/txt/mapper/topic_v.rb | Ruby | mit | 19 | develop | 2,095 | class Importers::TXT::Mapper::TopicV < Importers::TXT::Mapper::Dataset
def import(options = {})
variable_ids_to_delete = @object.variables.pluck(:id)
set_import_to_running
vars = @object.variables.includes(:questions, :src_variables, :der_variables, :topic)
@doc.each do |dataset, v, t|
log :inpu... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/txt/mapper/mapping.rb | Ruby | mit | 19 | develop | 3,815 | class Importers::TXT::Mapper::Mapping < Importers::TXT::Mapper::Instrument
def initialize(thing, options)
super(thing, options)
@variables_hash = @object.datasets.each_with_object({}) do |dataset, hash|
hash[dataset.instance_name] = dataset.variables
end
end
def import(options = {})
Map.whe... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/txt/mapper/topic_q.rb | Ruby | mit | 19 | develop | 2,019 | class Importers::TXT::Mapper::TopicQ < Importers::TXT::Mapper::Instrument
def import(options = {})
cc_question_ids_to_delete = @object.cc_questions.pluck(:id)
set_import_to_running
@doc.each do |control_construct_scheme, q, t|
log :input, "#{control_construct_scheme},#{q},#{t}"
begin
i... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/txt/mapper/dv.rb | Ruby | mit | 19 | develop | 2,269 | class Importers::TXT::Mapper::DV < Importers::TXT::Mapper::Dataset
def import(options = {})
set_import_to_running
vars = @object.variables.includes(:questions, :src_variables, :der_variables, :topic)
begin
@doc.each do |variable_dataset, v, source_dataset, s|
log :input, "#{variable_data... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/qsrx/specification.rb | Ruby | mit | 19 | develop | 825 | module Importers::XML::QSRX
class Specification < ParentalImporter
def initialize(thing)
if thing.is_a? String
@doc = open(thing) { |f| Nokogiri::XML(f) }
else
document = Document.find thing
@doc = Nokogiri::XML document.file_contents
end
@doc.remove_namespaces!
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/qsrx/branch.rb | Ruby | mit | 19 | develop | 461 | module Importers::XML::QSRX
class Branch < ParentalImporter
def XML_node(node)
@node = node.at_xpath('./if')
@@condition_counter += 1
condition = @instrument.cc_conditions.new(
label: 'c_' + @@condition_counter.to_s,
literal: @node.at_xpath('./condition')&.content.to_s,
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/qsrx/loop.rb | Ruby | mit | 19 | develop | 265 | module Importers::XML::QSRX
class Loop < ParentalImporter
def XML_node(node)
@node = node
loop = @instrument.cc_loops.new(
label: @node.at_xpath('./context')&.content
)
loop.save!
read_children(loop)
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/qsrx/module.rb | Ruby | mit | 19 | develop | 367 | module Importers::XML::QSRX
class Module < ParentalImporter
def XML_node(node)
@node = node
sequence = @instrument.cc_sequences.new(
label: @node.at_xpath('./context')&.content,
literal: @node.at_xpath('./rm_properties/label')&.content
)
sequence.save!
read_child... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/qsrx/parental_importer.rb | Ruby | mit | 19 | develop | 3,682 | module Importers::XML::QSRX
class ParentalImporter
@@statement_counter = 0
@@condition_counter = 0
def initialize(instrument)
@instrument = instrument
end
protected
def method_missing(m, *args, &block)
m.slice(0..4)
Rails.logger.warn "QSRX importer does not support #{m} tag... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/ddi/ddi_importer_base.rb | Ruby | mit | 19 | develop | 919 | module Importers::XML::DDI
class DdiImporterBase
include ::Importers::Loggable
private
def compose_urn(agency_node, id_node, version_node)
'urn:ddi:%{agency}:%{id}:%{version}' % {
agency: agency_node&.content,
id: id_node&.content,
version: version_node&.conten... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/ddi/question.rb | Ruby | mit | 19 | develop | 7,290 | module Importers::XML::DDI
class Question < DdiImporterBase
RESPONSE_DOMAIN_XPATH = './CodeDomain|./NumericDomain|./TextDomain|./DateTimeDomain'
STRUCTURED_RESPONSE_DOMAIN_XPATH = './StructuredMixedResponseDomain/ResponseDomainInMixed/CodeDomain|./StructuredMixedResponseDomain/ResponseDomainInMixed/NumericDom... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/ddi/instrument.rb | Ruby | mit | 19 | develop | 11,845 | module Importers::XML::DDI
class Instrument < DdiImporterBase
def initialize(thing, options = {})
if thing.is_a? String
@doc = open(thing) { |f| Nokogiri::XML(f) }
else
document = Document.find thing
@doc = Nokogiri::XML document.file_contents
end
@doc.remove_namesp... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/ddi/fragment_instance.rb | Ruby | mit | 19 | develop | 10,043 | module Importers::XML::DDI
class FragmentInstance
attr_accessor :questions, :errors
def initialize(xml_fragment, instrument)
@xml_fragment = xml_fragment
@node = Nokogiri(xml_fragment)
@node = @node.remove_namespaces!
@instrument = instrument
@urn_to_object_mapping = {}
s... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/ddi/validation_error.rb | Ruby | mit | 19 | develop | 212 | module Importers::XML::DDI
class ValidationError < ActiveRecord::RecordInvalid
attr_accessor :input
def initialize(input = '', record = nil)
@input = input
super(record)
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/ddi/instruction.rb | Ruby | mit | 19 | develop | 707 | module Importers::XML::DDI
class Instruction < DdiImporterBase
def initialize(instrument)
@instrument = instrument
end
def XML_node(node)
instruction = ::Instruction.new({urn: extract_urn_identifier(node), text: node.at_xpath('./InstructionText/LiteralText/Text').content})
begin
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/ddi/code_list.rb | Ruby | mit | 19 | develop | 1,437 | module Importers::XML::DDI
class CodeList < DdiImporterBase
def initialize(instrument)
@instrument = instrument
end
def XML_node(node)
codes_to_add = []
node.xpath('./Code').each_with_index do |code, i|
begin
co = ::Code.new ({
urn: extract_urn_identifier... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/ddi/dataset.rb | Ruby | mit | 19 | develop | 1,915 | module Importers::XML::DDI
class Dataset < DdiImporterBase
def initialize(thing, options = {})
if thing.is_a? String
@doc = open(thing) { |f| Nokogiri::XML(f) }
@filepath = thing
else
@document = Document.find thing
@doc = Nokogiri::XML @document.file_contents
@... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/importers/xml/ddi/category.rb | Ruby | mit | 19 | develop | 735 | module Importers::XML::DDI
class Category < DdiImporterBase
def initialize(instrument)
@instrument = instrument
end
def XML_node(node)
begin
cat = ::Category.new urn: extract_urn_identifier(node), label: node.at_xpath('./Label/Content').content
rescue
cat = ::Category.ne... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/tasks/document_cleanup.rake | Ruby | mit | 19 | develop | 3,070 | namespace :documents do
desc "Clean up old documents"
task cleanup: :environment do
puts "Starting document cleanup..."
# Show summary first
summary = Document.import_export_summary
puts "Current state:"
puts " Total documents: #{summary[:documents][:total]}"
puts " Safe to delete: #{... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/tasks/loader.rake | Ruby | mit | 19 | develop | 3,108 | desc 'Loads instrument'
task :load_instruments => :environment do
Dir.chdir ENV['LOAD_PATH']
files = Dir.entries(".").reject { |x| x[0,1] == "." }
files.each do |file|
if File.exist? file
im = Importers::XML::DDI::Instrument.new file
im.import
end
end
end
desc 'Loads dataset'
task :lo... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/tasks/similar.rake | Ruby | mit | 19 | develop | 1,177 | desc 'Find similar variables'
task :similar_variables => :environment do
filename = 'C:/CLOSER/Code/archivist/nounlist.txt'
if File.exist? filename
f = File.open filename
nouns = f.read
f.close
groups = {}
total = nouns.lines.count / 100.0
counter = 0
nouns.lines.each do |noun|
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/tasks/erd.rake | Ruby | mit | 19 | develop | 680 | desc 'Generate Entity Relationship Diagram but without Instrument'
task :generate_erd_woi do
system "erd --inheritance --exclude=Instrument --filetype=dot --notation=bachman --orientation=horizontal --direct --attributes=foreign_keys,content"
system "dot -Tpng erd.dot > app/assets/images/diagrams/erd-woi.png"... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/tasks/time.rake | Ruby | mit | 19 | develop | 962 | desc 'Time question_items caching'
task :question_items => :environment do
Instrument.all.each do
end
beginning_time = Time.now
Instrument.all.each do |i|
qis = i.question_items
end
end_time = Time.now
puts "Time elapsed #{(end_time - beginning_time)*1000} milliseconds for standard\n"
beginnin... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/tasks/util.rake | Ruby | mit | 19 | develop | 2,479 | desc 'Clear Archivist\'s tmp files (uploads)'
task :clear_task do
directories = [
'public/assets',
'public/assets/templates/**'
]
directories.each do |directory|
puts directory
begin
if directory[-2..-1] == '**'
recursive = true
directory = directory[0...-2]
else
... |
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