source stringclasses 1
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value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
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github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/tasks/export.rake | Ruby | mit | 19 | develop | 1,008 | namespace :export do
desc 'Export all updated instruments'
task instruments: :environment do
Instrument.find_each do |i|
begin
next if i.last_edited_time.nil?
if i.export_time.nil? || Date.parse(i.export_time.to_s) < Date.parse(i.last_edited_time.to_s)
exp = Exporters::XML::DDI:... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/tasks/start.rake | Ruby | mit | 19 | develop | 474 | namespace :start do
desc 'Start dev server'
task :development do
system 'cd react && npm install --legacy-peer-deps && npm audit fix --legacy-peer-deps'
exec 'bundle exec foreman start -f Procfile.dev'
end
desc 'Start production server'
task :production do
exec 'npm install --legacy-peer-deps && ... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | lib/tasks/mapping.rake | Ruby | mit | 19 | develop | 483 | namespace :mapping do
desc 'Clear and build all strands'
task compile_strands: :environment do
Strand.delete_all
CcQuestion.find_each do |qc|
s = Strand.new [qc]
s.save
end
Variable.find_each do |var|
s = Strand.new [var]
s.save
end
Map.where(source_type: CcQuestio... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/jobs/import_job.rb | Ruby | mit | 19 | develop | 1,830 | # frozen_string_literal: true
module ImportJob
class Basic
include Sidekiq::Worker
sidekiq_options queue: 'in_and_out'
def run(importer, options = {})
begin
trap 'TERM' do
importer.cancel
self.class.perform_async(importer.object.id, options)
exit 0
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/jobs/export_job.rb | Ruby | mit | 19 | develop | 3,270 | # frozen_string_literal: true
module ExportJob; end
class ExportJob::Base
include Sidekiq::Worker
include Exporters::Loggable
sidekiq_options queue: 'in_and_out'
def perform(id, options = {})
export_id = options["export_id"]
setup_export(export_id)
begin
set_export_to_running
proces... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/jobs/delete_job.rb | Ruby | mit | 19 | develop | 2,859 | # frozen_string_literal: true
module DeleteJob; end
class DeleteJob::Instrument
include Sidekiq::Worker
sidekiq_options queue: 'in_and_out'
def perform (instrument_id)
begin
instrument = ::Instrument.find instrument_id
instrument.destroy
::Instrument.last.touch(:updated_at)
rescue =>... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/jobs/copy_job.rb | Ruby | mit | 19 | develop | 317 | # frozen_string_literal: true
class CopyJob
include Sidekiq::Worker
sidekiq_options queue: 'in_and_out'
def perform (instrument_id, new_prefix, other_vals)
begin
orig = Instrument.find instrument_id
orig.copy new_prefix, other_vals
rescue => e
Rails.logger.fatal e
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/services/instruments/seed_defaults.rb | Ruby | mit | 19 | develop | 2,477 | module Instruments
# Seeds a freshly-created Instrument with the common response domains and
# the Yes/No code list that every new instrument should start with — see
# GH issue #87.
#
# The defaults are hard-coded constants. They are duplicated per-instrument
# at create time (each Instrument owns its own R... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/services/instruments/mappings_tsv_data_service.rb | Ruby | mit | 19 | develop | 4,069 | class Instruments::MappingsTsvDataService
def initialize(object, unmapped_variables)
@object = object
@unmapped_variables = unmapped_variables
@tsv_data = []
end
def generate_tsv_data
generate_question_items
generate_unmapped_variables
@tsv_data
end
private
def generate_question_i... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/services/instruments/control_construct_updater.rb | Ruby | mit | 19 | develop | 3,040 | # frozen_string_literal: true
module Instruments
class ControlConstructUpdater
include ActiveRecord::Sanitization::ClassMethods
def initialize(instrument, updates=[])
@instrument = instrument
@updates = updates.map{|u| u.to_hash.deep_symbolize_keys! }.select{|u| u[:type].present? && u[:parent][:... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/services/instruments/serializer.rb | Ruby | mit | 19 | develop | 3,598 | class Instruments::Serializer
include Pundit
attr_accessor :datasets, :instrument, :current_user, :auth_token
def initialize(instrument=nil, user=nil, auth_token=nil)
self.current_user = user
self.instrument = instrument
self.datasets = get_datasets
self.auth_token = auth_token
end
def cal... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/services/variables/serializer.rb | Ruby | mit | 19 | develop | 5,087 | class Variables::Serializer
attr_accessor :dataset
def initialize(dataset=nil)
self.dataset = dataset
end
def call
all
end
private
def all
connection = ActiveRecord::Base.connection
sql = %|
SELECT variables.id, variables.name, variables.label, variables.var_type, variable... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/instrument.rb | Ruby | mit | 19 | develop | 13,687 | # frozen_string_literal: true
# The Instrument is based on the Instrument model from DDI3.X and is one of the
# champion models that pulls together Archivist.
#
#
# Please visit http://www.ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/FieldLevelDocumentation/schemas/datacollection_xsd/elements/Instrument.h... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/response_domain_text.rb | Ruby | mit | 19 | develop | 603 | # frozen_string_literal: true
# The ResponseDomainText is based on the TextDomain model from DDI3.X
#
# Please visit http://www.ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/FieldLevelDocumentation/schemas/datacollection_xsd/elements/TextDomain.html
#
# === Properties
# * Label
# * Maxlen
class ResponseDom... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/cc_loop.rb | Ruby | mit | 19 | develop | 1,437 | # frozen_string_literal: true
# The CcLoop model directly relates to the DDI3.X LoopConstruct model
#
# Loops are one of the five control constructs used in the questionnaire profile
# and used in Archivist. This control construct provides a single repeatable branch for the
# instrument logic to progress. They typical... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/qv_mapping.rb | Ruby | mit | 19 | develop | 875 | # frozen_string_literal: true
# A representation of the database view for Q-V Mapping
#
# This cannot be used for creating, updating or deleting, but provides
# a quick way to view question-variable mapping.
#
# === Properties
# * id
# * source
# * variable
class QvMapping < ReadOnlyRecord
# Use id as a primary key
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/export.rb | Ruby | mit | 19 | develop | 673 | # frozen_string_literal: true
class Export < ApplicationRecord
belongs_to :document
belongs_to :dataset
belongs_to :instrument
delegate :filename, to: :document, allow_nil: true
# Cleanup old documents when export completes successfully
after_update :cleanup_old_documents, if: :saved_change_to_state?
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/identifier.rb | Ruby | mit | 19 | develop | 2,244 | # frozen_string_literal: true
# Any exportable item can have an unlimited number of Identifiers
#
# Identifiers are to ensure persistent identifiers can be created during
# import and export. They can be used as URNs or any other form of string
# based of unique identification. Each ID string must be unqiue within a
#... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/item_group.rb | Ruby | mit | 19 | develop | 924 | # frozen_string_literal: true
# A generic model to represent an DDI 3.X support item group
# e.g. VariableGroup
#
# An ItemGroup can also be purposed to represent groups with
# a root item.
#
# === Properties
# * Label
# * Group type
# * Item type
class ItemGroup < ApplicationRecord
# Groupings are the junction mode... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/import.rb | Ruby | mit | 19 | develop | 672 | # frozen_string_literal: true
class Import < ApplicationRecord
belongs_to :document, optional: true
belongs_to :dataset
belongs_to :instrument
before_create :set_filename
after_update :cleanup_old_documents, if: :saved_change_to_state?
def parsed_log
JSON.parse(log,symbolize_names: true) rescue []
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/user.rb | Ruby | mit | 19 | develop | 2,922 | # frozen_string_literal: true
# The User class representers a user account, controlling
# authentication and authorization
class User < ApplicationRecord
# All Users must belong to a {UserGroup}
belongs_to :group, class_name: 'UserGroup'
# Users do not have their own label, so it is delegated to the {UserGroup}... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/question_item.rb | Ruby | mit | 19 | develop | 1,033 | # frozen_string_literal: true
# The QuestionItem model directly relates to the DDI3.X QuestionItem model
#
# Please visit http://www.ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/FieldLevelDocumentation/schemas/datacollection_xsd/elements/QuestionItem.html
#
# === Properties
# * Label
# * Literal
class Que... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/children.rb | Ruby | mit | 19 | develop | 1,165 | # frozen_string_literal: true
class Children
include Enumerable
extend Forwardable
def_delegators :to_ary, :last
def initialize(assocs)
@cc_conditions = assocs[:cc_conditions]
@cc_loops = assocs[:cc_loops]
@cc_questions = assocs[:cc_questions]
@cc_sequences = assocs[:cc_sequences]
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/instruction.rb | Ruby | mit | 19 | develop | 1,226 | # frozen_string_literal: true
# The Instruction is based on the InterviewerInstruction model from DDI3.X
#
# A Instruction has a label and represents instructive text the is delivered
# with either a {QuestionGrid} or a {QuestionItem}.
#
# Please visit http://www.ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSche... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/dv_mapping.rb | Ruby | mit | 19 | develop | 494 | # frozen_string_literal: true
# A representation of the database view for DV Mapping
#
# This cannot be used for creating, updating or deleting, but provides
# a quick way to view derived variable mapping.
#
# === Properties
# * id
# * source
# * variable
class DvMapping < ReadOnlyRecord
# Use id as a primary key
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/response_domain_datetime.rb | Ruby | mit | 19 | develop | 726 | # frozen_string_literal: true
# The ResponseDomainDatetime is based on the DateTimeDomain model from DDI3.X
#
# Please visit http://www.ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/FieldLevelDocumentation/schemas/datacollection_xsd/elements/DateTimeDomain.html
#
# === Properties
# * Datetime Type
# * Labe... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/topic.rb | Ruby | mit | 19 | develop | 2,291 | # frozen_string_literal: true
# Topic represents a single entry from a controlled vocabulary of
# terms that can be applied to {CcQuestion questions} and
# {Variable variables}.
#
# Each item can only have one Topic.
#
# === Properties
# * Name
# * Code
# * Description
class Topic < ApplicationRecord
# Each Topic ca... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/code.rb | Ruby | mit | 19 | develop | 1,573 | # frozen_string_literal: true
# The Code is based on the Code model from DDI3.X and serves as the join between
# Categories and CodeLists
#
# A Code will have a value and use a Category to form a parallel to a DDI3.X Code
# which belongs to a single Code List.
#
# Please visit http://www.ddialliance.org/Specification/... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/user_group.rb | Ruby | mit | 19 | develop | 853 | # frozen_string_literal: true
# UserGroup represents a set of {User Users} that are interested in particular
# studies
#
# === Properties
# * group_type
# * label
# * study
class UserGroup < ApplicationRecord
# Each UserGroup can have multiple {User Users}
has_many :users, inverse_of: :group, foreign_key: :group_i... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/document.rb | Ruby | mit | 19 | develop | 11,970 | # frozen_string_literal: true
# Stores documents into the database
#
# Instead of a shared file store between web server nodes, Archivist
# makes use of the database as files are not accessed frequently
# enough to cause performance issues.
#
# === Properties
# * filename
# * content_type
# * file_contents
# * md5_has... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/grouping.rb | Ruby | mit | 19 | develop | 395 | # frozen_string_literal: true
# Forms a connection between a groupable item and a group
#
# This is a junction model to form a many-to-many between items
# and {ItemGroup groups}
class Grouping < ApplicationRecord
# Each grouping much belong to an {ItemGroup}
belongs_to :item_group
# Each grouping belongs to on... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/control_construct.rb | Ruby | mit | 19 | develop | 6,057 | # frozen_string_literal: true
# The ControlConstruct model is used to hold the positional information
# for all five of the construct models. Every construct must have one
# ControlConstruct and vice-versa.
#
# This is the abstract class that all five of the control constructs are
# eventually derived from.
#
# === Pr... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/parental_construct.rb | Ruby | mit | 19 | develop | 2,732 | # frozen_string_literal: true
# The ParentalConstruct model is an abstract class that provides
# the relationships for models that can have children to be able
# to access them.
class ParentalConstruct < ControlConstruct
include LinkableParent
self.abstract_class = true
# All {CcCondition} children
has_many :... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/dataset.rb | Ruby | mit | 19 | develop | 3,653 | # frozen_string_literal: true
# The Dataset is based on the DataSet model from DDI3.X and is one of the
# champion models that pulls together Archivist.
#
#
# Please visit http://www.ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/FieldLevelDocumentation/schemas/dataset_xsd/elements/DataSet.html
#
# === Prop... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/application_record.rb | Ruby | mit | 19 | develop | 4,397 | # frozen_string_literal: true
# ApplicationRecord should not be used direct, but rather serves as the base model for
# all other Archivist models.
#
# This model contains all the functionality that should apply to models that use a SQL
# database table to store data.
#
# This is an abstract class.
class ApplicationRec... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/cc_condition.rb | Ruby | mit | 19 | develop | 1,530 | # frozen_string_literal: true
# The CcCondition model directly relates to the DDI3.X IfThenElse model
#
# Conditions are one of the five control constructs used in the questionnaire profile
# and used in Archivist. This control construct provides two branches for the
# instrument logic to progress. They typically repr... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/cc_statement.rb | Ruby | mit | 19 | develop | 1,978 | # frozen_string_literal: true
# The CcStatement model directly relates to the DDI3.X Statement model
#
# Statements are one of the five control constructs used in the questionnaire profile
# and used in Archivist. This control construct allows a one-off text string to be
# placed into the structure of a questionnaire.... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/link.rb | Ruby | mit | 19 | develop | 271 | # frozen_string_literal: true
# A junction model to join {Topic Topics} to a linkable items
class Link < ApplicationRecord
# The linkable item
# targets can be a Variable or a CcQuestion
belongs_to :target, polymorphic: true
# The topic
belongs_to :topic
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/map.rb | Ruby | mit | 19 | develop | 1,077 | # frozen_string_literal: true
# A junction model to create mappings
#
# Performs either Q-V mapping for DV mapping by joining
# a {Variable} to either a {CcQuestion} or another
# Variable.
#
# === Properties
# * x
# * y
class Map < ApplicationRecord
# Each mapping needs a source {CcQuestion} or {Variable}
belongs_... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/instruments_datasets.rb | Ruby | mit | 19 | develop | 408 | # frozen_string_literal: true
# This serves as a junction model to allow many-to-many
# relations between {Instrument Instruments} and {Dataset Datasets}
#
# These connections only serve to scope Mapping work and do *not*
# represent a logical link.
class InstrumentsDatasets < ApplicationRecord
# Joining {Instrument... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/category.rb | Ruby | mit | 19 | develop | 911 | # frozen_string_literal: true
# The Category model directly relates to the DDI3.X Category model
#
# Typically multiple categories are used to create {CodeList CodeLists}.
#
# Please visit https://www.ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/FieldLevelDocumentation/schemas/logicalproduct_xsd/elements/... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/cc_question.rb | Ruby | mit | 19 | develop | 4,657 | # frozen_string_literal: true
# The CcQuestion model directly relates to the DDI3.X QuestionConstruct model
#
# Questions are one of the five control constructs used in the questionnaire profile
# and used in Archivist. This control construct provides a join between a question
# and the construct layer. They typically... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/response_domain_numeric.rb | Ruby | mit | 19 | develop | 1,246 | # frozen_string_literal: true
# The ResponseDomainNumeric is based on the NumericDomain model from DDI3.X
#
# Please visit http://www.ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/FieldLevelDocumentation/schemas/datacollection_xsd/elements/NumericDomain.html
#
# === Properties
# * Numeric Type
# * Label
# ... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/code_list.rb | Ruby | mit | 19 | develop | 3,804 | # frozen_string_literal: true
# The CodeList is based on the CodeList model from DDI3.X
#
# A CodeList has a label and typically pulls together multiple {Code Codes} to
# create either a {QuestionGrid} axis or a {ResponseDomain}.
#
# Please visit http://www.ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/Fie... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/response_unit.rb | Ruby | mit | 19 | develop | 552 | # frozen_string_literal: true
# The ResponseUnit is based on the ResponseUnit model from DDI3.X
#
# Please visit http://www.ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/FieldLevelDocumentation/schemas/datacollection_xsd/elements/ResponseUnit.html
#
# === Properties
# * Label
class ResponseUnit < Applicati... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/redis_record.rb | Ruby | mit | 19 | develop | 1,093 | # frozen_string_literal: true
# An abstract class for all Redis-backed models to
# derive from
class RedisRecord
class SCOPE; end
# Returns a list of all items from Redis
#
# @return [Array]
def self.all
all_keys = RedisRecord.all_keys
all_ids = all_keys.map { |x| x.split(':').last.to_i }
all_k... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/response_domain_code.rb | Ruby | mit | 19 | develop | 1,426 | # frozen_string_literal: true
# The ResponseDomainCode is based on the CodeDomain model from DDI3.X and serves as creates a
# response domain for a {CodeList}
#
# Using the min_responses and max_responses properties cardinality can be recorded.
#
# Please visit http://www.ddialliance.org/Specification/DDI-Lifecycle/3.... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/read_only_record.rb | Ruby | mit | 19 | develop | 915 | # frozen_string_literal: true
# An abstract class to represent a read only connection to the database
#
# Typically this abstract model should be used with a read only database view.
class ReadOnlyRecord < ActiveRecord::Base
self.abstract_class = true
#attr_readonly *column_names
# Returns whether the record i... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/cc_sequence.rb | Ruby | mit | 19 | develop | 1,350 | # frozen_string_literal: true
# The CcSequence model directly relates to the DDI3.X Sequence model
#
# Sequences are one of the five control constructs used in the questionnaire profile
# and used in Archivist. This control construct provides a single branch as a grouping
# method. They typically represent a section ... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/rds_qs.rb | Ruby | mit | 19 | develop | 1,174 | # frozen_string_literal: true
# A junction model to join response domains and questions
#
# Allows many-to-many connections between an instruments
# {Question::Model questions} and its
# {ResponseDomain response domains}. The junction also holds the order of the
# response domains when a question has multiple response... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/question_grid.rb | Ruby | mit | 19 | develop | 2,440 | # frozen_string_literal: true
# The QuestionGrid model directly relates to the DDI3.X QuestionGrid model
#
# Please visit http://www.ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/FieldLevelDocumentation/schemas/datacollection_xsd/elements/QuestionGrid.html
#
# === Properties
# * Label
# * Literal
# * Roste... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/models/variable.rb | Ruby | mit | 19 | develop | 4,866 | # frozen_string_literal: true
# The Variable is based on the Variable model from DDI3.X
#
# Please visit http://www.ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/FieldLevelDocumentation/schemas/logicalproduct_xsd/elements/Variable.html
#
# === Properties
# * Name
# * Label
# * Var_type
class Variable < App... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/mailers/user_mailer.rb | Ruby | mit | 19 | develop | 225 | # frozen_string_literal: true
class UserMailer < ApplicationMailer
default from: (ENV["FROM_ADDRESS"] || '')
def welcome(user)
@user = user
mail(to: @user.email, subject: 'Welcome to My Awesome Site')
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/helpers/devise_helper.rb | Ruby | mit | 19 | develop | 655 | # frozen_string_literal: true
module DeviseHelper
def devise_error_messages!
return '' unless devise_error_messages?
messages = resource.errors.full_messages.map { |msg| content_tag(:li, msg) }.join
sentence = I18n.t('errors.messages.not_saved',
:count => resource.errors.count,
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/helpers/application_helper.rb | Ruby | mit | 19 | develop | 227 | # frozen_string_literal: true
module ApplicationHelper
# A helper method to display text which is html_safe and has newlines removed
def d(string)
return unless string
string.gsub(/[\r\n]/, ' ').html_safe
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/policies/application_policy.rb | Ruby | mit | 19 | develop | 809 | # frozen_string_literal: true
class ApplicationPolicy
attr_reader :user, :record
def initialize(user, record)
raise user.inspect
raise Pundit::NotAuthorizedError, "must be logged in" unless user
@user = user
@record = record
end
def index?
false
end
def show?
scope.where(:id => r... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/policies/dataset_policy.rb | Ruby | mit | 19 | develop | 414 | # frozen_string_literal: true
class DatasetPolicy < ApplicationPolicy
class Scope < Scope
def resolve
u = user #|| User.where(api_key: params[:api_key]).where('api_key IS NOT NULL').first
begin
if u.group.study == '*'
return scope.all
else
return scope.where(study:... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/policies/user_group_policy.rb | Ruby | mit | 19 | develop | 236 | # frozen_string_literal: true
class UserGroupPolicy < ApplicationPolicy
class Scope < Scope
def resolve
if user.group.study == '*'
scope.all
else
scope.where(id: user.group)
end
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/policies/instrument_policy.rb | Ruby | mit | 19 | develop | 302 | # frozen_string_literal: true
class InstrumentPolicy < ApplicationPolicy
class Scope < ApplicationPolicy::Scope
def resolve
return scope.none if user.nil?
if user.group.study == '*'
scope.all
else
scope.where(study: user.group.study)
end
end
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/question_items_controller.rb | Ruby | mit | 19 | develop | 826 | # frozen_string_literal: true
# A controller for the model {QuestionItem}
class QuestionItemsController < QuestionController
# Initialise finding object for item based actions
only_set_object
# Set model for automatic CRUD actions
@model_class = QuestionItem
# List of params that can be set and edited
@p... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/response_domain_numerics_controller.rb | Ruby | mit | 19 | develop | 539 | # frozen_string_literal: true
# A controller for the model {ResponseDomainNumeric}
class ResponseDomainNumericsController < BasicInstrumentController
# The response domain has a subtype
include RdSubtypeShim
# Initialise finding object for item based actions
only_set_object
# Specifies the name of the subt... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/datasets_controller.rb | Ruby | mit | 19 | develop | 2,754 | # frozen_string_literal: true
class DatasetsController < ImportableController
include Importers::Controller
only_set_object { %i{ questions dv latest_document mapping_stats } }
has_importers({
dv: ImportJob::DV,
topicv: ImportJob::TopicV
})
#skip_before_action :authenti... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/cc_sequences_controller.rb | Ruby | mit | 19 | develop | 698 | # frozen_string_literal: true
# A controller for the model {CcSequence}
class CcSequencesController < ConstructController
# Allow topic linking
include Linkable::Controller
# Initialise finding object for item based actions
only_set_object { %i{set_topic} }
# Set model for automatic CRUD actions
@model_c... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/topics_controller.rb | Ruby | mit | 19 | develop | 1,134 | # frozen_string_literal: true
# A controller for the model {Topic}
class TopicsController < BasicController
# Initialise finding object for item based actions
only_set_object { %i{ question_statistics variable_statistics } }
# Set model for automatic CRUD actions
@model_class = Topic
# List of params that ... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/code_lists_controller.rb | Ruby | mit | 19 | develop | 4,116 | # frozen_string_literal: true
class CodeListsController < BasicInstrumentController
# Initialise finding object for item based actions
only_set_object
# Set model for automatic CRUD actions
@model_class = CodeList
# List of params that can be set and edited
@params_list = [:label, response_domain_code_at... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/variables_controller.rb | Ruby | mit | 19 | develop | 2,431 | # frozen_string_literal: true
class VariablesController < BasicController
include Linkable::Controller
prepend_before_action :set_dataset
only_set_object { %i{set_topic add_sources remove_source} }
@model_class = Variable
@params_list = [:name, :label, :var_type, :dataset_id]
def index
@variables = ... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/fallback_controller.rb | Ruby | mit | 19 | develop | 258 | # frozen_string_literal: true
class FallbackController < ApplicationController
skip_before_action :authenticate_user!, :authenticate_user_from_token!, only: [:index], raise: false
def index
render file: 'public/index.html', layout: false
end
end |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/cc_conditions_controller.rb | Ruby | mit | 19 | develop | 498 | # frozen_string_literal: true
# A controller for the model {CcCondition}
class CcConditionsController < ConstructController
# Allow topic linking
include Linkable::Controller
# Initialise finding object for item based actions
only_set_object { %i{set_topic} }
# Set model for automatic CRUD actions
@model... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/question_controller.rb | Ruby | mit | 19 | develop | 1,596 | # frozen_string_literal: true
class QuestionController < BasicInstrumentController
def show
respond_to do |f|
f.json { render json: @object}
f.xml { render body: @object.to_xml_fragment, content_type: 'application/xml' }
end
end
def create
if params[:fragment_xml]
fragment_instanc... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/imports_controller.rb | Ruby | mit | 19 | develop | 674 | # frozen_string_literal: true
class ImportsController < ApplicationController
before_action :set_documents
def index
@imports = Import.where(import_type: ['ImportJob::Instrument','ImportJob::Dataset']).order('imports.created_at DESC')
end
def show
@import = Import.find(params[:id])
end
def docum... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/response_domain_texts_controller.rb | Ruby | mit | 19 | develop | 392 | # frozen_string_literal: true
# A vanilla CRUD controller for the {ResponseDomainText} model
class ResponseDomainTextsController < BasicInstrumentController
# Initialise finding object for item based actions
only_set_object
# Set model for automatic CRUD actions
@model_class = ResponseDomainText
# List of ... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/application_controller.rb | Ruby | mit | 19 | develop | 1,945 | # frozen_string_literal: true
# Application Controller
class ApplicationController < ActionController::Base
# Prevent CSRF attacks by raising an exception.
# For APIs, you may want to use :null_session instead.
include Pundit::Authorization
protect_from_forgery with: :exception
skip_before_action :verify_aut... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/exports_controller.rb | Ruby | mit | 19 | develop | 707 | # frozen_string_literal: true
class ExportsController < ApplicationController
before_action :set_documents
def index
@exports = Export.where(export_type: ['ExportJob::Instrument','ExportJob::InstrumentComplete', 'ExportJob::Dataset']).order('exports.created_at DESC')
end
def show
@export = Export.fin... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/cc_loops_controller.rb | Ruby | mit | 19 | develop | 446 | # frozen_string_literal: true
# A controller for the model {CcLoop}
class CcLoopsController < ConstructController
# Allow topic linking
include Linkable::Controller
# Initialise finding object for item based actions
only_set_object { %i{set_topic} }
# Set model for automatic CRUD actions
@model_class = C... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/instruments_controller.rb | Ruby | mit | 19 | develop | 6,882 | # frozen_string_literal: true
class InstrumentsController < ImportableController
include Importers::Controller
include Exporters
has_importers({
qvmapping: ImportJob::Mapping,
topicq: ImportJob::TopicQ
})
only_set_object { %i{copy clear_cache response_domains response_dom... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/user_groups_controller.rb | Ruby | mit | 19 | develop | 563 | # frozen_string_literal: true
# A controller for the model {UserGroup}
class UserGroupsController < BasicController
# Initialise finding object for item based actions
only_set_object
# Set model for automatic CRUD actions
@model_class = UserGroup
# List of params that can be set and edited
@params_list =... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/importable_controller.rb | Ruby | mit | 19 | develop | 982 | # frozen_string_literal: true
class ImportableController < BasicController
class << self
attr_accessor :model_importer_class
end
def import
files = params[:files].nil? ? [] : params[:files]
options = {}
options[:prefix] = params[:instrument_prefix] if params.has_key? :instrument_prefix
optio... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/response_units_controller.rb | Ruby | mit | 19 | develop | 365 | # frozen_string_literal: true
# A vanilla CRUD controller for the {ResponseUnit} model
class ResponseUnitsController < BasicInstrumentController
# Initialise finding object for item based actions
only_set_object
# Set model for automatic CRUD actions
@model_class = ResponseUnit
# List of params that can be... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/basic_controller.rb | Ruby | mit | 19 | develop | 3,087 | # frozen_string_literal: true
# An abstract controller to handle the basic CRUD
# operations
class BasicController < ApplicationController
# List of params that can be set and edited
@params_list = []
# Defines class methods
class << self
# Makes model_class set and get-able
attr_accessor :model_class... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/basic_instrument_controller.rb | Ruby | mit | 19 | develop | 326 | # frozen_string_literal: true
class BasicInstrumentController < BasicController
prepend_before_action :set_instrument
private
def collection
@instrument.send self.class.model_class.name.tableize
end
def set_instrument
@instrument = policy_scope(Instrument).friendly.find(params[:instrument_id])
en... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/response_domain_datetimes_controller.rb | Ruby | mit | 19 | develop | 541 | # frozen_string_literal: true
# A controller for the model {ResponseDomainDatetime}
class ResponseDomainDatetimesController < BasicInstrumentController
# The response domain has a subtype
include RdSubtypeShim
# Initialise finding object for item based actions
only_set_object
# Specifies the name of the su... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/instruments_datasets_controller.rb | Ruby | mit | 19 | develop | 644 | # frozen_string_literal: true
class InstrumentsDatasetsController < BasicController
def create
@instrument = Instrument.find(params[:instrument_id])
InstrumentsDatasets.create!(instrument_id: params[:instrument_id], dataset_id: params[:dataset_id])
@instrument.touch
render json: Instruments::Serializ... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/cc_questions_controller.rb | Ruby | mit | 19 | develop | 4,024 | # frozen_string_literal: true
class CcQuestionsController < ConstructController
include Linkable::Controller
only_set_object { %i{variables set_topic add_variables remove_variable} }
prepend_before_action :create_response_unit, only: [:create, :update, :update_all]
@model_class = CcQuestion
@params_list =... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/construct_controller.rb | Ruby | mit | 19 | develop | 2,729 | # frozen_string_literal: true
class ConstructController < BasicInstrumentController
def create
begin
@object = collection.create(safe_params)
if @object.valid?
render :show, status: :created
else
render json: @object.errors.full_messages.to_sentence, status: :unprocessable_enti... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/instructions_controller.rb | Ruby | mit | 19 | develop | 361 | # frozen_string_literal: true
# A vanilla CRUD controller for the {Instruction} model
class InstructionsController < BasicInstrumentController
# Initialise finding object for item based actions
only_set_object
# Set model for automatic CRUD actions
@model_class = Instruction
# List of params that can be se... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/main_controller.rb | Ruby | mit | 19 | develop | 1,009 | # frozen_string_literal: true
class MainController < ApplicationController
def index
user_count ||= User.all.size
user_group_count ||= UserGroup.all.size
unless user_count == 0 && user_group_count == 0
render :index
else
render :first
end
end
def setup
begin
if params.h... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/categories_controller.rb | Ruby | mit | 19 | develop | 355 | # frozen_string_literal: true
# A vanilla CRUD controller for the {Category} model
class CategoriesController < BasicInstrumentController
# Initialise finding object for item based actions
only_set_object
# Set model for automatic CRUD actions
@model_class = Category
# List of params that can be set and ed... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/question_grids_controller.rb | Ruby | mit | 19 | develop | 537 | # frozen_string_literal: true
# A controller for the model {QuestionGrid}
class QuestionGridsController < QuestionController
# Initialise finding object for item based actions
only_set_object
# Set model for automatic CRUD actions
@model_class = QuestionGrid
# List of params that can be set and edited
@p... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/cc_statements_controller.rb | Ruby | mit | 19 | develop | 351 | # frozen_string_literal: true
# A controller for the model {CcStatement}
class CcStatementsController < ConstructController
# Initialise finding object for item based actions
only_set_object
# Set model for automatic CRUD actions
@model_class = CcStatement
# List of params that can be set and edited
@par... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/users/registrations_controller.rb | Ruby | mit | 19 | develop | 1,686 | # frozen_string_literal: true
class Users::RegistrationsController < Devise::RegistrationsController
clear_respond_to
respond_to :json
before_action :configure_permitted_parameters, if: :devise_controller?
# GET /resource/sign_up
# def new
# super
# end
# POST /resource
def create
super do |u... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/users/confirmations_controller.rb | Ruby | mit | 19 | develop | 2,342 | # frozen_string_literal: true
class Users::ConfirmationsController < Devise::ConfirmationsController
# GET /resource/confirmation/new
# def new
# super
# end
# POST /resource/confirmation
# def create
# super
# end
#GET /resource/confirmation?confirmation_token=abcdef
#def show
# super
#... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/users/admin_controller.rb | Ruby | mit | 19 | develop | 1,633 | # frozen_string_literal: true
class Users::AdminController < ApplicationController
def index
@collection = User.all
end
def whoami
@object = current_user
render :show
end
def show
@object = User.find safe_params
end
def create
@object = User.new safe_params
logger.debug @objec... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/users/sessions_controller.rb | Ruby | mit | 19 | develop | 1,044 | # frozen_string_literal: true
class Users::SessionsController < Devise::SessionsController
clear_respond_to
respond_to :json
# before_filter :configure_sign_in_params, only: [:create]
# GET /resource/sign_in
#def new
# super #{UserMailer.welcome(self.resource).deliver_now}
#end
# POST /resource/sign_i... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/users/passwords_controller.rb | Ruby | mit | 19 | develop | 1,952 | # frozen_string_literal: true
class Users::PasswordsController < Devise::PasswordsController
# GET /resource/password/new
# def new
# super
# end
# POST /resource/password
def create
self.resource = resource_class.send_reset_password_instructions(resource_params)
yield resource if block_given?
... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/instruments/imports_controller.rb | Ruby | mit | 19 | develop | 730 | # frozen_string_literal: true
class Instruments::ImportsController < ApplicationController
def index
instrument = Instrument.friendly.find(params[:instrument_id])
@imports = instrument.imports.order(created_at: 'DESC')
end
def show
instrument = Instrument.friendly.find(params[:instrument_id])
@i... |
github | CLOSER-Cohorts/archivist | https://github.com/CLOSER-Cohorts/archivist | app/controllers/datasets/imports_controller.rb | Ruby | mit | 19 | develop | 667 | # frozen_string_literal: true
class Datasets::ImportsController < ApplicationController
def index
dataset = Dataset.find(params[:dataset_id])
@imports = dataset.imports.order(created_at: 'DESC')
end
def show
dataset = Dataset.find(params[:dataset_id])
@import = dataset.imports.find(params[:id])
... |
github | byroot/explicit-parameters | https://github.com/byroot/explicit-parameters | Rakefile | Ruby | mit | 19 | master | 364 | require 'bundler/gem_tasks'
require 'rspec/core/rake_task'
RSpec::Core::RakeTask.new(:spec)
task default: :spec
namespace :spec do
task :all do
%w(4.2 5.0).each do |rails_version|
command = %W{
BUNDLE_GEMFILE=gemfiles/Gemfile.rails-#{rails_version}
rspec
}.join(' ')
puts comm... |
github | byroot/explicit-parameters | https://github.com/byroot/explicit-parameters | explicit-parameters.gemspec | Ruby | mit | 19 | master | 1,006 | # coding: utf-8
lib = File.expand_path('../lib', __FILE__)
$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
require 'explicit_parameters/version'
Gem::Specification.new do |spec|
spec.name = 'explicit-parameters'
spec.version = ExplicitParameters::VERSION
spec.authors = ['Jean Boussie... |
github | byroot/explicit-parameters | https://github.com/byroot/explicit-parameters | spec/controller_spec.rb | Ruby | mit | 19 | master | 2,216 | require 'spec_helper'
class DummyController < ActionController::Base
include ExplicitParameters::Controller
params do
accepts :page_size, Integer
accepts :published, Boolean, default: false
end
def index
render json: {value: params.page_size, type: params.page_size.class.name}
end
def error
... |
github | byroot/explicit-parameters | https://github.com/byroot/explicit-parameters | spec/parameters_spec.rb | Ruby | mit | 19 | master | 4,160 | require 'spec_helper'
RSpec.describe ExplicitParameters::Parameters do
let :definition do
ExplicitParameters::Parameters.define(:test) do
requires :id, Integer, numericality: {greater_than: 0}
accepts :name, String
accepts :title, String, default: 'Untitled'
end
end
let :parameters do
... |
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