source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | ManageIQ/manageiq-providers-amazon | https://github.com/ManageIQ/manageiq-providers-amazon | app/models/manageiq/providers/amazon/container_manager/service_offering.rb | Ruby | apache-2.0 | 19 | master | 238 | ManageIQ::Providers::Kubernetes::ContainerManager::ServiceOffering.include(ActsAsStiLeafClass)
class ManageIQ::Providers::Amazon::ContainerManager::ServiceOffering < ManageIQ::Providers::Kubernetes::ContainerManager::ServiceOffering
end |
github | ManageIQ/manageiq-providers-amazon | https://github.com/ManageIQ/manageiq-providers-amazon | app/models/manageiq/providers/amazon/container_manager/service_parameters_set.rb | Ruby | apache-2.0 | 19 | master | 253 | ManageIQ::Providers::Kubernetes::ContainerManager::ServiceParametersSet.include(ActsAsStiLeafClass)
class ManageIQ::Providers::Amazon::ContainerManager::ServiceParametersSet < ManageIQ::Providers::Kubernetes::ContainerManager::ServiceParametersSet
end |
github | ManageIQ/manageiq-providers-amazon | https://github.com/ManageIQ/manageiq-providers-amazon | app/models/manageiq/providers/amazon/container_manager/event_catcher/runner.rb | Ruby | apache-2.0 | 19 | master | 214 | class ManageIQ::Providers::Amazon::ContainerManager::EventCatcher::Runner < ManageIQ::Providers::BaseManager::EventCatcher::Runner
include ManageIQ::Providers::Kubernetes::ContainerManager::EventCatcherMixin
end |
github | ManageIQ/manageiq-providers-amazon | https://github.com/ManageIQ/manageiq-providers-amazon | app/models/manageiq/providers/amazon/storage_manager/ebs.rb | Ruby | apache-2.0 | 19 | master | 1,291 | class ManageIQ::Providers::Amazon::StorageManager::Ebs < ManageIQ::Providers::StorageManager
include ManageIQ::Providers::Amazon::ManagerMixin
delegate :availability_zones,
:authentication_check,
:authentication_status,
:authentications,
:authentication_for_summary,
... |
github | ManageIQ/manageiq-providers-amazon | https://github.com/ManageIQ/manageiq-providers-amazon | app/models/manageiq/providers/amazon/storage_manager/s3.rb | Ruby | apache-2.0 | 19 | master | 985 | class ManageIQ::Providers::Amazon::StorageManager::S3 < ManageIQ::Providers::StorageManager
supports :object_storage
include ManageIQ::Providers::Amazon::ManagerMixin
delegate :authentication_check,
:authentication_status,
:authentications,
:authentication_for_summary,
... |
github | ManageIQ/manageiq-providers-amazon | https://github.com/ManageIQ/manageiq-providers-amazon | app/models/manageiq/providers/amazon/storage_manager/s3/cloud_object_store_object.rb | Ruby | apache-2.0 | 19 | master | 893 | class ManageIQ::Providers::Amazon::StorageManager::S3::CloudObjectStoreObject < ::CloudObjectStoreObject
supports :delete do
if !ext_management_system
_("The Storage Object is not connected to an active %{table}") % {
:table => ui_lookup(:table => "ext_management_systems")
}
elsif !cloud_o... |
github | ManageIQ/manageiq-providers-amazon | https://github.com/ManageIQ/manageiq-providers-amazon | app/models/manageiq/providers/amazon/storage_manager/s3/cloud_object_store_container.rb | Ruby | apache-2.0 | 19 | master | 2,832 | class ManageIQ::Providers::Amazon::StorageManager::S3::CloudObjectStoreContainer < ::CloudObjectStoreContainer
supports :create
supports :delete do
unless ext_management_system
_("The Storage Container is not connected to an active %{table}") % {
:table => ui_lookup(:table => "ext_management_syst... |
github | ManageIQ/manageiq-providers-amazon | https://github.com/ManageIQ/manageiq-providers-amazon | app/models/manageiq/providers/amazon/storage_manager/ebs/cloud_volume.rb | Ruby | apache-2.0 | 19 | master | 10,999 | class ManageIQ::Providers::Amazon::StorageManager::Ebs::CloudVolume < ::CloudVolume
supports :create
supports :delete do
if !ext_management_system
_("the volume is not connected to an active Provider")
elsif status == "in-use"
_("cannot delete volume that is in use.")
end
end
supports :s... |
github | ManageIQ/manageiq-providers-amazon | https://github.com/ManageIQ/manageiq-providers-amazon | app/models/manageiq/providers/amazon/storage_manager/ebs/cloud_volume_snapshot.rb | Ruby | apache-2.0 | 19 | master | 2,053 | class ManageIQ::Providers::Amazon::StorageManager::Ebs::CloudVolumeSnapshot < ::CloudVolumeSnapshot
supports :create
supports :delete
def self.raw_create_snapshot(cloud_volume, options = {})
raise ArgumentError, _("cloud_volume cannot be nil") if cloud_volume.nil?
ext_management_system = cloud_volume.try... |
github | ManageIQ/manageiq-providers-amazon | https://github.com/ManageIQ/manageiq-providers-amazon | app/models/authenticator/amazon.rb | Ruby | apache-2.0 | 19 | master | 5,192 | module Authenticator
class Amazon < Base
def self.proper_name
'Amazon IAM'
end
def self.validate_config(config)
%i(amazon_key amazon_secret).map do |key|
if config[key].blank?
[key, "#{key} can't be blank"]
end
end.compact
end
def self.validate_connect... |
github | joshrlesch/fastlane-plugin-instrumented_tests | https://github.com/joshrlesch/fastlane-plugin-instrumented_tests | fastlane-plugin-instrumented_tests.gemspec | Ruby | mit | 19 | master | 1,418 | # coding: utf-8
lib = File.expand_path("../lib", __FILE__)
$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
require 'fastlane/plugin/instrumented_tests/version'
Gem::Specification.new do |spec|
spec.name = 'fastlane-plugin-instrumented_tests'
spec.version = Fastlane::InstrumentedTests::VERSIO... |
github | joshrlesch/fastlane-plugin-instrumented_tests | https://github.com/joshrlesch/fastlane-plugin-instrumented_tests | spec/spec_helper.rb | Ruby | mit | 19 | master | 391 | $LOAD_PATH.unshift File.expand_path('../../lib', __FILE__)
# This module is only used to check the environment is currently a testing env
module SpecHelper
end
require 'fastlane' # to import the Action super class
require 'fastlane/plugin/instrumented_tests' # import the actual plugin
Fastlane.load_actions # load ot... |
github | joshrlesch/fastlane-plugin-instrumented_tests | https://github.com/joshrlesch/fastlane-plugin-instrumented_tests | spec/instrumented_tests_action_spec.rb | Ruby | mit | 19 | master | 280 | describe Fastlane::Actions::InstrumentedTestsAction do
describe '#run' do
it 'prints a message' do
expect(Fastlane::UI).to receive(:message).with("The instrumented_tests plugin is working!")
Fastlane::Actions::InstrumentedTestsAction.run(nil)
end
end
end |
github | joshrlesch/fastlane-plugin-instrumented_tests | https://github.com/joshrlesch/fastlane-plugin-instrumented_tests | lib/fastlane/plugin/instrumented_tests.rb | Ruby | mit | 19 | master | 494 | require 'fastlane/plugin/instrumented_tests/version'
module Fastlane
module InstrumentedTests
# Return all .rb files inside the "actions" and "helper" directory
def self.all_classes
Dir[File.expand_path('**/{actions,helper}/*.rb', File.dirname(__FILE__))]
end
end
end
# By default we want to impo... |
github | joshrlesch/fastlane-plugin-instrumented_tests | https://github.com/joshrlesch/fastlane-plugin-instrumented_tests | lib/fastlane/plugin/instrumented_tests/actions/instrumented_tests_action.rb | Ruby | mit | 19 | master | 10,054 | require 'open3'
require 'tempfile'
module Fastlane
module Actions
module SharedValues
end
class InstrumentedTestsAction < Action
def self.run(params)
setup_parameters(params)
delete_old_emulators(params)
begin
begin
create_emulator(params)
... |
github | joshrlesch/fastlane-plugin-instrumented_tests | https://github.com/joshrlesch/fastlane-plugin-instrumented_tests | lib/fastlane/plugin/instrumented_tests/helper/instrumented_tests_helper.rb | Ruby | mit | 19 | master | 333 | module Fastlane
module Helper
class InstrumentedTestsHelper
# class methods that you define here become available in your action
# as `Helper::InstrumentedTestsHelper.your_method`
#
def self.show_message
UI.message("Hello from the instrumented_tests plugin helper!")
end
e... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | Rakefile | Ruby | mit | 19 | master | 1,868 | require 'rubygems'
require 'bundler'
begin
Bundler.setup(:default, :development)
rescue Bundler::BundlerError => e
$stderr.puts e.message
$stderr.puts "Run `bundle install` to install missing gems"
exit e.status_code
end
require 'rake'
require 'jeweler'
Jeweler::Tasks.new do |gem|
# gem is a Gem::Specifica... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | Gemfile | Ruby | mit | 19 | master | 689 | source "http://rubygems.org"
# Add dependencies required to use your gem here.
gem "activerecord", "~> 4.2.9"
gem "activesupport", "~> 4.2.9"
gem "mysql2", "~> 0.4.9"
gem "safe_attributes", "~> 1.0.10"
gem "activerecord-deprecated_finders", "... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | bio-ucsc-api.gemspec | Ruby | mit | 19 | master | 19,041 | # Generated by jeweler
# DO NOT EDIT THIS FILE DIRECTLY
# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
# -*- encoding: utf-8 -*-
# stub: bio-ucsc-api 0.6.5 ruby lib
Gem::Specification.new do |s|
s.name = "bio-ucsc-api".freeze
s.version = "0.6.5"
s.required_rubygems_version = Gem::Requirement... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc.rb | Ruby | mit | 19 | master | 5,645 | #
# = bio-ucsc.rb
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT license
base = "#{::File.dirname(__FILE__)}/bio-ucsc"
require 'rubygems'
require "active_support"
require "active_record"
require "safe_attributes"
requi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc-api.rb | Ruby | mit | 19 | master | 227 | #
# = bio-ucsc-api.rb
# Copyright:: Cioyrught (C) 2011-2017
# MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT license
#
# Just a alias for bio-ucsc
require 'bio-ucsc' |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/susscr2.rb | Ruby | mit | 19 | master | 2,127 | #
# = AUTOMATIC Table Definition of the Dog May 2005 (Broad/canFam2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/taegut1.rb | Ruby | mit | 19 | master | 2,445 | #
# = AUTOMATIC Table Definition of the Zebra finch Jul. 2008 (WUGSC 3.2.4/taeGut1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_dete... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/droyak2.rb | Ruby | mit | 19 | master | 2,307 | #
# = AUTOMATIC Table Definition of D. yakuba Nov. 2005 (WUGSC 7.1/droYak2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
m... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm10.rb | Ruby | mit | 19 | master | 2,121 | #
# = AUTOMATIC Table Definition of mm10
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio
module Uc... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/proteome.rb | Ruby | mit | 19 | master | 1,850 | #
# = AUTOMATIC Table Definition of Proteome
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio
module Ucsc
module Prote... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/genomic-interval-bin.rb | Ruby | mit | 19 | master | 248 | require "bio-genomic-interval"
module Bio
class GenomicInterval
def bin
Bio::Ucsc::UcscBin.bin(self.zero_start, self.zero_end)
end
def bin_all
Bio::Ucsc::UcscBin.bin_all(self.zero_start, self.zero_end)
end
end
end |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/table_class_detector.rb | Ruby | mit | 19 | master | 15,246 | #
# = table_class_detector.rb
#
# Copyright:: Copyright (C) 2011, 2012
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# == supported table categories and arguments/defaults
# psl :tableName, :bin => true
# bed... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/schema.rb | Ruby | mit | 19 | master | 8,162 | #
# = schema.rb
#
# Copyright:: Copyright (C) 2011, 2012
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
require 'open-uri'
module Bio
module Ucsc
module Schema
ALL_JOINER_URI =
"http://ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rhemac2.rb | Ruby | mit | 19 | master | 2,339 | #
# = AUTOMATIC Table Definition of the Rhesus Jan. 2006 (MGSC Merged 1.0/rheMac2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg38.rb | Ruby | mit | 19 | master | 2,078 | #
# = AUTOMATIC Table Definition of Hg38
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT license
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio
module Ucsc
module Hg38
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/felcat4.rb | Ruby | mit | 19 | master | 2,023 | #
# = AUTOMATIC Table Definition of the Cat Dec. 2008 (NHGRI/GTB V17e/felCat4) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/apimel2.rb | Ruby | mit | 19 | master | 2,189 | #
# = AUTOMATIC Table Definition of the A. mellifera Jan. 2005 (Baylor 2.0/apiMel2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_dete... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3.rb | Ruby | mit | 19 | master | 2,611 | #
# = AUTOMATIC Table Definition of the C. briggsae Jan. 2007 (WUGSC 1.0/cb3) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/anogam1.rb | Ruby | mit | 19 | master | 2,328 | #
# = AUTOMATIC Table Definition of the A. gambiae Feb. 2003 (IAGEC MOZ2/anoGam1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/uniprot.rb | Ruby | mit | 19 | master | 1,846 | #
# = AUTOMATIC Table Definition of Uniprot
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio
module Ucsc
module UniPro... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/galgal4.rb | Ruby | mit | 19 | master | 2,089 | #
# = AUTOMATIC Table Definition of the Chicken May 2006 (WUGSC 2.1/galGal3) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pripac1.rb | Ruby | mit | 19 | master | 2,450 | #
# = AUTOMATIC Table Definition of the P. pacificus Feb. 2007 (WUGSC 5.0/priPac1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/droper1.rb | Ruby | mit | 19 | master | 1,934 | #
# = AUTOMATIC Table Definition of the D. persimilis Oct. 2005 (Broad/droPer1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/file.rb | Ruby | mit | 19 | master | 333 | #
# = the Bio::Ucsc::File module
# Copyright:: Copyright (C) 2011-2012
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
require "#{::File.dirname(__FILE__)}/file/twobit"
require "#{::File.dirname(__FILE__)}/fil... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/droere1.rb | Ruby | mit | 19 | master | 1,935 | #
# = AUTOMATIC Table Definition of the D. erecta Aug. 2005 (Agencourt prelim/droEre1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_d... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ornana1.rb | Ruby | mit | 19 | master | 1,919 | #
# = AUTOMATIC Table Definition of the Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1)
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
modul... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/loxafr3.rb | Ruby | mit | 19 | master | 1,923 | #
# = AUTOMATIC Table Definition of the Elephant Jul. 2009 (Broad/loxAfr3) assembly
# Copyright:: Copyright (C) 2012-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
mo... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/danrer7.rb | Ruby | mit | 19 | master | 2,047 | #
# = AUTOMATIC Table Definition of the Zebrafish Jul. 2010 (Zv9/danRer7) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
mod... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6.rb | Ruby | mit | 19 | master | 2,831 | #
# = AUTOMATIC Table Definition of ce6
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio
module Ucsc
module Ce6
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/visigene.rb | Ruby | mit | 19 | master | 1,850 | #
# = AUTOMATIC Table Definition of VisiGene
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio
module Ucsc
module VisiG... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9.rb | Ruby | mit | 19 | master | 3,535 | #
# = AUTOMATIC Table Definition of mm9
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio
module Ucsc
module Mm9
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/strpur2.rb | Ruby | mit | 19 | master | 1,935 | #
# = AUTOMATIC Table Definition of the S. purpuratus Sep. 2006 (Baylor 2.1/strPur2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_det... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/droana2.rb | Ruby | mit | 19 | master | 1,938 | #
# = AUTOMATIC Table Definition of the D. ananassae Aug. 2005 (Agencourt prelim/droAna2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_clas... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/anocar2.rb | Ruby | mit | 19 | master | 1,899 | #
# = AUTOMATIC Table Definition of the Lizard May 2010 (Broad AnoCar2.0/anoCar2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/petmar1.rb | Ruby | mit | 19 | master | 1,923 | #
# = AUTOMATIC Table Definition of the Lamprey Mar. 2007 (WUGSC 3.0/petMar1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/gasacu1.rb | Ruby | mit | 19 | master | 2,747 | #
# = AUTOMATIC Table Definition of the Stickleback Feb. 2006 (Broad/gasAcu1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mondom5.rb | Ruby | mit | 19 | master | 1,955 | #
# = AUTOMATIC Table Definition of the Opossum Oct. 2006 (Broad/monDom5) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
mod... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dp3.rb | Ruby | mit | 19 | master | 2,433 | #
# = AUTOMATIC Table Definition of the D. pseudoobscura Nov. 2004 (FlyBase 1.03/dp3) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_de... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/gi.rb | Ruby | mit | 19 | master | 653 | #
# = gi.rb
# geomic interval wrapper
# if the input is String, returns a GenomicInterval object
#
# Copyright:: Copyright (C) 2012
# MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: Ruby licence (Ryby's / GPLv2 dual)
module Bio
module Ucsc
class Gi
def se... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2.rb | Ruby | mit | 19 | master | 2,604 | #
# = AUTOMATIC Table Definition of the Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/caerem3.rb | Ruby | mit | 19 | master | 2,095 | #
# = AUTOMATIC Table Definition of the C. remanei May 2007 (WUGSC 15.0.1/caeRem3) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ci2.rb | Ruby | mit | 19 | master | 2,033 | #
# = AUTOMATIC Table Definition of the C. intestinalis Mar. 2005 (JGI 2.1/ci2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detecto... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cavpor3.rb | Ruby | mit | 19 | master | 1,924 | #
# = AUTOMATIC Table Definition of the Guinea pig Feb. 2008 (Broad/cavPor3) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/reference.rb | Ruby | mit | 19 | master | 585 | #
# = reference.rb
# handle UCSC's 2bit file (locally stored) to retrieve the reference sequence
# after ver.0.4.0, Bio::Ucsc::Reference is moved to Bio::Ucsc::File::Twobit
#
# Copyright:: Cioyrught (C) 2011
# MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: Ruby licens... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/danrer10.rb | Ruby | mit | 19 | master | 2,054 | #
# = AUTOMATIC Table Definition of the Zebrafish Jul. 2010 (GRCz10/danRer10) assembly
# Copyright:: Copyright (C) 2011-2018
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/danrer11.rb | Ruby | mit | 19 | master | 2,054 | #
# = AUTOMATIC Table Definition of the Zebrafish Jul. 2010 (GRCz11/danRer11) assembly
# Copyright:: Copyright (C) 2011-2018
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/drosim1.rb | Ruby | mit | 19 | master | 2,290 | #
# = AUTOMATIC Table Definition of the D. simulans Apr. 2005 (WUGSC mosaic 1.0/droSim1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_clas... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18.rb | Ruby | mit | 19 | master | 3,619 | #
# = AUTOMATIC Table Definition of Hg18
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio
module Ucsc
module Hg18
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/bostau4.rb | Ruby | mit | 19 | master | 2,073 | #
# = AUTOMATIC Table Definition of he Cow Oct. 2007 (Baylor 4.0/bosTau4) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
mod... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/drosec1.rb | Ruby | mit | 19 | master | 1,934 | #
# = AUTOMATIC Table Definition of the D. sechellia Oct. 2005 (Broad/droSec1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/caepb2.rb | Ruby | mit | 19 | master | 2,086 | #
# = AUTOMATIC Table Definition of the C. brenneri Feb. 2008 (WUGSC 6.0.1/caePb2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/drogri1.rb | Ruby | mit | 19 | master | 1,939 | #
# = AUTOMATIC Table Definition of the D. grimshawi Aug. 2005 (Agencourt prelim/droGri1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_clas... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/equcab2.rb | Ruby | mit | 19 | master | 2,314 | #
# = AUTOMATIC Table Definition of the Dog May 2005 (Broad/canFam2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/orycun2.rb | Ruby | mit | 19 | master | 2,024 | #
# = AUTOMATIC Table Definition of the Rabbit Apr. 2009 (Broad/oryCun2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
modu... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ucsc_bin.rb | Ruby | mit | 19 | master | 4,187 | # = UCSCBin
# Author:: MISHIMA, Hiroyuki
# Copyright:: MISHIMA, Hiroyuki, 2010-2011
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# Original program in C by Jim Kent, 2002
# See also http://genomewiki.ucsc.edu/index.php/Bin_indexing_system;
# a paper Kent, et. al. Genome Research 2002.12:996-1006;
# and src... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dromoj2.rb | Ruby | mit | 19 | master | 1,941 | #
# = AUTOMATIC Table Definition of the D. mojavensis Aug. 2005 (Agencourt prelim/droMoj2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_cla... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg19.rb | Ruby | mit | 19 | master | 2,080 | #
# = AUTOMATIC Table Definition of Hg19
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio
module Ucsc
module Hg19
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3.rb | Ruby | mit | 19 | master | 3,230 | #
# = AUTOMATIC Table Definition of D. melanogaster Apr. 2006 (BDGP R5/dm3)
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/oviari1.rb | Ruby | mit | 19 | master | 2,068 | #
# = AUTOMATIC Table Definition of the Sheep Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_de... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/caljac3.rb | Ruby | mit | 19 | master | 2,043 | #
# = AUTOMATIC Table Definition of the Marmoset March 2009 (WUGSC 3.2/calJac3) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/aplcal1.rb | Ruby | mit | 19 | master | 1,929 | #
# = AUTOMATIC Table Definition of the Sea hare Sept. 2008 (Broad 2.0/aplCal1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detecto... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/go.rb | Ruby | mit | 19 | master | 1,786 | #
# = AUTOMATIC Table Definition of GO (gene ontology)
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio
module Ucsc
mo... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pantro3.rb | Ruby | mit | 19 | master | 2,052 | #
# = AUTOMATIC Table Definition of the Chimp Oct. 2010 (CGSC 2.1.3/panTro3) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/tetnig2.rb | Ruby | mit | 19 | master | 2,088 | #
# = AUTOMATIC Table Definition of the Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_dete... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/orylat2.rb | Ruby | mit | 19 | master | 2,054 | #
# = AUTOMATIC Table Definition of the Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/fr2.rb | Ruby | mit | 19 | master | 2,565 | #
# = AUTOMATIC Table Definition of the Fugu Oct. 2004 (JGI 4.0/fr2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/braflo1.rb | Ruby | mit | 19 | master | 2,420 | #
# = AUTOMATIC Table Definition of the Lancelet Mar. 2006 (JGI 1.0/braFlo1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn5.rb | Ruby | mit | 19 | master | 1,996 | #
# = AUTOMATIC Table Definition of the Rat Rn5 assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio
module Ucsc
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/drovir2.rb | Ruby | mit | 19 | master | 1,936 | #
# = AUTOMATIC Table Definition of the D. virilis Aug. 2005 (Agencourt prelim/droVir2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/xentro2.rb | Ruby | mit | 19 | master | 1,931 | #
# = AUTOMATIC Table Definition of the X. tropicalis Aug. 2005 (JGI 4.1/xenTro2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/saccer2.rb | Ruby | mit | 19 | master | 2,496 | #
# = AUTOMATIC Table Definition of the S. cerevisiae June 2008 (SGD/sacCer2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4.rb | Ruby | mit | 19 | master | 3,249 | #
# = AUTOMATIC Table Definition of the Rat Nov. 2004 (Baylor 3.4/rn4) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2.rb | Ruby | mit | 19 | master | 2,767 | #
# = AUTOMATIC Table Definition of the Dog May 2005 (Broad/canFam2) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/caejap1.rb | Ruby | mit | 19 | master | 2,096 | #
# = AUTOMATIC Table Definition of the C. japonica Mar. 2008 (WUGSC 3.0.2/caeJap1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_dete... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hgfixed.rb | Ruby | mit | 19 | master | 1,846 | #
# = AUTOMATIC Table Definition of HgFixed
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detector"
module Bio
module Ucsc
module HgFixe... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ailmel1.rb | Ruby | mit | 19 | master | 1,880 | #
# = AUTOMATIC Table Definition of the Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) assembly
# Copyright:: Copyright (C) 2011-2017
# MISHIMA, Hiroyuki
# <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT licence
#
require "#{::File.dirname(__FILE__)}/table_class_detec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/gasacu1/chaingalgal3link.rb | Ruby | mit | 19 | master | 3,125 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/gasacu1/chainmm9link.rb | Ruby | mit | 19 | master | 3,117 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/gasacu1/chainfr2link.rb | Ruby | mit | 19 | master | 3,117 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/gasacu1/chainmm9.rb | Ruby | mit | 19 | master | 3,109 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/gasacu1/chainorylat2link.rb | Ruby | mit | 19 | master | 3,125 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/gasacu1/chainanocar1link.rb | Ruby | mit | 19 | master | 3,125 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/gasacu1/rmsk.rb | Ruby | mit | 19 | master | 3,023 | # = rmsk.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, the Rmsk table is actually separated
# into "chr1_rmsk", "chr2_rmsk", etc. The Rmsk class dynamically
# define Rmsk::Chr1_Rm... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/gasacu1/chainorylat2.rb | Ruby | mit | 19 | master | 3,117 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
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