source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/mrna.rb | Ruby | mit | 19 | master | 3,064 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chainpantro2link.rb | Ruby | mit | 19 | master | 3,101 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chainrhemac2link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chainmm9link.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chainmm9.rb | Ruby | mit | 19 | master | 3,076 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chaincavpor3.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chainequcab1link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chainmondom4.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chainequcab1.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chaingalgal3.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chaindanrer4.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/rmsk.rb | Ruby | mit | 19 | master | 3,015 | # = rmsk.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, the Rmsk table is actually separated
# into "chr1_rmsk", "chr2_rmsk", etc. The Rmsk class dynamically
# define Rmsk::Chr1_Rm... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chaindanrer4link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chainmondom4link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/est.rb | Ruby | mit | 19 | master | 3,061 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chaincavpor3link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chaingalgal3link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/chainrhemac2.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/rn4/intronest.rb | Ruby | mit | 19 | master | 3,069 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/mrna.rb | Ruby | mit | 19 | master | 3,064 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/gold.rb | Ruby | mit | 19 | master | 3,065 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# his table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.find_by_interval calls a... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/chaincaepb1.rb | Ruby | mit | 19 | master | 3,107 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/chainpripac1.rb | Ruby | mit | 19 | master | 3,109 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/chaince6.rb | Ruby | mit | 19 | master | 3,101 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/gap.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/intronest.rb | Ruby | mit | 19 | master | 3,069 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/rmsk.rb | Ruby | mit | 19 | master | 3,015 | # = rmsk.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, the Rmsk table is actually separated
# into "chr1_rmsk", "chr2_rmsk", etc. The Rmsk class dynamically
# define Rmsk::Chr1_Rm... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/chaincaepb1link.rb | Ruby | mit | 19 | master | 3,083 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.find_by_interval calls ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/chaince6link.rb | Ruby | mit | 19 | master | 3,099 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/chaincaerem2link.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.find_by_interval calls ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/chaincaerem2.rb | Ruby | mit | 19 | master | 3,109 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/est.rb | Ruby | mit | 19 | master | 3,061 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/cb3/chainpripac1link.rb | Ruby | mit | 19 | master | 3,107 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/saccer2/t2micron_est.rb | Ruby | mit | 19 | master | 1,846 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/saccer2/t2micron_intronEst.rb | Ruby | mit | 19 | master | 1,859 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/saccer2/est.rb | Ruby | mit | 19 | master | 3,154 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/saccer2/t2micron_mrna.rb | Ruby | mit | 19 | master | 1,849 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/saccer2/t2micron_gold.rb | Ruby | mit | 19 | master | 1,872 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/saccer2/gap.rb | Ruby | mit | 19 | master | 3,178 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/saccer2/t2micron_gap.rb | Ruby | mit | 19 | master | 1,871 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/saccer2/intronest.rb | Ruby | mit | 19 | master | 3,166 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/saccer2/gold.rb | Ruby | mit | 19 | master | 3,180 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/saccer2/mrna.rb | Ruby | mit | 19 | master | 3,156 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/mrna.rb | Ruby | mit | 19 | master | 3,061 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/chaincaejap1link.rb | Ruby | mit | 19 | master | 3,101 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/chainselflink.rb | Ruby | mit | 19 | master | 3,112 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/chainself.rb | Ruby | mit | 19 | master | 3,071 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/gold.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/chaincaepb2.rb | Ruby | mit | 19 | master | 3,053 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/chainpripac1.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/t25mersrepeats.rb | Ruby | mit | 19 | master | 1,641 | #
# The T25mersRepeats class is for the 25merRepeats table
#
module Bio
module Ucsc
module Ce6
class T25mersRepeats < DBConnection
self.table_name = "25mersRepeats"
def self.find_by_interval(interval, opt = {:partial => true}); interval = Bio::Ucsc::Gi.wrap(interval)
find_first_o... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/chaincb3.rb | Ruby | mit | 19 | master | 3,044 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/intronest.rb | Ruby | mit | 19 | master | 3,071 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/chaincaerem3link.rb | Ruby | mit | 19 | master | 3,101 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/chaincaepb2link.rb | Ruby | mit | 19 | master | 3,098 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/gap.rb | Ruby | mit | 19 | master | 3,083 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/chainpripac1link.rb | Ruby | mit | 19 | master | 3,118 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/rmsk.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/chaincaerem3.rb | Ruby | mit | 19 | master | 3,056 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/est.rb | Ruby | mit | 19 | master | 3,059 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/chaincb3link.rb | Ruby | mit | 19 | master | 3,089 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ce6/chaincaejap1.rb | Ruby | mit | 19 | master | 3,056 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/apimel2/chaindm2.rb | Ruby | mit | 19 | master | 3,104 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/apimel2/chaindm2link.rb | Ruby | mit | 19 | master | 3,102 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/tetnig2/mrna.rb | Ruby | mit | 19 | master | 3,072 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/chainself.rb | Ruby | mit | 19 | master | 3,111 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/mrna.rb | Ruby | mit | 19 | master | 3,072 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/intronest.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/chainselflink.rb | Ruby | mit | 19 | master | 3,119 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/gold.rb | Ruby | mit | 19 | master | 3,096 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/chainmm9link.rb | Ruby | mit | 19 | master | 3,117 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/chainmm9.rb | Ruby | mit | 19 | master | 3,109 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/chainbostau4.rb | Ruby | mit | 19 | master | 3,117 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/gap.rb | Ruby | mit | 19 | master | 3,093 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/chainrn4link.rb | Ruby | mit | 19 | master | 3,117 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/chainbostau4link.rb | Ruby | mit | 19 | master | 3,125 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/chainrn4.rb | Ruby | mit | 19 | master | 3,109 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/est.rb | Ruby | mit | 19 | master | 3,069 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/canfam2/rmsk.rb | Ruby | mit | 19 | master | 3,023 | # = rmsk.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, the Rmsk table is actually separated
# into "chr1_rmsk", "chr2_rmsk", etc. The Rmsk class dynamically
# define Rmsk::Chr1_Rm... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2/chainmm9link.rb | Ruby | mit | 19 | master | 3,117 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2/est.rb | Ruby | mit | 19 | master | 3,069 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2/intronest.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2/chainornana1link.rb | Ruby | mit | 19 | master | 3,125 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2/chainmm9.rb | Ruby | mit | 19 | master | 3,109 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2/rmsk.rb | Ruby | mit | 19 | master | 3,023 | # = rmsk.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, the Rmsk table is actually separated
# into "chr1_rmsk", "chr2_rmsk", etc. The Rmsk class dynamically
# define Rmsk::Chr1_Rm... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2/gap.rb | Ruby | mit | 19 | master | 3,093 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2/chainrhemac2.rb | Ruby | mit | 19 | master | 3,117 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2/gold.rb | Ruby | mit | 19 | master | 3,096 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2/mrna.rb | Ruby | mit | 19 | master | 3,072 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2/chainrhemac2link.rb | Ruby | mit | 19 | master | 3,125 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/ponabe2/chainornana1.rb | Ruby | mit | 19 | master | 3,117 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chaincavpor3.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chaincavpor3.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/gap.rb | Ruby | mit | 19 | master | 3,034 | # = hg18/gap.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, e... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainponabe2.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chainponabe2.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainmondom4.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chainornana1.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/rmskrm327.rb | Ruby | mit | 19 | master | 3,030 | # = hg18/rmskrm327.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainequcab1.rb | Ruby | mit | 19 | master | 3,061 | # = hg18/chainequcab1
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainbostau4.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chainbostau4.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainpantro2.rb | Ruby | mit | 19 | master | 3,061 | # = hg18/chainpantro2
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainorylat2.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chainorylat2.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
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