source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsmcf7openchromgrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 547 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsMcf7OpenchromgrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.co... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbssaecctcfstdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsSaecCtcfStdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodesunyalbanygenestgm12878celf1rbpassocrna_spec.rb | Ruby | mit | 19 | master | 543 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeSunyAlbanyGeneStGm12878Celf1RbpAssocRna" do
describe "#find_by_interval" do
context "given range chr1:1-30,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.conn... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromdnaseprogfibpk_spec.rb | Ruby | mit | 19 | master | 823 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromDnaseProgfibPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasecaco2hotspotsrep1_spec.rb | Ruby | mit | 19 | master | 826 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseCaco2HotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsosteoblopenchromgrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 553 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsOsteoblOpenchromgrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehepg2h3k36me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHepg2H3k36me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehpafhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 824 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHpafHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/cytobandideo_spec.rb | Ruby | mit | 19 | master | 472 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::CytoBandIdeo" do
describe "#find_by_INTERVAL" do
context "given range chr1:1-5,000,000" do
it 'returns a results (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterva... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehct116pkrep2_spec.rb | Ruby | mit | 19 | master | 812 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHct116PkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInte... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseaoafpkrep1_spec.rb | Ruby | mit | 19 | master | 806 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseAoafPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterv... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsgm12892hudsonalphagrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 557 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsGm12892HudsonalphagrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnecti... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsag04449uwstamgrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 547 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsAg04449UwstamgrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.co... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/polyadb_spec.rb | Ruby | mit | 19 | master | 749 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::PolyaDb" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehepg2ctcfstdpk_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHepg2CtcfStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsag04450ctcfstdpkrep1_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsAg04450CtcfStdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarraynhlfsimplesignalrep1_spec.rb | Ruby | mit | 19 | master | 857 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayNhlfSimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhmveclblsimplesignalrep1_spec.rb | Ruby | mit | 19 | master | 869 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHmveclblSimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistoneh1hesch4k20me1stdpk_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneH1hescH4k20me1StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehepg2hotspotsrep1_spec.rb | Ruby | mit | 19 | master | 827 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHepg2HotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehvmfh3k4me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHvmfH3k4me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonek562h3k27me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneK562H3k27me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodesunyalbanytilinggm12878t7tagrbpassocrna_spec.rb | Ruby | mit | 19 | master | 545 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeSunyAlbanyTilingGm12878T7tagRbpAssocRna" do
describe "#find_by_interval" do
context "given range chr1:1-160,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.con... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromfairepanisletspk_spec.rb | Ruby | mit | 19 | master | 830 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromFairePanisletsPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehmech3k4me1stdpk_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHmecH3k4me1StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhmvecdlyneosimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 878 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHmvecdlyneoSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehsmmtctcfstdpk_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHsmmtCtcfStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarraynhdfneosimplesignalrep1_spec.rb | Ruby | mit | 19 | master | 866 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayNhdfneoSimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasesknshrahotspotsrep2_spec.rb | Ruby | mit | 19 | master | 833 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseSknshraHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonenhekh4k20me1stdpk_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneNhekH4k20me1StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbshek293yalegrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 541 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsHek293YalegrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.conne... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshepg2ctcfstdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHepg2CtcfStdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhaesimplesignalrep1_spec.rb | Ruby | mit | 19 | master | 854 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHaeSimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/connect_spec.rb | Ruby | mit | 19 | master | 485 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19" do
describe "#connection (using default parameters)" do
context "given no option" do
it "returns true" do
Bio::Ucsc::Hg19.default
Bio::Ucsc::Hg19.connect.should be_truthy
end
end
context "given fake server hostname" do
it "... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistoneaoafh3k4me3stdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 529 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneAoafH3k4me3StdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsgm12891hudsonalphagrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 557 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsGm12891HudsonalphagrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnecti... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonegm12878h3k27me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 537 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneGm12878H3k27me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehepg2h3k27acstdpk_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHepg2H3k27acStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromchiphepg2cmycpk_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromChipHepg2CmycPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehbmech3k4me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHbmecH3k4me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/oreganno_spec.rb | Ruby | mit | 19 | master | 465 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::Oreganno" do
describe "#find_by_interval" do
context 'given range chr1:1-1,000,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.p... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdgfhpafpk_spec.rb | Ruby | mit | 19 | master | 481 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDgfHpafPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/chainpetmar2_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::ChainPetMar2" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsag09319ctcfstdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsAg09319CtcfStdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromdnaseh9espk_spec.rb | Ruby | mit | 19 | master | 814 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromDnaseH9esPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseag09309pkrep2_spec.rb | Ruby | mit | 19 | master | 815 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseAg09309PkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseag09319hotspotsrep2_spec.rb | Ruby | mit | 19 | master | 833 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseAg09319HotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonecaco2h3k36me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneCaco2H3k36me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodesunyalbanygenestk562slbprbpassocrna_spec.rb | Ruby | mit | 19 | master | 535 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeSunyAlbanyGeneStK562SlbpRbpAssocRna" do
describe "#find_by_interval" do
context "given range chr1:1-30,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonenhah3k4me3stdpk_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneNhaH3k4me3StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehepg2h3k4me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHepg2H3k4me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsnhekctcfstdpkrep1_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsNhekCtcfStdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/netanocar2_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::NetAnoCar2" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehelas3h3k36me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 535 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHelas3H3k36me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayh7essimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 857 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayH7esSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/refgene_spec.rb | Ruby | mit | 19 | master | 2,809 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::RefGene" do
before :all do
Bio::Ucsc::Hg19.default
Bio::Ucsc::Hg19.connect
end
describe ".find_by_interval" do
context "given range chr1:1-100,000" do
it "returns an array of results" do
i = Bio::GenomicInterval.parse("chr1:1-100,000")
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/transmapinforefseq_spec.rb | Ruby | mit | 19 | master | 432 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::TransMapInfoRefSeq" do
describe "#find_by_mappedID" do
context 'given "NM_001001137.1-1.1"' do
it "returns (r.mappingId == 3)" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
r = Bio::Ucsc::Hg19::TransMapI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhpfsimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 854 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHpfSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromdnaselncapandropk_spec.rb | Ruby | mit | 19 | master | 832 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromDnaseLncapAndroPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsnt2d1yalegrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 539 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsNt2d1YalegrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/chainmondom5_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::ChainMonDom5" do
describe "#find_by_interval" do
context 'given range chr1:1-15,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehuvech3k27me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHuvecH3k27me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehmfhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 821 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHmfHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbshcfuwstamgrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 539 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsHcfUwstamgrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromdnaset47dpk_spec.rb | Ruby | mit | 19 | master | 814 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromDnaseT47dPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsag10803ctcfstdpkrep2_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsAg10803CtcfStdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdgfaoafhotspots_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDgfAoafHotspots" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromfairegm19239pk_spec.rb | Ruby | mit | 19 | master | 823 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromFaireGm19239Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseaoafhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 824 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseAoafHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsgm19240openchromgrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 553 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsGm19240OpenchromgrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistoneheeh3k4me3stdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHeeH3k4me3StdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsrptecsitesrep1_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsRptecSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromchipmcf7ctcfestropkrep1_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromChipMcf7CtcfEstroPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonesaech3k27me3stdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 531 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneSaecH3k27me3StdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehconfhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 827 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHconfHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsaoafctcfstdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsAoafCtcfStdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsprogfibsitesrep2_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsProgfibSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonegm06990h3k36me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneGm06990H3k36me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdgfnhdfadpkv2_spec.rb | Ruby | mit | 19 | master | 489 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDgfNhdfadPkV2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/nettetnig2_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::NetTetNig2" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/gold_spec.rb | Ruby | mit | 19 | master | 761 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::Gold" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-1,... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsmcf10aestamyalestruhlgrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 563 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsMcf10aesTamYalestruhlgrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConne... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonenhekh3k9acstdpk_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneNhekH3k9acStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/knowntoensembl_spec.rb | Ruby | mit | 19 | master | 422 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::KnownToEnsembl" do
describe "#find_by_name" do
context 'given "uc004cor.1"' do
it 'returns (r.value == "ENST00000387342")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
r = Bio::Ucsc::Hg19::KnownToEnsemb... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/netfr2_spec.rb | Ruby | mit | 19 | master | 475 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::NetFr2" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/chaingalgal3_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::ChainGalGal3" do
describe "#find_by_interval" do
context 'given range chr1:1-15,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhcpesimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 857 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHcpeSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromfairehepg2pk_spec.rb | Ruby | mit | 19 | master | 817 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromFaireHepg2Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicIn... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdgfhaepkv2_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDgfHaePkV2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicIn... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/knowntohinv_spec.rb | Ruby | mit | 19 | master | 361 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::KnownToHInv" do
describe "#find_by_name" do
context 'given "uc004fon.1"' do
it 'returns (r.mrnaAcc == "HIT000004659")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
Bio::Ucsc::Hg19::KnownToHInv.first.sho... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/file/twobit_spec.rb | Ruby | mit | 19 | master | 6,212 | describe "Bio::Ucsc::File::Twobit" do
before(:all) do
@ref18 = Bio::Ucsc::File::Twobit.open("samples/hg18.2bit")
@ref19 = Bio::Ucsc::File::Twobit.open("samples/hg19.2bit")
@ref38 = Bio::Ucsc::File::Twobit.open("samples/hg38.2bit")
end
describe ".open" do
context 'given "samples/hg18.2bit"' do
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodenhgridnasehschiprawhepg2_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeNhgriDnaseHsChipRawHepG2" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/estorientinfo_spec.rb | Ruby | mit | 19 | master | 480 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EstOrientInfo" do
describe "#find_by_interval" do
context "given range chr1:1-12,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencoderacefragshl60_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeRaceFragsHL60" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechippvaljun_spec.rb | Ruby | mit | 19 | master | 492 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipPvalJun" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalbrg1hr02_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalBrg1Hr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/numtsassembled_spec.rb | Ruby | mit | 19 | master | 469 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NumtSAssembled" do
describe "#find_by_interval" do
context "given range chr1:1-100,000,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chaingalgal3_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainGalGal3" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/intronest_spec.rb | Ruby | mit | 19 | master | 456 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::IntronEst" do
describe "#find_by_interval" do
context "given range chrX:1-1,000,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chrX... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdpxpehhamericas_spec.rb | Ruby | mit | 19 | master | 494 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpXpehhAmericas" do
describe "#find_by_interval" do
context "given range chr1:1-1,200,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.