source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechippvalpol2ngm06990_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipPvalPol2nGm06990" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuwregulomebasehepg2_spec.rb | Ruby | mit | 19 | master | 504 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUWRegulomeBaseHepG2" do
describe "#find_by_interval" do
context "given range chr11:1-116,000,000" do
it 'returns a record (r.chrom == "chr11")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdpxpehhoceania_spec.rb | Ruby | mit | 19 | master | 492 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpXpehhOceania" do
describe "#find_by_interval" do
context "given range chr1:1-1,200,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfullsgp2_spec.rb | Ruby | mit | 19 | master | 489 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullSgp2" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignmcf7allrawsignal_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignMCF7AllRawSignal" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snparrayillumina550_spec.rb | Ruby | mit | 19 | master | 498 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::SnpArrayIllumina550" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encoderegulomednasegm06990sens_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeRegulomeDnaseGM06990Sens" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuvadnarep8_spec.rb | Ruby | mit | 19 | master | 482 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUvaDnaRep8" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicIn... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiphith4achela_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipHitH4acHeLa" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesh3k27me3hr32_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesH3K27me3Hr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51prostatesignal_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51ProstateSignal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hapmapldphceu_spec.rb | Ruby | mit | 19 | master | 486 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HapmapLdPhCeu" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodenhgridnasehschippvalhela_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeNhgriDnaseHsChipPvalHela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hapmapsnpsceu_spec.rb | Ruby | mit | 19 | master | 482 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HapmapSnpsCEU" do
describe "#find_by_interval" do
context "given range chr1:1-100,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsignalnrsfhela_spec.rb | Ruby | mit | 19 | master | 506 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSignalNrsfHela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiphith3k4me1gm06990_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipHitH3K4me1GM06990" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chaincavpor3_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainCavPor3" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snparrayaffy6sv_spec.rb | Ruby | mit | 19 | master | 795 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::SnpArrayAffy6SV" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/phastcons28way_spec.rb | Ruby | mit | 19 | master | 469 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PhastCons28way" do
describe "#find_by_interval" do
context 'given range chr1:1-1,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesctcfhr08_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesCtcfHr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/nestedrepeatsrm327_spec.rb | Ruby | mit | 19 | master | 491 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NestedRepeatsRM327" do
describe "#find_by_interval" do
context "given range chr1:1-50,000" do
it "returens an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuppsalachiph4acbut0h_spec.rb | Ruby | mit | 19 | master | 502 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUppsalaChipH4acBut0h" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/cnpsebat2_spec.rb | Ruby | mit | 19 | master | 765 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::CnpSebat2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3helacyto_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3HeLaCyto" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicIn... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/allenbrainali_spec.rb | Ruby | mit | 19 | master | 463 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AllenBrainAli" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("c... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchipcenterh3k4me2k562_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipCenterH3K4me2K562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/cnpredon_spec.rb | Ruby | mit | 19 | master | 759 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::CnpRedon" do
describe "#find_by_interval" do
context "given range chr1:1-2,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesh3k27me3hr00_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesH3K27me3Hr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3k4me1hela_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3K4me1HeLa" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfulltwinscan_spec.rb | Ruby | mit | 19 | master | 497 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullTwinscan" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegasppartaugustusdual_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspPartAugustusDual" do
describe "#find_by_interval" do
context "given range chr11:1-2,000,000" do
it 'returns a record (r.chrom == "chr11")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdpihsamericas_spec.rb | Ruby | mit | 19 | master | 490 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpIhsAmericas" do
describe "#find_by_interval" do
context "given range chr1:1-1,200,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1tertbjsites_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1TertBJSites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/oreganno_spec.rb | Ruby | mit | 19 | master | 465 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Oreganno" do
describe "#find_by_interval" do
context 'given range chr1:1-1,000,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.p... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kiddeichlerdiscabc10_spec.rb | Ruby | mit | 19 | master | 496 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KiddEichlerDiscAbc10" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
s = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3hepg2bottomstrand_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3HepG2BottomStrand" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kiddeichlerdiscabc14_spec.rb | Ruby | mit | 19 | master | 496 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KiddEichlerDiscAbc14" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
s = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodestanfordchipk562sp1_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeStanfordChipK562Sp1" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfullgeneid_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullGeneId" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsignalbaf47k562_spec.rb | Ruby | mit | 19 | master | 508 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSignalBaf47K562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1fetalkidneysignal_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1FetalKidneySignal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/phylop28way_spec.rb | Ruby | mit | 19 | master | 463 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PhyloP28way" do
describe "#find_by_interval" do
context 'given range chr1:1-5,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.pa... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencodeintronoct05_spec.rb | Ruby | mit | 19 | master | 489 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeIntronOct05" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInte... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalemasplacrnatransmaprevmless36mer36bp_spec.rb | Ruby | mit | 19 | master | 540 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleMASPlacRNATransMapRevMless36mer36bp" do
describe "#find_by_interval" do
context "given range chr11:1-1,800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesp300hr02_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesP300Hr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesctcfhr32_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesCtcfHr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/oregannolink_spec.rb | Ruby | mit | 19 | master | 400 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::OregannoLink" do
describe "#find_all_by_id" do
context 'given "OREG0000000"' do
it 'returns an array of records' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::OregannoLink.find_all_b... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitesfos_spec.rb | Ruby | mit | 19 | master | 494 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesFos" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignbreastallrawsignal_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignBreastAllRawSignal" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/bacendpairs_spec.rb | Ruby | mit | 19 | master | 464 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BacEndPairs" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it 'returns an results (r.chrom = "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.pa... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netpetmar1_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetPetMar1" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodenhgridnasehschiprawhela_spec.rb | Ruby | mit | 19 | master | 508 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeNhgriDnaseHsChipRawHela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encoderikencageplus_spec.rb | Ruby | mit | 19 | master | 489 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeRikenCagePlus" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesh3k27me3hr08_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesH3K27me3Hr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51hepg2signal_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51HepG2Signal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snparrayaffy5_spec.rb | Ruby | mit | 19 | master | 486 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::SnpArrayAffy5" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3k4me3hfl1_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3K4me3HFL1" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdnghelaach3_p0_peak_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdNgHeLaAcH3_p0_peak" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/fox2clipclusters_spec.rb | Ruby | mit | 19 | master | 469 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Fox2ClipClusters" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesstricthish4hr00_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesStrictHisH4Hr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdphzysasia_spec.rb | Ruby | mit | 19 | master | 484 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpHzySAsia" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kiddeichlerdiscabc9_spec.rb | Ruby | mit | 19 | master | 494 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KiddEichlerDiscAbc9" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
s = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfullpairagonmultiple_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullPairagonMultiple" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/wgrna_spec.rb | Ruby | mit | 19 | master | 467 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::WgRna" do
describe "#find_by_slice" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInter... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuppsalachiph4acbut12h_spec.rb | Ruby | mit | 19 | master | 504 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUppsalaChipH4acBut12h" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdphzybantu_spec.rb | Ruby | mit | 19 | master | 484 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpHzyBantu" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chainfelcat3_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainFelCat3" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51prostatesites_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51ProstateSites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/augustusabinitio_spec.rb | Ruby | mit | 19 | master | 486 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AugustusAbinitio" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3helatopstrand_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3HeLaTopStrand" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdphzyamericas_spec.rb | Ruby | mit | 19 | master | 490 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpHzyAmericas" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesh4kac4hr32_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesH4Kac4Hr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3fragsnccit_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3FragsNCCIT" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/polyapredict_spec.rb | Ruby | mit | 19 | master | 462 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PolyaPredict" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("c... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalsirt1hr02_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalSirt1Hr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/refflat_spec.rb | Ruby | mit | 19 | master | 447 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::RefFlat" do
describe "#find_by_interval" do
context "given range chr1:1-50,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-5... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuwregulomebasehmec_spec.rb | Ruby | mit | 19 | master | 498 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUWRegulomeBaseHMEC" do
describe "#find_by_interval" do
context "given range chr7:1-117,000,000" do
it 'returns a record (r.chrom == "chr7")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netpantro2_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetPanTro2" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdphzyafrica_spec.rb | Ruby | mit | 19 | master | 486 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpHzyAfrica" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodetbachaiconsdec07_spec.rb | Ruby | mit | 19 | master | 494 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeTbaChaiConsDec07" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/tajdsnpad_spec.rb | Ruby | mit | 19 | master | 478 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::TajdSnpAd" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignbt474_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignBT474" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/knowngenepep_spec.rb | Ruby | mit | 19 | master | 416 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KnwonGenePep" do
describe "#find_by_name" do
context 'given name "uc009vjh.1"' do
it 'returns an results (r.seq =~ /\AMVTEFI/)' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KnownGen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyrnahl60signalhr02_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyRnaHl60SignalHr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdngheladmh3k4_p30_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdNgHeLaDmH3K4_p30" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodestanfordpromotershela_spec.rb | Ruby | mit | 19 | master | 506 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeStanfordPromotersHela" do
describe "#find_by_interval" do
context "given range chr11:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitesbaf47k562_spec.rb | Ruby | mit | 19 | master | 506 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesBaf47K562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitesbaf170_spec.rb | Ruby | mit | 19 | master | 500 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesBaf170" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1brainfrontallobesites_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1BrainFrontalLobeSites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodebufirstexonskmuscle_spec.rb | Ruby | mit | 19 | master | 500 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeBuFirstExonSkMuscle" do
describe "#find_by_interval" do
context "given range chr11:1-5,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3fragspc3_spec.rb | Ruby | mit | 19 | master | 489 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3FragsPC3" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/consindelshgmmcanfamconf_spec.rb | Ruby | mit | 19 | master | 430 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ConsIndelsHgMmCanFamConf" do
describe "#find_by_id" do
context 'given "IGS0001.1"' do
it "returns an record with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::ConsI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesstricthish4hr08_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesStrictHisH4Hr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chainrhemac2_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainRheMac2" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60signalstricthish4hr00_spec.rb | Ruby | mit | 19 | master | 529 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SignalStrictHisH4Hr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/illuminaprobesseq_spec.rb | Ruby | mit | 19 | master | 410 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::IlluminaProbesSeq" do
describe "#find_by_id" do
context 'given "ILMN_1825594"' do
it 'returns (r.seq =~ /\ACTCTCT/)' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::IlluminaProbesSeq.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdpxpehhsasia_spec.rb | Ruby | mit | 19 | master | 488 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpXpehhSAsia" do
describe "#find_by_interval" do
context "given range chr1:1-1,200,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspupdaugustusdual_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspUpdAugustusDual" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyrnahl60siteshr02_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyRnaHl60SitesHr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/agilentcgh1x1m_spec.rb | Ruby | mit | 19 | master | 488 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AgilentCgh1x1m" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
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