source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalctcfhr02_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalCtcfHr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsignalbaf155_spec.rb | Ruby | mit | 19 | master | 502 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSignalBaf155" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalp300hr32_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalP300Hr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdnghelarnap_p30_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdNgHeLaRnap_p30" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encoderna_spec.rb | Ruby | mit | 19 | master | 469 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeRna" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitespol2gm06990_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesPol2Gm06990" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechippvalbaf170k562_spec.rb | Ruby | mit | 19 | master | 506 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipPvalBaf170K562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/gold_spec.rb | Ruby | mit | 19 | master | 468 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Gold" do
describe "#find_by_interval" do
context "given range chrX:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/phastconselements44wayprimates_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PhastConsElements44wayPrimates" do
describe "#find_by_interval" do
context 'given range chr1:1-100,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalcebpehr02_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalCebpeHr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60signalstricth3k9k14dhr32_spec.rb | Ruby | mit | 19 | master | 535 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SignalStrictH3K9K14DHr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/exoniphy_spec.rb | Ruby | mit | 19 | master | 472 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Exoniphy" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignadiposeallrawsignal_spec.rb | Ruby | mit | 19 | master | 529 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignAdiposeAllRawSignal" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyrnagm06990sites_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyRnaGm06990Sites" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechippvaltaf_spec.rb | Ruby | mit | 19 | master | 492 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipPvalTaf" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalstrictp63_mactd_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalStrictp63_mActD" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kgcolor_spec.rb | Ruby | mit | 19 | master | 383 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KgColor" do
describe "#find_by_kgID" do
context 'given "uc001aaa.2"' do
it 'returns an results (r.r == 130)' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KgColor.find_by_kgID("uc001... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1testissites_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1TestisSites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuwregulomebasesknsh_spec.rb | Ruby | mit | 19 | master | 500 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUWRegulomeBaseSKnSH" do
describe "#find_by_interval" do
context "given range chr5:1-140,000,000" do
it 'returns a record (r.chrom == "chr5")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignlymphnode_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignLymphNode" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencoderacefragsgm06990_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeRaceFragsGM06990" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechippvalnrsfhela_spec.rb | Ruby | mit | 19 | master | 502 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipPvalNrsfHela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodenhgridnasehschiprawimr90_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeNhgriDnaseHsChipRawImr90" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfullexogean_spec.rb | Ruby | mit | 19 | master | 495 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullExogean" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/pgna12892_spec.rb | Ruby | mit | 19 | master | 770 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PgNA12892" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/phastconselements44way_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PhastConsElements44way" do
describe "#find_by_interval" do
context 'given range chr1:1-10,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesstrictrnaphr32_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesStrictRnapHr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitesp65nhelatnfa_spec.rb | Ruby | mit | 19 | master | 512 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesP65nHelaTnfa" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencoderacefragsstomach_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeRaceFragsStomach" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affyexontissuesgsmedian_spec.rb | Ruby | mit | 19 | master | 427 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyExonTissuesGsMedian" do
describe "#find_by_name" do
context 'given "uc001aaa.2"' do
it "returns an results (r.expCount == 33)" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::AffyE... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipstat1helamaskless50mer38bpsig_spec.rb | Ruby | mit | 19 | master | 536 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChIPSTAT1HeLaMaskLess50mer38bpSig" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/ucsfchipseqh3k4me3braincoverage_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::UcsfChipSeqH3K4me3BrainCoverage" do
describe "#find_by_interval" do
context 'given range chr1:1-600,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netcaljac1_spec.rb | Ruby | mit | 19 | master | 481 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetCalJac1" do
describe "#find_by_interval" do
context 'given range chr1:1-5,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snpseq_spec.rb | Ruby | mit | 19 | master | 413 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::SnpSeq" do
describe "#find_by_acc" do
context 'given "rs36190757"' do
it "returns a reasult (r.file_offset == 13957523844)" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::SnpSeq.find_b... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hg18contigdiff_spec.rb | Ruby | mit | 19 | master | 488 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Hg18ContigDiff" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeutexstagecmychelatags_spec.rb | Ruby | mit | 19 | master | 506 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUtexStageCMycHelaTags" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr10")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3nccit_spec.rb | Ruby | mit | 19 | master | 477 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3NCCIT" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInter... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesstricth3k9k14dhr02_spec.rb | Ruby | mit | 19 | master | 533 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesStrictH3K9K14DHr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/ctgpos_spec.rb | Ruby | mit | 19 | master | 470 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::CtgPos" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeutexchip2091fibmycstimraw_spec.rb | Ruby | mit | 19 | master | 512 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUtexChip2091fibMycStimRaw" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/imageclone_spec.rb | Ruby | mit | 19 | master | 388 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ImageClone" do
describe ".find_by_acc" do
context 'given "AF520790"' do
it 'returns (r[:type] == "mRNA")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::ImageClone.find_by_acc("AF5207... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3k4me3k562_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3K4me3K562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuvadnareplate_spec.rb | Ruby | mit | 19 | master | 489 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUvaDnaRepLate" do
describe "#find_by_interval" do
context "given range chr10:1-56,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyaleaffynb4rarnatars_spec.rb | Ruby | mit | 19 | master | 504 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleAffyNB4RARNATars" do
describe "#find_by_interval" do
context "given range chr11:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitescebpehr08_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesCebpeHr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignlymphnodeallrawsignal_spec.rb | Ruby | mit | 19 | master | 533 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignLymphNodeAllRawSignal" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalh4kac4hr08_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalH4Kac4Hr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snp129exceptions_spec.rb | Ruby | mit | 19 | master | 484 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Snp129Exceptions" do
describe "#find_by_interval" do
context "given range chr1:1-1,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiptaf250hct116_f_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipTaf250Hct116_f" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chainanocar1_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainAnoCar1" do
describe "#find_by_interval" do
context 'given range chrX:1-15,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdnghelastat1_p30_peak_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdNgHeLaStat1_p30_peak" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiphelah3h4ach3_p0_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipHeLaH3H4acH3_p0" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1brainhypothalamussites_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1BrainHypothalamusSites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/trnas_spec.rb | Ruby | mit | 19 | master | 472 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::TRNAs" do
describe "#find_by_interval" do
context "given range chr1:1-10,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignmcf7_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignMCF7" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netgasacu1_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetGasAcu1" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuwregulomebasecaco2_spec.rb | Ruby | mit | 19 | master | 500 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUWRegulomeBaseCaCo2" do
describe "#find_by_interval" do
context "given range chr5:1-140,000,000" do
it 'returns a record (r.chrom == "chr5")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/nscangene_spec.rb | Ruby | mit | 19 | master | 472 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NscanGene" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencodegenepseudomar07_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeGenePseudoMar07" do
describe "#find_by_interval" do
context "given range chr11:1-150,000,000" do
it 'returns (r.chrom == "chr11")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalrarahr02_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalRaraHr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitesnrsfhela_spec.rb | Ruby | mit | 19 | master | 504 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesNrsfHela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalrnaphr32_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalRnapHr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/pgventer_spec.rb | Ruby | mit | 19 | master | 767 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PgVenter" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/mammalpsg_spec.rb | Ruby | mit | 19 | master | 465 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::MammalPsg" do
describe "#find_by_interval" do
context "given range chr1:1-4,000,000" do
it 'returns a result (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.pa... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiphelah3h4ach4_p30_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipHeLaH3H4acH4_p30" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3k9me3_spec.rb | Ruby | mit | 19 | master | 497 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3K9me3" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfullaceview_spec.rb | Ruby | mit | 19 | master | 495 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullAceview" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/uppsalachipusf2signal_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::UppsalaChipUsf2Signal" do
describe "#find_by_interval" do
context 'given range chr1:1-5,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuvadnareptr50_spec.rb | Ruby | mit | 19 | master | 488 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUvaDnaRepTr50" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitescebpehr00_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesCebpeHr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyrnahelasignal_spec.rb | Ruby | mit | 19 | master | 497 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyRnaHeLaSignal" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/ntssstop5p_spec.rb | Ruby | mit | 19 | master | 782 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NtSssTop5p" do
describe "#find_by_interval" do
context "given range chr1:1-50,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("ch... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/sestanbrainatlas_spec.rb | Ruby | mit | 19 | master | 463 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::SestanBrainAtlas" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("c... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencoderacefragslung_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeRaceFragsLung" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netfr2_spec.rb | Ruby | mit | 19 | master | 475 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetFr2" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdnghelaach3_p30_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdNgHeLaAcH3_p30" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalh4kac4hr00_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalH4Kac4Hr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/targetscans_spec.rb | Ruby | mit | 19 | master | 471 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::TargetScanS" do
describe "#find_by_interval" do
context 'given range chr1:1-1,000,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterva... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3fragshepg2cyto_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3FragsHepG2Cyto" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chainornana1_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainOrnAna1" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesbrg1hr08_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesBrg1Hr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdpihsbantu_spec.rb | Ruby | mit | 19 | master | 484 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpIhsBantu" do
describe "#find_by_interval" do
context "given range chr1:1-1,200,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyaleaffyplacrnatransmap_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleAffyPlacRNATransMap" do
describe "#find_by_interval" do
context "given range chr11:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuwregulomebasecd4_spec.rb | Ruby | mit | 19 | master | 496 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUWRegulomeBaseCD4" do
describe "#find_by_interval" do
context "given range chr5:1-140,000,000" do
it 'returns a record (r.chrom == "chr5")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/agilentcgh105a_spec.rb | Ruby | mit | 19 | master | 484 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AgilentCgh105a" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfullpairagonmrna_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullPairagonMrna" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdpihssasia_spec.rb | Ruby | mit | 19 | master | 484 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpIhsSAsia" do
describe "#find_by_interval" do
context "given range chr1:1-1,200,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/knowntorefseq_spec.rb | Ruby | mit | 19 | master | 408 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KnownToRefSeq" do
describe ".find_by_name" do
context 'given "uc004fon.1"' do
it 'returns (r.value == "NM_018390")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KnownToRefSeq.find_b... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiphith3achela_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipHitH3acHeLa" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/find_by_spec.rb | Ruby | mit | 19 | master | 6,158 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Gdv (UsingChromBin)" do
describe "#find_by_interval" do
context 'given range chr1:120,266,000-120,315,000' do
it "returns some records" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInte... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiphelah3h4dmh3k4_p30_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipHeLaH3H4dmH3K4_p30" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kiddeichlerdiscg248_spec.rb | Ruby | mit | 19 | master | 498 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KiddEichlerDiscG248" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
s = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodenhgridnasehschiprawh9_spec.rb | Ruby | mit | 19 | master | 504 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeNhgriDnaseHsChipRawH9" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3k4me1_spec.rb | Ruby | mit | 19 | master | 497 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3K4me1" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/mrnarefseq_spec.rb | Ruby | mit | 19 | master | 431 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::MrnaRefseq" do
describe "#find_by_all_by_mrna" do
context 'given interval "AB000095"' do
it 'returns a result (r.refseq == "NM_001032367")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignliverallrawsignal_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignLiverAllRawSignal" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdpxpehheurope_spec.rb | Ruby | mit | 19 | master | 490 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpXpehhEurope" do
describe "#find_by_interval" do
context "given range chr1:1-1,200,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snparrayaffy250nsp_spec.rb | Ruby | mit | 19 | master | 803 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::SnpArrayAffy250Nsp" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.pa... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51brainhypothalamussites_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51BrainHypothalamusSites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesstrictp63_mactd_spec.rb | Ruby | mit | 19 | master | 528 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesStrictP63_mActD" do
describe "#find_by_interval" do
context "given range chr1:1-60,000,000" do
it 'returns a record (r.chrom == "chr10")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
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