source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/scblasttab_spec.rb | Ruby | mit | 19 | master | 402 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ScBlastTab" do
describe ".find_by_query" do
context 'given "uc001aby.2"' do
it 'returns (r.target == "YOR206W")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::ScBlastTab.find_by_quer... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitesbaf170k562_spec.rb | Ruby | mit | 19 | master | 508 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesBaf170K562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3k36me3_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3K36me3" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalstrictpol2hr02_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalStrictPol2Hr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/biocycpathway_spec.rb | Ruby | mit | 19 | master | 410 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BioCycPathway" do
describe "#find_by_kgID" do
context 'given "uc002tzo.1"' do
it 'returens a result (r.geneID == "UPP2")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::BioCycPathway.... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipstat1helamaskless50mer50bpsig_spec.rb | Ruby | mit | 19 | master | 537 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChIPSTAT1HeLaMaskLess50mer50bpSig" do
describe "#find_by_interval" do
context "given range chr10:1-56,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/knowntolocuslink_spec.rb | Ruby | mit | 19 | master | 415 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KnwonToLocusLink" do
describe "#find_by_name" do
context 'given "uc004fon.1"' do
it 'returns a result (r.value == "55344")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KnownToLocus... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencoderacefragsheart_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeRaceFragsHeart" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiphith3k4me2k562_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipHitH3K4me2K562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspupdsgp2_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspUpdSgp2" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/pgyh1_spec.rb | Ruby | mit | 19 | master | 758 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PgYh1" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-500... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/seq_spec.rb | Ruby | mit | 19 | master | 370 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Spec" do
describe "#find_all_acc" do
context 'given "G248P8398RH12"' do
it "returns (r.id == 11)" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::Seq.find_by_acc("G248P8398RH12")
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesstrictrnaphr02_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesStrictRnapHr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalemasnb4rnanprottarsrevmless36mer36bp_spec.rb | Ruby | mit | 19 | master | 540 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleMASNB4RNANProtTarsREVMless36mer36bp" do
describe "#find_by_interval" do
context "given range chr11:1-1,800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchipcenterh4ack562_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipCenterH4acK562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucdavistafgm_spec.rb | Ruby | mit | 19 | master | 486 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUCDavisTafGM" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechippvalp65chelatnfa_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipPvalP65cHelaTnfa" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfullfgenesh_spec.rb | Ruby | mit | 19 | master | 495 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullFgenesh" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3k4me3ptr8_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3K4me3Ptr8" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesstricth3k9k14dhr32_spec.rb | Ruby | mit | 19 | master | 533 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesStrictH3K9K14DHr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/knowncanonical_spec.rb | Ruby | mit | 19 | master | 468 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KnwonCanonical" do
describe "#find_by_interval" do
context "given range chr1:1-5,000" do
it 'returns an results (r.chrom = "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/mrnaorientinfo_spec.rb | Ruby | mit | 19 | master | 467 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::MrnaOrientInfo" do
describe "#find_by_interval" do
context "given range chr1:1-5,000" do
it 'returns a result (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.p... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsignalstat1helaifna_spec.rb | Ruby | mit | 19 | master | 516 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSignalStat1HelaIfna" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60signalstricth3k9k14dhr02_spec.rb | Ruby | mit | 19 | master | 535 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SignalStrictH3K9K14DHr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/gap_spec.rb | Ruby | mit | 19 | master | 466 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Gap" do
describe "#find_by_interval" do
context "given range chrX:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInte... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalemasplacrnanprottmrevmless36mer36bp_spec.rb | Ruby | mit | 19 | master | 538 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleMASPlacRNANprotTMREVMless36mer36bp" do
describe "#find_by_interval" do
context "given range chr11:1-1,800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalcebpehr32_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalCebpeHr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3helabottomstrand_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3HeLaBottomStrand" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/consindelshgmmcanfam_spec.rb | Ruby | mit | 19 | master | 494 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ConsIndelsHgMmCanFam" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/mmblasttab_spec.rb | Ruby | mit | 19 | master | 408 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::MmBlastTab" do
describe ".find_by_query" do
context 'given "uc009vjh.1"' do
it 'returns (r.target == "uc008lnp.1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::MmBlastTab.find_by_q... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalemasplacrnanprottarsrevmless36mer36bp_spec.rb | Ruby | mit | 19 | master | 542 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleMASPlacRNANprotTarsREVMless36mer36bp" do
describe "#find_by_interval" do
context "given range chr11:1-1,800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.conne... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affyexontissuesgs_spec.rb | Ruby | mit | 19 | master | 415 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyExonTissuesGs" do
describe "#find_by_name" do
context 'given "uc001aaa.2"' do
it "returns an results (r.expCount == 33)" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::AffyExonTis... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/eponine_spec.rb | Ruby | mit | 19 | master | 443 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Eponine" do
describe "#find_by_interval" do
context "given range chr1:1-1,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-1,00... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netcavpor3_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetCavPor3" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/db_connection_spec.rb | Ruby | mit | 19 | master | 991 | #
# = /spec/db_connection_spec.rb - Rspec specification for Ucsc::Hg18
#
# Copyright:: Cioyrught (C) 2011
# MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: Ruby licence (Ryby's / GPLv2 dual)
require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::DBConnection" do
describe ".... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kgtargetali_spec.rb | Ruby | mit | 19 | master | 462 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KgTargetAli" do
describe "#find_by_interval" do
context "given range chr1:1-5,000" do
it 'returns an record (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.par... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/knowntoensembl_spec.rb | Ruby | mit | 19 | master | 431 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KnwonToEnsembl" do
describe "#find_by_name" do
context 'given "uc004fqd.1"' do
it 'returns a result (r.value == "ENST00000402072")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::Know... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/uwnucoccdennis_spec.rb | Ruby | mit | 19 | master | 469 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::UwNucOccDennis" do
describe "#find_by_interval" do
context 'given range chr1:1-5,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalcebpehr00_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalCebpeHr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/laminb1lads_spec.rb | Ruby | mit | 19 | master | 473 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::LaminB1Lads" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterv... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/uppsalachipusf2sites_spec.rb | Ruby | mit | 19 | master | 485 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::UppsalaChipUsf2Sites" do
describe "#find_by_interval" do
context 'given range chr1:1-200,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/phastconselements44wayplacental_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PhastConsElements44wayPlacental" do
describe "#find_by_interval" do
context 'given range chr1:1-10,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspupdaugustusabinitio_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspUpdAugustusAbinitio" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51tertbjsignal_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51TertBJSignal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/nscanpasagene_spec.rb | Ruby | mit | 19 | master | 480 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NscanPasaGene" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesstricth3k9k14dhr08_spec.rb | Ruby | mit | 19 | master | 533 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesStrictH3K9K14DHr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdphzyeurope_spec.rb | Ruby | mit | 19 | master | 486 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpHzyEurope" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51placentasignal_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51PlacentaSignal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1placentasites_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1PlacentaSites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/sgpgene_spec.rb | Ruby | mit | 19 | master | 474 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::SgpGene" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/delconrad2_spec.rb | Ruby | mit | 19 | master | 480 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::DelConrad2" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/cnplocke_spec.rb | Ruby | mit | 19 | master | 761 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::CnpLocke" do
describe "#find_by_interval" do
context "given range chr1:1-2,000,000" do
it "returens an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchipach3imr90_f_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipAch3Imr90_f" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/all_est_spec.rb | Ruby | mit | 19 | master | 446 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::All_est" do
describe "#find_by_interval" do
context "given range chr1:1-15,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-15... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1brainhypothalamussignal_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1BrainHypothalamusSignal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chainpetmar1_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainPetMar1" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netrn4_spec.rb | Ruby | mit | 19 | master | 475 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetRn4" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencoderacefragsspleen_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeRaceFragsSpleen" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegasppartsaga_spec.rb | Ruby | mit | 19 | master | 489 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspPartSaga" do
describe "#find_by_interval" do
context "given range chr11:1-2,000,000" do
it 'returns a record (r.chrom == "chr11")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfullgeneidu12_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullGeneIdU12" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/acemblypep_spec.rb | Ruby | mit | 19 | master | 421 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AcemblyPep" do
describe "#find_by_name" do
context 'given name "7tm_1.13.aApr07"' do
it 'returns a result (r.seq =~ /\AMANVTL/).' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::Acembl... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuvadnareppans_spec.rb | Ruby | mit | 19 | master | 488 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUvaDnaRepPanS" do
describe "#find_by_interval" do
context "given range chr11:1-3,000,000" do
it 'returns a record (r.chrom == "chr11")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalcebpehr08_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalCebpeHr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencoderacefragsprimer_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeRaceFragsPrimer" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/rnacluster_spec.rb | Ruby | mit | 19 | master | 480 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::RnaCluster" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3k27me3_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3K27me3" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/multiz44way_spec.rb | Ruby | mit | 19 | master | 463 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Multiz44way" do
describe "#find_by_interval" do
context 'given range chr1:1-1,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.pa... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snparrayillumina300_spec.rb | Ruby | mit | 19 | master | 498 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::SnpArrayIllumina300" do
describe "#find_by_interval" do
context "given range chr1:1-2,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesstricth3k9k14dhr00_spec.rb | Ruby | mit | 19 | master | 533 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesStrictH3K9K14DHr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfullexonhunter_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullExonhunter" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/ccdsnotes_spec.rb | Ruby | mit | 19 | master | 397 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::CcdsNotes" do
describe "#find_by_all_by_ccds" do
context 'given interval "CCDS2524.1"' do
it 'returns 1 items"' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::CcdsNotes.find_all_by_cc... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1gm06990signal_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1GM06990Signal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsignalbaf170_spec.rb | Ruby | mit | 19 | master | 502 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSignalBaf170" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignmb435_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignMB435" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsignaltaf_spec.rb | Ruby | mit | 19 | master | 496 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSignalTaf" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalh3k27me3hr32_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalH3K27me3Hr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/augustusxra_spec.rb | Ruby | mit | 19 | master | 476 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AugustusXRA" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hapmapsnpsyri_spec.rb | Ruby | mit | 19 | master | 482 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HapmapSnpsYRI" do
describe "#find_by_interval" do
context "given range chr1:1-600,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalctcfhr08_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalCtcfHr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hapmapldphyri_spec.rb | Ruby | mit | 19 | master | 486 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HapmapLdPhYri" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchipctcf_spec.rb | Ruby | mit | 19 | master | 491 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipCTCF" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netfelcat3_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetFelCat3" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph4ac_spec.rb | Ruby | mit | 19 | master | 491 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH4ac" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3fragsjurkat_spec.rb | Ruby | mit | 19 | master | 495 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3FragsJurkat" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/ucsfrnaseqbrainallcoverage_spec.rb | Ruby | mit | 19 | master | 489 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::UcsfRnaSeqBrainAllCoverage" do
describe "#find_by_interval" do
context 'given range chr1:1-500' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/nthumchimpcodingdiff_spec.rb | Ruby | mit | 19 | master | 502 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NtHumChimpCodingDiff" do
describe "#find_by_interval" do
context "given range chr1:1-10,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/agilentcgh244a_spec.rb | Ruby | mit | 19 | master | 484 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AgilentCgh244a" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51braincerebellumsignal_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51BrainCerebellumSignal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuwregulomebasek562_spec.rb | Ruby | mit | 19 | master | 498 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUWRegulomeBaseK562" do
describe "#find_by_interval" do
context "given range chr11:1-5,000,000" do
it 'returns a record (r.chrom == "chr11")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netrhemac2_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetRheMac2" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiphith3k4me2gm06990_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipHitH3K4me2GM06990" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignheart_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignHeart" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiphelah3h4tmh3k4_p0_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipHeLaH3H4tmH3K4_p0" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeutexchiphelamycraw_spec.rb | Ruby | mit | 19 | master | 498 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUtexChipHeLaMycRaw" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/oregannoattr_spec.rb | Ruby | mit | 19 | master | 400 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::OregannoAttr" do
describe "#find_all_by_id" do
context 'given "OREG0000000"' do
it 'returns an array of records' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::OregannoAttr.find_all_b... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3k4me2k562_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3K4me2K562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3u87mg_spec.rb | Ruby | mit | 19 | master | 477 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3U87MG" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInter... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/knownblasttab_spec.rb | Ruby | mit | 19 | master | 424 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KnownBlastTab" do
describe "#find_by_query" do
context 'given "uc009vjh.1"' do
it 'returns an results (r.target = "uc001aal.1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KnownBl... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kg2tokg3_spec.rb | Ruby | mit | 19 | master | 398 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Kg2ToKg3" do
describe "#find_by_oldId" do
context 'given "BC073913"' do
it "returns an results (r.newId == 0)" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::Kg2ToKg3.find_by_oldId("B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3achfl1_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3acHFL1" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
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