source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeutexchip2091fibmycpeaks_spec.rb | Ruby | mit | 19 | master | 508 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUtexChip2091fibMycPeaks" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/knowntognf1h_spec.rb | Ruby | mit | 19 | master | 427 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KnwonToGnf1h" do
describe "#find_by_name" do
context 'given "uc004fpz.1"' do
it 'returns a result (r.value == "gnf1h01802_s_at")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KnownT... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/ntooahaplo_spec.rb | Ruby | mit | 19 | master | 785 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NtOoaHaplo" do
describe "#find_by_interval" do
context "given range chr1:1-200,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("c... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51k562sites_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51K562Sites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipstat1helamaskless50mer50bpsite_spec.rb | Ruby | mit | 19 | master | 541 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChIPSTAT1HeLaMaskLess50mer50bpSite" do
describe "#find_by_interval" do
context "given range chr13:1-113,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.conne... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechippvalbaf155k562_spec.rb | Ruby | mit | 19 | master | 506 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipPvalBaf155K562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/multiz17wayframes_spec.rb | Ruby | mit | 19 | master | 475 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Multiz17wayFrames" do
describe "#find_by_interval" do
context 'given range chr1:1-5,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInter... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalbrg1hr32_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalBrg1Hr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3sk_n_as_spec.rb | Ruby | mit | 19 | master | 481 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3SK_N_AS" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/transmapalnucscgenes_spec.rb | Ruby | mit | 19 | master | 474 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::TransMapAlnUcscGenes" do
describe "#find_by_interval" do
context "given range chr1:1-900,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.pa... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodepseudogenegis_spec.rb | Ruby | mit | 19 | master | 489 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodePseudogeneGIS" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3k4me2hfl1_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3K4me2HFL1" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3ack562_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3acK562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodenhgridnasehschiprawcd4_spec.rb | Ruby | mit | 19 | master | 506 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeNhgriDnaseHsChipRawCd4" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalstricthish4hr02_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalStrictHisH4Hr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuvadnareporiginsnshela_spec.rb | Ruby | mit | 19 | master | 506 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUvaDnaRepOriginsNSHela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/gnfu95distance_spec.rb | Ruby | mit | 19 | master | 426 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::GnfU95Distance" do
describe "#find_by_query" do
context 'given "uc003esc.1"' do
it 'returens a result (r.target == "uc003esf.1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::GnfU95... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechippvalbaf170_spec.rb | Ruby | mit | 19 | master | 498 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipPvalBaf170" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snparrayilluminahumancytosnp_12_spec.rb | Ruby | mit | 19 | master | 522 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::SnpArrayIlluminaHumanCytoSNP_12" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/nettetnig1_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetTetNig1" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechippvalh4kac4hela_spec.rb | Ruby | mit | 19 | master | 506 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipPvalH4kac4Hela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/uppsalachipusf1signal_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::UppsalaChipUsf1Signal" do
describe "#find_by_interval" do
context 'given range chr1:1-5,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucdavischipmyc_spec.rb | Ruby | mit | 19 | master | 490 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUCDavisChipMyc" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/knowntovisigene_spec.rb | Ruby | mit | 19 | master | 406 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KnownToVisiGene" do
describe ".find_by_name" do
context 'given "uc001aab.2"' do
it 'returns (r.value == "179407")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KnownToVisiGene.find_... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60signalstrictpol2hr08_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SignalStrictPol2Hr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiprnapthp1_f_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipRnapThp1_f" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60signalstricthish4hr02_spec.rb | Ruby | mit | 19 | master | 529 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SignalStrictHisH4Hr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesrnaphr08_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesRnapHr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/illuminaprobesalign_spec.rb | Ruby | mit | 19 | master | 480 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::IlluminaProbesAlign" do
describe "#find_by_interval" do
context "given range chr1:1-135.000,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/tfbsconssites_spec.rb | Ruby | mit | 19 | master | 475 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::TfbsConsSites" do
describe "#find_by_interval" do
context 'given range chr1:1-1,000,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInter... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph4acmolt4_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH4acMolt4" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitesh4kac4gm06990_spec.rb | Ruby | mit | 19 | master | 514 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesH4kac4Gm06990" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyrnahl60siteshr00_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyRnaHl60SitesHr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitessirt1hr02_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesSirt1Hr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignt47d_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignT47D" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/agilenthrd1x1m_spec.rb | Ruby | mit | 19 | master | 484 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AgilentHrd1x1m" do
describe "#find_by_interval" do
context "given range chr1:1-200,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netornana1_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetOrnAna1" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/firstef_spec.rb | Ruby | mit | 19 | master | 443 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::FirseEF" do
describe "#find_by_interval" do
context "given range chr1:1-1,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-1,00... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyaleaffynb4rarnatransmap_spec.rb | Ruby | mit | 19 | master | 512 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleAffyNB4RARNATransMap" do
describe "#find_by_interval" do
context "given range chr11:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitessmarca6hela_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesSmarca6Hela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kgalias_spec.rb | Ruby | mit | 19 | master | 405 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KgAlias" do
describe "#find_by_kgID" do
context 'given "uc001aaa.2"' do
it 'returns an results (r.alias == "BC032353")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KgAlias.find_by_... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchipcenterh3ack562_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipCenterH3acK562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencoderacefragsliver_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeRaceFragsLiver" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/simplerepeat_spec.rb | Ruby | mit | 19 | master | 481 | !require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::SimpleRepeat" do
describe "#find_by_interval" do
context "given range chr1:1-200,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitesjun_spec.rb | Ruby | mit | 19 | master | 494 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesJun" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechippvalp65nhelatnfa_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipPvalP65nHelaTnfa" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesrnaphr00_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesRnapHr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechippvalsmarca4hela_spec.rb | Ruby | mit | 19 | master | 508 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipPvalSmarca4Hela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencoderacefragskidney_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeRaceFragsKidney" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60signalstrictpol2hr00_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SignalStrictPol2Hr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucdavistafhelas3_spec.rb | Ruby | mit | 19 | master | 494 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUCDavisTafHelaS3" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyrnahl60siteshr08_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyRnaHl60SitesHr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/evofold_spec.rb | Ruby | mit | 19 | master | 474 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Evofold" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_proteome.rb | Ruby | mit | 19 | master | 1,013 | #!/usr/bin/env ruby
# Proteome spec generator
SPEC_FILE = "../spec/proteome_spec.rb"
KLASS = "Bio::Ucsc::Proteome"
TABLES = %w(
hgnc
hgncXref
history
interProXref
pbAnomLimit
pbResAvgStd
pbStamp
pdbSP
pepCCntDist
pepHydroDist
pepIPCntDist
pepMolWtDist
pepMwAa
pepPi
pepPiDist
pepResDist
pfamDesc
pfamXref
spDeleted
spD... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_drosec1.rb | Ruby | mit | 19 | master | 1,142 | #!/usr/bin/env ruby
# D. sechellia DroSec1 spec generator
SPEC_FILE = "../spec/drosec1_spec.rb"
KLASS = "Bio::Ucsc::DroSec1"
TABLES = %w(
author
blastDm2FB
cds
cell
chainDm3
chainDm3Link
chromInfo
description
development
gap
gbCdnaInfo
gbExtFile
gbLoaded
gbMiscDiff
gbSeq
gbStatus
gbWarn
gc5Base
geneName
genscan
gensc... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_ce6.rb | Ruby | mit | 19 | master | 2,182 | #!/usr/bin/env ruby
# C.Elegans ce6 spec generator
SPEC_FILE = "../spec/ce6_spec.rb"
KLASS = "Bio::Ucsc::Ce6"
TABLES = %w(
#25mersRepeats
t25mersRepeats
algBindGenic
algBindSites
all_est
all_mrna
author
blastSGPep01
blastSGRef01
cds
cell
chainCaeJap1
chainCaeJap1Link
chainCaePb2
chainCaePb2Link
chainCaeRem3
chainCaeR... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_bostau4.rb | Ruby | mit | 19 | master | 1,736 | #!/usr/bin/env ruby
# cow BosTau4 spec generator
SPEC_FILE = "../spec/bostau4_spec.rb"
KLASS = "Bio::Ucsc::BosTau4"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainCanFam2
chainCanFam2Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainOrnAna1
chainOrnAna1Link
chainOviAri1
chainOviAri1Link
chainSus... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_dromoj2.rb | Ruby | mit | 19 | master | 1,191 | #!/usr/bin/env ruby
# D. mojavensis DroMoj2 spec generator
SPEC_FILE = "../spec/dromoj2_spec.rb"
KLASS = "Bio::Ucsc::DroMoj2"
TABLES = %w(
all_mrna
author
blastDm2FB
cds
cell
chainDm2
chainDm2Link
chromInfo
description
development
gap
gbCdnaInfo
gbDelete_tmp
gbExtFile
gbLoaded
gbMiscDiff
gbSeq
gbStatus
gbWarn
gc5Base... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_mm9.rb | Ruby | mit | 19 | master | 18,379 | #!/usr/bin/env ruby
# Mouse mm9 spec generator
SPEC_FILE = "../spec/mm9_spec.rb"
KLASS = "Bio::Ucsc::Mm9"
TABLES = %w(
NIAGene
acembly
acemblyClass
acemblyPep
affyAllExonProbes
affyExonTissues
affyExonTissuesGs
affyExonTissuesGsExps
affyExonTissuesGsMedian
affyExonTissuesGsMedianDist
affyExonTissuesGsMedianExps
affyG... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_drogri1.rb | Ruby | mit | 19 | master | 1,142 | #!/usr/bin/env ruby
# D. grimshawi DroGri1 spec generator
SPEC_FILE = "../spec/drogri1_spec.rb"
KLASS = "Bio::Ucsc::DroGri1"
TABLES = %w(
author
blastDm2FB
cds
cell
chainDm2
chainDm2Link
chromInfo
description
development
gap
gbCdnaInfo
gbExtFile
gbLoaded
gbMiscDiff
gbSeq
gbStatus
gbWarn
gc5Base
geneName
genscan
gensc... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_equcab2.rb | Ruby | mit | 19 | master | 1,723 | #!/usr/bin/env ruby
# horse EquCab2 spec generator
SPEC_FILE = "../spec/equcab2_spec.rb"
KLASS = "Bio::Ucsc::EquCab2"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainCanFam2
chainCanFam2Link
chainGalGal3
chainGalGal3Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainMonDom5
chainMonDom5Link
chainO... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_orycun2.rb | Ruby | mit | 19 | master | 1,537 | #!/usr/bin/env ruby
# rabbit OryCun2 spec generator
SPEC_FILE = "../spec/orycun2_spec.rb"
KLASS = "Bio::Ucsc::OryCun2"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainCavPor3
chainCavPor3Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainMonDom5
chainMonDom5Link
chromInfo
ctgPos2
description
devel... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_caerem3.rb | Ruby | mit | 19 | master | 1,206 | #!/usr/bin/env ruby
# C. remanei CaeRem3 spec generator
SPEC_FILE = "../spec/caerem3_spec.rb"
KLASS = "Bio::Ucsc::CaeRem3"
TABLES = %w(
all_est
all_mrna
author
blastCe6SG
cds
cell
chainCe6
chainCe6Link
chromInfo
ctgPos2
description
development
estOrientInfo
gap
gbCdnaInfo
gbExtFile
gbLoaded
gbMiscDiff
gbSeq
gbStatus
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_cavpor3.rb | Ruby | mit | 19 | master | 1,672 | #!/usr/bin/env ruby
# guinea pig CavPor3 spec generator
SPEC_FILE = "../spec/cavpor3_spec.rb"
KLASS = "Bio::Ucsc::CavPor3"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainGalGal3
chainGalGal3Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainMonDom4
chainMonDom4Link
chainOryCun2
chainOryCun2Link
c... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_mondom5.rb | Ruby | mit | 19 | master | 2,168 | #!/usr/bin/env ruby
# opossum MonDom5 spec generator
SPEC_FILE = "../spec/mondom5_spec.rb"
KLASS = "Bio::Ucsc::MonDom5"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainAilMel1
chainAilMel1Link
chainCalJac3
chainCalJac3Link
chainCanFam2
chainCanFam2Link
chainDanRer5
chainDanRer5Link
chainEquCab2
chainEq... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_ponabe2.rb | Ruby | mit | 19 | master | 1,766 | #!/usr/bin/env ruby
# orangutan ponAbe2 spec generator
SPEC_FILE = "../spec/ponabe2_spec.rb"
KLASS = "Bio::Ucsc::PonAbe2"
TABLES = %w(
all_est
all_mrna
author
cds
cell
chainCalJac3
chainCalJac3Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainMonDom5
chainMonDom5Link
chainOrnAna1
chainOrnAna1Link
chainPanTro3
c... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_drosim1.rb | Ruby | mit | 19 | master | 1,246 | #!/usr/bin/env ruby
# D. simulans DroSim1 spec generator
SPEC_FILE = "../spec/drosim1_spec.rb"
KLASS = "Bio::Ucsc::DroSim1"
TABLES = %w(
all_est
all_mrna
author
blastDm2FB
cds
cell
chainDm3
chainDm3Link
chromInfo
description
development
dmRefGene
est
estOrientInfo
extFile
gap
gbCdnaInfo
gbDelete_tmp
gbExtFile
gbLoade... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_drovir2.rb | Ruby | mit | 19 | master | 1,220 | #!/usr/bin/env ruby
# D. virilis DroVir2 spec generator
SPEC_FILE = "../spec/drovir2_spec.rb"
KLASS = "Bio::Ucsc::DroVir2"
TABLES = %w(
all_est
all_mrna
author
blastDm2FB
cds
cell
chainDm2
chainDm2Link
chromInfo
description
development
estOrientInfo
gap
gbCdnaInfo
gbDelete_tmp
gbExtFile
gbLoaded
gbMiscDiff
gbSeq
gbSt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_braflo1.rb | Ruby | mit | 19 | master | 1,393 | #!/usr/bin/env ruby
# lancelet BraFlo1 spec generator
SPEC_FILE = "../spec/braflo1_spec.rb"
KLASS = "Bio::Ucsc::BraFlo1"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainGalGal3
chainGalGal3Link
chainHg18
chainHg18Link
chainMm9
chainMm9Link
chainPetMar1
chainPetMar1Link
chromInfo
description
development... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_xentro2.rb | Ruby | mit | 19 | master | 1,719 | #!/usr/bin/env ruby
# X. tropicalis XenTro2 spec generator
SPEC_FILE = "../spec/xentro2_spec.rb"
KLASS = "Bio::Ucsc::XenTro2"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainAnoCar1
chainAnoCar1Link
chainDanRer7
chainDanRer7Link
chainGalGal3
chainGalGal3Link
chainHg19
chainHg19Link
chainMm9
chainMm9Lin... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_saccer2.rb | Ruby | mit | 19 | master | 1,762 | #!/usr/bin/env ruby
# yeast sacser2 spec generator
SPEC_FILE = "../spec/saccer2_spec.rb"
KLASS = "Bio::Ucsc::SacCer2"
TABLES = %w(
t2micron_est
t2micron_gap
t2micron_gold
t2micron_intronEst
t2micron_mrna
all_est
all_mrna
author
blastHg18KG
cds
ceBlastTab
cell
choExpDistance
chromInfo
description
development
dmBlastTa... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_caejap1.rb | Ruby | mit | 19 | master | 1,207 | #!/usr/bin/env ruby
# C. japonica CaeJap1 spec generator
SPEC_FILE = "../spec/caejap1_spec.rb"
KLASS = "Bio::Ucsc::CaeJap1"
TABLES = %w(
all_est
all_mrna
author
blastCe6SG
cds
cell
chainCe6
chainCe6Link
chromInfo
ctgPos2
description
development
estOrientInfo
gap
gbCdnaInfo
gbExtFile
gbLoaded
gbMiscDiff
gbSeq
gbStatus... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_hgfixed.rb | Ruby | mit | 19 | master | 2,741 | #!/usr/bin/env ruby
# HgFixed spec generator
SPEC_FILE = "../spec/hgfixed_spec.rb"
KLASS = "Bio::Ucsc::HgFixed"
TABLES = %w(
affy10KDetails
affy120KDetails
affyExps
affyGenoDetails
arbFlyLifeAll
arbFlyLifeAllExps
arbFlyLifeAllRatio
arbFlyLifeMedian
arbFlyLifeMedianExps
arbFlyLifeMedianRatio
cghNci60Exps
cnpSharpCutof... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_ailmel1.rb | Ruby | mit | 19 | master | 1,383 | #!/usr/bin/env ruby
# panda AilMel1 spec generator
SPEC_FILE = "../spec/ailmel1_spec.rb"
KLASS = "Bio::Ucsc::AilMel1"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainCanFam2
chainCanFam2Link
chainFelCat4
chainFelCat4Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainMonDom5
chainMonDom5Link
chainR... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_visigene.rb | Ruby | mit | 19 | master | 1,168 | #!/usr/bin/env ruby
# VisiGene spec generator
SPEC_FILE = "../spec/visigene_spec.rb"
KLASS = "Bio::Ucsc::VisiGene"
TABLES = %w(
allele
antibody
antibodySource
bac
bodyPart
caption
cellSubtype
cellType
contributor
copyright
embedding
expressionLevel
expressionPattern
fileLocation
fixation
gene
geneSynonym
genotype
gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_canfam2.rb | Ruby | mit | 19 | master | 1,966 | #!/usr/bin/env ruby
# dog CanFam2 spec generator
SPEC_FILE = "../spec/canfam2_spec.rb"
KLASS = "Bio::Ucsc::CanFam2"
TABLES = %w(
all_bacends
all_est
all_mrna
author
bacEndPairs
blastHg18KG
cds
cell
chainAilMel1
chainAilMel1Link
chainBosTau4
chainBosTau4Link
chainCalJac3
chainCalJac3Link
chainEquCab2
chainEquCab2Link
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_cb3.rb | Ruby | mit | 19 | master | 1,313 | #!/usr/bin/env ruby
# C. briggsae Cb3 spec generator
SPEC_FILE = "../spec/cb3_spec.rb"
KLASS = "Bio::Ucsc::Cb3"
TABLES = %w(
all_est
all_mrna
author
blastCe6SG
cds
cell
chainCaePb1
chainCaePb1Link
chainCaeRem2
chainCaeRem2Link
chainCe6
chainCe6Link
chainPriPac1
chainPriPac1Link
chromInfo
description
development
est
e... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_oviari1.rb | Ruby | mit | 19 | master | 1,377 | #!/usr/bin/env ruby
# sheep oviAri1 spec generator
SPEC_FILE = "../spec/oviari1_spec.rb"
KLASS = "Bio::Ucsc::OviAri1"
TABLES = %w(
all_est
all_mrna
author
cds
cell
chainBosTau4
chainBosTau4Link
chainEquCab2
chainEquCab2Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainMonDom5
chainMonDom5Link
chromInfo
cpgIslan... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_aplcal1.rb | Ruby | mit | 19 | master | 1,214 | #!/usr/bin/env ruby
# sea hare AplCal1 spec generator
SPEC_FILE = "../spec/aplcal1_spec.rb"
KLASS = "Bio::Ucsc::AplCal1"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainHg19
chainHg19Link
chromInfo
cpgIslandExt
description
development
estOrientInfo
gap
gbCdnaInfo
gbExtFile
gbLoaded
gbMiscDiff
gbSeq
gbS... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_caljac3.rb | Ruby | mit | 19 | master | 1,605 | #!/usr/bin/env ruby
# marmoset CalJac3 spec generator
SPEC_FILE = "../spec/caljac3_spec.rb"
KLASS = "Bio::Ucsc::CalJac3"
TABLES = %w(
all_est
all_mrna
author
bacEndCalJac3Singles
bacEnds
cds
cell
chainCanFam2
chainCanFam2Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainMonDom5
chainMonDom5Link
chainPanTro2
cha... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_tetnig2.rb | Ruby | mit | 19 | master | 1,493 | #!/usr/bin/env ruby
# tetraodon TetNig2 spec generator
SPEC_FILE = "../spec/tetnig2_spec.rb"
KLASS = "Bio::Ucsc::TetNig2"
TABLES = %w(
all_mrna
author
blastHg18KG
cds
cell
chainDanRer7
chainDanRer7Link
chainFr2
chainFr2Link
chainGasAcu1
chainGasAcu1Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainOryLat2
chain... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_orylat2.rb | Ruby | mit | 19 | master | 1,751 | #!/usr/bin/env ruby
# medaka orylat2 spec generator
SPEC_FILE = "../spec/orylat2_spec.rb"
KLASS = "Bio::Ucsc::OryLat2"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainDanRer7
chainDanRer7Link
chainFr2
chainFr2Link
chainGasAcu1
chainGasAcu1Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainPetMar1
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_pantro3.rb | Ruby | mit | 19 | master | 1,561 | #!/usr/bin/env ruby
# chimp PanTro3 spec generator
SPEC_FILE = "../spec/pantro3_spec.rb"
KLASS = "Bio::Ucsc::PanTro3"
TABLES = %w(
all_est
all_mrna
author
cds
cell
chainCalJac3
chainCalJac3Link
chainCanFam2
chainCanFam2Link
chainDanRer7
chainDanRer7Link
chainEquCab2
chainEquCab2Link
chainGalGal3
chainGalGal3Link
chai... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_dm3.rb | Ruby | mit | 19 | master | 4,031 | #!/usr/bin/env ruby
# fruitfly dm3 spec generator
SPEC_FILE = "../spec/dm3_spec.rb"
KLASS = "Bio::Ucsc::Dm3"
TABLES = %w(
affyDrosDevSignal1
affyDrosDevSignal10
affyDrosDevSignal11
affyDrosDevSignal12
affyDrosDevSignal2
affyDrosDevSignal3
affyDrosDevSignal4
affyDrosDevSignal5
affyDrosDevSignal6
affyDrosDevSignal7
aff... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_apimel2.rb | Ruby | mit | 19 | master | 1,901 | #!/usr/bin/env ruby
# honey bee ApiMel2 spec generator
SPEC_FILE = "../spec/apimel2_spec.rb"
KLASS = "Bio::Ucsc::ApiMel2"
# Group10_chainDm2
# Group10_chainDm2Link
# Group11_chainDm2
# Group11_chainDm2Link
# Group12_chainDm2
# Group12_chainDm2Link
# Group13_chainDm2
# Group13_chainDm2Link
# Group14_chainDm2
# Group14... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_anogam1.rb | Ruby | mit | 19 | master | 1,220 | #!/usr/bin/env ruby
# Anopheles mosquito AnoGam1 spec generator
SPEC_FILE = "../spec/anogam1_spec.rb"
KLASS = "Bio::Ucsc::AnoGam1"
TABLES = %w(
all_est
all_mrna
anoEstExpressed
anoEstNcl
anoEstTcl
author
blastDm2FB
cds
cell
chainDm3
chainDm3Link
chromInfo
description
development
ensGene
ensGtp
ensPep
est
estOrientInf... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_pripac1.rb | Ruby | mit | 19 | master | 1,303 | #!/usr/bin/env ruby
# P. pacificus PriPac1 spec generator
SPEC_FILE = "../spec/pripac1_spec.rb"
KLASS = "Bio::Ucsc::PriPac1"
TABLES = %w(
all_est
all_mrna
author
blastCe6SG
cds
cell
chainCaePb1
chainCaePb1Link
chainCaeRem2
chainCaeRem2Link
chainCb3
chainCb3Link
chainCe6
chainCe6Link
chromInfo
ctgPos2
description
deve... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_droper1.rb | Ruby | mit | 19 | master | 1,143 | #!/usr/bin/env ruby
# D. persimilis DroPer1 spec generator
SPEC_FILE = "../spec/droper1_spec.rb"
KLASS = "Bio::Ucsc::DroPer1"
TABLES = %w(
author
blastDm2FB
cds
cell
chainDm3
chainDm3Link
chromInfo
description
development
gap
gbCdnaInfo
gbExtFile
gbLoaded
gbMiscDiff
gbSeq
gbStatus
gbWarn
gc5Base
geneName
genscan
gens... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_uniprot.rb | Ruby | mit | 19 | master | 1,049 | #!/usr/bin/env ruby
# UniPlot spec generator
SPEC_FILE = "../spec/uniprot_spec.rb"
KLASS = "Bio::Ucsc::UniProt"
TABLES = %w(
accToKeyword
accToTaxon
author
citation
citationRc
citationRp
comment
commentType
commentVal
commonName
description
displayId
extDb
extDbRef
feature
featureClass
featureId
featureType
gene
gene... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_taegut1.rb | Ruby | mit | 19 | master | 1,516 | #!/usr/bin/env ruby
# zebra finch TaeGut1 spec generator
SPEC_FILE = "../spec/taegut1_spec.rb"
KLASS = "Bio::Ucsc::TaeGut1"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainGalGal3
chainGalGal3Link
chainHg19
chainHg19Link
chromInfo
description
development
ensGene
ensGtp
ensPep
est
estOrientInfo
gap
gbCd... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_fr2.rb | Ruby | mit | 19 | master | 1,618 | #!/usr/bin/env ruby
# fugo Fr2 spec generator
SPEC_FILE = "../spec/fr2_spec.rb"
KLASS = "Bio::Ucsc::Fr2"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainDanRer7
chainDanRer7Link
chainGalGal3
chainGalGal3Link
chainGasAcu1
chainGasAcu1Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainOryLat2
chainO... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_droyak2.rb | Ruby | mit | 19 | master | 1,218 | #!/usr/bin/env ruby
# D. yakuba DroYak2 spec generator
SPEC_FILE = "../spec/droyak2_spec.rb"
KLASS = "Bio::Ucsc::DroYak2"
TABLES = %w(
all_est
all_mrna
author
blastDm2FB
cds
cell
chainDm3
chainDm3Link
chromInfo
contamination
description
development
est
estOrientInfo
gap
gbCdnaInfo
gbExtFile
gbLoaded
gbMiscDiff
gbSeq
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_susscr2.rb | Ruby | mit | 19 | master | 1,288 | #!/usr/bin/env ruby
# pig SusScr2 spec generator
SPEC_FILE = "../spec/susscr2_spec.rb"
KLASS = "Bio::Ucsc::SusScr2"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainBosTau4
chainBosTau4Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainMonDom5
chainMonDom5Link
chromInfo
cpgIslandExt
ctgPos2
descrip... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_caepb2.rb | Ruby | mit | 19 | master | 1,196 | #!/usr/bin/env ruby
# C. brenneri CaePb2 spec generator
SPEC_FILE = "../spec/caepb2_spec.rb"
KLASS = "Bio::Ucsc::CaePb2"
TABLES = %w(
all_est
all_mrna
author
blastCe6SG
cds
cell
chainCe6
chainCe6Link
chromInfo
ctgPos2
description
development
estOrientInfo
gap
gbCdnaInfo
gbExtFile
gbLoaded
gbMiscDiff
gbSeq
gbStatus
gb... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_rhemac2.rb | Ruby | mit | 19 | master | 1,765 | #!/usr/bin/env ruby
# rhesus mamaque rhemac2 spec generator
SPEC_FILE = "../spec/rhemac2_spec.rb"
KLASS = "Bio::Ucsc::RheMac2"
TABLES = %w(
all_est
all_mrna
author
cds
cell
chainCalJac3
chainCalJac3Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainMonDom5
chainMonDom5Link
chainPanTro2
chainPanTro2Link
chainPanT... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_felcat4.rb | Ruby | mit | 19 | master | 1,507 | #!/usr/bin/env ruby
# cat FelCat4 spec generator
SPEC_FILE = "../spec/felcat4_spec.rb"
KLASS = "Bio::Ucsc::FelCat4"
TABLES = %w(
all_est
all_mrna
author
blastHg18KG
cds
cell
chainAilMel1
chainAilMel1Link
chainCanFam2
chainCanFam2Link
chainHg19
chainHg19Link
chainMm9
chainMm9Link
chainMonDom5
chainMonDom5Link
chromInf... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_rn4.rb | Ruby | mit | 19 | master | 3,099 | #!/usr/bin/env ruby
# rat rn4 spec generator
SPEC_FILE = "../spec/rn4_spec.rb"
KLASS = "Bio::Ucsc::Rn4"
TABLES = %w(
affyAllExonProbes
affyExonTissues
affyExonTissuesGs
affyExonTissuesGsExps
affyExonTissuesGsMedian
affyExonTissuesGsMedianDist
affyExonTissuesGsMedianExps
affyRAE230
affyU34A
agilentCgh105a
agilentCgh1x... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_dp3.rb | Ruby | mit | 19 | master | 1,283 | #!/usr/bin/env ruby
# D. pseudoobscura Dp3 spec generator
SPEC_FILE = "../spec/dp3_spec.rb"
KLASS = "Bio::Ucsc::Dp3"
TABLES = %w(
all_est
all_mrna
author
blastDm2FB
cds
cell
chainDm3
chainDm3Link
chromInfo
description
development
est
estOrientInfo
fbGenscan
flyBase2004Xref
flyBaseGene
flyBasePep
gap
gbCdnaInfo
gbDele... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_galgal3.rb | Ruby | mit | 19 | master | 2,214 | #!/usr/bin/env ruby
# chiken GalGal3 spec generator
SPEC_FILE = "../spec/galgal3_spec.rb"
KLASS = "Bio::Ucsc::GalGal3"
TABLES = %w(
all_bacends
all_est
all_mrna
author
bacEndPairs
bgiCov
bgiSnp
blastHg18KG
caCondor454
cds
cell
chainAnoCar1
chainAnoCar1Link
chainBraFlo1
chainBraFlo1Link
chainCavPor3
chainCavPor3Link
c... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | devtools/spec_generator_droana2.rb | Ruby | mit | 19 | master | 1,177 | #!/usr/bin/env ruby
# D. ananassae DroAna2 spec generator
SPEC_FILE = "../spec/droana2_spec.rb"
KLASS = "Bio::Ucsc::DroAna2"
TABLES = %w(
all_mrna
author
blastDm2FB
cds
cell
chainDm3
chainDm3Link
chromInfo
description
development
gap
gbCdnaInfo
gbExtFile
gbLoaded
gbMiscDiff
gbSeq
gbStatus
gbWarn
gc5Base
geneMapper
ge... |
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