source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/multiz28waysummary_spec.rb | Ruby | mit | 19 | master | 479 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Multiz28waySummary" do
describe "#find_by_interval" do
context 'given range chr1:1-10,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiphelah3h4taf250_p0_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipHeLaH3H4TAF250_p0" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netmm9_spec.rb | Ruby | mit | 19 | master | 475 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetMm9" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1helac1s3signal_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1HeLaC1S3Signal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiprnaphela_f_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipRnapHela_f" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/cgapsage_spec.rb | Ruby | mit | 19 | master | 450 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::CgapSage" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/ccdsgene_spec.rb | Ruby | mit | 19 | master | 476 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::CcdsGene" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyaleaffyneutrnatransmap_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleAffyNeutRNATransMap" do
describe "#find_by_interval" do
context "given range chr11:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodestanfordchipsmoothedjurkatsp3_spec.rb | Ruby | mit | 19 | master | 520 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeStanfordChipSmoothedJurkatSp3" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snp130orthopt2pa2rm2_spec.rb | Ruby | mit | 19 | master | 494 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Snp130OrthoPt2Pa2Rm2" do
describe "#find_by_interval" do
context "given range chr1:1-15,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodestanfordpromotershct116_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeStanfordPromotersHCT116" do
describe "#find_by_interval" do
context "given range chr11:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/yalebertonetars_spec.rb | Ruby | mit | 19 | master | 467 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::YaleBertoneTars" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse(... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snp126exceptions_spec.rb | Ruby | mit | 19 | master | 484 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Snp126Exceptions" do
describe "#find_by_interval" do
context "given range chr1:1-2,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/multiz17waysummary_spec.rb | Ruby | mit | 19 | master | 477 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Multiz17waySummary" do
describe "#find_by_interval" do
context 'given range chr1:1-5,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInte... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsignalbaf170k562_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSignalBaf170K562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiphith3acgm06990_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipHitH3acGM06990" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdpihseasia_spec.rb | Ruby | mit | 19 | master | 484 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpIhsEAsia" do
describe "#find_by_interval" do
context "given range chr1:1-1,200,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/knownalt_spec.rb | Ruby | mit | 19 | master | 455 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KnownAlt" do
describe "#find_by_interval" do
context "given range chr1:1-5,000" do
it 'returns a result (r.chrom =="chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("c... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfullsoftberrypseudo_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullSoftberryPseudo" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodebufirstexonliver_spec.rb | Ruby | mit | 19 | master | 494 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeBuFirstExonLiver" do
describe "#find_by_interval" do
context "given range chr11:1-5,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chaindanrer5_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainDanRer5" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesh4kac4hr02_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesH4Kac4Hr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netponabe2_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetPonAbe2" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snp126orthopantro2rhemac2_spec.rb | Ruby | mit | 19 | master | 502 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Snp126orthoPanTro2RheMac2" do
describe "#find_by_interval" do
context "given range chr1:1-1,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyrnahl60signalhr08_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyRnaHl60SignalHr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1fetaltestissites_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1FetalTestisSites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodestanfordrtpcr_spec.rb | Ruby | mit | 19 | master | 489 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeStanfordRtPcr" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3hepg2cyto_spec.rb | Ruby | mit | 19 | master | 485 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3HepG2Cyto" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiphith3k4me2hela_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipHitH3K4me2HeLa" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesstricthish4hr02_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesStrictHisH4Hr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/refseqsummary_spec.rb | Ruby | mit | 19 | master | 408 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::RefSeqSummary" do
describe "#find_all_by_mrnaAcc" do
context 'given "NR_036941"' do
it "returens an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::RefSeqSummary.find... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalsirt1hr08_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalSirt1Hr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netmondom4_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetMonDom4" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodebufirstexonspleen_spec.rb | Ruby | mit | 19 | master | 496 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeBuFirstExonSpleen" do
describe "#find_by_interval" do
context "given range chr11:1-5,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hapmapsnpsjpt_spec.rb | Ruby | mit | 19 | master | 482 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HapmapSnpsJPT" do
describe "#find_by_interval" do
context "given range chr1:1-600,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdngheladmh3k4_p0_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdNgHeLaDmH3K4_p0" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/ensgtp_spec.rb | Ruby | mit | 19 | master | 420 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EnsGtp" do
describe "#find_by_gene" do
context 'given "ENSG00000215700"' do
it 'returns (r.protein == "ENSP00000383587")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::EnsGtp.find_by... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchipcenterh4achela_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipCenterH4acHeLa" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitesstat1helaifna_spec.rb | Ruby | mit | 19 | master | 514 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesStat1HelaIfna" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/ucsfmreseqbraincpg_spec.rb | Ruby | mit | 19 | master | 477 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::UcsfMreSeqBrainCpG" do
describe "#find_by_interval" do
context 'given range chr1:1-1,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInte... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeutexstagemychelapeaks_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUtexStageMycHelaPeaks" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchipcenterh3k4me1gm06990_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipCenterH3K4me1GM06990" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalsirt1hr00_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalSirt1Hr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/exaptedrepeats_spec.rb | Ruby | mit | 19 | master | 488 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ExaptedRepeats" do
describe "#find_by_interval" do
context "given range chr1:1-5,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/rnblasttab_spec.rb | Ruby | mit | 19 | master | 412 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::RnBlastTab" do
describe ".find_by_query" do
context 'given "uc009vjp.1"' do
it 'returns (r.target == "NM_001033897")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::RnBlastTab.find_by... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipstat1helamaskless36mer36bpsite_spec.rb | Ruby | mit | 19 | master | 538 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChIPSTAT1HeLaMaskLess36mer36bpSite" do
describe "#find_by_interval" do
context "given range chr11:1-5,000,000" do
it 'returns a record (r.chrom == "chr11")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3pc3_spec.rb | Ruby | mit | 19 | master | 473 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3PC3" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterva... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyrnahl60signalhr00_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyRnaHl60SignalHr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuppsalachiphnf4a_spec.rb | Ruby | mit | 19 | master | 494 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUppsalaChipHnf4a" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/polyadb_spec.rb | Ruby | mit | 19 | master | 452 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PolyaDb" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1tertbjsignal_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1TertBJSignal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/multiz28wayframes_spec.rb | Ruby | mit | 19 | master | 475 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Multiz28wayFrames" do
describe "#find_by_interval" do
context 'given range chr1:1-5,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInter... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/ucsfrnaseqbrainsmartcoverage_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::UcsfRnaSeqBrainSmartCoverage" do
describe "#find_by_interval" do
context 'given range chr1:1-500' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hgdpihsoceania_spec.rb | Ruby | mit | 19 | master | 488 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HgdpIhsOceania" do
describe "#find_by_interval" do
context "given range chr1:1-1,200,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiph3k27me3_spec.rb | Ruby | mit | 19 | master | 495 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipH3K27me3" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesh3k27me3hr02_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesH3K27me3Hr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3fragshelacyto_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3FragsHeLaCyto" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51k562signal_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51K562Signal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3fragsu87mg_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3FragsU87MG" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kiddeichlerdiscabc12_spec.rb | Ruby | mit | 19 | master | 496 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KiddEichlerDiscAbc12" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
s = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdnghelaach4_p0_peak_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdNgHeLaAcH4_p0_peak" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodepseudogeneucsc_spec.rb | Ruby | mit | 19 | master | 491 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodePseudogeneUcsc" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/phastcons44wayprimates_spec.rb | Ruby | mit | 19 | master | 485 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PhastCons44wayPrimates" do
describe "#find_by_interval" do
context 'given range chr1:1-1,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodestanfordchipk562sp3_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeStanfordChipK562Sp3" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencodegenepseudooct05_spec.rb | Ruby | mit | 19 | master | 497 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeGenePseudoOct05" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph4achela_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH4acHeLa" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuppsalachiph3acbut12h_spec.rb | Ruby | mit | 19 | master | 504 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUppsalaChipH3acBut12h" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesp300hr08_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesP300Hr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/jaxqtlpadded_spec.rb | Ruby | mit | 19 | master | 464 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::JaxQtlPadded" do
describe "#find_by_id" do
context 'given interval "chr1:1-10,000,000"' do
it 'returns (r.chrom === "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/acescan_spec.rb | Ruby | mit | 19 | master | 474 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Acescan" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/all_bacends_spec.rb | Ruby | mit | 19 | master | 464 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::All_bacends" do
describe "#find_by_inetrval" do
context "given range chr1:1-20,000" do
it 'returens a result (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.pa... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/lssnppdb_spec.rb | Ruby | mit | 19 | master | 412 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::LsSnpPdb" do
describe "#find_all_by_protID" do
context 'given "O60701"' do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::LsSnpP... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snparrayilluminahumanomni1_quad_spec.rb | Ruby | mit | 19 | master | 518 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::SnpArrayIlluminaHumanOmni1_Quad" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chaincaljac1_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainCalJac1" do
describe "#find_by_interval" do
context 'given range chrX:1-15,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60signalstrictp63_actd_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SignalStrictp63_ActD" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/transmapalnsplicedest_spec.rb | Ruby | mit | 19 | master | 473 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::TransMapSplicedEst" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.pars... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/refgene_spec.rb | Ruby | mit | 19 | master | 750 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::RefGene" do
describe "#find_by_interval" do
context "given range chr1:1-100,000" do
it "returens an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/mgcfullmrna_spec.rb | Ruby | mit | 19 | master | 456 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::MgcFullMrna" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsignalp65nhelatnfa_spec.rb | Ruby | mit | 19 | master | 514 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSignalP65nHelaTnfa" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/fox2clipseq_spec.rb | Ruby | mit | 19 | master | 453 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Fox2ClipSeq" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspupdsgp2u12_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspUpdSgp2U12" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesp300hr00_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesP300Hr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51fetalkidneysignal_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51FetalKidneySignal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsignalsmarca4hela_spec.rb | Ruby | mit | 19 | master | 512 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSignalSmarca4Hela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitesbaf155_spec.rb | Ruby | mit | 19 | master | 500 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesBaf155" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3acmolt4_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3acMolt4" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chaingasacu1_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainGasAcu1" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiph3k27me3suz12_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipH3K27me3Suz12" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfulljigsaw_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullJigsaw" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitespu1hr32_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesPu1Hr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51hepg2sites_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51HepG2Sites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/pgna12878_spec.rb | Ruby | mit | 19 | master | 770 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PgNA12878" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1placentasignal_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1PlacentaSignal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/tajdsnped_spec.rb | Ruby | mit | 19 | master | 478 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::TajdSnpEd" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/multiz28way_spec.rb | Ruby | mit | 19 | master | 463 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Multiz28way" do
describe "#find_by_interval" do
context 'given range chr1:1-5,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.pa... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodebufirstexontestis_spec.rb | Ruby | mit | 19 | master | 496 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeBuFirstExonTestis" do
describe "#find_by_interval" do
context "given range chr11:1-5,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/netanocar1_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetAnoCar1" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/phylop28wayplacmammal_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PhyloP28wayPlacMammal" do
describe "#find_by_interval" do
context 'given range chr1:1-5,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1ovarysites_spec.rb | Ruby | mit | 19 | master | 499 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1OvarySites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdnghelaach3_p30_peak_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdNgHeLaAcH3_p30_peak" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
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