metadata
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Dataset Card for filtered & cleaned cellfinder data
This data is the final clean/filter of the cellfinder data used for model training in our OTAR3088 project.
Dataset Description
Cellfinder annotated texts, sourced from https://www.informatik.hu-berlin.de/de/forschung/gebiete/wbi/resources/cellfinder/
Filters applied:
- Removal of "Anatomy" entities which are not fit for our use of "Anatomy" terms as "Tissue" equivalents
- Resolution of cases where a term is given multiple labels in data sets, resolved by choosing the mode label / failing that a list of priorities is used for the entity label that is given
- Drop entries of annotations which are outside of the entity types we care for, which are: "CellType", "CellLine" and "Anatomy"~Tissue
Dataset info
- Curated by: Christine Withers
- Funded by [optional]: Open Targets
- Shared by [optional]: [More Information Needed]
- Language(s) (NLP): English
- License: [More Information Needed]
Dataset Sources [optional]
- Source: (https://www.informatik.hu-berlin.de/de/forschung/gebiete/wbi/resources/cellfinder/)
- Paper: https://pubmed.ncbi.nlm.nih.gov/24304896/
Dataset Structure
BRAT