instance_id stringlengths 10 57 | file_changes listlengths 1 15 | repo stringlengths 7 53 | base_commit stringlengths 40 40 | problem_statement stringlengths 11 52.5k | patch stringlengths 251 7.06M |
|---|---|---|---|---|---|
SpikeInterface__spikeinterface-3094 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/spikeinterface/core/basesorting.py:BaseSorting.register_recording"
],
"edited_modules": [
"src/spikeinterface/core/basesorting.py:BaseSorting"
]
},
"file": "src/spi... | SpikeInterface/spikeinterface | 47dd3712245c752a4d1fe2c55cd71e88e492b51b | Standardise order of recording, sorting args
Hi all! I've noticed that for different functions which require both a recording and a sorting, the order in which these should be passed is not consistent. E.g. `si.create_sorting_analyzer(sorting, recording)` but `si.estimate_sparsity(recording, sorting)`
Not exactly hi... | diff --git a/src/spikeinterface/core/basesorting.py b/src/spikeinterface/core/basesorting.py
index fd68df9dd..d9a567ded 100644
--- a/src/spikeinterface/core/basesorting.py
+++ b/src/spikeinterface/core/basesorting.py
@@ -197,7 +197,7 @@ class BaseSorting(BaseExtractor):
self.get_num_segments() == recording... |
SpikeInterface__spikeinterface-3120 | [
{
"changes": {
"added_entities": [
"src/spikeinterface/core/baserecording.py:BaseRecording._get_t_starts",
"src/spikeinterface/core/baserecording.py:BaseRecording._get_time_vectors"
],
"added_modules": null,
"edited_entities": [
"src/spikeinterface/core/baserecord... | SpikeInterface/spikeinterface | 588ff5f066df594234242c556dc9afa005342e77 | Times not propagated by `.save_to_memory()`
I was a bit surprised to see that the following is possible:
```
rec = si.read_binary_folder(...)
rec1 = rec.save_to_memory()
print(rec.sample_index_to_time(0), rec1.sample_index_to_time(0))
# => 2451.763033333333, 0.0
```
I'm working around this by `rec1.set_times... | diff --git a/src/spikeinterface/core/baserecording.py b/src/spikeinterface/core/baserecording.py
index 9a9747bf0..0ea942667 100644
--- a/src/spikeinterface/core/baserecording.py
+++ b/src/spikeinterface/core/baserecording.py
@@ -498,24 +498,35 @@ class BaseRecording(BaseRecordingSnippets):
rs = self._recording... |
SpikeInterface__spikeinterface-3180 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/spikeinterface/core/base.py:BaseExtractor.save_to_folder"
],
"edited_modules": [
"src/spikeinterface/core/base.py:BaseExtractor"
]
},
"file": "src/spikeinterface/co... | SpikeInterface/spikeinterface | e4fa25abf4a949a31bdfebe7c868e393c11cfed3 | Unit aggregation should preserve unit ids.
Like https://github.com/SpikeInterface/spikeinterface/issues/2789 but for UnitAggregation. Currently it does not:
```python
from spikeinterface.core import generate_sorting
sorting1 = generate_sorting(num_units=3)
sorting1 = sorting1.rename_units(new_unit_ids=["unit1... | diff --git a/src/spikeinterface/core/base.py b/src/spikeinterface/core/base.py
index 8b037ad10..f3e300fff 100644
--- a/src/spikeinterface/core/base.py
+++ b/src/spikeinterface/core/base.py
@@ -7,6 +7,7 @@ import warnings
import weakref
import json
import pickle
+import os
import random
import string
from packagin... |
SpikeInterface__spikeinterface-3309 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/spikeinterface/curation/curation_format.py:convert_from_sortingview_curation_format_v0"
],
"edited_modules": [
"src/spikeinterface/curation/curation_format.py:convert_from_sortin... | SpikeInterface/spikeinterface | 694f8620e7e79cc914678bf2c8a3a7d70df3af29 | curation_dict from sortingview doesn't have 'mergeGroups' key
Hello,
I just updated Spikeinterface from 0.100.2 to 0.101.0 and am making the transition to using sorting analyzer class which has been pretty smooth for the most part but I'm getting an error related to sortingview_curation.
Here's my code:
```
sa... | diff --git a/src/spikeinterface/curation/curation_format.py b/src/spikeinterface/curation/curation_format.py
index babe7aac4..511abb780 100644
--- a/src/spikeinterface/curation/curation_format.py
+++ b/src/spikeinterface/curation/curation_format.py
@@ -92,13 +92,17 @@ def convert_from_sortingview_curation_format_v0(sor... |
SpikeInterface__spikeinterface-3347 | [
{
"changes": {
"added_entities": [
"src/spikeinterface/core/sortinganalyzer.py:AnalyzerExtension._default_run_info_dict",
"src/spikeinterface/core/sortinganalyzer.py:AnalyzerExtension.load_run_info",
"src/spikeinterface/core/sortinganalyzer.py:AnalyzerExtension._save_run_info"
... | SpikeInterface/spikeinterface | 740e7799c554387888afad655a10f4f3ace7f9dd | Sorting analyzer extensions don't know if they've been interrupted
Hi all — sometimes a sorting analyzer's computation of an extension is interrupted, either accidentally (i.e. a SLURM job times out), or manually (I want to change a parameter). Normally, the way one would deal with this, in a script, is to check if the... | diff --git a/src/spikeinterface/core/sortinganalyzer.py b/src/spikeinterface/core/sortinganalyzer.py
index 13b64664a..57c9e5f37 100644
--- a/src/spikeinterface/core/sortinganalyzer.py
+++ b/src/spikeinterface/core/sortinganalyzer.py
@@ -11,6 +11,7 @@ import weakref
import shutil
import warnings
import importlib
+fro... |
SpikeInterface__spikeinterface-3369 | [
{
"changes": {
"added_entities": [
"src/spikeinterface/core/sparsity.py:ChannelSparsity.from_amplitude"
],
"added_modules": null,
"edited_entities": [
"src/spikeinterface/core/sparsity.py:ChannelSparsity.from_best_channels",
"src/spikeinterface/core/sparsity.py:Ch... | SpikeInterface/spikeinterface | f64ad5f4609f3c0c6054595ba784073477d016fd | Non default Sparsity kwargs when creating SortingAnalyzer
I'd like to create a `SortingAnalyzer` object with sparsity computed from channel groups rather than the default setting. However, it seems sparsity arguments passed to `spikeinterface.core.create_sorting_analyzer()` are passed to `spikeinterface.core.estimate_s... | diff --git a/src/spikeinterface/core/sparsity.py b/src/spikeinterface/core/sparsity.py
index a38562ea2..fd613e1fc 100644
--- a/src/spikeinterface/core/sparsity.py
+++ b/src/spikeinterface/core/sparsity.py
@@ -1,6 +1,7 @@
from __future__ import annotations
import numpy as np
+import warnings
from .basesorting i... |
SpikeInterface__spikeinterface-3670 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/spikeinterface/postprocessing/principal_component.py:ComputePrincipalComponents.get_some_projections"
],
"edited_modules": [
"src/spikeinterface/postprocessing/principal_componen... | SpikeInterface/spikeinterface | 1ed860fe15ec32f0aba5e7b876821393e9e5d758 | PCA quality metrics crash when using "concatenated" mode
Computing PCA quality metrics crashes if PCs were calculated with `mode='concatenated'` :
```
analyzer.compute("principal_components",
mode='concatenated',
n_components=5,
dtype='float32')
```
Then :
```
ana... | diff --git a/src/spikeinterface/postprocessing/principal_component.py b/src/spikeinterface/postprocessing/principal_component.py
index 38ea6b382..dd3a8febd 100644
--- a/src/spikeinterface/postprocessing/principal_component.py
+++ b/src/spikeinterface/postprocessing/principal_component.py
@@ -260,7 +260,11 @@ class Comp... |
SpikeInterface__spikeinterface-3701 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/spikeinterface/extractors/mdaextractors.py:MdaSortingExtractor.__init__",
"src/spikeinterface/extractors/mdaextractors.py:MdaSortingExtractor.write_sorting"
],
"edited_modules": ... | SpikeInterface/spikeinterface | 64d253c46aa26ee2eb9519472c92bbaa0bf0e481 | Storing channel index from MDA sorting in MdaSortingExtractor for downstream use
I am using spikeinterface and NeuroConv to convert a firings.mda sorting file from an older version of MountainSort to an NWB file. Currently this creates an NWB Units table with spike times and unit labels from MountainSort, but the table... | diff --git a/src/spikeinterface/extractors/mdaextractors.py b/src/spikeinterface/extractors/mdaextractors.py
index d2886d9e7..c1fc1144d 100644
--- a/src/spikeinterface/extractors/mdaextractors.py
+++ b/src/spikeinterface/extractors/mdaextractors.py
@@ -180,6 +180,13 @@ class MdaRecordingSegment(BaseRecordingSegment):
... |
SpikeInterface__spikeinterface-3737 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/spikeinterface/comparison/basecomparison.py:MixinSpikeTrainComparison.__init__"
],
"edited_modules": [
"src/spikeinterface/comparison/basecomparison.py:MixinSpikeTrainComparison"... | SpikeInterface/spikeinterface | e1535daac114ad293cb0acdb555f1a96d797f038 | Compare multiple sorters
Hi, I have been trying to see if I could speed up the compare_multiple_sorters function (it has been taking a very long time to complete). I have tried changing the n_jobs parameter, but it seems to not have any effect? In every case I see only 1 CPU as active. I am running si version 0.102.0, ... | diff --git a/src/spikeinterface/comparison/basecomparison.py b/src/spikeinterface/comparison/basecomparison.py
index 3a39f08a7..e3f23726c 100644
--- a/src/spikeinterface/comparison/basecomparison.py
+++ b/src/spikeinterface/comparison/basecomparison.py
@@ -283,9 +283,10 @@ class MixinSpikeTrainComparison:
* n_j... |
SpikeInterface__spikeinterface-3778 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/spikeinterface/core/unitsaggregationsorting.py:UnitsAggregationSorting.__init__"
],
"edited_modules": [
"src/spikeinterface/core/unitsaggregationsorting.py:UnitsAggregationSortin... | SpikeInterface/spikeinterface | 526e308f3e01d8e653cfe6fc79c15e8c8bf08586 | `aggregate_units ` doesn't propagate properties when string lengths don't match
Similar bug to #3733
Suppose you have two sortings with the same property, whose labels are strings. The `dtype` is equal to `f"U{n}"` where `n` is the max length of any of the strings. When we do a type check here:
https://github.com/Sp... | diff --git a/src/spikeinterface/core/unitsaggregationsorting.py b/src/spikeinterface/core/unitsaggregationsorting.py
index 9eb37e31e..fa7810632 100644
--- a/src/spikeinterface/core/unitsaggregationsorting.py
+++ b/src/spikeinterface/core/unitsaggregationsorting.py
@@ -77,43 +77,44 @@ class UnitsAggregationSorting(BaseS... |
SpikeInterface__spikeinterface-3829 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/spikeinterface/core/channelsaggregationrecording.py:ChannelsAggregationRecording.__init__",
"src/spikeinterface/core/channelsaggregationrecording.py:aggregate_channels"
],
"edite... | SpikeInterface/spikeinterface | b8f7253b018d55c730e3cb096e17ff89339a5050 | Running into errors while trying to sort tetrode data by group
Hello, we are a new lab and are just starting our first few recordings. I wanted to get used to the spikeinterface environment, and so have been using it to load our data and attempt to sort it. However, I have been facing this issue which I could not reall... | diff --git a/src/spikeinterface/core/channelsaggregationrecording.py b/src/spikeinterface/core/channelsaggregationrecording.py
index 3947a0dec..079731379 100644
--- a/src/spikeinterface/core/channelsaggregationrecording.py
+++ b/src/spikeinterface/core/channelsaggregationrecording.py
@@ -14,7 +14,15 @@ class ChannelsAg... |
SpikeInterface__spikeinterface-961 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"spikeinterface/core/base.py:BaseExtractor.set_property"
],
"edited_modules": [
"spikeinterface/core/base.py:BaseExtractor"
]
},
"file": "spikeinterface/core/base.py"
... | SpikeInterface/spikeinterface | 9d7823d620386b634c56fbc8d4686f824690ccde | UnitsAggregationSorting fails to inherit property
Hi,
I saw in the `UnitsAggregationSorting` code that there is a copying of properties if they are consistent over all sortings.
However, look at the following code:
```python
sorting.annotate(name="Bonjour")
sorting.get_annotation("name")
> 'Bonjour'
sort... | diff --git a/spikeinterface/core/base.py b/spikeinterface/core/base.py
index 7775dfae9..c210cc4c5 100644
--- a/spikeinterface/core/base.py
+++ b/spikeinterface/core/base.py
@@ -24,6 +24,8 @@ class BaseExtractor:
"""
+ default_missing_property_values = {"f": np.nan, "O": None, "S": "", "U": ""}
+
# This... |
Starfish-develop__Starfish-147 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "Starfish/__init__.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"Starfish/grid_t... | Starfish-develop/Starfish | 42217c6b10ac215cff926ef8290bd25c11234e85 | Creating interpolator fails.
After making a HDF5 grid, and loading successfully the flux for combinations of parameters in the grid.
I tried to interpolate a spectrum:
`myHDF5 = HDF5Interface(filename=inputfile)
flux = myHDF5.load_flux(np.array([6200, 4.5, 0.0]))
myInterpolator = Interpolator(myHDF5)`
Which... | diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 4b4e685..e21f838 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,5 +1,5 @@
repos:
- repo: https://github.com/python/black
- rev: stable
+ rev: 22.3.0
hooks:
- id: black
diff --git a/Starfish/__init__.py b/S... |
SteadBytes__aocpy-13 | [
{
"changes": {
"added_entities": [
"aocpy/cli.py:set_cookie"
],
"added_modules": [
"aocpy/cli.py:set_cookie"
],
"edited_entities": null,
"edited_modules": null
},
"file": "aocpy/cli.py"
},
{
"changes": {
"added_entities": [
"aocpy... | SteadBytes/aocpy | 7dc93d4ba672699aba83918ebe9b1f5f3ff0e175 | Add CLI option to set cookie in `~/.config/aocpy/token`
As a user,
I want to set the cookie using cli command
So that I do not have to create the folders and token file myself.
Proposal:
`aocpy set-cookie <cookie>`
- Creates folders if they do not exists
- write `<cookie>` to token file | diff --git a/README.md b/README.md
index 7ffb74a..ccb3a6a 100644
--- a/README.md
+++ b/README.md
@@ -73,12 +73,12 @@ AoC puzzle inputs differ by user, requiring a browser cookie to determine the cu
- `$ aocpy begin -c <1234mycookie>`
- Configuration file:
- Paste the cookie into a file at `~/.config/aocpy/token`... |
StellarCN__py-stellar-base-380 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stellar_sdk/sep/stellar_web_authentication.py:read_challenge_transaction"
],
"edited_modules": [
"stellar_sdk/sep/stellar_web_authentication.py:read_challenge_transaction"
]
... | StellarCN/py-stellar-base | c353bdf449fdda0308cd5435b627fb111b18538e | Implement SEP-10 2.1.0 Support
## TL;DR
The SEP-10 protocol has been updated to relax the requirements of the single Manage Data operation included in SEP-10 challenge transactions, and **should be implemented by October 21st**. On this date the SDF will announce the SDK updates to Anchors and Wallets, urging them t... | diff --git a/stellar_sdk/sep/stellar_web_authentication.py b/stellar_sdk/sep/stellar_web_authentication.py
index 0d287b37..2ec477ac 100644
--- a/stellar_sdk/sep/stellar_web_authentication.py
+++ b/stellar_sdk/sep/stellar_web_authentication.py
@@ -49,7 +49,8 @@ def build_challenge_transaction(
:param server_secret:... |
StellarCN__py-stellar-base-422 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stellar_sdk/sep/stellar_web_authentication.py:build_challenge_transaction",
"stellar_sdk/sep/stellar_web_authentication.py:read_challenge_transaction",
"stellar_sdk/sep/stellar_web_authe... | StellarCN/py-stellar-base | 4aa7982ab5f3416ecdc4bc8920c6fa0decb180ee | SEP-10 v3.1 Changes (from the SDF)
## SEP-10 3.1 Support
### TL;DR
Implement the changes described the [SEP-10 3.1 commit](https://github.com/stellar/stellar-protocol/commit/6c8c9cf6685c85509835188a136ffb8cd6b9c11c).
This likely involves adding an optional argument to the SEP-10 utility functions for adding an addit... | diff --git a/stellar_sdk/sep/stellar_web_authentication.py b/stellar_sdk/sep/stellar_web_authentication.py
index 05b1f569..32315a29 100644
--- a/stellar_sdk/sep/stellar_web_authentication.py
+++ b/stellar_sdk/sep/stellar_web_authentication.py
@@ -40,6 +40,7 @@ def build_challenge_transaction(
server_secret: str,
... |
StellarCN__py-stellar-base-817 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stellar_sdk/scval.py:to_struct"
],
"edited_modules": [
"stellar_sdk/scval.py:to_struct"
]
},
"file": "stellar_sdk/scval.py"
}
] | StellarCN/py-stellar-base | 300dc1f6c2be64b8354dc8582f1ff5a2cbb4bb17 | Soroban - Failing to invoke function with struct parameter
```
stellar-sdk==9.0.0b0
```
I deployed [this contract](https://github.com/bp-ventures/lightecho-stellar-oracle/blob/328e897bb69ea194d642540584bb4c94362bbc8e/oracle-onchain/sep40/contract/src/contract.rs) which has this function inside it:
```
fn add_p... | diff --git a/stellar_sdk/scval.py b/stellar_sdk/scval.py
index 418a6d5e..2a3c9dbb 100644
--- a/stellar_sdk/scval.py
+++ b/stellar_sdk/scval.py
@@ -624,8 +624,11 @@ def to_struct(data: Dict[str, stellar_xdr.SCVal]) -> stellar_xdr.SCVal:
:param data: The dict value to convert.
:return: A new :class:`stellar_sdk... |
SteveEwell__python-ldap-filter-8 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"ldap_filter/parser.py:Grammar"
]
},
"file": "ldap_filter/parser.py"
}
] | SteveEwell/python-ldap-filter | d4534c20ef824129ca0219363dbcb2c583cecfae | Incorrect handling of ! in string parse
Hello,
first of all, thanks for recently updating the project! Good to see that it is still being maintained!
I would like to report an issue that we saw using the parse function of the library. It appears that the handling of a ! in an attributeValue is incorrect, resultin... | diff --git a/docs/parser.peg b/docs/parser.peg
index f3ac31f..4c15118 100644
--- a/docs/parser.peg
+++ b/docs/parser.peg
@@ -29,7 +29,7 @@ grammar LDAP
LDAP_OID <- (DIGIT+ ("." DIGIT+)*) %return_oid_type
options <- (option ";" options) %return_string / option
option <- (AttrTypeChars+) %return_string
- ... |
StevenLooman__async_upnp_client-62 | [
{
"changes": {
"added_entities": [
"async_upnp_client/client.py:UpnpDevice.service_id"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"async_upnp_client/client.py:UpnpDevice"
]
},
"file": "async_upnp_client/client.py"
}
] | StevenLooman/async_upnp_client | e76f7f3296c8351106625b6d013e0620fdf16f7e | Ability to get `UpnpService` by id rather than type?
On Linn devices, the manufacturer may increase the service version in their description document. For example the service description on a recent firmware for the volume service is:
```xml
<service>
<serviceType>urn:av-openhome-org:s... | diff --git a/CHANGES.rst b/CHANGES.rst
index 91ef03d..e023450 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -4,6 +4,7 @@ Changes
0.16.1 (unreleased)
- Don't double-unescape action responses (#50)
+- Add `UpnpDevice.service_id()` to get service by service_id. (@bazwilliams)
0.16.0 (2021-03-30)
diff --git a/asyn... |
StevenLooman__python-didl-lite-14 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"didl_lite/didl_lite.py:from_xml_el"
],
"edited_modules": [
"didl_lite/didl_lite.py:from_xml_el"
]
},
"file": "didl_lite/didl_lite.py"
}
] | StevenLooman/python-didl-lite | 2b0d7f0ab20202c7ae049931ec1e68e5853ef379 | WiiM Pro issue
Hi,
I have a WiiM Pro and I've noticed that it doesn't quite comply with the UPnP standard in that it doesn't structure the DIDL-Lite event messages correctly. The upnp:class element is in the wrong place in the schema. It should be inside the item element but for some reason it is before the item... | diff --git a/CHANGES.rst b/CHANGES.rst
index 0ee3e22..221cd82 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -1,7 +1,7 @@
Changes
=======
-1.4.0 (unreleased)
+1.4.0 (2023-12-16)
- Treat upnp:class as case-insensitive when in non-strict mode (@chishm)
- Raise a `DidlLiteException` when upnp:class is invalid when ... |
Stewori__pytypes-37 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pytypes/type_util.py:resolve_fw_decl"
],
"edited_modules": [
"pytypes/type_util.py:resolve_fw_decl"
]
},
"file": "pytypes/type_util.py"
}
] | Stewori/pytypes | 5736ecd2878aca5c78df44aeeaef13303cbfa5f2 | NoneType' object is not iterable in resolve_fw_decl
```python
>>> import typing
>>> from pytypes import type_util
>>> T = typing.TypeVar('T')
>>> class Foo(typing.Generic[T]):
... pass
...
>>> type_util.resolve_fw_decl(Foo)
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
TypeError:... | diff --git a/pytypes/type_util.py b/pytypes/type_util.py
index 13c991e..f6227c8 100644
--- a/pytypes/type_util.py
+++ b/pytypes/type_util.py
@@ -900,7 +900,7 @@ def resolve_fw_decl(in_type, module_name=None, globs=None, level=0):
for in_tp in args])
ret = resolve_fw_decl(res, None, globs)[1] o... |
Stewori__pytypes-38 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pytypes/type_util.py:_deep_type"
],
"edited_modules": [
"pytypes/type_util.py:_deep_type"
]
},
"file": "pytypes/type_util.py"
}
] | Stewori/pytypes | 152a2218bfa1b96ae5d866542ee4ad148b1b7b5d | Frozenset seems to not be equal to set?
```python
>>> import typing
>>> from pytypes import type_util
>>> type_util._isinstance(frozenset({1, 2, 'a', None, 'b'}), typing.AbstractSet[typing.Union[str, int, None]])
False
>>> type_util._isinstance({1, 2, 'a', None, 'b'}, typing.AbstractSet[typing.Union[str, int, type... | diff --git a/pytypes/type_util.py b/pytypes/type_util.py
index f6227c8..976f96f 100644
--- a/pytypes/type_util.py
+++ b/pytypes/type_util.py
@@ -22,10 +22,10 @@ import typing
import collections
from inspect import isfunction, ismethod, isclass, ismodule
try:
- from backports.typing import Tuple, Dict, List, Set, ... |
Stewori__pytypes-47 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pytypes/typelogger.py:combine_argtype"
],
"edited_modules": [
"pytypes/typelogger.py:combine_argtype"
]
},
"file": "pytypes/typelogger.py"
}
] | Stewori/pytypes | f8e2f14786872f0e2e17507139a4e72be58a1102 | TypeError: isinstance expected 2 arguments, got 1
Running [Usage example with decorator](https://github.com/Stewori/pytypes#usage-example-with-decorator) in readme gave following error for me.
```
Traceback (most recent call last):
File "/tmp/tmp.py", line 31, in <module>
pytypes.dump_cache()
NameError: na... | diff --git a/pytypes/typelogger.py b/pytypes/typelogger.py
index 078b521..3b3c774 100644
--- a/pytypes/typelogger.py
+++ b/pytypes/typelogger.py
@@ -146,7 +146,7 @@ def combine_argtype(observations):
additional unification effort (e.g. can apply PEP 484 style numeric tower).
"""
assert len(observations) ... |
Stewori__pytypes-98 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pytypes/typechecker.py:typechecked_module"
],
"edited_modules": [
"pytypes/typechecker.py:typechecked_module"
]
},
"file": "pytypes/typechecker.py"
}
] | Stewori/pytypes | befcedde8cea9b189c643f905c2b7ad180f27f8e | typechecked(string) should have more consistent return type
Currently if you call `typechecked` on a string module name, it has case-by-case behavior to sometimes return the original string and sometimes return the resolved module:
```python
typechecked('requests') → <module 'requests'>
typechecked('requests') → 're... | diff --git a/pytypes/typechecker.py b/pytypes/typechecker.py
index a0cd92b..b6b4342 100644
--- a/pytypes/typechecker.py
+++ b/pytypes/typechecker.py
@@ -964,15 +964,19 @@ def typechecked_module(md, force_recursive = False):
"""
if not pytypes.checking_enabled:
return md
+ # Save input to return or... |
StingraySoftware__HENDRICS-105 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"hendrics/efsearch.py:_common_main",
"hendrics/efsearch.py:main_accelsearch"
],
"edited_modules": [
"hendrics/efsearch.py:_common_main",
"hendrics/efsearch.py:main_acc... | StingraySoftware/HENDRICS | 8728fe650ba320f11eea6c285085bd92f53e0dc3 | HENaccelsearch and --delta-z argument
Command HENaccelsearch used with fractional value of --delta-z gives the following error:
HENaccelsearch --fmin 0.33 --fmax 0.37 --delta-z 0.5 Mur19_xmm_epn_det04_ev.nc --nproc 4 --interbin
/home/gianluca/stingray/lib64/python3.6/site-packages/hendrics/efsearch.py:1681: UserWa... | diff --git a/docs/scripts/cli.rst b/docs/scripts/cli.rst
index b582d67..89b89d7 100644
--- a/docs/scripts/cli.rst
+++ b/docs/scripts/cli.rst
@@ -48,7 +48,7 @@ HENaccelsearch
--fmax FMAX Maximum frequency to search, in Hz
--nproc NPROC Number of processors to use
--zmax ZMAX ... |
StingraySoftware__HENDRICS-94 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"hendrics/fspec.py:calc_pds",
"hendrics/fspec.py:main"
],
"edited_modules": [
"hendrics/fspec.py:calc_pds",
"hendrics/fspec.py:main"
]
},
"file": "hendri... | StingraySoftware/HENDRICS | dab7f6642673eee794965413801a5da30a46a431 | Use new API for covariance spectrum in HENvarenergy | diff --git a/hendrics/fold.py b/hendrics/fold.py
index e585006..26dfbc9 100644
--- a/hendrics/fold.py
+++ b/hendrics/fold.py
@@ -276,7 +276,6 @@ def get_TOAs_from_events(
# BAD!BAD!BAD!
# [[Pay attention to time reference here.
# We are folding wrt pepoch, and calculating TOAs wrt start]]
-
... |
StingraySoftware__HENDRICS-97 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"hendrics/calibrate.py:read_calibration"
],
"edited_modules": [
"hendrics/calibrate.py:read_calibration"
]
},
"file": "hendrics/calibrate.py"
},
{
"changes": {
... | StingraySoftware/HENDRICS | b95b6b5b36e1fc5cc38be5847c59a082dcee5b9e | Tests are failing with MemoryError or Sigkill.
We need to make quicker tests, in particular for the very slow efsearch ones.
https://github.com/StingraySoftware/HENDRICS/runs/1804391756?check_suite_focus=true
This one fails with SIGKILL after having run for 20+ minutes
https://github.com/StingraySoftware/HENDRICS... | diff --git a/hendrics/calibrate.py b/hendrics/calibrate.py
index 46ddf09..559a772 100644
--- a/hendrics/calibrate.py
+++ b/hendrics/calibrate.py
@@ -76,7 +76,7 @@ def read_calibration(pis, rmf_file=None):
the one given by default_nustar_rmf() is used.
"""
calp, calEmin, calEmax = read_rmf(rmf_file)
-... |
StingraySoftware__stingray-468 | [
{
"changes": {
"added_entities": [
"stingray/events.py:EventList.change_mjdref",
"stingray/events.py:EventList.shift"
],
"added_modules": null,
"edited_entities": [
"stingray/events.py:EventList.join"
],
"edited_modules": [
"stingray/events.py:... | StingraySoftware/stingray | ecf062aec83c25ddfcd4a17b13dc86e579b81b2a | Allow merging event lists from different instruments
Need to have some `change_mjdref` method in `EventList`, similar to the one in `Lightcurve`. | diff --git a/stingray/events.py b/stingray/events.py
index 8c998d4a..e5df3659 100644
--- a/stingray/events.py
+++ b/stingray/events.py
@@ -297,6 +297,10 @@ class EventList(object):
simon("One of the event lists you are concatenating is empty.")
other.time = np.asarray([])
+ # Toleranc... |
StingraySoftware__stingray-501 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stingray/lightcurve.py:Lightcurve.__init__"
],
"edited_modules": [
"stingray/lightcurve.py:Lightcurve"
]
},
"file": "stingray/lightcurve.py"
}
] | StingraySoftware/stingray | 7a60030569c472b9beae72012970b047f22ab8d5 | Docstring improvement request
https://github.com/StingraySoftware/stingray/blob/e3a8eea835a035e4a307e8cfde06d212c7cf3925/stingray/lightcurve.py#L30-L31
It would be great if this docstring said something about what the assumed units were for these times (e.g. is it expecting seconds or MJDs?, or other?), and whether ... | diff --git a/stingray/lightcurve.py b/stingray/lightcurve.py
index 41f8c240..467be5fa 100644
--- a/stingray/lightcurve.py
+++ b/stingray/lightcurve.py
@@ -27,8 +27,11 @@ class Lightcurve(object):
Parameters
----------
- time: iterable
- A list or array of time stamps for a light curve
+ time: I... |
StingraySoftware__stingray-518 | [
{
"changes": {
"added_entities": [
"stingray/events.py:EventList.to_astropy_timeseries",
"stingray/events.py:EventList.from_astropy_timeseries"
],
"added_modules": null,
"edited_entities": [
"stingray/events.py:EventList.__init__",
"stingray/events.py:Even... | StingraySoftware/stingray | e9662344cda8e4a0ea97be55d82159558ef05ef0 | Need to refresh I/O to ascii objects (and maybe the other formats too)
A lot has changed in our code and dependencies since @haroonrashid235 's work, and we need to rethink our I/O infrastructure. In particular, the roundtrip-to-ascii test of an event list is failing in recent version of Astropy.
Instead of just patch... | diff --git a/setup.cfg b/setup.cfg
index 242f3651..0bab447c 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -31,6 +31,7 @@ console_scripts =
all =
scipy
matplotlib
+ tbb
numba
jplephem
emcee
@@ -42,6 +43,8 @@ all =
pint-pulsar
zarr
numcodecs
+ pyyaml
+
test =
pytest<6
... |
StingraySoftware__stingray-521 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stingray/events.py:EventList.__init__"
],
"edited_modules": [
"stingray/events.py:EventList"
]
},
"file": "stingray/events.py"
},
{
"changes": {
"added_en... | StingraySoftware/stingray | 8295a7bd5ed444bcf01c8102d50760ec6eb8fa4e | Improve performance of Lightcurve for astropy.time.Time objects
Right now, it looks like we *can* use `Lightcurve.make_lightcurve` on `astropy.time.Time` objects, but for reasons I don't understand that's vastly slower than sticking in a numpy array. It would be useful to check why that is, and speed up that operation. | diff --git a/stingray/events.py b/stingray/events.py
index d8ebf954..af92100e 100644
--- a/stingray/events.py
+++ b/stingray/events.py
@@ -15,7 +15,7 @@ from .filters import get_deadtime_mask
from .gti import append_gtis, check_separate, cross_gtis
from .io import read, write
from .lightcurve import Lightcurve
-from... |
StingraySoftware__stingray-531 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stingray/crossspectrum.py:AveragedCrossspectrum.__init__",
"stingray/crossspectrum.py:AveragedCrossspectrum._make_auxil_pds",
"stingray/crossspectrum.py:AveragedCrossspectrum._make_segme... | StingraySoftware/stingray | df18e7c137db2221b419c360453fe72843283796 | `_isattribute` in `io.py` not general enough?
I am moderately concerned that our `_isattribute(data)` function in `io.py is not general enough.
This function checks whether the data is a single number or an array, by running `isinstance` for `numpy.ndarray` and `list`.
My feeling is that `isinstance` is perhaps ... | diff --git a/setup.cfg b/setup.cfg
index 2200bd09..06301011 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -34,7 +34,7 @@ all =
tbb
numba
jplephem
- emcee>=3.0.0
+ emcee
statsmodels
corner
lightcurve
@@ -64,6 +64,10 @@ doctest_plus = enabled
text_file_format = rst
addopts = --doctest-rs... |
StingraySoftware__stingray-579 | [
{
"changes": {
"added_entities": [
"stingray/powerspectrum.py:Powerspectrum.modulation_upper_limit"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"stingray/powerspectrum.py:Powerspectrum"
]
},
"file": "stingray/powerspectrum.py... | StingraySoftware/stingray | 24f1784752d6792c74680408bae82bd38d4d2051 | Calculate signal upper limits from power spectra
It would be useful if the various PowerSpectrum objects could identify the highest peak in the spectrum (within some frequency range) and calculate detection thresholds, as well as signal upper limits (e.g. following [Vaughan et al. 1994](https://ui.adsabs.harvard.edu/ab... | diff --git a/CHANGELOG.rst b/CHANGELOG.rst
index 9460c449..371f4488 100644
--- a/CHANGELOG.rst
+++ b/CHANGELOG.rst
@@ -1,15 +1,8 @@
Changelog
=========
-Not Yet Released
-----------------
-
-`Full list of changes`__
-
-__ https://github.com/StingraySoftware/stingray/compare/v0.3...main
-
-v0.3 (2021-05-31)
--------... |
StingraySoftware__stingray-620 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stingray/lightcurve.py:Lightcurve.__getitem__"
],
"edited_modules": [
"stingray/lightcurve.py:Lightcurve"
]
},
"file": "stingray/lightcurve.py"
}
] | StingraySoftware/stingray | e736acd21b007cee35b30bec4cf62b78ae8539e4 | The slice of Lightcurve does not preserve the err_dist | diff --git a/stingray/lightcurve.py b/stingray/lightcurve.py
index b41efa94..d707cf2a 100644
--- a/stingray/lightcurve.py
+++ b/stingray/lightcurve.py
@@ -728,8 +728,12 @@ class Lightcurve(object):
new_gti = cross_two_gtis(new_gti, new_gt1)
new_gti = cross_two_gtis(self.gti, new_gti)
- ... |
StingraySoftware__stingray-623 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stingray/fourier.py:normalize_leahy_from_variance"
],
"edited_modules": [
"stingray/fourier.py:normalize_leahy_from_variance"
]
},
"file": "stingray/fourier.py"
}
] | StingraySoftware/stingray | e736acd21b007cee35b30bec4cf62b78ae8539e4 | Leahy normalization for err_dist == "gauss" and 0 error bars should just break | diff --git a/stingray/fourier.py b/stingray/fourier.py
index 27b09bf7..5b1dda05 100644
--- a/stingray/fourier.py
+++ b/stingray/fourier.py
@@ -355,7 +355,16 @@ def normalize_leahy_from_variance(unnorm_power, variance, n_bin):
True
>>> np.isclose(pdsnorm[1:n_bin//2].mean(), poisson_level(norm="leahy"), rtol=0.... |
StingraySoftware__stingray-624 | [
{
"changes": {
"added_entities": [
"stingray/crossspectrum.py:Crossspectrum._initialize_from_any_input",
"stingray/crossspectrum.py:Crossspectrum._initialize_empty"
],
"added_modules": null,
"edited_entities": [
"stingray/crossspectrum.py:Crossspectrum.__init__",
... | StingraySoftware/stingray | 9670ecdb032db5c678ead67bd7c8ae533f00e3f9 | Check from_lc_iterable and from_lightcurve for a single light curve | diff --git a/stingray/crossspectrum.py b/stingray/crossspectrum.py
index 23458c14..26b5c9f1 100644
--- a/stingray/crossspectrum.py
+++ b/stingray/crossspectrum.py
@@ -497,10 +497,9 @@ class Crossspectrum(object):
Other Parameters
----------------
- gti: 2-d float array
- ``[[gti0_0, gti0_1], [gti1... |
StingraySoftware__stingray-631 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stingray/powerspectrum.py:Powerspectrum.modulation_upper_limit"
],
"edited_modules": [
"stingray/powerspectrum.py:Powerspectrum"
]
},
"file": "stingray/powerspectrum.py... | StingraySoftware/stingray | 16ae8dc9c5630a17ba7dd2a0ecbf189db38be4ae | Upper limits: add case with norm different from Leahy
See powerspectrum.py:339 | diff --git a/stingray/powerspectrum.py b/stingray/powerspectrum.py
index 18a72819..d2474331 100755
--- a/stingray/powerspectrum.py
+++ b/stingray/powerspectrum.py
@@ -337,6 +337,10 @@ class Powerspectrum(Crossspectrum):
See `stingray.stats.power_upper_limit`, `stingray.stats.amplitude_upper_limit`
f... |
StingraySoftware__stingray-634 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stingray/crosscorrelation.py:CrossCorrelation.__init__",
"stingray/crosscorrelation.py:CrossCorrelation._make_corr"
],
"edited_modules": [
"stingray/crosscorrelation.py:Cross... | StingraySoftware/stingray | 16ae8dc9c5630a17ba7dd2a0ecbf189db38be4ae | Cross and Auto-correlation normalisation
Hi,
I'm not entirely sure the auto and cross-correlation functions returned by Stingray are normalised, as the output seems to depend on the amplitude of the input light-curves. I think it might be good to include an option, such that the returned correlation functions are =1... | diff --git a/stingray/crosscorrelation.py b/stingray/crosscorrelation.py
index 36bb81ad..0b238162 100644
--- a/stingray/crosscorrelation.py
+++ b/stingray/crosscorrelation.py
@@ -39,6 +39,11 @@ class CrossCorrelation(object):
See the relevant ``scipy`` documentation [scipy-docs]_
for more details.
+... |
StingraySoftware__stingray-635 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stingray/powerspectrum.py:DynamicalPowerspectrum.__init__"
],
"edited_modules": [
"stingray/powerspectrum.py:DynamicalPowerspectrum"
]
},
"file": "stingray/powerspectru... | StingraySoftware/stingray | 16ae8dc9c5630a17ba7dd2a0ecbf189db38be4ae | DynamicalPowerspectrum does not accept event lists
This is inconsistent with the other cross/power spectra behavior. | diff --git a/stingray/powerspectrum.py b/stingray/powerspectrum.py
index 18a72819..652a1c19 100755
--- a/stingray/powerspectrum.py
+++ b/stingray/powerspectrum.py
@@ -467,7 +467,7 @@ class Powerspectrum(Crossspectrum):
silent : bool, default False
Silence the progress bars
gti: [[gti0_0, ... |
StingraySoftware__stingray-643 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "stingray/bispectrum.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modu... | StingraySoftware/stingray | 4e694cbafdb87e862e614e9c6eb2d75046b13b9e | pyfftw3 warning occurs three times
When importing Stingray, it throws the "pyfftw3 not installed, using built-in scipy fft" warning 3 times: once in fourier.py, once in bispectrum.py, and once in crosscorrelation.py. It would probably be better to only throw it once in fourier.py so as to not overwhelm the user with tr... | diff --git a/stingray/bispectrum.py b/stingray/bispectrum.py
index 693207ff..c19221d3 100644
--- a/stingray/bispectrum.py
+++ b/stingray/bispectrum.py
@@ -5,16 +5,11 @@ from scipy.linalg import toeplitz
import warnings
import matplotlib.pyplot as plt
-try:
- from pyfftw.interfaces.scipy_fft import fftshift, fft2... |
StingraySoftware__stingray-797 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stingray/crossspectrum.py:Crossspectrum._initialize_from_any_input",
"stingray/crossspectrum.py:crossspectrum_from_time_array",
"stingray/crossspectrum.py:crossspectrum_from_timeseries"
... | StingraySoftware/stingray | d47c95b42f1c1697b1a4207ff64e2970418756b9 | Bug in `Powerspectrum` when GTI is shorter than light curve?
I have a data set where the GTIs are slightly shorter than the data in the FITS file. When I create a light curve and then try to use `Powerspectrum`, I get an AssertionError that no GTIs are longer than `segment_size`. I think this is a bug where `Powerspect... | diff --git a/CHANGELOG.rst b/CHANGELOG.rst
index 7c1a92c1..ecf83e1e 100644
--- a/CHANGELOG.rst
+++ b/CHANGELOG.rst
@@ -32,7 +32,7 @@ Bug Fixes
- Various bug fixes in DynamicalPowerspectrum, on event loading and time rebinning (`#779 <https://github.com/StingraySoftware/stingray/pull/779>`__)
- Fix issue with the Pois... |
Stranger6667__Flask-Postmark-9 | [
{
"changes": {
"added_entities": [
"flask_postmark/core.py:Postmark._get_app"
],
"added_modules": null,
"edited_entities": [
"flask_postmark/core.py:Postmark.client"
],
"edited_modules": [
"flask_postmark/core.py:Postmark"
]
},
"file": "f... | Stranger6667/Flask-Postmark | a717b345eb0a59aa10fcc5464dfd3b8d9e151824 | Don't store app unless you fall back to it
In `__init__`, you set `self.app = app`, but you never use this value. The pattern for this is to fall back to it if `current_app` is not set, as a convenience to not need an app context when not using deferred init. Some devs prefer to exclude that and only allow `with app.ap... | diff --git a/docs/changelog.rst b/docs/changelog.rst
index e39741d..25e60ab 100644
--- a/docs/changelog.rst
+++ b/docs/changelog.rst
@@ -10,6 +10,7 @@ Added
~~~~~
- Register the extension on the app. `#6`_
+- Use ``self.app`` as a fallback. `#5`_
0.1.0 - 2017-05-11
------------------
@@ -20,3 +21,4 @@ Added
... |
Stranger6667__postmarker-125 | [
{
"changes": {
"added_entities": [
"postmarker/models/messages.py:BaseMessage.get",
"postmarker/models/messages.py:OutboundMessageManager.get",
"postmarker/models/messages.py:InboundMessageManager.get"
],
"added_modules": null,
"edited_entities": [
"postma... | Stranger6667/postmarker | 604005f5a384995207ffb53e6de2b8f3fa2b38db | Initialize inbound/outbound message in `get_details`
And probably rename method to ``get`` | diff --git a/docs/changelog.rst b/docs/changelog.rst
index 2ab7edc..208173f 100644
--- a/docs/changelog.rst
+++ b/docs/changelog.rst
@@ -11,6 +11,12 @@ Added
- Short-circuit send of empty batches in `Django` backend. `#123`_
+Changed
+~~~~~~~
+
+- ``OutboundMessageManager.get_details`` and ``InboundMessageManager.... |
Stranger6667__postmarker-138 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"postmarker/core.py:PostmarkClient.__init__",
"postmarker/core.py:PostmarkClient.session",
"postmarker/core.py:PostmarkClient._call"
],
"edited_modules": [
"postmarker... | Stranger6667/postmarker | 62cc043528a344477ee4b8117e08865c52aa50fe | Configurable resend on fail | diff --git a/docs/changelog.rst b/docs/changelog.rst
index 067a7e1..fd2198f 100644
--- a/docs/changelog.rst
+++ b/docs/changelog.rst
@@ -10,6 +10,7 @@ Added
~~~~~
- ``message`` property for ``Bounce``, ``Delivery`` and ``Open`` classes to access corresponding ``OutboundMessage`` instance. `#119`_
+- An ability to c... |
Stranger6667__postmarker-191 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "setup.py"
},
{
"changes": {
"added_entities": [
"src/postmarker/models/emails.py:EmailTemplate.__init__"
],
"added_modules":... | Stranger6667/postmarker | c42f1e3cc9ea91b9a20f5a9cf840f4330e2dee38 | send_with_template won't allow alias
Referring to #150
When I try to send an email using a template alias,
`postmark.emails.send_with_template(TemplateAlias=alias, TemplateModel=model, To=sendto, From=efrom)`
I get the following response:
`TypeError: send_with_template() missing 1 required positional argument... | diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 3be8879..db668a2 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -53,7 +53,7 @@ jobs:
strategy:
matrix:
os: [ubuntu-latest, windows-latest]
- python: [3.5, 3.6, 3.7, 3.8, 3.9.0-rc.1, py... |
Stranger6667__postmarker-196 | [
{
"changes": {
"added_entities": [
"src/postmarker/models/emails.py:EmailTemplateBatch.__init__",
"src/postmarker/models/emails.py:EmailTemplateBatch.__len__",
"src/postmarker/models/emails.py:EmailTemplateBatch.as_dict",
"src/postmarker/models/emails.py:EmailTemplateBatch.... | Stranger6667/postmarker | f46d0eb9ce5ea9d2199d2360dc310cf0b840f23c | Add support for batchWithTemplates
https://postmarkapp.com/developer/api/templates-api#send-batch-with-templates | diff --git a/docs/emails.rst b/docs/emails.rst
index b0b7dc3..22fb0d7 100644
--- a/docs/emails.rst
+++ b/docs/emails.rst
@@ -202,3 +202,12 @@ Batches are available via the :py:meth:`~postmarker.models.emails.EmailManager.E
For now, batches expose a very limited interface - only :py:meth:`~postmarker.models.emails.Em... |
Stranger6667__pyanyapi-22 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "pyanyapi/_compat.py"
},
{
"changes": {
"added_entities": [
"pyanyapi/interfaces.py:BaseInterface.maybe_strip"
],
"added_modu... | Stranger6667/pyanyapi | e5b7aadff6d02eac82e27cb4ad1f8bc9a4fb2eb0 | Add option to strip results
At parser level, False by default | diff --git a/README.rst b/README.rst
index b01d832..35babdf 100644
--- a/README.rst
+++ b/README.rst
@@ -31,7 +31,7 @@ Usage
-----
Library provides an ability to create API over various content.
-Currently there are bundled tools to work with HTML, XML, JSON.
+Currently there are bundled tools to work with HTML, XM... |
Stranger6667__pyanyapi-33 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pyanyapi/interfaces.py:XPathInterface.execute_method"
],
"edited_modules": [
"pyanyapi/interfaces.py:XPathInterface"
]
},
"file": "pyanyapi/interfaces.py"
}
] | Stranger6667/pyanyapi | 433dc8263c6c346d772120ad6f402714eb95c72a | Improve children syntax
As we discussed =D
Add supporting for childrens parse for every parent element
Example settings:
```python
class IMDBParser(HTMLParser):
settings = {
'films_blocks': {
'base': '//div[@class="media"]',
'children': {
'title': '/h4'... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 016a9b7..ecfdb61 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,6 +5,7 @@ History
----------------
* Fixed `lxml` installation on PyPy (#34).
+* Add support for subparsers (#32).
0.5.3 - 30.10.2015
----------------
diff --git a/README.rst b/README.rst
index ad5... |
Stranger6667__pyanyapi-42 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pyanyapi/interfaces.py:YAMLInterface.perform_parsing"
],
"edited_modules": [
"pyanyapi/interfaces.py:YAMLInterface"
]
},
"file": "pyanyapi/interfaces.py"
}
] | Stranger6667/pyanyapi | aebee636ad26f387850a6c8ab820ce4aac3f9adb | YAMLParser method is vulnerable
from pyanyapi import YAMLParser
YAMLParser({'test': 'container > test'}).parse('!!python/object/apply:os.system ["calc.exe"]').test
Hi, there is a vulnerability in YAMLParser method in Interfaces.py, please see PoC above. It can execute arbitrary python commands resulting in command... | diff --git a/.travis.yml b/.travis.yml
index 1975b26..b7b5b14 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -1,17 +1,30 @@
language: python
python:
- 3.5
-env:
- - TOX_ENV=py26
- - TOX_ENV=py27
- - TOX_ENV=py32
- - TOX_ENV=py33
- - TOX_ENV=py34
- - TOX_ENV=py35
- - TOX_ENV=pypy
- - TOX_ENV=pypy3
- - JYTHO... |
Stratoscale__skipper-164 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"skipper/git.py:get_hash"
],
"edited_modules": [
"skipper/git.py:get_hash"
]
},
"file": "skipper/git.py"
}
] | Stratoscale/skipper | 26e65ac0956d19f4f4a73a95d9547039c746a6b2 | can't build skipper (skipper build cmd) with v2.0.0 and v2.0.1
See $TOPIC.
I get:
# skipper build
```python
WARNING:root:*** Uncommitted changes present - Build container version might be outdated ***
[skipper] Building image: assisted-service-build
INFO:skipper:Building image: assisted-service-build
Traceba... | diff --git a/.gitignore b/.gitignore
index 089cb66..281342a 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,6 @@
+.vscode
+**__pycache__**
+**.pytest_cache**
*.egg-info
*.pyc
.cache
diff --git a/skipper/git.py b/skipper/git.py
index daa02c6..5098114 100644
--- a/skipper/git.py
+++ b/skipper/git.py
@@ -16,7 +16,7... |
Stratoscale__skipper-175 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"skipper/config.py:_interpolate_env_vars"
],
"edited_modules": [
"skipper/config.py:_interpolate_env_vars"
]
},
"file": "skipper/config.py"
},
{
"changes": {
... | Stratoscale/skipper | deef68eefdaefde54c1b20bbb8b494bbefa721ed | Fails to tag skipper build in git subdir
```=> => naming to docker.io/library/jenkins-tools:none```
```bash
[ilia@fedora jenkins-tools]$ skipper build jenkins-tools
WARNING:root:*** Not working in a git repository ***
[skipper] Building image: jenkins-tools
INFO:skipper:Building image: jenkins-tools
[+] Buildin... | diff --git a/README.md b/README.md
index ed5f41c..c7d432e 100644
--- a/README.md
+++ b/README.md
@@ -42,11 +42,28 @@ export LANG="en_US.UTF-8"
## Note for Linux Users with Docker
-If you run on Linux and use Docker without sudo, Skipper will create a dedicated user inside the build container with both root and doc... |
Stratoscale__skipper-182 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"skipper/cli.py:push"
],
"edited_modules": [
"skipper/cli.py:push"
]
},
"file": "skipper/cli.py"
},
{
"changes": {
"added_entities": null,
"added_mod... | Stratoscale/skipper | 239346bfa99b5cb2dce71de3c7d19235885e717c | Move docker config to another folder | diff --git a/.gitignore b/.gitignore
index 281342a..51a36a2 100644
--- a/.gitignore
+++ b/.gitignore
@@ -16,3 +16,4 @@ venv
MANIFEST
reports
**/RCS/**
+.venv
\ No newline at end of file
diff --git a/.pylintrc b/.pylintrc
index 156aeab..b29eff3 100644
--- a/.pylintrc
+++ b/.pylintrc
@@ -270,6 +270,9 @@ ignore-imports... |
Stratoscale__skipper-185 | [
{
"changes": {
"added_entities": [
"skipper/runner.py:get_docker_config_volume_suffix"
],
"added_modules": [
"skipper/runner.py:get_docker_config_volume_suffix"
],
"edited_entities": [
"skipper/runner.py:handle_volumes_bind_mount"
],
"edited_modu... | Stratoscale/skipper | 9e010ce914ea0411e9e6299525841f8a1ac880ea | Fix buildx for linux hosts | diff --git a/skipper/runner.py b/skipper/runner.py
index 5cd63bc..029054e 100644
--- a/skipper/runner.py
+++ b/skipper/runner.py
@@ -147,9 +147,10 @@ def handle_volumes_bind_mount(docker_cmd, homedir, volumes, workspace):
f'{homedir}/.gitconfig:{homedir}/.gitconfig:ro'])
# required for docke... |
SweBarre__sps-19 | [
{
"changes": {
"added_entities": [
"src/sps/cache.py:lookup_product"
],
"added_modules": [
"src/sps/cache.py:lookup_product"
],
"edited_entities": [
"src/sps/cache.py:save",
"src/sps/cache.py:lookup"
],
"edited_modules": [
"src/sp... | SweBarre/sps | 5dfc2aef4915ef7930ab4d9bd1e11d11931b267d | change cache functionallity
Change the way the cache file is working to be able to handle other types of cached data
example is making it possible to cache information for patch search #14 | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 72bd41d..5b0d703 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -11,6 +11,7 @@ All notable changes will be documented in this file.
- --version/-v option
### Changed
+- changed default cache file name to ~/.cache/sps_cache.json
- Product/Package headings in README.rs... |
SweBarre__sps-20 | [
{
"changes": {
"added_entities": [
"src/sps/cache.py:age"
],
"added_modules": [
"src/sps/cache.py:age"
],
"edited_entities": [
"src/sps/cache.py:save",
"src/sps/cache.py:load"
],
"edited_modules": [
"src/sps/cache.py:save",
... | SweBarre/sps | 55efee497a0ee0aa351c08d584c21b2ef723c7ca | warn when cache is old
Add the warning when cache is not updated for a long time.
Was accidentally removed when code was refactored | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 5b0d703..5c13e99 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,6 +3,7 @@ All notable changes will be documented in this file.
## [Unreleased]
### Added
+- cache age check
- --sort-table/-S option to product/package output
- --no-header/-H option to product/packa... |
SwissDataScienceCenter__renku-python-2345 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"renku/core/models/git.py:GitURL.__attrs_post_init__"
],
"edited_modules": [
"renku/core/models/git.py:GitURL"
]
},
"file": "renku/core/models/git.py"
},
{
"chan... | SwissDataScienceCenter/renku-python | b8b124b1142852d7856a63dab81f5a2b865a7c9f | create project IRI based on project slug
Currently we URL encode the project name to create the project @id, like https://renku-ci-gr-738.dev.renku.ch/projects/jakub.chrobasik/test%25202021-09-14%252015-59-30. But for downstream applications, using the project slug would be better, as it can be directly resolved in the... | diff --git a/renku/core/models/git.py b/renku/core/models/git.py
index 2a44884e..84859474 100644
--- a/renku/core/models/git.py
+++ b/renku/core/models/git.py
@@ -26,7 +26,7 @@ from urllib.parse import urlparse
import attr
from renku.core import errors
-from renku.core.utils.scm import is_ascii
+from renku.core.uti... |
SylphAI-Inc__AdalFlow-288 | [
{
"changes": {
"added_entities": [
"adalflow/adalflow/components/memory/memory.py:Memory.call",
"adalflow/adalflow/components/memory/memory.py:Memory.add_dialog_turn"
],
"added_modules": null,
"edited_entities": [
"adalflow/adalflow/components/memory/memory.py:Mem... | SylphAI-Inc/AdalFlow | e750721c4eaa1d87159a329c6f6a9f8d74c7062b | Component Memory is Missing the required 'call' method
**Describe the bug**
The adalflow.components.memory.memory.Memory class seems to have been left unfinished without a call method.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to https://github.com/SylphAI-Inc/AdalFlow/blob/main/use_cases/question_... | diff --git a/adalflow/adalflow/components/memory/memory.py b/adalflow/adalflow/components/memory/memory.py
index a25ab2b5..f0819701 100644
--- a/adalflow/adalflow/components/memory/memory.py
+++ b/adalflow/adalflow/components/memory/memory.py
@@ -1,23 +1,77 @@
-"""Memory for user-assistant conversations. [Not completed... |
SymbiFlow__FPGA-Tool-Performance-Visualization-Library-17 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"ftpvl/fetchers.py:HydraFetcher._download"
],
"edited_modules": [
"ftpvl/fetchers.py:HydraFetcher"
]
},
"file": "ftpvl/fetchers.py"
}
] | SymbiFlow/FPGA-Tool-Performance-Visualization-Library | 2c06f09c80ce8fda7d82176a212de10c3d2b589a | HydraFetcher unable to fetch meta.json of older builds
The current hydrafetcher assumes that `meta.json` is the only build product when fetching it from Hydra. Thus, it fetches the `meta.json` file from the following link:
```python
"https://hydra.vtr.tools/build/{build_num}/download/1/meta.json"
```
This assum... | diff --git a/ftpvl/fetchers.py b/ftpvl/fetchers.py
index d054f65..489026a 100644
--- a/ftpvl/fetchers.py
+++ b/ftpvl/fetchers.py
@@ -114,17 +114,47 @@ class HydraFetcher(Fetcher):
raise IndexError(f"Invalid eval_num: {self.eval_num}")
build_nums = evals_json["evals"][self.eval_num]["builds"]
- ... |
SymbiFlow__FPGA-Tool-Performance-Visualization-Library-24 | [
{
"changes": {
"added_entities": [
"ftpvl/fetchers.py:HydraFetcher._check_legacy_icebreaker"
],
"added_modules": null,
"edited_entities": [
"ftpvl/fetchers.py:HydraFetcher._preprocess"
],
"edited_modules": [
"ftpvl/fetchers.py:HydraFetcher"
]
... | SymbiFlow/FPGA-Tool-Performance-Visualization-Library | 0d5464c63006ae08e299e2aba15968d584bab1b7 | Legacy Icestorm Processor
As of August 1st, [fpga-tool-perf issue #190](https://github.com/SymbiFlow/fpga-tool-perf/issues/190) to correct the reported frequency of icestorm boards has been resolved. Now, all boards correctly report frequency in hertz.
However, this does not retroactively change fpga-tool-perf evalu... | diff --git a/ftpvl/fetchers.py b/ftpvl/fetchers.py
index e70bc9d..1e9559b 100644
--- a/ftpvl/fetchers.py
+++ b/ftpvl/fetchers.py
@@ -1,4 +1,5 @@
""" Fetchers are responsible for ingesting and standardizing data for future processing. """
+from datetime import datetime
import json
from typing import Any, Dict, List
... |
T4rk1n__precept-24 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"precept/_configs.py:TomlConfigSerializer.dump",
"precept/_configs.py:ConfigProperty.__get__"
],
"edited_modules": [
"precept/_configs.py:TomlConfigSerializer",
"prece... | T4rk1n/precept | 14b4438a56ce56ca3164a692f5a3f965e6d99125 | [toml-config] Config with a default of type bool fail to dump
If a config default is of type bool and has a comment with less than 40 characters, it will throw an error when dumping the config using the `dump-configs` command.
```
File "precept/_configs.py", line 224, in dump
section[key].comment(prop.comme... | diff --git a/.pylintrc b/.pylintrc
index 415b4c5..945108d 100644
--- a/.pylintrc
+++ b/.pylintrc
@@ -152,7 +152,8 @@ disable=print-statement,
no-member,
not-callable,
import-outside-toplevel,
- super-with-arguments
+ super-with-arguments,
+ too-many-nested-blocks
# Ena... |
TACC__agavepy-62 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"agavepy/agave.py:Agave.save_configs",
"agavepy/agave.py:Agave.clients_create"
],
"edited_modules": [
"agavepy/agave.py:Agave"
]
},
"file": "agavepy/agave.py"
... | TACC/agavepy | 08b6bb088b95b0c71c9404b220df1b9d0915b770 | Improve the way the users interact with multiple tenants/users/clients
Issue #53 addresses a new format to store credentials. The introduced format makes it possible to switch between multiple tenants.
However, users who have admin capabilities in agave may have multiple accounts and/or may have different oauth client... | diff --git a/Makefile b/Makefile
index 174afb5..43a069c 100644
--- a/Makefile
+++ b/Makefile
@@ -55,7 +55,7 @@ shell: build # Start a shell inside the build environment.
$(DOCKER_RUN_AGAVECLI) bash
tests:
- pytest -v --cache-clear tests/
+ pytest -vv --cache-clear tests/
tests-py2:
- python2 -m pytest -v tests
... |
TAXIIProject__libtaxii-247 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"libtaxii/common.py:parse",
"libtaxii/common.py:parse_xml_string",
"libtaxii/common.py:stringify_content"
],
"edited_modules": [
"libtaxii/common.py:parse",
"l... | TAXIIProject/libtaxii | c8e9c9bb67b32b3b7d05fa07b98df9b721246b04 | Blind SSRF vulnerability
When the content that starts with `http://` is passed to libtaxii's `parse` method, the library executes HTTP GET request, even though `no_network` is set to `True` on the XML parser.
Executing
```python
from libtaxii.common import parse
parse("http://test-domain.local?junkdata")
```
wi... | diff --git a/.gitignore b/.gitignore
index 1375def..5bcdcd6 100644
--- a/.gitignore
+++ b/.gitignore
@@ -5,6 +5,7 @@ build/
dist/
libtaxii.egg-info/
venv/
+.pytest_cache
.tox
output.txt
libtaxii/test/output/
diff --git a/libtaxii/common.py b/libtaxii/common.py
index 96fca12..9ceb33b 100644
--- a/libtaxii/common.p... |
TDAmeritrade__stumpy-1001 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "docs/conf.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stumpy/aampi.py:aampi._... | TDAmeritrade/stumpy | fb9a1254f6fba773aa50e0bf99407b90eb98b39c | Speed Up STUMPI Update
STUMPI `.update()` is reasonably fast but @NimaSarajpoor [was able to speed it even more](https://github.com/TDAmeritrade/stumpy/discussions/924#discussioncomment-9901868)!
We should take a closer look and see if there is further refactoring/enhancement that could be had. | diff --git a/docs/conf.py b/docs/conf.py
index 9c8b140..88b69bd 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -236,3 +236,6 @@ myst_enable_extensions = [
"dollarmath",
"tasklist",
]
+
+# Notebook cell execution timeout; defaults to 30.
+nb_execution_timeout = -1
diff --git a/docs/pull_request_template.md b... |
TDAmeritrade__stumpy-1015 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stumpy/aamp_motifs.py:aamp_motifs"
],
"edited_modules": [
"stumpy/aamp_motifs.py:aamp_motifs"
]
},
"file": "stumpy/aamp_motifs.py"
},
{
"changes": {
"adde... | TDAmeritrade/stumpy | 3077d0ddfb315464321dc86f8ec3bf2cab9ce3b1 | _motifs max_matches=None bug
When finding motifs, the function encounters a bug when `max_matches` is set to `None` to not restrict the number of matches. If the `max_matches` argument is set to `None` for `stumpy.motifs`, it assigns `max_matches = np.inf` before passing to `_motifs` which then tries to slice the `quer... | diff --git a/stumpy/aamp_motifs.py b/stumpy/aamp_motifs.py
index 0d5f67d..c7a852f 100644
--- a/stumpy/aamp_motifs.py
+++ b/stumpy/aamp_motifs.py
@@ -268,7 +268,7 @@ def aamp_motifs(
m = T.shape[-1] - P.shape[-1] + 1
excl_zone = int(np.ceil(m / config.STUMPY_EXCL_ZONE_DENOM))
if max_matches is None: # pr... |
TDAmeritrade__stumpy-1070 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stumpy/cache.py:_clear",
"stumpy/cache.py:clear",
"stumpy/cache.py:_get_cache",
"stumpy/cache.py:_save",
"stumpy/cache.py:save"
],
"edited_modules": [
... | TDAmeritrade/stumpy | 82ecd5110a39e36c9dfbc6bb8698c6381e790c6f | Wrong Numba Cache Directory
@NimaSarajpoor [Had asked](https://github.com/TDAmeritrade/stumpy/issues/1066#issuecomment-2617797555):
> I think we should open an issue for https://github.com/TDAmeritrade/stumpy/pull/1067#discussion_r1930017203. This can help us to track it separately. What do you think?
This is the co... | diff --git a/stumpy/cache.py b/stumpy/cache.py
index fbaf352..6c35520 100644
--- a/stumpy/cache.py
+++ b/stumpy/cache.py
@@ -15,6 +15,7 @@ CACHE_WARNING = "Caching `numba` functions is purely for experimental purposes "
CACHE_WARNING += "and should never be used or depended upon as it is not supported! "
CACHE_WARNIN... |
TDAmeritrade__stumpy-288 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stumpy/core.py:_mass_absolute"
],
"edited_modules": [
"stumpy/core.py:_mass_absolute"
]
},
"file": "stumpy/core.py"
}
] | TDAmeritrade/stumpy | 4adf60adba3782043a007c01c5785496548ea308 | mass_absolute returns NaN for some negative time-series
I found this while playing with the PAMAP dataset. Haven't been able to reproduce this with random numbers, so here's the relevant data and code.
```python
Q = np.array([-13.09, -14.1 , -15.08, -16.31, -17.13, -17.5 , -18.07, -18.07,
-17.48, -16.24, -14.... | diff --git a/stumpy/core.py b/stumpy/core.py
index dba5e87..96bb7d3 100644
--- a/stumpy/core.py
+++ b/stumpy/core.py
@@ -861,7 +861,9 @@ def _mass_absolute(Q_squared, T_squared, QT):
`See Mueen's Absolute Algorithm for Similarity Search \
<https://www.cs.unm.edu/~mueen/MASS_absolute.m>`__
"""
- return... |
TDAmeritrade__stumpy-583 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stumpy/aamp_motifs.py:aamp_match"
],
"edited_modules": [
"stumpy/aamp_motifs.py:aamp_match"
]
},
"file": "stumpy/aamp_motifs.py"
},
{
"changes": {
"added_... | TDAmeritrade/stumpy | d2884510304eea876bd05bf64cecc31f2fa07105 | stumpy.match bug with parameters: Sliding mean and Sliding standard deviation
### Discussed in https://github.com/TDAmeritrade/stumpy/discussions/581
<div type='discussions-op-text'>
<sup>Originally posted by **brunopinos31** March 31, 2022</sup>
I have a bug when i try to use the stumpy.match function with para... | diff --git a/stumpy/aamp_motifs.py b/stumpy/aamp_motifs.py
index 5fc6cb6..1e00c52 100644
--- a/stumpy/aamp_motifs.py
+++ b/stumpy/aamp_motifs.py
@@ -380,6 +380,8 @@ def aamp_match(
if T_subseq_isfinite is None:
T, T_subseq_isfinite = core.preprocess_non_normalized(T, m)
+ if len(T_subseq_isfinite.sha... |
TDAmeritrade__stumpy-649 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stumpy/scraamp.py:_compute_PI"
],
"edited_modules": [
"stumpy/scraamp.py:_compute_PI"
]
},
"file": "stumpy/scraamp.py"
},
{
"changes": {
"added_entities":... | TDAmeritrade/stumpy | 2ec04e1723204c81b34ebccdde642917f1271c12 | A few issues in `scrump`
So, I have been reading the module `stumpy/scrump.py` and I think we should revise the code to address the following issues:
(I can address them in the current PR #595 or new PR)
(1)
https://github.com/TDAmeritrade/stumpy/blob/2ec04e1723204c81b34ebccdde642917f1271c12/tests/naive.py#L1418
... | diff --git a/stumpy/scraamp.py b/stumpy/scraamp.py
index 2cf89be..c6baaba 100644
--- a/stumpy/scraamp.py
+++ b/stumpy/scraamp.py
@@ -88,8 +88,10 @@ def _compute_PI(
-------
None
"""
- l = T_B.shape[0] - m + 1
- p_norm_profile = np.empty(l)
+ l = T_A.shape[0] - m + 1 # length of matrix profile
+... |
TDAmeritrade__stumpy-655 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stumpy/aamp_motifs.py:_aamp_motifs",
"stumpy/aamp_motifs.py:aamp_match"
],
"edited_modules": [
"stumpy/aamp_motifs.py:_aamp_motifs",
"stumpy/aamp_motifs.py:aamp_match... | TDAmeritrade/stumpy | bd1beb43283f792a37aee87055c152e3aa69b702 | Incorrect descriptions in Docstrings
I have been reading the module `mpdist` and I noticed:
* The description of the output of `_mpdist_vect` is missing from its docstring
* The description of `μ_Q` and `σ_Q` (in `_mpdist_vect`) are not correct. I think they should be `numpy.ndarrays` not `float`.
* The descriptio... | diff --git a/stumpy/aamp_motifs.py b/stumpy/aamp_motifs.py
index 2c6def8..ddd94f4 100644
--- a/stumpy/aamp_motifs.py
+++ b/stumpy/aamp_motifs.py
@@ -97,7 +97,7 @@ def _aamp_motifs(
motif_distances = []
candidate_idx = np.argmin(P[-1])
- for i in range(l):
+ for _ in range(l):
if len(motif_ind... |
TDAmeritrade__stumpy-656 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stumpy/aamp_motifs.py:_aamp_motifs",
"stumpy/aamp_motifs.py:aamp_match"
],
"edited_modules": [
"stumpy/aamp_motifs.py:_aamp_motifs",
"stumpy/aamp_motifs.py:aamp_match... | TDAmeritrade/stumpy | bd1beb43283f792a37aee87055c152e3aa69b702 | Refactor stumpy.motifs.match
As discussed in #653, it might be a good idea to refactor `stumpy.motifs.match` and `stumpy.aamp_motifs.aamp_match`. we are going to add function `_find_matches(D, some-other-params)` to `stumpy/core.py`. It takes 1D distance profile and return the matches. We can then use this function to ... | diff --git a/stumpy/aamp_motifs.py b/stumpy/aamp_motifs.py
index 2c6def8..ddd94f4 100644
--- a/stumpy/aamp_motifs.py
+++ b/stumpy/aamp_motifs.py
@@ -97,7 +97,7 @@ def _aamp_motifs(
motif_distances = []
candidate_idx = np.argmin(P[-1])
- for i in range(l):
+ for _ in range(l):
if len(motif_ind... |
TDAmeritrade__stumpy-789 | [
{
"changes": {
"added_entities": [
"stumpy/core.py:fix_isconstant_isfinite_conflicts",
"stumpy/core.py:_find_incompatible_args"
],
"added_modules": [
"stumpy/core.py:fix_isconstant_isfinite_conflicts",
"stumpy/core.py:_find_incompatible_args"
],
"edi... | TDAmeritrade/stumpy | c7d53216d8422810f026bd0f2fb0ce571d58cac5 | Add `T_A_subseq_isconstant` and `T_B_subseq_isconstant` Parameters to API
Currently, STUMPY has trouble cleanly differentiating between a "constant subsequence" and a subsequence with a very, very small standard deviation. By adding `T_A_subseq_isconstant` and `T_B_subseq_isconstant` parameters to our API, we can ignor... | diff --git a/stumpy/core.py b/stumpy/core.py
index 287c0cc..4d13b9c 100644
--- a/stumpy/core.py
+++ b/stumpy/core.py
@@ -121,7 +121,7 @@ def non_normalized(non_norm, exclude=None, replace=None):
The desired z-normalized/non-normalized function (or class)
"""
if exclude is None:
- exclude = ["n... |
TDAmeritrade__stumpy-806 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stumpy/core.py:_idx_to_mp"
],
"edited_modules": [
"stumpy/core.py:_idx_to_mp"
]
},
"file": "stumpy/core.py"
}
] | TDAmeritrade/stumpy | 275b9982674c3ee79a41184191baa4b1ad323e8e | Adding `T_subseq_isconstant` to `core._idx_to_mp`
Currently, the function `core._idx_to_mp` calculate profile value based on the profie indices. However, this calculation, from index to matrix profile, needs to consider the constant subseqs. Hence, we need to add the parma `T_subseq_isconstant` to `core._idx_to_mp`
... | diff --git a/stumpy/core.py b/stumpy/core.py
index 6c20f4e..287c0cc 100644
--- a/stumpy/core.py
+++ b/stumpy/core.py
@@ -2371,7 +2371,7 @@ def _get_mask_slices(mask):
return slices
-def _idx_to_mp(I, T, m, normalize=True, p=2.0):
+def _idx_to_mp(I, T, m, normalize=True, p=2.0, T_subseq_isconstant=None):
"... |
TDAmeritrade__stumpy-817 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stumpy/aampi.py:aampi.__init__"
],
"edited_modules": [
"stumpy/aampi.py:aampi"
]
},
"file": "stumpy/aampi.py"
},
{
"changes": {
"added_entities": null,
... | TDAmeritrade/stumpy | 765965bdf158929f1b9588903c183f05a3229979 | Allow user to use pre-calculated `mp` in `stumpy.stumpi.py`
It seems that `stumpy.stumpi.py` needs to calculate `matrix profile (mp)` in the beginning of the algorithm.
https://github.com/TDAmeritrade/stumpy/blob/576de379994896063be71d264e48a08ae17476cf/stumpy/stumpi.py#L118
And, then it will be updated quickly ... | diff --git a/stumpy/aampi.py b/stumpy/aampi.py
index 9a04591..8ef3a47 100644
--- a/stumpy/aampi.py
+++ b/stumpy/aampi.py
@@ -35,6 +35,14 @@ class aampi:
Note that this will increase the total computational time and memory usage
when k > 1.
+ mp : numpy.ndarry, default None
+ A pre-computed... |
TDAmeritrade__stumpy-856 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stumpy/motifs.py:_motifs",
"stumpy/motifs.py:match"
],
"edited_modules": [
"stumpy/motifs.py:_motifs",
"stumpy/motifs.py:match"
]
},
"file": "stumpy/mot... | TDAmeritrade/stumpy | 82ce308fc8b90a83ee55aa52504e1ab9b018f565 | bug in motifs.py
In function `_motifs` (in module `motifs.py`), we see the following lines of code:
https://github.com/TDAmeritrade/stumpy/blob/43a1cea710c004ed08fb1de0e712e3335917f61d/stumpy/motifs.py#L119-L125
which is not correct as we should have passed `max_matches` to this function, but we are passing `Non... | diff --git a/stumpy/motifs.py b/stumpy/motifs.py
index 0c8246d..4585dea 100644
--- a/stumpy/motifs.py
+++ b/stumpy/motifs.py
@@ -121,7 +121,7 @@ def _motifs(
T,
M_T=M_T,
Σ_T=Σ_T,
- max_matches=None,
+ max_matches=max_matches,
max_distance=max_dis... |
TDAmeritrade__stumpy-892 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"stumpy/core.py:_calculate_squared_distance"
],
"edited_modules": [
"stumpy/core.py:_calculate_squared_distance"
]
},
"file": "stumpy/core.py"
},
{
"changes": {
... | TDAmeritrade/stumpy | 900b10cda4ebeed5cc90d3b4cd1972e6ae18ea10 | Snippets Unit Test Assertion Failure
It appears that snippets unit tests are failing [here](https://github.com/TDAmeritrade/stumpy/actions/runs/5569517430/jobs/10172918123) and it's not clear if it may be related to the snippet comment in #828 | diff --git a/stumpy/core.py b/stumpy/core.py
index 57d05f9..3208859 100644
--- a/stumpy/core.py
+++ b/stumpy/core.py
@@ -1042,7 +1042,7 @@ def compute_mean_std(T, m):
@njit(
# "f8(i8, f8, f8, f8, f8, f8)",
- fastmath=True
+ fastmath={"nsz", "arcp", "contract", "afn", "reassoc"}
)
def _calculate_squared_... |
TGSAI__segy-175 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/segy/accessors.py:TraceAccessor._update_decoders"
],
"edited_modules": [
"src/segy/accessors.py:TraceAccessor"
]
},
"file": "src/segy/accessors.py"
},
{
"ch... | TGSAI/segy | 3be2d2a58dc044146ddd51c0a54df2f1913729a8 | BUG: Unable to correctly read the 32 bit IBM Floating point numbers from trace headers
### **Details:**
Segy version 0.1.5 is unable to correctly read the values stored in trace headers in 32 bit IBM Floating point format.
It does not give any error while doing so.
### **Expected output**
The values at locations ... | diff --git a/poetry.lock b/poetry.lock
index 26bf7f7..2e8adc2 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -2,13 +2,13 @@
[[package]]
name = "adlfs"
-version = "2024.4.1"
+version = "2024.7.0"
description = "Access Azure Datalake Gen1 with fsspec and dask"
optional = true
python-versions = ">=3.8"
files = [
- ... |
TRoboto__Maha-103 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"maha/cleaners/functions/remove_fn.py:remove"
],
"edited_modules": [
"maha/cleaners/functions/remove_fn.py:remove"
]
},
"file": "maha/cleaners/functions/remove_fn.py"
... | TRoboto/Maha | 8908cd383ec4af6805be25bfe04ec3e4df6f7939 | Adding a list of strings to cleaner functions
### What problem are you trying to solve?
Enhance the cleaners functions to take a list of strings as input if needed.
### Examples (if relevant)
```py
>>> from maha.cleaners.functions import remove
>>> text = "من اليوم سوف ينتقل صديقي منور من المدينة المنورة وعنوانه ا... | diff --git a/maha/cleaners/functions/remove_fn.py b/maha/cleaners/functions/remove_fn.py
index 1385f34..47786b8 100644
--- a/maha/cleaners/functions/remove_fn.py
+++ b/maha/cleaners/functions/remove_fn.py
@@ -3,6 +3,8 @@ Functions that operate on a string and remove certain characters.
"""
from __future__ import anno... |
TRoboto__Maha-30 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "maha/parsers/rules/time/values.py"
}
] | TRoboto/Maha | a576d5385f6ba011f81cf8d0e69f52f756006489 | Last day of month parsing returns incorrect date
### What happened?
Check the following example:
```py
>>> from datetime import datetime
>>> from maha.parsers.functions import parse_dimension
>>> date = datetime(2021, 9, 21)
>>> sample_text = "آخر اثنين من شهر شباط"
>>> parse_dimension(sample_text, time=True)[... | diff --git a/maha/parsers/rules/time/values.py b/maha/parsers/rules/time/values.py
index 7c581a6..4a7d08e 100644
--- a/maha/parsers/rules/time/values.py
+++ b/maha/parsers/rules/time/values.py
@@ -729,13 +729,9 @@ _start_of_last_day = (
LAST_SPECIFIC_DAY_OF_SPECIFIC_MONTH = FunctionValue(
lambda match: parse_valu... |
TTitcombe__PrivacyPanda-23 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "privacypanda/addresses.py"
}
] | TTitcombe/PrivacyPanda | 7f2f07b7f3148dbd15dea5a0f1a773c9bc288b28 | Identify street name abbreviations
#6 introduced the capability to detect full street names, with street types "street", "road", "avenue", "way".
Addresses can be abbreviated e.g. 10 Downing St. instead of 10 Downing Street. Abbreviated street types should be included in an address search | diff --git a/.gitignore b/.gitignore
index b6e4761..28049c9 100644
--- a/.gitignore
+++ b/.gitignore
@@ -127,3 +127,6 @@ dmypy.json
# Pyre type checker
.pyre/
+
+# PrivacyPanda specifics
+images/*.svg
diff --git a/privacypanda/addresses.py b/privacypanda/addresses.py
index 53d3c82..2ec6753 100644
--- a/privacypanda... |
TUW-GEO__pygeogrids-66 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/pygeogrids/grids.py:BasicGrid.__init__",
"src/pygeogrids/grids.py:BasicGrid.find_nearest_gpi"
],
"edited_modules": [
"src/pygeogrids/grids.py:BasicGrid"
]
},
... | TUW-GEO/pygeogrids | 83f02bcd5a404b49b23931fade9a7b6f383172b2 | grid.find_nearest_gpi() max_dist ignored
``grid.find_nearest_gpi()`` takes a keyword ``max_dist``, but this is ignored in the next line when calling ´´find_k_nearest_gpi()´´ and set to ``np.Inf``
https://github.com/TUW-GEO/pygeogrids/blob/83f02bcd5a404b49b23931fade9a7b6f383172b2/src/pygeogrids/grids.py#L360
https:/... | diff --git a/src/pygeogrids/grids.py b/src/pygeogrids/grids.py
index 45da94f..3a04fa6 100644
--- a/src/pygeogrids/grids.py
+++ b/src/pygeogrids/grids.py
@@ -31,6 +31,7 @@ The grids module defines the grid classes.
import numpy as np
import numpy.testing as nptest
+import warnings
try:
from osgeo import ogr
... |
TUW-GEO__pygeogrids-74 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/pygeogrids/grids.py:BasicGrid.find_k_nearest_gpi"
],
"edited_modules": [
"src/pygeogrids/grids.py:BasicGrid"
]
},
"file": "src/pygeogrids/grids.py"
},
{
"ch... | TUW-GEO/pygeogrids | ed2134717cb4a8984666133206c73f21224033d8 | other.kdTree.find_nearest_index in calc_lut returning no result with max_dist defined
`other.kdTree.find_nearest_index` in `calc_lut` returning no result with max_dist defined, results are returned without defining max_dist. | diff --git a/CHANGELOG.rst b/CHANGELOG.rst
index 50ee51d..c664a93 100644
--- a/CHANGELOG.rst
+++ b/CHANGELOG.rst
@@ -2,6 +2,13 @@
Changelog
=========
+Version 0.4.1
+=============
+
+- Fixes a bug in the nearest neighbour lookup, where no points were returned
+ when less than k gpis are found in the selected max d... |
TabViewer__tabview-165 | [
{
"changes": {
"added_entities": [
"tabview/tabview.py:parse_path"
],
"added_modules": [
"tabview/tabview.py:parse_path"
],
"edited_entities": [
"tabview/tabview.py:view"
],
"edited_modules": [
"tabview/tabview.py:view"
]
},
... | TabViewer/tabview | b73659ffa8469d132f91d7abf3c19e117fe8b145 | File URI scheme not supported
File URI scheme as filename is not supported:
`$ tabview file://home/asparagii/test.csv` leads to a FileNotFoundException | diff --git a/tabview/tabview.py b/tabview/tabview.py
index c98188a..b7f441c 100644
--- a/tabview/tabview.py
+++ b/tabview/tabview.py
@@ -25,6 +25,11 @@ from textwrap import wrap
import unicodedata
import shlex
+if sys.version_info.major < 3:
+ from urlparse import urlparse
+else:
+ from urllib.parse import ur... |
TeamGraphix__graphix-154 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"graphix/pattern.py:Pattern.get_measurement_commands"
],
"edited_modules": [
"graphix/pattern.py:Pattern"
]
},
"file": "graphix/pattern.py"
}
] | TeamGraphix/graphix | dd15e5d65fac5ba2a1fac7b4a5ac6ec943abc613 | [Bug]: "list index out of range" in `pattern.get_measurement_commands`
**Describe the bug**
The method `pattern.get_measurement_commands` may raise `IndexError: list index out of range` if measure commands are the last commands in the pattern.
**To Reproduce**
The following code raises `IndexError`:
```python
im... | diff --git a/graphix/pattern.py b/graphix/pattern.py
index 0c700c6..fc4efc4 100644
--- a/graphix/pattern.py
+++ b/graphix/pattern.py
@@ -954,8 +954,14 @@ class Pattern:
ind = self._find_op_to_be_moved("M")
if ind == "end":
return []
- while self.__seq[ind][0] == "M":
- m... |
TeamGraphix__graphix-180 | [
{
"changes": {
"added_entities": [
"graphix/command.py:M.clifford"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"graphix/command.py:M"
]
},
"file": "graphix/command.py"
},
{
"changes": {
"added_entities": [
... | TeamGraphix/graphix | 91c5d788b52db69d03aa9e57951788f0f0d7acc3 | Remove `vop` from the `M` commands
**Is your feature request related to a problem? Please describe.**
(to be worked on after merging #155): `vop` info is redundant as it can be converted to measurement planes and angle changes.
Modify them instead of adding`vop`, in e.g. `measure_pauli` `traspile(opt=True)`, etc. rem... | diff --git a/graphix/command.py b/graphix/command.py
index e7bdf42..fcd2fbd 100644
--- a/graphix/command.py
+++ b/graphix/command.py
@@ -5,8 +5,11 @@ from __future__ import annotations
import abc
import enum
+import numpy as np
from pydantic import BaseModel
+import graphix.clifford
+from graphix.clifford import... |
TeamGraphix__graphix-225 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"graphix/graphsim/rxgraphstate.py:RXGraphState.neighbors"
],
"edited_modules": [
"graphix/graphsim/rxgraphstate.py:RXGraphState"
]
},
"file": "graphix/graphsim/rxgraphst... | TeamGraphix/graphix | 90c943374b3b2c9f3b6881ecf866ddff6dacb249 | [Bug]: `rustworkx` fails to handle non-contiguous node numbering
The following code raises `KeyError` in `rxgraphviews.get_node_index` when `use_rustworkx` is `True`:
```python
@pytest.mark.parametrize("use_rustworkx", [False, True])
def test_pauli_non_contiguous(self, use_rustworkx) -> None:
patter... | diff --git a/graphix/graphsim/rxgraphstate.py b/graphix/graphsim/rxgraphstate.py
index f310b79..d0d67c1 100644
--- a/graphix/graphsim/rxgraphstate.py
+++ b/graphix/graphsim/rxgraphstate.py
@@ -75,13 +75,13 @@ class RXGraphState(BaseGraphState):
ret.append((n, degree))
return iter(ret)
- def n... |
TeamGraphix__graphix-56 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"graphix/gflow.py:find_odd_neighbor"
],
"edited_modules": [
"graphix/gflow.py:find_odd_neighbor"
]
},
"file": "graphix/gflow.py"
},
{
"changes": {
"added_e... | TeamGraphix/graphix | 19d4e0e8811186f9a3ee3c211273f6f5e8516d37 | Measurement pattern for Toffoli gate
Implement measurement pattern for Toffoli gate in `graphix.Circuit` class for transpilation. Please consider:
- minimize the number of commands by choosing an appropriate decomposition before translating into a measurement pattern.
- Make sure the `Circuit.simulate_statevector()`... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 2ffe97c..33f45ce 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -13,6 +13,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Only `networkx` backend was available for pattern optimization.
By setting the `use_rustworkx` option to... |
TeamLEGWORK__LEGWORK-117 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "legwork/_version.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"legwork/strain.p... | TeamLEGWORK/LEGWORK | f49886e8e9728f975ce361f0a722e1ba96138d7a | throw a warning on lw.utils.fn_dot when n=0
**Describe the new feature you'd like**
I think we should seriously consider adding a user warning when a harmonic=0 is specified for [utils.fn_dot](https://legwork.readthedocs.io/en/latest/api/legwork.utils.fn_dot.html#legwork.utils.fn_dot)
**Any suggestions for how to i... | diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index f09bc24..ddc6467 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -56,7 +56,7 @@ jobs:
# test with as many cores as possible for speed
pytest legwork -n=auto --... |
Telefonica__toolium-70 | [
{
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"added_modules": null,
"edited_entities": [
"toolium/pageelements/group_page_element.py:Group.reset_object"
],
"edited_modules": [
"toolium/pageelements/group_page_element.py:Group"
]
},
"file": "toolium/pageeleme... | Telefonica/toolium | e35c53831bd3a61c40cd3e13dd972783c24ff664 | Elements not found in nested groups
When you have several nested groups the parent parameter is not correctly filled and sometimes the elements of a group cannot be found and "NoSuchElementException" is given.
Defined groups example:
class ThirdGroup(Group):
def init_page_elements(self):
self.element3 = Bu... | diff --git a/CHANGELOG.rst b/CHANGELOG.rst
index 355d22e..8ecab67 100644
--- a/CHANGELOG.rst
+++ b/CHANGELOG.rst
@@ -1,6 +1,13 @@
Toolium Changelog
=================
+v1.2.4
+------
+
+*Release date: 2017-03-17*
+
+- Fix NoSuchElementException error finding elements in nested groups
+
v1.2.3
------
diff --git a... |
Textualize__textual-1352 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/textual/dom.py:DOMNode._merge_bindings"
],
"edited_modules": [
"src/textual/dom.py:DOMNode"
]
},
"file": "src/textual/dom.py"
}
] | Textualize/textual | 9acdd70e365c41275c55e44ba91c5c30c09aa1fd | A `Widget`-derived widget with `inherit_bindings=False`, but no `BINDINGS`, appears to still inherit bindings
This is *very* much related to #1343, but I think merits an issue of its own to consider first. The reasons *why* this happens seem clear enough, but I feel the setup may cause confusion. With Textual as it is ... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index d1641b1a3..42111addd 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -28,6 +28,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/).
- Fixed issue with auto width/height and relative children https://github.com/Textualize/textual/issues/1319
- Fixed... |
Textualize__textual-1359 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/textual/reactive.py:Reactive.__set__"
],
"edited_modules": [
"src/textual/reactive.py:Reactive"
]
},
"file": "src/textual/reactive.py"
}
] | Textualize/textual | b9f2382f96e4ce96a859b6c4baccde70cfb8dc53 | Validators and watchers should run hand-in-hand
When `init=True` in a `reactive` attribute, the `watch_` method for that attribute run, but the `validate_` method does not.
This seems rather confusing and we think that validators and watchers should always run hand-in-hand.
If the watcher is called, you should be confi... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index a8a4fa91e..96d5e88ba 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -9,6 +9,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/).
### Fixed
+- Fixed validator not running on first reactive set https://github.com/Textualize/textual/pull/1359
- E... |
Textualize__textual-1427 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/textual/widgets/_data_table.py:DataTable.clear"
],
"edited_modules": [
"src/textual/widgets/_data_table.py:DataTable"
]
},
"file": "src/textual/widgets/_data_table.... | Textualize/textual | cef386a40abcdf3ba8284ed07ca4689d8d97315d | Support clearing columns via `DataTable.clear()`
Looks like this feature must have gotten lost in the shuffle, since the docstring mentions it but the function doesn't support it: https://github.com/Textualize/textual/blob/3aaa4d3ec1cfd1be86c781a34da09e6bc99e8eff/src/textual/widgets/_data_table.py#L315-L328
Happy to... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index aff340411..d0e5349c9 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,6 +5,12 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](http://keepachangelog.com/)
and this project adheres to [Semantic Versioning]... |
Textualize__textual-1546 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/textual/app.py:App._process_messages"
],
"edited_modules": [
"src/textual/app.py:App"
]
},
"file": "src/textual/app.py"
},
{
"changes": {
"added_entit... | Textualize/textual | 2468a8ca83422194e52f6183e25f11455d8a19c7 | Make `COMPONENT_CLASSES` inheritable
Much like `DEFAULT_CSS` and similar things, look at the idea of making `COMPONENT_CLASSES` inheritable. At the moment, if you inherit from a widget that has a `COMPONENT_CLASSES`, and you set your own in your derived widget, you'll erase those of the parent. Right now the best optio... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 954f3b7d0..53dabe816 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -14,6 +14,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/).
- Added read-only public access to the children of a `TreeNode` via `TreeNode.children` https://github.com/Textualize... |
Textualize__textual-1551 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/textual/css/_help_text.py:style_flags_property_help_text"
],
"edited_modules": [
"src/textual/css/_help_text.py:style_flags_property_help_text"
]
},
"file": "src/te... | Textualize/textual | 0762a6b8583ce62890bb5f216b2a4cb1724b1c7d | Improve error message when value `none` is in a list of text styles
When you provide an illegal value for the CSS rule `link-style`, you get a helpful message displaying all legal values, saying that `text-style` expects a space-separated list of those.
If you set `text-style: bold italic reverse` it works fine.
... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 402b8064c..a3e84657f 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -22,6 +22,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/).
- Fail-fast and print pretty tracebacks for Widget compose errors https://github.com/Textualize/textual/pull/1505
- ... |
Textualize__textual-1640 | [
{
"changes": {
"added_entities": [
"src/textual/css/_style_properties.py:ScalarListProperty.__init__"
],
"added_modules": null,
"edited_entities": [
"src/textual/css/_style_properties.py:ScalarListProperty.__set__"
],
"edited_modules": [
"src/textual/c... | Textualize/textual | 383ab1883103cdf769b89fd6eb362f412f12679d | Grid columns with multiple units resolves percent unit to wrong value
In a grid layout with mixed units in the style `grid-columns`, the column associated with `25%` gets the wrong size.
However, using `25w` or `25vw` instead of `25%` produces the correct result.
Here is the screenshot of the app where the middle c... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index e3ffc3dbe..01536dfaf 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,6 +5,12 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](http://keepachangelog.com/)
and this project adheres to [Semantic Versioning]... |
Textualize__textual-1837 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "src/textual/css/tokenize.py"
}
] | Textualize/textual | be850635c2d764dfa4d45707a0cb92bfd63f355d | [CSS] Descendant type selectors can't have a numeric in their name
Consider the following code:
```python
from textual.app import App, ComposeResult
from textual.containers import Vertical
from textual.widgets import Header, Footer, Label
class LabelH1( Label ):
...
class CSSOddnessApp( App[ ... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 98fdac88e..7727141ef 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,6 +5,12 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](http://keepachangelog.com/)
and this project adheres to [Semantic Versioning]... |
Textualize__textual-1926 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/textual/_xterm_parser.py:XTermParser._sequence_to_key_events"
],
"edited_modules": [
"src/textual/_xterm_parser.py:XTermParser"
]
},
"file": "src/textual/_xterm_par... | Textualize/textual | 623b70d4ac8983ac104b27062abab3cb2bbdbdfa | Pilot cannot press key minus
The way `App._press_keys` is implemented is flawed in here:
https://github.com/Textualize/textual/blob/ba6c8afac6ffb78dffeab9ebdc7c115fd28cd40b/src/textual/app.py#L830-L842
There is a clear bug because the transformation done on `key` with two consecutive replacements cannot be undone... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 76fb3117a..a6305e842 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -23,6 +23,10 @@ and this project adheres to [Semantic Versioning](http://semver.org/).
- Added `switch` attribute to `Switch` events https://github.com/Textualize/textual/pull/1940
- Breaking change: Ad... |
Textualize__textual-2038 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/textual/message_pump.py:MessagePumpMeta.__new__"
],
"edited_modules": [
"src/textual/message_pump.py:MessagePumpMeta"
]
},
"file": "src/textual/message_pump.py"
}... | Textualize/textual | a3887dfcbb7fe47cc6e10da7645d01cffe1a91e3 | Investigate an improvement to how the namespace of messages is calculated
Consider the following code, where there is a base class for two widgets that share a *lot* in common but have slightly different uses/APIs/reasons-to-exist. They both have a `value` in common and so will have a `Changed` message (consider this a... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 66273dcfe..49d764f65 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,6 +5,13 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](http://keepachangelog.com/)
and this project adheres to [Semantic Versioning]... |
Textualize__textual-2464 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/textual/widgets/_data_table.py:DataTable.watch_cursor_coordinate"
],
"edited_modules": [
"src/textual/widgets/_data_table.py:DataTable"
]
},
"file": "src/textual/wi... | Textualize/textual | e5c54a36832b69e30da01f66fcfe629ec3c3b8c9 | DataTable - When cursor_coordinate updates, we should scroll_cursor_visible
When the cursor moves out of the screen, we should scroll the cursor into visibility.
It seems like there is already code to do this, but because of #2458 the scrolling doesn't work. | diff --git a/CHANGELOG.md b/CHANGELOG.md
index c4acf4a76..56b6aff24 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,6 +5,12 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](http://keepachangelog.com/)
and this project adheres to [Semantic Versioning]... |
Textualize__textual-2479 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/textual/reactive.py:Reactive.var",
"src/textual/reactive.py:var.__init__"
],
"edited_modules": [
"src/textual/reactive.py:Reactive",
"src/textual/reactive.py:var"... | Textualize/textual | 04083a73f8b0abcc98c3fe9fd220f0c7ae4542b4 | Moving cursor sideways in the DataTable should animate.
With #2464, I broke the smooth animation you get when moving the cursor sideways in a `DataTable`.
This behaviour should be restored. | diff --git a/CHANGELOG.md b/CHANGELOG.md
index fbc8be178..69042e4a8 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -10,11 +10,19 @@ and this project adheres to [Semantic Versioning](http://semver.org/).
### Fixed
- Fixed crash when creating a `DirectoryTree` starting anywhere other than `.`
+- Fixed line drawing i... |
Textualize__textual-2530 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/textual/widget.py:Widget.move_child"
],
"edited_modules": [
"src/textual/widget.py:Widget"
]
},
"file": "src/textual/widget.py"
}
] | Textualize/textual | d266e3685f37353eb3e201a6538d28e4cc5d7025 | Make moving a child before or after itself, a no-op
If we try to use `move_child` to move a widget to after/before itself, should we get an error or is that a no-op?
(Add tests to tests/test_widget_child_moving.py accordingly.)
Context: this arose from writing some functionality in a TODO app that sorts TODO items ... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 8d6821f92..aeaaf466a 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/).
### Changed
- App `title` and `sub_title` attributes can be set to any type https://github.com/Textualize/textual/... |
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