instance_id stringlengths 10 57 | file_changes listlengths 1 15 | repo stringlengths 7 53 | base_commit stringlengths 40 40 | problem_statement stringlengths 11 52.5k | patch stringlengths 251 7.06M |
|---|---|---|---|---|---|
lektor__lektor-1144 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"lektor/cli.py:cli"
],
"edited_modules": [
"lektor/cli.py:cli"
]
},
"file": "lektor/cli.py"
},
{
"changes": {
"added_entities": null,
"added_modules"... | lektor/lektor | 86070c17d904e8f5695c38912c08624b972b28f3 | Deprecated Werkzeug APIs in use
Werkzeug 2.3 deprecated a number of functions in the `werkzeug.urls` module. Lektor uses some of these methods:
* `werkzeug.urls.url_parse` (in favor of `urllib.parse.urlsplit`)
* `werkzeug.urls.url_join` (in favor of `urllib.parse.urljoin`)
It also removes the `werkzeug.urls.URL` w... | diff --git a/lektor/cli.py b/lektor/cli.py
index 23d6573..69ab2df 100644
--- a/lektor/cli.py
+++ b/lektor/cli.py
@@ -41,7 +41,8 @@ def cli(ctx, project=None, language=None):
This command can invoke lektor locally and serve up the website. It's
intended for local development of websites.
"""
- warning... |
lektor__lektor-960 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"lektor/db.py:Image.thumbnail"
],
"edited_modules": [
"lektor/db.py:Image"
]
},
"file": "lektor/db.py"
},
{
"changes": {
"added_entities": null,
"add... | lektor/lektor | c7419cf6f6a986740da680fa158055cc83a5befe | Disable deprecated implicit thumbnail upscaling?
Implicit thumbnail upscaling, as well as the `crop` argument to [`Image.thumbnail`](https://github.com/lektor/lektor/blob/f135d73a11ac557bff4f1068958e71b6b526ee63/lektor/db.py#L818) have been [deprecated](https://github.com/lektor/lektor/blob/f135d73a11ac557bff4f1068958e... | diff --git a/lektor/db.py b/lektor/db.py
index 6cfcea9..bae4b54 100644
--- a/lektor/db.py
+++ b/lektor/db.py
@@ -6,7 +6,6 @@ import hashlib
import operator
import os
import posixpath
-import warnings
from collections import OrderedDict
from datetime import timedelta
from itertools import islice
@@ -832,21 +831,9 ... |
lektor__lektor-webpack-support-17 | [
{
"changes": {
"added_entities": [
"lektor_webpack_support.py:WebpackSupportPlugin.install_node_dependencies"
],
"added_modules": null,
"edited_entities": [
"lektor_webpack_support.py:WebpackSupportPlugin.npm_install",
"lektor_webpack_support.py:WebpackSupportPlug... | lektor/lektor-webpack-support | ab6134744dec30980dc41e1cd0f7736759cc26a0 | Yarn support
Would you be open to a PR adding support for using [`yarn`](https://yarnpkg.com/) in place of `npm install`? It both runs faster and uses a lockfile (for package version pinning). The implementation I have in mind would [rename and] update `npm_install()` to check for a `yarn` executable and a `.../webpack... | diff --git a/README.md b/README.md
index 5804c63..581e9bb 100644
--- a/README.md
+++ b/README.md
@@ -35,7 +35,7 @@ but not important for functionality, change them to suit your own needs):
}
```
-Now we can npm install the rest:
+Now we can `npm install` (or `yarn add`) the rest:
```
$ cd </path/to/your/lektor/... |
lenskit__lkpy-312 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"lenskit/metrics/topn.py:ndcg"
],
"edited_modules": [
"lenskit/metrics/topn.py:ndcg"
]
},
"file": "lenskit/metrics/topn.py"
}
] | lenskit/lkpy | 0716300a91e55b54e3da150c5fa8355af79fa745 | nDCG metric does not correctly truncate lists
The nDCG metric has two faults whereby it fails to correctly truncate the truth list and recommendation list under certain conditions:
1. If no k is supplied, the full truth list and recommendation list are used to compute the ideal DCG and recommendation DCG, respective... | diff --git a/lenskit/metrics/topn.py b/lenskit/metrics/topn.py
index ae1b70f3..7f616c53 100644
--- a/lenskit/metrics/topn.py
+++ b/lenskit/metrics/topn.py
@@ -300,11 +300,11 @@ def ndcg(recs, truth, discount=np.log2, k=None):
The maximum list length.
"""
- tpos = truth.index.get_indexer(recs['ite... |
lenskit__lkpy-406 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"lenskit/algorithms/knn/user.py:UserUser.fit",
"lenskit/algorithms/knn/user.py:UserUser.__init__",
"lenskit/algorithms/knn/user.py:UserUser.predict_for_user",
"lenskit/algorithms/... | lenskit/lkpy | 1f04c59f3605582f872652475ef2438d7ac81af9 | Use PyTorch to implement user-user k-NN
Advance #374 by using PyTorch to implement user-user k-NN. | diff --git a/envs/lenskit-py3.10-ci.yaml b/envs/lenskit-py3.10-ci.yaml
index eac2068d..1a7cd0ae 100644
--- a/envs/lenskit-py3.10-ci.yaml
+++ b/envs/lenskit-py3.10-ci.yaml
@@ -8,8 +8,8 @@
# Instead edit the corresponding pyproject.toml file.
#
channels:
- - conda-forge
- pytorch
+ - conda-forge
- nodefaults
... |
leo-editor__leo-editor-3678 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"leo/commands/gotoCommands.py:GoToCommands.find_node_start",
"leo/commands/gotoCommands.py:GoToCommands.scan_nonsentinel_lines",
"leo/commands/gotoCommands.py:GoToCommands.scan_sentinel_l... | leo-editor/leo-editor | d878994dcaf4bea9872248c5430f795bea3c29ed | Read sentinels more robustly
See PR #3678.
**Leo will continue to support Black-compatible sentinels**
Leo's `--black-sentinels` (`-b`) command-line option will remain.
**Leo's read code should handle sentinels more robustly**
The legacy code assumed that all sentinels have the same form (blackened or not)... | diff --git a/leo/commands/gotoCommands.py b/leo/commands/gotoCommands.py
index 3acbc7cc9..6088ee05c 100644
--- a/leo/commands/gotoCommands.py
+++ b/leo/commands/gotoCommands.py
@@ -99,7 +99,7 @@ class GoToCommands:
# if not g.unitTesting: g.printObj(contents)
# Find the node with the correct gnx.
- ... |
leo-editor__leo-editor-3728 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"leo/plugins/importers/java.py:Java_Importer"
]
},
"file": "leo/plugins/importers/java.py"
}
] | leo-editor/leo-editor | c6b4aff03981b4ed12a20b31f13bfffa950d1e48 | Java importer bugs with 'interface', (Java importer have regex without capture group, is it normal?)
See PR #3728.
The regex to capture blocks in java seem to have one for **interfaces** (the third one):
```java
block_patterns = (
('class', re.compile(r'.*?\bclass\s+(\w+)')),
('func', re.comp... | diff --git a/leo/plugins/importers/java.py b/leo/plugins/importers/java.py
index 5a1483f29..f4a882aad 100644
--- a/leo/plugins/importers/java.py
+++ b/leo/plugins/importers/java.py
@@ -20,7 +20,7 @@ class Java_Importer(Importer):
block_patterns = (
('class', re.compile(r'.*?\bclass\s+(\w+)')),
('... |
leonardbinet__lighttree-12 | [
{
"changes": {
"added_entities": [
"lighttree/tree.py:Tree._iter_nodes_with_location"
],
"added_modules": null,
"edited_entities": [
"lighttree/tree.py:Tree.show",
"lighttree/tree.py:Tree._line_repr_iter"
],
"edited_modules": [
"lighttree/tree.... | leonardbinet/lighttree | ba5d5157441cab95a85dd944839524c27ff235c7 | In `_line_repr_iter`, distinguish line formatting from tree structure
This will allow more possibilities to display tree.
Notably it could allow the display of the tree in html to have nice formatting in jupyter notebooks. | diff --git a/lighttree/tree.py b/lighttree/tree.py
index 7e6bff4..15e0401 100644
--- a/lighttree/tree.py
+++ b/lighttree/tree.py
@@ -360,8 +360,7 @@ class Tree(object):
):
"""Python generator traversing the tree (or a subtree) with optional node filtering.
- Loosely based on an algorithm from 'Es... |
leonardt__ast_tools-80 | [
{
"changes": {
"added_entities": [
"ast_tools/passes/ssa.py:SSATransformer.visit_Parameters",
"ast_tools/passes/ssa.py:SSATransformer.leave_Parameters"
],
"added_modules": null,
"edited_entities": [
"ast_tools/passes/ssa.py:SSATransformer.leave_FunctionDef"
... | leonardt/ast_tools | cfa081e3f24bf23dbe84cd50ecea8a320027de75 | Regression in fault test suite
I'm not sure how important this is, but with the latest release the following example taken from fault doesn't work anymore with the SSA pass
```python
import magma as m
import fault
class MWrapperMeta(m.MagmaProtocolMeta):
def __getitem__(cls, T):
assert cls is ... | diff --git a/ast_tools/passes/ssa.py b/ast_tools/passes/ssa.py
index 01d90fa..b37a642 100644
--- a/ast_tools/passes/ssa.py
+++ b/ast_tools/passes/ssa.py
@@ -394,9 +394,7 @@ class SSATransformer(NodeTrackingTransformer):
# Need to visit params to get them to be rebuilt and therfore
# tracked ... |
leonardt__hwtypes-39 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"hwtypes/fp_vector.py:FPVector.__init__"
],
"edited_modules": [
"hwtypes/fp_vector.py:FPVector"
]
},
"file": "hwtypes/fp_vector.py"
}
] | leonardt/hwtypes | cc7e418eb3561970bd6ca87779f858528670b67c | FPVector is missing "to_fp" method
This would cast a BitVector to floating point.
```
BFloat16 = FPVector[8,7,...]
assert BFloat16.to_fp(BitVector[16](10)) == BFloat16(10.0)
``` | diff --git a/README.md b/README.md
index 1324025..2d1e3ed 100644
--- a/README.md
+++ b/README.md
@@ -12,9 +12,3 @@ pip install hwtypes
brew install gmp mpfr libmpc
pip install hwtypes
```
-
-## CentOS
-```
-yum install libmpc-devel mpfr-devel gmp-devel
-pip install hwtypes
-```
diff --git a/hwtypes/fp_vector.py b/hw... |
leonardt__hwtypes-50 | [
{
"changes": {
"added_entities": [
"hwtypes/bit_vector.py:BitVector.value"
],
"added_modules": null,
"edited_entities": [
"hwtypes/bit_vector.py:BitVector.concat",
"hwtypes/bit_vector.py:BitVector.bvrol",
"hwtypes/bit_vector.py:BitVector.bvror",
"h... | leonardt/hwtypes | 11bf81a76f31f703248e3d5b84a9c631bd618422 | semantics for Bitvector concat is opposite of magma concat
semantics for magma.concat is concat(lsbs,msbs) while hwtypes.BitVector.concat is concat(msbs,lsbs)
We should unify the semantics. I would prefer magma's version but at the end of the day, it does not matter. | diff --git a/hwtypes/bit_vector.py b/hwtypes/bit_vector.py
index 885b2cb..e7f0010 100644
--- a/hwtypes/bit_vector.py
+++ b/hwtypes/bit_vector.py
@@ -175,6 +175,10 @@ class BitVector(AbstractBitVector):
def __repr__(self):
return "BitVector[{size}]({value})".format(value=self._value, size=self.size)
+ ... |
leonardt__hwtypes-64 | [
{
"changes": {
"added_entities": [
"hwtypes/adt.py:Product.from_fields"
],
"added_modules": null,
"edited_entities": [
"hwtypes/adt.py:Product.__new__"
],
"edited_modules": [
"hwtypes/adt.py:Product"
]
},
"file": "hwtypes/adt.py"
},
{... | leonardt/hwtypes | 06507759411b492ae7355b572adc0fc2a5bc3688 | [feature request] dynamic constructor for adt.Product
`new_product(class_name : str, field_dict : tp.Mapping[str,type])` | diff --git a/hwtypes/adt.py b/hwtypes/adt.py
index 64837d8..1be6a4a 100644
--- a/hwtypes/adt.py
+++ b/hwtypes/adt.py
@@ -1,6 +1,7 @@
from .adt_meta import TupleMeta, ProductMeta, SumMeta, EnumMeta, is_adt_type
from collections import OrderedDict
from types import MappingProxyType
+import typing as tp
__all__ = [... |
leonardt__hwtypes-66 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"hwtypes/adt.py:Product.from_fields"
],
"edited_modules": [
"hwtypes/adt.py:Product"
]
},
"file": "hwtypes/adt.py"
},
{
"changes": {
"added_entities": [
... | leonardt/hwtypes | db1076c422df0e3443a669ca4fa92021104b71c0 | [feature-request] rebind(new_family) method on ADT types | diff --git a/hwtypes/adt.py b/hwtypes/adt.py
index 1be6a4a..e65d70f 100644
--- a/hwtypes/adt.py
+++ b/hwtypes/adt.py
@@ -76,28 +76,6 @@ class Product(Tuple, metaclass=ProductMeta):
d[k] = getattr(self, k)
return MappingProxyType(d)
- @classmethod
- def from_fields(cls,
- class_n... |
leonardt__hwtypes-70 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"hwtypes/adt.py:Sum.__init__",
"hwtypes/adt.py:Sum.value"
],
"edited_modules": [
"hwtypes/adt.py:Sum"
]
},
"file": "hwtypes/adt.py"
},
{
"changes": {
... | leonardt/hwtypes | 533beaabc2972e074c1b70dc213d38420ecd8cb8 | [feature-request] Access and modify Sum types by name (similar API to Product)
```
A = Sum[bool,int]
assert A.field_dict['bool'] == bool
assert A.field_dict['int'] == int
#I would like the following to work
assert hasattr(A,'bool')
assert hasattr(A,'int')
assert A.bool == bool
assert A.int == int
a = A(5)
a... | diff --git a/hwtypes/adt.py b/hwtypes/adt.py
index e65d70f..07abf20 100644
--- a/hwtypes/adt.py
+++ b/hwtypes/adt.py
@@ -78,9 +78,7 @@ class Product(Tuple, metaclass=ProductMeta):
class Sum(metaclass=SumMeta):
def __init__(self, value):
- if not isinstance(value, tuple(type(self).fields)):
- r... |
leonardt__hwtypes-77 | [
{
"changes": {
"added_entities": [
"hwtypes/adt_meta.py:BoundMeta.is_cached",
"hwtypes/adt_meta.py:ProductMeta.__init__"
],
"added_modules": null,
"edited_entities": [
"hwtypes/adt_meta.py:BoundMeta.__new__",
"hwtypes/adt_meta.py:BoundMeta.__getitem__",
... | leonardt/hwtypes | 85a69e89a8ee2eb6e0a8d650a4aa9e6dacb82ba7 | [feature-request] Product types defined the same way should be the same object.
I Ideally would like the following to work.
```
A0 = Product.from_fields("A",{"a":int})
A1 = Product.from_fields("A",{"a":int})
assert A0 is A1
```
I do not think this would change any existing code and would be immensely helpful. | diff --git a/hwtypes/adt_meta.py b/hwtypes/adt_meta.py
index 144cc72..0a65710 100644
--- a/hwtypes/adt_meta.py
+++ b/hwtypes/adt_meta.py
@@ -1,13 +1,14 @@
import itertools as it
import typing as tp
from abc import ABCMeta, abstractmethod
-from collections import OrderedDict
-
import weakref
from types import Map... |
lepture__authlib-270 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "authlib/integrations/httpx_client/__init__.py"
},
{
"changes": {
"added_entities": [
"authlib/integrations/httpx_client/assertion_client... | lepture/authlib | f780d1be1632538280759ecb6dbed56ff4349e1e | HTTPX OAuth1 implementation does not set Content-Length header
**Describe the bug**
The OAuth1 implementation for HTTPX does not set the content-length header, which can cause problems when using body signatures and talking to servers who block body POSTs where the length header is not specified.
**Expected behavio... | diff --git a/.github/workflows/python.yml b/.github/workflows/python.yml
index 42de65d..4db46eb 100644
--- a/.github/workflows/python.yml
+++ b/.github/workflows/python.yml
@@ -24,11 +24,11 @@ jobs:
- version: 2.7
toxenv: py27,py27-flask
- version: 3.6
- toxenv: py36,flask,django,a... |
lepture__mistune-105 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"mistune.py:escape_link"
],
"edited_modules": [
"mistune.py:escape_link",
"mistune.py:BlockGrammar",
"mistune.py:InlineGrammar"
]
},
"file": "mistune.py"... | lepture/mistune | 715046fe4b5f3642b24edc7fdd62ba8915228498 | parsing html can fail to close tag correctly
noticed while debugging an issue in https://github.com/lektor/lektor/issues/241#issuecomment-231819694 i noticed that raw html handling can be broken if there is a space before the closing `>` of the opening tag. i.e.
```
In [38]: mistune.markdown('<iframe src="http://gf... | diff --git a/mistune.py b/mistune.py
index b341cf2..67b0880 100644
--- a/mistune.py
+++ b/mistune.py
@@ -74,7 +74,7 @@ def escape(text, quote=False, smart_amp=True):
def escape_link(url, **kwargs):
"""Remove dangerous URL schemes like javascript: and escape afterwards."""
- lower_url = url.lower()
+ lower... |
lepture__mistune-143 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"mistune.py:InlineLexer"
]
},
"file": "mistune.py"
}
] | lepture/mistune | cef69acaa506567595e95ab6ecea25a806de622e | nested html links are broken with parse_block_html
this is a variant of #81
example_in = '<div><a href="https://example.com">Example.com</a></div>'
mistune.markdown(example_in, escape=False, parse_block_html=True)
will generate:
<div><a href="<a href="https://example.com">Example.com">https://... | diff --git a/mistune.py b/mistune.py
index 5b05fcb..175ff01 100644
--- a/mistune.py
+++ b/mistune.py
@@ -503,7 +503,7 @@ class InlineLexer(object):
'linebreak', 'strikethrough', 'text',
]
inline_html_rules = [
- 'escape', 'autolink', 'url', 'link', 'reflink',
+ 'escape', 'inline_html', ... |
lepture__mistune-277 | [
{
"changes": {
"added_entities": [
"mistune/plugins/task_lists.py:_rewrite_all_list_items"
],
"added_modules": [
"mistune/plugins/task_lists.py:_rewrite_all_list_items"
],
"edited_entities": [
"mistune/plugins/task_lists.py:task_lists_hook",
"mistune... | lepture/mistune | ab0e8b697ada8f68899a569307510133e8f13771 | Task lists cannot be nested
Task lists apparently cannot be nested (tested with master and 2.0.0rc1):
```py
>>> mistune.create_markdown(plugins=['task_lists'])('* [ ] task\n * [ ] subtask')
'<ul>\n<li class="task-list-item"><input class="task-list-item-checkbox" type="checkbox" disabled/>task<ul>\n<li>[ ] subtask... | diff --git a/mistune/plugins/task_lists.py b/mistune/plugins/task_lists.py
index 8f7997c..3094ea7 100644
--- a/mistune/plugins/task_lists.py
+++ b/mistune/plugins/task_lists.py
@@ -7,11 +7,7 @@ TASK_LIST_ITEM = re.compile(r'^(\[[ xX]\])\s+')
def task_lists_hook(md, tokens, state):
- for tok in tokens:
- ... |
lepture__mistune-393 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/mistune/inline_parser.py:InlineParser.parse_codespan"
],
"edited_modules": [
"src/mistune/inline_parser.py:InlineParser"
]
},
"file": "src/mistune/inline_parser.py"... | lepture/mistune | 0772c78bc0a62771768278263ef740345f58c0f0 | Certain characters in inline code incorrectly parsed (e.g., `&`)
MWE:
```python
import mistune
from mistune.core import BlockState
markdown = mistune.create_markdown(renderer="ast")
md = r"`&<>`"
tokens = markdown(md)
print(tokens)
```
Output:
```python
[{'type': 'paragraph', 'children': [{'type': ... | diff --git a/src/mistune/inline_parser.py b/src/mistune/inline_parser.py
index 21b04c1..97423db 100644
--- a/src/mistune/inline_parser.py
+++ b/src/mistune/inline_parser.py
@@ -19,7 +19,7 @@ from .helpers import (
parse_link_text,
unescape_char,
)
-from .util import escape, escape_url, unikey
+from .util imp... |
lepture__python-livereload-198 | [
{
"changes": {
"added_entities": [
"livereload/watcher.py:Watcher.is_file_removed"
],
"added_modules": null,
"edited_entities": [
"livereload/watcher.py:Watcher.__init__",
"livereload/watcher.py:Watcher.watch",
"livereload/watcher.py:Watcher.examine",
... | lepture/python-livereload | f80cb3ae0f8f2cdf38203a712fe25ef7f1899c34 | Doesn't detect file deletion on macOS/Windows
I was hoping to use this as a replacement for Pelican's development server, which has an option to automatically regenerate content when a file is created, updated, or deleted, but doesn't refresh the browser. I followed an [existing example](https://merlijn.vandeen.nl/2015... | diff --git a/.gitignore b/.gitignore
index 8c31eb5..46b78ee 100644
--- a/.gitignore
+++ b/.gitignore
@@ -21,6 +21,7 @@ pip-log.txt
.coverage
.tox
.env/
+venv/
docs/_build
example/style.css
diff --git a/livereload/watcher.py b/livereload/watcher.py
index b0545e6..8ac39ca 100644
--- a/livereload/watcher.py
+++ b/l... |
level12__keg-191 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"keg/web.py:BaseView.init_blueprint"
],
"edited_modules": [
"keg/web.py:BaseView"
]
},
"file": "keg/web.py"
},
{
"changes": {
"added_entities": [
"... | level12/keg | a528fe2c6381fd4d845060218a134c57d0ad71b9 | rule() when used w/ a relative URL should not result in the default URL also being available
```python
class ApprovalReview(ApprovalBaseView):
rule('<int:week_id>', post=True)
def get(self, week_id):
pass
```
```
$ marshal develop routes | grep review
admin.approval-review ... | diff --git a/docs/source/readme/installation.rst b/docs/source/readme/installation.rst
index 2c8a4e6..97859b6 100644
--- a/docs/source/readme/installation.rst
+++ b/docs/source/readme/installation.rst
@@ -2,3 +2,25 @@ Installation
============
``pip install keg``
+
+
+Upgrade Notes
+=============
+
+While we attemp... |
level12__keg-elements-132 | [
{
"changes": {
"added_entities": [
"keg_elements/forms/__init__.py:Form.field_errors"
],
"added_modules": null,
"edited_entities": [
"keg_elements/forms/__init__.py:TypeHintingTextInputB3.__call__",
"keg_elements/forms/__init__.py:TypeHintingTextInputB4.__call__",... | level12/keg-elements | 0ea69ab464c61c93338196d167c220859130196b | Form.errors, .all_errors, and .form_errors
Right now, we have:
* `Form.errors`: field errors
* `Form.form_errors`: form level errors
* `Form.all_errors`: form & field level errors
I think it would make more sense to have:
* `Form.field_errors`: field errors
* `Form.form_errors`: form level errors
* `Form.err... | diff --git a/keg_elements/forms/__init__.py b/keg_elements/forms/__init__.py
index 22baffc..c045e2c 100644
--- a/keg_elements/forms/__init__.py
+++ b/keg_elements/forms/__init__.py
@@ -4,7 +4,6 @@ from __future__ import unicode_literals
import functools
import inspect
import logging
-from collections import namedtup... |
level12__keg-elements-134 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"keg_elements/forms/__init__.py:FormGenerator.create_validators"
],
"edited_modules": [
"keg_elements/forms/__init__.py:FormGenerator"
]
},
"file": "keg_elements/forms/_... | level12/keg-elements | e590f2da7161670ad36b20cde3cb7f01d1e466ff | ModelForm Requires Precision and Scale to be Set on Numeric Columns
It seems to create validators for a `ModelForm` any Numeric columns on the model are assumed to have both precision and scale set: (focus on lines 367-368)
https://github.com/level12/keg-elements/blob/0ea69ab464c61c93338196d167c220859130196b/keg_eleme... | diff --git a/keg_elements/forms/__init__.py b/keg_elements/forms/__init__.py
index c045e2c..4bde279 100644
--- a/keg_elements/forms/__init__.py
+++ b/keg_elements/forms/__init__.py
@@ -365,6 +365,8 @@ class FormGenerator(FormGeneratorBase):
def create_validators(self, prop, column):
validators = super(For... |
level12__keg-elements-71 | [
{
"changes": {
"added_entities": [
"keg_elements/forms/validators.py:ValidateUnique.get_obj"
],
"added_modules": null,
"edited_entities": [
"keg_elements/forms/validators.py:ValidateUnique.__call__"
],
"edited_modules": [
"keg_elements/forms/validators... | level12/keg-elements | 7838f08ef0e8fec7e2e74c8dcad21f748e98a697 | `ValidateUnique` form validator can integrate better
Right now `ValidateUnique` requires that the Form have a `obj` member. This must be added manually to the form since it's not included by default on a WTForm form. However, WTForms do have a `_obj` member which has the same purpose. We could make `ValidateUnique` eas... | diff --git a/keg_elements/forms/validators.py b/keg_elements/forms/validators.py
index f65db1d..d473d7a 100644
--- a/keg_elements/forms/validators.py
+++ b/keg_elements/forms/validators.py
@@ -47,8 +47,18 @@ class ValidateUnique(object):
def __init__(self, object_html_link=None):
self.object_html_link = o... |
level12__keg-elements-82 | [
{
"changes": {
"added_entities": [
"keg_elements/forms/validators.py:ValidateAlphaNumeric.__init__",
"keg_elements/forms/validators.py:ValidateAlphaNumeric.__call__"
],
"added_modules": [
"keg_elements/forms/validators.py:ValidateAlphaNumeric"
],
"edited_ent... | level12/keg-elements | 1d0f3d854820ca888ea4c0020af9e7f4d46a6c6a | Add an alphanumeric validator
Currently there is no validator for alphanumeric (Characters and numbers only). It would be nice to have one for reuse. | diff --git a/docker-entry b/docker-entry
index b30f472..f933af4 100644
--- a/docker-entry
+++ b/docker-entry
@@ -22,7 +22,7 @@ export PIP_DISABLE_PIP_VERSION_CHECK=1
# b/c it gives me control over what version of tox I'm using without having to rebuild the
# docker image.
python3.5 -m pip install --upgrade --force-r... |
level12__keg-storage-56 | [
{
"changes": {
"added_entities": [
"keg_storage/backends/base.py:StorageBackend.copy"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"keg_storage/backends/base.py:StorageBackend"
]
},
"file": "keg_storage/backends/base.py"
},
... | level12/keg-storage | 02003a8efcaf29c9167ed68ddee13a1f8a1bed2d | Implement method(s) to natively copy objects in S3 and local storage backends
Need a way to natively copy objects so that files don't need to be downloaded and re-uploaded in order to duplicate. | diff --git a/keg_storage/backends/base.py b/keg_storage/backends/base.py
index dedaa6b..dcc51ba 100644
--- a/keg_storage/backends/base.py
+++ b/keg_storage/backends/base.py
@@ -158,6 +158,12 @@ class StorageBackend:
"""
raise NotImplementedError()
+ def copy(self, path: str, new_path: str):
+ ... |
level12__morphi-6 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"morphi/messages/manager.py:gettext_find"
],
"edited_modules": [
"morphi/messages/manager.py:gettext_find"
]
},
"file": "morphi/messages/manager.py"
}
] | level12/morphi | 291ca955fbe2d2ef56899f84fca5b51193d09640 | Certain paths in locale directory can causes ValueErrors
If a user-specified locale directory contains parent references ('..') or absolute paths, the package resource loader can throw a ValueError. | diff --git a/morphi/messages/manager.py b/morphi/messages/manager.py
index 3137358..71c946f 100644
--- a/morphi/messages/manager.py
+++ b/morphi/messages/manager.py
@@ -256,7 +256,7 @@ def gettext_find(domain, localedir=None, languages=None, all=False, # noqa: C90
else:
return mof... |
levitsky__pyteomics-144 | [
{
"changes": {
"added_entities": [
"pyteomics/proforma.py:ModificationBase.__reduce__",
"pyteomics/proforma.py:ModificationBase.__getstate__",
"pyteomics/proforma.py:ModificationBase.__setstate__"
],
"added_modules": null,
"edited_entities": [
"pyteomics/p... | levitsky/pyteomics | 7ca5eb20c099d08fdfbfbad14f8763ef1b7fff96 | [proforma] Modifications cannot be pickled after being resolved
Hi @mobiusklein,
We have been using the ProForma module heavily in most of our tools now, so first: A big thanks for all your work and continuous support on it!
Since Pyteomics 4.7, our tools that use multiprocessing on ProForma peptides have been t... | diff --git a/pyteomics/proforma.py b/pyteomics/proforma.py
index c24792b..3a17f58 100644
--- a/pyteomics/proforma.py
+++ b/pyteomics/proforma.py
@@ -654,6 +654,19 @@ class ModificationBase(TagBase):
self._definition = None
self.style = style
+ def __reduce__(self):
+ return self.__class__,... |
levitsky__pyteomics-158 | [
{
"changes": {
"added_entities": [
"pyteomics/proforma.py:TagBase.has_mass",
"pyteomics/proforma.py:ModificationBase.has_mass",
"pyteomics/proforma.py:MassModification.has_mass"
],
"added_modules": null,
"edited_entities": [
"pyteomics/proforma.py:ProForma... | levitsky/pyteomics | 2d0a8748dc39784a10ee316dbe5a215db4ad67c6 | Unparsable modifications are silently ignored in ProForma mass calculation
Hello,
I discovered a quirky "attitude" of ProForma parsing.
If a ProForma object has a modification that cannot be decoded this modification is silently ignored in all further calculations, while the same calculation on the modification o... | diff --git a/pyteomics/proforma.py b/pyteomics/proforma.py
index 2d71c33..188a622 100644
--- a/pyteomics/proforma.py
+++ b/pyteomics/proforma.py
@@ -207,6 +207,16 @@ class TagBase(object):
def parse(cls, buffer):
return process_tag_tokens(buffer)
+ def has_mass(self):
+ """
+ Check if t... |
levitsky__pyteomics-169 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "pyteomics/auxiliary/__init__.py"
},
{
"changes": {
"added_entities": [
"pyteomics/auxiliary/utils.py:ensure_url_prefix"
],
"... | levitsky/pyteomics | 6c1157d8877a6f70c03f9db22cb59deda991f2f3 | proforma.set_unimod_path()
Hello,
If I undestand correctly from the documentation the method `proforma.set_unimod_path("path/to/unimod.xml")` shoud load a local copy of unimod to avoid download it every time. However, if I specify the path to the local copy I get `ValueError: unknown url type: 'unimod_tables.xml'`. If... | diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 9407f37..a04eeb6 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -35,3 +35,24 @@ jobs:
- name: Run the tests
run: |
cd tests; find . -name 'test_*.py' -print0 |... |
levlaz__circleci.py-28 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"circleci/api.py:Api.retry_build"
],
"edited_modules": [
"circleci/api.py:Api"
]
},
"file": "circleci/api.py"
}
] | levlaz/circleci.py | 873f151b4c378dec7333c68f9f5e5279e0899532 | Update retry method to include retry with SSH
We have retry, and we also have retry without cache via the Experimental API. We should also include an option to retry with SSH as [described here](https://circleci.com/docs/api/v1-reference/#retry-build) | diff --git a/circleci/api.py b/circleci/api.py
index cf8a7ab..84ea9c6 100644
--- a/circleci/api.py
+++ b/circleci/api.py
@@ -259,7 +259,7 @@ class Api():
resp = self._request('GET', endpoint)
return resp
- def retry_build(self, username, project, build_num, vcs_type='github'):
+ def retry_buil... |
lexibank__pylexibank-134 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/pylexibank/cldf.py:LexibankWriter.add_languages",
"src/pylexibank/cldf.py:LexibankWriter.add_concepts"
],
"edited_modules": [
"src/pylexibank/cldf.py:LexibankWriter"
... | lexibank/pylexibank | 0ddc78b6e280e9296bdd14f9bd884d1e0061cc53 | Return lookup from LexibankWriter.add_* methods...
...if one is defined via a `lookup_factory` argument.
See https://github.com/lexibank/pylexibank/issues/132#issuecomment-545931006 | diff --git a/src/pylexibank/cldf.py b/src/pylexibank/cldf.py
index deee9a2..cb38b21 100644
--- a/src/pylexibank/cldf.py
+++ b/src/pylexibank/cldf.py
@@ -1,5 +1,5 @@
import re
-from collections import defaultdict
+from collections import defaultdict, OrderedDict
from itertools import chain
from pathlib import Path
i... |
lexibank__pylexibank-148 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/pylexibank/dataset.py:Dataset.cmd_readme"
],
"edited_modules": [
"src/pylexibank/dataset.py:Dataset"
]
},
"file": "src/pylexibank/dataset.py"
},
{
"changes"... | lexibank/pylexibank | 9d3001127a62fc063845f02a5afafd43a5be7234 | formspec replacements
I'm liking the formspec way of handling form cleaning, but notice that a lot of datasets do manual stripping/replacing of characters e.g. robinsonap has a proto-language where all forms have a leading `*` to indicate they're reconstructions. It's easy to do this with string replace, but its not c... | diff --git a/src/pylexibank/dataset.py b/src/pylexibank/dataset.py
index 07113dc..bac565d 100644
--- a/src/pylexibank/dataset.py
+++ b/src/pylexibank/dataset.py
@@ -218,6 +218,7 @@ class Dataset(BaseDataset):
tr = self.cldf_dir / '.transcription-report.json'
tr = jsonlib.load(tr) if tr.exists() else N... |
lexibank__pylexibank-152 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/pylexibank/dataset.py:Dataset.tokenizer"
],
"edited_modules": [
"src/pylexibank/dataset.py:Dataset"
]
},
"file": "src/pylexibank/dataset.py"
}
] | lexibank/pylexibank | 7a360022dbae0311095feb903bb6924e1b659c3a | Support multiple profiles
Do we have a standard way of supporting multiple orthographic profiles? Or should we try to always use a single file, even when the code and the profile become more complex?
My question concerns mostly WOLD, with 41 very different profiles (one per language). I couldn't find a non-hacky way... | diff --git a/src/pylexibank/dataset.py b/src/pylexibank/dataset.py
index c2c596b..078b376 100644
--- a/src/pylexibank/dataset.py
+++ b/src/pylexibank/dataset.py
@@ -139,19 +139,37 @@ class Dataset(BaseDataset):
- `kw` may be used to pass any context info to the tokenizer, when called
explicitly.
... |
lexibank__pylexibank-214 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "setup.py"
},
{
"changes": {
"added_entities": [
"src/pylexibank/metadata.py:check_standard_title"
],
"added_modules": [
... | lexibank/pylexibank | 6d10128138acc01844793e247248eca83eedb4d6 | Add check that metadata['title'] follows recommended form?
Do we want to check if the title follows the [recommended form](https://github.com/lexibank/lexibank/blob/master/CONTRIBUTING.md#titles-for-lexibank-datasets):
```
"title": "CLDF dataset derived from AUTHOR's \"SHORTTITLE\" from YEAR."
```
(even supe... | diff --git a/setup.py b/setup.py
index 8873953..d59cb48 100755
--- a/setup.py
+++ b/setup.py
@@ -28,12 +28,12 @@ setup(
platforms='any',
python_requires='>=3.5',
install_requires=[
+ 'attrs>=19.2',
'segments>=2.1.1',
'cldfbench[excel]>=1.0',
'csvw>=1.5.6',
'clld... |
lhotse-speech__lhotse-1156 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"lhotse/audio/backend.py:read_opus_ffmpeg"
],
"edited_modules": [
"lhotse/audio/backend.py:read_opus_ffmpeg"
]
},
"file": "lhotse/audio/backend.py"
},
{
"changes... | lhotse-speech/lhotse | 567ba2941bb4dca4bf293d052ea7ae8ab8a590ef | The mismatch between split and split-lazy, specifically counting from 0 or 1
I note that `lhotse split` will generate splits that counting from 1, while `lhotse split-lazy` will generate splits that counting from 0.
In some icefall recipes like gigaspeech, we initially use `lhotse split` and then change to use `lhotse... | diff --git a/lhotse/audio/backend.py b/lhotse/audio/backend.py
index e84a0116..592eb759 100644
--- a/lhotse/audio/backend.py
+++ b/lhotse/audio/backend.py
@@ -872,7 +872,7 @@ def read_opus_ffmpeg(
if duration is not None:
cmd += f" -t {duration}"
# Add the input specifier after offset and duration.
-... |
lhotse-speech__lhotse-1192 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"lhotse/features/io.py:LilcomFilesWriter.write",
"lhotse/features/io.py:NumpyFilesWriter.write",
"lhotse/features/io.py:NumpyHdf5Writer.__init__",
"lhotse/features/io.py:LilcomHdf... | lhotse-speech/lhotse | a4701868e04a2156626cd4c087300de7b5ac689c | LilcomChunkyWriter replaces storage_path if it contains "."
Hi! I realize that when i use storage_path with . like "gigaspeech_overlap_0.3_TRAIN" it will end up becoming saving to the file "gigaspeech_overlap_0.lca" instead of "gigaspeech_overlap_0.3_TRAIN.lca" as expected.
It seems to be due to this line:
https://g... | diff --git a/lhotse/features/io.py b/lhotse/features/io.py
index bfcf268a..4a7b812a 100644
--- a/lhotse/features/io.py
+++ b/lhotse/features/io.py
@@ -280,7 +280,10 @@ class LilcomFilesWriter(FeaturesWriter):
# too many files in a single directory.
subdir = self.storage_path_ / key[:3]
subdir... |
librosa__librosa-1501 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"librosa/display.py:__same_axes"
],
"edited_modules": [
"librosa/display.py:__same_axes"
]
},
"file": "librosa/display.py"
}
] | librosa/librosa | b9830b4a335b1e7e4be66ee81870573bf3d516d0 | specshow auto-aspect should match on data, not decoration
**Is your feature request related to a problem? Please describe.**
PR #1312 implemented auto-aspect pinning for the case where we have a square image to show (e.g., a self-similarity matrix). The logic requires that the x and y coordinates are equivalent, an... | diff --git a/librosa/display.py b/librosa/display.py
index 7a9aba4a..98f55fed 100644
--- a/librosa/display.py
+++ b/librosa/display.py
@@ -35,6 +35,7 @@ Miscellaneous
"""
+from itertools import product
import warnings
import numpy as np
@@ -617,6 +618,23 @@ def __envelope(x, hop):
return x_frame.max(axis=... |
librosa__librosa-1529 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"librosa/core/audio.py:autocorrelate"
],
"edited_modules": [
"librosa/core/audio.py:autocorrelate"
]
},
"file": "librosa/core/audio.py"
},
{
"changes": {
"... | librosa/librosa | ad90c4bd11680e6f62475775fbe7c0568ea976bc | Vectorized utility functions: abs2, unit phasor, others?
#### Description
It would be useful to have an efficient function for getting magnitude-squared (power) from real or complex variables. This came up in offline discussion of #742 , where `abs` is doing unnecessary work if we actually want power anyway.
This ... | diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index a84f5047..1d468da8 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -129,10 +129,11 @@ the HTML output by typing ``make html`` from the docs/ directory.
The resulting HTML files will be placed in _build/html/ and are viewable
in a web browser. See the README ... |
lidatong__dataclasses-json-123 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dataclasses_json/mm.py:_UnionField._deserialize",
"dataclasses_json/mm.py:schema"
],
"edited_modules": [
"dataclasses_json/mm.py:_UnionField",
"dataclasses_json/mm.py... | lidatong/dataclasses-json | 37de0bebb56964cd3207d3a2a1260f5fc6542709 | field_name is not supported with schema
```ipython
In [4]: @dataclasses_json.dataclass_json
...: @dataclasses.dataclass
...: class Person:
...: name: str = dataclasses.field(metadata=dataclasses_json.config(field_name="fullname"))
...: age: int
...:
In [5]: p = Person("A B", 23)
... | diff --git a/dataclasses_json/mm.py b/dataclasses_json/mm.py
index 08a69e9..5df24eb 100644
--- a/dataclasses_json/mm.py
+++ b/dataclasses_json/mm.py
@@ -1,6 +1,7 @@
import typing
import warnings
import sys
+from copy import deepcopy
from dataclasses import MISSING, is_dataclass, fields as dc_fields
from datetime... |
lidatong__dataclasses-json-346 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dataclasses_json/core.py:_is_supported_generic",
"dataclasses_json/core.py:_decode_generic",
"dataclasses_json/core.py:_decode_dict_keys"
],
"edited_modules": [
"data... | lidatong/dataclasses-json | 3264a0046e1aa3c0a813335286ebdbc651f58b13 | `typing` module types without parameters broken when using Python 3.9
When using types in the built-in `typing` module, if a type supports additional parameters and those parameters are not used, errors result when using Python 3.9
Code:
```python
from dataclasses import dataclass
from typing import List
from ... | diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index c7a459b..2cbe068 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -15,7 +15,7 @@ jobs:
max-parallel: 5
matrix:
# https://github.com/actions/python-versions/blo... |
lidatong__dataclasses-json-394 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dataclasses_json/core.py:_encode_json_type"
],
"edited_modules": [
"dataclasses_json/core.py:_encode_json_type"
]
},
"file": "dataclasses_json/core.py"
}
] | lidatong/dataclasses-json | 39b4c2f4462282576d72a72ade048ef49e2133bb | `to_dict(encode_json=True)` is not recursive
I expect `to_dict(encode_json=True)` to be recursive, however the code below evaluates to:
```
{'engine': 'fast', 'wheels': [<Spec.fast: 'fast'>, <Spec.slow: 'slow'>]}
```
The first level of Enums evaluate to strings as expected, but the list is not JSON encoded. I expec... | diff --git a/dataclasses_json/core.py b/dataclasses_json/core.py
index 529e153..ae1e99b 100644
--- a/dataclasses_json/core.py
+++ b/dataclasses_json/core.py
@@ -93,7 +93,12 @@ def _user_overrides_or_exts(cls):
def _encode_json_type(value, default=_ExtendedEncoder().default):
if isinstance(value, Json.__args__):... |
lidatong__dataclasses-json-426 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dataclasses_json/core.py:_decode_generic"
],
"edited_modules": [
"dataclasses_json/core.py:_decode_generic"
]
},
"file": "dataclasses_json/core.py"
}
] | lidatong/dataclasses-json | 38d8123f9f990ecd088f5d8f42768685de975644 | [BUG] common errors from decoder on inner dataclass silently ignored
### Description
If you have a dataclass with a mapping field that includes a dataclass member, and you try to `from_dict` the outer dataclass, some errors from a custom `decoder` implementation will get silently ignored.
### Code snippet that reprod... | diff --git a/dataclasses_json/core.py b/dataclasses_json/core.py
index fb7f0e6..d34e51d 100644
--- a/dataclasses_json/core.py
+++ b/dataclasses_json/core.py
@@ -281,10 +281,12 @@ def _decode_generic(type_, value, infer_missing):
# get the constructor if using corresponding generic type in `typing`
#... |
lidatong__dataclasses-json-435 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dataclasses_json/core.py:_decode_generic",
"dataclasses_json/core.py:_decode_items"
],
"edited_modules": [
"dataclasses_json/core.py:_decode_generic",
"dataclasses_js... | lidatong/dataclasses-json | bc83017e26493a67bccb46ace6caecb00e9fde99 | [BUG] tuple decode assumes homogenous sequence
### Description
If I express a field type as `tuple[int, str]`, I would expect the two dimensions of the tuple to be decoded as each separate type. This is especially true if the type of the first dimension is an Enum, because assuming that only the first type applies to ... | diff --git a/dataclasses_json/core.py b/dataclasses_json/core.py
index 3118036..acb5a47 100644
--- a/dataclasses_json/core.py
+++ b/dataclasses_json/core.py
@@ -23,7 +23,7 @@ from dataclasses_json.utils import (_get_type_cons, _get_type_origin,
_get_type_arg_param,
... |
lidatong__dataclasses-json-66 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dataclasses_json/api.py:DataClassJsonMixin.schema"
],
"edited_modules": [
"dataclasses_json/api.py:DataClassJsonMixin"
]
},
"file": "dataclasses_json/api.py"
},
{
... | lidatong/dataclasses-json | 8779ebc69a98171d849f51828bbce68b31fc25b3 | Invalid input type
Hello,
The title shows the error i've been having with this library. I've put together a scenario which reproduces the problem:
```
from dataclasses import dataclass
from typing import List
from dataclasses_json import dataclass_json
@dataclass_json
@dataclass
class Relative:
n... | diff --git a/dataclasses_json/api.py b/dataclasses_json/api.py
index 7098e69..66b52fd 100644
--- a/dataclasses_json/api.py
+++ b/dataclasses_json/api.py
@@ -1,15 +1,10 @@
import abc
import json
-from dataclasses import fields
-from datetime import datetime
from typing import Any, Callable, List, Optional, Tuple, Typ... |
lifeomic__phc-sdk-py-69 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"phc/easy/patients/address.py:expand_address_value"
],
"edited_modules": [
"phc/easy/patients/address.py:expand_address_value"
]
},
"file": "phc/easy/patients/address.py... | lifeomic/phc-sdk-py | 31adf1f7f451013216071c2d8737e3512e5b56e8 | Multiple addresses in column breaks frame expansion
Pulling out address breaks when multiple values are present. For example:
```
[{'state': 'NC', 'postalCode': '27540', 'period': {'start': '2001'}}, {'use': 'old', 'state': 'SC', 'period': {'start': '1999', 'end': '2001'}}]
```
Error:
```
----------------------... | diff --git a/phc/easy/patients/address.py b/phc/easy/patients/address.py
index edbd1c8..c7af9a3 100644
--- a/phc/easy/patients/address.py
+++ b/phc/easy/patients/address.py
@@ -1,4 +1,6 @@
import pandas as pd
+
+from funcy import first
from phc.easy.codeable import generic_codeable_to_dict
from phc.easy.util import ... |
lifeomic__phc-sdk-py-72 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"phc/easy/query/fhir_dsl_query.py:and_query_clause"
],
"edited_modules": [
"phc/easy/query/fhir_dsl_query.py:and_query_clause"
]
},
"file": "phc/easy/query/fhir_dsl_quer... | lifeomic/phc-sdk-py | 31adf1f7f451013216071c2d8737e3512e5b56e8 | Merge patient_ids with "must" query
Currently, `patient_ids` cannot be auto-merged with this type of custom query:
```python
phc.Procedure.get_date_frame(patient_ids=["a", "b"], query_overrides={
"where": {
"type": "elasticsearch",
"query": {
"bool": {
"must": [
... | diff --git a/phc/easy/query/fhir_dsl_query.py b/phc/easy/query/fhir_dsl_query.py
index c1ecc3b..2d8a5b2 100644
--- a/phc/easy/query/fhir_dsl_query.py
+++ b/phc/easy/query/fhir_dsl_query.py
@@ -8,6 +8,7 @@ FHIR_WHERE = lens.Get("where", {})
FHIR_WHERE_TYPE = FHIR_WHERE.Get("type", "")
FHIR_SIMPLE_QUERY = FHIR_WHERE.Ge... |
lig__pyventory-10 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pyventory/asset.py:Asset.__build_vars"
],
"edited_modules": [
"pyventory/asset.py:Asset"
]
},
"file": "pyventory/asset.py"
},
{
"changes": {
"added_entiti... | lig/pyventory | 1630f08e58c95e8a50c0256d13034022e4a75067 | NotImplemeted as property value
Allow defining `NotImplemented` as Asset property value.
Do not include such a property in group vars if not overridden.
Raise an exception if the value wasn't overridden in the host vars. | diff --git a/.gitignore b/.gitignore
index 80f81e0..04ae275 100644
--- a/.gitignore
+++ b/.gitignore
@@ -2,4 +2,8 @@
!.gitignore
*~
*.pyc
-*.egg-info/
+
+/venv
+/build
+/dist
+/*.egg-info
diff --git a/pyventory/asset.py b/pyventory/asset.py
index d244bb8..03c31ec 100644
--- a/pyventory/asset.py
+++ b/pyventory/asset... |
lig__pyventory-18 | [
{
"changes": {
"added_entities": [
"pyventory/asset.py:AssetAttr.__init__",
"pyventory/asset.py:AssetAttr.__get__",
"pyventory/asset.py:AssetAttr.__set_name__",
"pyventory/asset.py:AssetMeta.__new__",
"pyventory/asset.py:Asset.__new__",
"pyventory/asset.py:A... | lig/pyventory | 67d6a2a607b6731ecc83ee65ed90f78dbc2c73aa | Allow to use calculated value of an asset class
Given the following code
```python
class MyAsset(Asset):
foo = 'value is {bar}'
bar = 'my value'
```
Accessing `MyAsset.foo` will return `'value is {bar}'`.
It will be useful to be able to get `'value is my value'` instead.
| diff --git a/pyventory/asset.py b/pyventory/asset.py
index 1d58aa6..2b9a962 100644
--- a/pyventory/asset.py
+++ b/pyventory/asset.py
@@ -7,71 +7,119 @@ from pyventory import errors
__all__ = ['Asset']
-class Asset:
+class SKIP_ATTR:
+ pass
+
+
+class AssetAttr:
+ _value = None
+ _name = None
+
+ def __... |
lightkurve__lightkurve-1016 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "setup.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/lightkurve/lightcurve.p... | lightkurve/lightkurve | ddefb61404904c92d88461fc03f9d84f7f3cae3e | QLP problems
<!-- Fill in the information below before opening an issue. -->
#### Problem description
A value error is generated when a QLP light curve is appended to a Kepler light curve:
#### Example
<!-- Provide a link or minimal code snippet that demonstrates the issue. -->
```python
import lightkurve as ... | diff --git a/CHANGES.rst b/CHANGES.rst
index 6bd7de79..27614f56 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -1,3 +1,10 @@
+2.0.9 (unreleased)
+==================
+
+- Fixed a bug in ``LightCurve.append()`` which caused the method to crash
+ if the light curves contained incompatible column types. [#1015]
+
+
2.0.8 ... |
lightkurve__lightkurve-1051 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "docs/source/conf.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/lightkurve/l... | lightkurve/lightkurve | 10ff26d3ec25196dcaf6c4a95eff545d71bd8841 | Incorrect UserWarning in assigning LightCurve.meta
<!-- Fill in the information below before opening an issue. -->
#### Problem description
<!-- Provide a clear and concise description of the issue. -->
1. When user assigns value to `lc.meta`, an UserWarning` is issued. It should not be there.
2. The URL in the... | diff --git a/docs/source/conf.py b/docs/source/conf.py
index e8b19226..5c5feec9 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -19,6 +19,7 @@ extensions = [
'sphinx.ext.autosummary',
'sphinx.ext.mathjax',
'sphinx.ext.intersphinx',
+ 'sphinx.ext.viewcode',
'nbsphinx',
'numpydoc... |
lightkurve__lightkurve-1054 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "docs/source/conf.py"
},
{
"changes": {
"added_entities": [
"src/lightkurve/targetpixelfile.py:HduToMetaMapping.__repr__",
"src/l... | lightkurve/lightkurve | 10ff26d3ec25196dcaf6c4a95eff545d71bd8841 | TargetPixelFile.meta should have a friendly __repr__ and __str__
<!-- Fill in the information below before opening an issue. -->
#### Problem description
One would entering `TargetPixelFile.meta` on ipython / jupyter would display the key - value pairs in the meta, the typical behavior of dictionary like objects.... | diff --git a/docs/source/conf.py b/docs/source/conf.py
index e8b19226..5c5feec9 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -19,6 +19,7 @@ extensions = [
'sphinx.ext.autosummary',
'sphinx.ext.mathjax',
'sphinx.ext.intersphinx',
+ 'sphinx.ext.viewcode',
'nbsphinx',
'numpydoc... |
lightkurve__lightkurve-1084 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/lightkurve/io/qlp.py:read_qlp_lightcurve"
],
"edited_modules": [
"src/lightkurve/io/qlp.py:read_qlp_lightcurve"
]
},
"file": "src/lightkurve/io/qlp.py"
}
] | lightkurve/lightkurve | e0061f5c03a0bd764c9515db46b63c5093aa3ad3 | Change default column for QLP light curves
#### Problem description
When LightKurve reads light curves from the QLP HLSP, it pulls from a post-processed column (called KSP_FLUX) that is already high-pass-filtered. This makes it impossible to recover the original light curve and see features like stellar variabilit... | diff --git a/CHANGES.rst b/CHANGES.rst
index 878fac64..0f889711 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -28,6 +28,9 @@
- Added the ``LightCurve.select_flux()`` method to make it easier to use a different
column to populate the ``flux`` and ``flux_err`` columns. [#1076]
+- Modified the MIT Quicklook Pipeline... |
lightkurve__lightkurve-1119 | [
{
"changes": {
"added_entities": [
"src/lightkurve/lightcurve.py:_to_unitless_day"
],
"added_modules": [
"src/lightkurve/lightcurve.py:_to_unitless_day"
],
"edited_entities": [
"src/lightkurve/lightcurve.py:LightCurve.create_transit_mask"
],
"edi... | lightkurve/lightkurve | 6698e3bdeab666dce88ac818c7186b9e4ac590c9 | LightCurve.create_transit_mask() : should accept Quantity for period, duration
<!-- Fill in the information below before opening an issue. -->
#### Problem description
<!-- Provide a clear and concise description of the issue. -->
Right now, `period` / `duration` in `LightCurve.create_transit_mask()` does not ac... | diff --git a/src/lightkurve/lightcurve.py b/src/lightkurve/lightcurve.py
index 85fb1415..98a48b84 100644
--- a/src/lightkurve/lightcurve.py
+++ b/src/lightkurve/lightcurve.py
@@ -37,6 +37,13 @@ __all__ = ["LightCurve", "KeplerLightCurve", "TessLightCurve", "FoldedLightCurve
log = logging.getLogger(__name__)
+def _... |
lightkurve__lightkurve-1143 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/lightkurve/lightcurve.py:LightCurve.create_transit_mask"
],
"edited_modules": [
"src/lightkurve/lightcurve.py:LightCurve"
]
},
"file": "src/lightkurve/lightcurve.py... | lightkurve/lightkurve | 7757bfec85571ad472350cf6c7d340f16f57854f | lightkurve.LightCurve.create_transit_mask breaks when using astropy units
<!-- Fill in the information below before opening an issue. -->
#### Problem description
<!-- Provide a clear and concise description of the issue. -->
If I send an orbital period, transit time, and transit duration all with astropy units (w... | diff --git a/CHANGES.rst b/CHANGES.rst
index 60db57d6..a1a57f10 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -19,7 +19,7 @@
Dynamical Time (TDB) scale by default. [#1112]
- Modified ``LightCurve.create_transit_mask()`` to accept AstroPy ``Quantity``
- objects for the ``period`` and ``duration`` parameters. [#11... |
lightkurve__lightkurve-1214 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"src/lightkurve/__init__.py:Conf"
]
},
"file": "src/lightkurve/__init__.py"
},
{
"changes": {
"added_entities": [
"src/lightkurve/config/... | lightkurve/lightkurve | fddef5083c755361801f3f4bfeb3c3a177fc1b27 | Make default `download_dir` configurable
<!-- Fill in the information below before opening an issue. -->
#### Problem description
<!-- Provide a clear and concise description of the issue. -->
Right now, when users download lightcurve / TPF files,
1. they'd by default be saved at `~/.lightkurve-cache`, unless ... | diff --git a/CHANGES.rst b/CHANGES.rst
index 6b1c50ab..4f6f3b3a 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -1,3 +1,12 @@
+2.4.0 (unreleased)
+==================
+
+- Added the ability to configure the default cache directory used by
+ ``SearchResult.download()`` / ``SearchResult.download_all()``. [#1214]
+- Moved t... |
lightkurve__lightkurve-1331 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/lightkurve/correctors/sffcorrector.py:_estimate_arclength"
],
"edited_modules": [
"src/lightkurve/correctors/sffcorrector.py:_estimate_arclength"
]
},
"file": "src/... | lightkurve/lightkurve | 394246f61afddc21d584a8984e0f71c9a1673aa0 | `SFFCorrector` appears to crash when the aperture mask contains only one pixel
Example:
```python
In [1]: import lightkurve as lk
In [2]: tpf = lk.search_targetpixelfile("EPIC 211771334", campaign=18).download() ... | diff --git a/src/lightkurve/correctors/sffcorrector.py b/src/lightkurve/correctors/sffcorrector.py
index b92be92f..89c6b538 100644
--- a/src/lightkurve/correctors/sffcorrector.py
+++ b/src/lightkurve/correctors/sffcorrector.py
@@ -502,7 +502,12 @@ def _estimate_arclength(centroid_col, centroid_row):
"""
col =... |
lightkurve__lightkurve-1361 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/lightkurve/io/generic.py:read_generic_lightcurve"
],
"edited_modules": [
"src/lightkurve/io/generic.py:read_generic_lightcurve"
]
},
"file": "src/lightkurve/io/gene... | lightkurve/lightkurve | 394246f61afddc21d584a8984e0f71c9a1673aa0 | CDIPS light curves can not be stitched
<!-- Fill in the information below before opening an issue. -->
#### Problem description
Light curves from the `CDIPS` author can not be stitched together and produce a lot of warnings/errors when trying. This might indicate something is wrong with the reader for that product.... | diff --git a/src/lightkurve/io/generic.py b/src/lightkurve/io/generic.py
index f571d0e2..d051df68 100644
--- a/src/lightkurve/io/generic.py
+++ b/src/lightkurve/io/generic.py
@@ -67,7 +67,13 @@ def read_generic_lightcurve(
elif unitstr == "ppm" and repr(tab[colname].unit).startswith("Unrecognized"):
... |
lightkurve__lightkurve-1392 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/lightkurve/io/qlp.py:read_qlp_lightcurve"
],
"edited_modules": [
"src/lightkurve/io/qlp.py:read_qlp_lightcurve"
]
},
"file": "src/lightkurve/io/qlp.py"
}
] | lightkurve/lightkurve | 68fdf039371ca5cc669d9013f3a32e30c829d1a2 | Detrended flux columns in QLP lightcurves appear to have been renamed in recent sectors (56 and later)
<!-- Fill in the information below before opening an issue. -->
#### Problem description
<!-- Provide a clear and concise description of the issue. -->
The detrended columns in [QLP](https://archive.stsci.edu/hls... | diff --git a/CHANGES.rst b/CHANGES.rst
index 3ac43947..a85ed588 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -2,6 +2,8 @@
=====================
- Fixed memory leak in reading Lightcurve / TargetPixel FITS files in v2.4.2 [#1390]
+- Added support for changes in QLP High Level Science Product
+ in TESS sectors 56 a... |
lightkurve__lightkurve-1426 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/lightkurve/utils.py:centroid_quadratic"
],
"edited_modules": [
"src/lightkurve/utils.py:centroid_quadratic"
]
},
"file": "src/lightkurve/utils.py"
}
] | lightkurve/lightkurve | 143bf0a319195f6c756df753a23c1e146a777608 | `centroid_quadratic()` incorrectly failed in a boundary case, when `mask` is specified and fluxes are all negative
<!-- Fill in the information below before opening an issue. -->
#### Problem description
<!-- Provide a clear and concise description of the issue. -->
`lk.utils.centroid_quadratic()` would fail and... | diff --git a/src/lightkurve/periodogram.py b/src/lightkurve/periodogram.py
index 2c7c9932..bb3a4211 100644
--- a/src/lightkurve/periodogram.py
+++ b/src/lightkurve/periodogram.py
@@ -650,7 +650,8 @@ class LombScarglePeriodogram(Periodogram):
ls_method="fast",
**kwargs
):
- """Creates a `Pe... |
lightkurve__lightkurve-1468 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/lightkurve/lightcurve.py:LightCurve.select_flux"
],
"edited_modules": [
"src/lightkurve/lightcurve.py:LightCurve"
]
},
"file": "src/lightkurve/lightcurve.py"
}
] | lightkurve/lightkurve | 93f2ac4503eb910677f5ceae0e410eddc6161b2b | `LightCurve.select_flux()` would cause inconsistent units between flux and flux_err in some cases, e.g., `flux_bkg` from GSFC-ELEANOR-LITE
<!-- Fill in the information below before opening an issue. -->
#### Problem description
<!-- Provide a clear and concise description of the issue. -->
`LightCurve.select_flu... | diff --git a/CHANGES.rst b/CHANGES.rst
index ed1e86b7..b9272dae 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -1,8 +1,12 @@
2.5.1 (unreleased)
=====================
-- Fixed pixel to world coordinate transformation in ``TargetPixelFile.get_coordinates()``
- in line 488 ("ra, dec = w.wcs_pix2world(X.ravel(), Y.rave... |
lightkurve__lightkurve-962 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/lightkurve/lightcurve.py:LightCurve._create_plot"
],
"edited_modules": [
"src/lightkurve/lightcurve.py:LightCurve"
]
},
"file": "src/lightkurve/lightcurve.py"
}
] | lightkurve/lightkurve | 1375d9638a081074f62f8afbfba6b40d15cc43dd | Bug: offset parameter in `LightCurve.plot()` is sticky
One of our favorite users, Roland Vanderspek, reports that the `offset` parameter in `LightCurve.plot()` appears to be "sticky", i.e. calling the plot function multiple will times will unexpectedly increase the offset.
Example:
<img width="752" alt="Screen Sh... | diff --git a/CHANGES.rst b/CHANGES.rst
index 85ad72d8..05f27218 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -1,11 +1,14 @@
2.0.2 (unreleased)
==================
-- Fixed a bug which made it impossible to use ``bin()`` after ``fold()``. [#953]
-
- Added the ``lightkurve.units`` module to ensure "ppt" and "ppm" ar... |
lightkurve__lightkurve-996 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/lightkurve/collections.py:LightCurveCollection.stitch"
],
"edited_modules": [
"src/lightkurve/collections.py:LightCurveCollection"
]
},
"file": "src/lightkurve/coll... | lightkurve/lightkurve | 08c3b1951e1ba52bcb15a7d4291ec469be9f16c8 | ValueError: unmergeable object classes
<!-- Fill in the information below before opening an issue. -->
#### Problem description
Hi!
I'm new to lightkurve. I was running this piece of code (below) and I haven't been able to work out the ValueError. I can't find similar errors within the documentation either. An... | diff --git a/CHANGES.rst b/CHANGES.rst
index 06979104..a6d14ec7 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -4,6 +4,10 @@
- Modified ``LightCurve.bin()`` to partially restore the ``bins`` parameter which
was available in Lightkurve v1.x, to improve backwards compatibility. [#995]
+- Modified ``LightCurveCollect... |
lightstep__lightstep-tracer-python-106 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"lightstep/b3_propagator.py:B3Propagator.inject"
],
"edited_modules": [
"lightstep/b3_propagator.py:B3Propagator"
]
},
"file": "lightstep/b3_propagator.py"
}
] | lightstep/lightstep-tracer-python | d11a9435d0ff53aa05a706731a9f7522f66b3690 | B3 headers value not passed as str
We've instrumented our service with LightStep and OpenTracing but have run into a snag when using B3 propagation.
```python
opentracing.tracer = lightstep.Tracer(
component_name=c.SERVICE_NAME,
access_token=OPEN_TRACE_ACCESS_TOKEN,
tags=tags
)
... | diff --git a/lightstep/b3_propagator.py b/lightstep/b3_propagator.py
index 940a86b..1d4568c 100644
--- a/lightstep/b3_propagator.py
+++ b/lightstep/b3_propagator.py
@@ -36,12 +36,12 @@ class B3Propagator(Propagator):
flags = baggage.pop(_FLAGS, None)
if flags is not None:
- carrier[_FLAGS... |
lightstep__lightstep-tracer-python-109 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"lightstep/http_connection.py:_HTTPConnection.report"
],
"edited_modules": [
"lightstep/http_connection.py:_HTTPConnection"
]
},
"file": "lightstep/http_connection.py"
... | lightstep/lightstep-tracer-python | 1765cbd1266ef37c97bad19cd79941cb549cae14 | Respecting sampling in recorders
What is the intended functionality around the `sampled` span context? I've noticed that it's propagated from parent spans and it's serialized into carriers, but I couldn't find code to read it during recording or sending spans to the collector. | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 96b11a1..4b8a2f2 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,5 +1,9 @@
CHANGELOG.md
+<a name="4.4.8"></a>
+## [4.4.8](https://github.com/lightstep/lightstep-tracer-python/compare/4.4.7...4.4.8)
+* Do not record non-sampled spans (#108)
+
<a name="4.4.7"></a>
##... |
lightstep__lightstep-tracer-python-98 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"lightstep/http_converter.py:HttpConverter.create_runtime"
],
"edited_modules": [
"lightstep/http_converter.py:HttpConverter"
]
},
"file": "lightstep/http_converter.py"
... | lightstep/lightstep-tracer-python | 540768ef727de0c0f00f14325a3b6cbf98add589 | Add the tag `lightstep.hostname`
Hola crew!
I would like to propose the tag 'lightstep.hostname' is appended to this library. It is present in the Go and JavaScript libraries, and would be useful such that we do not have to append that tag to the tracing constructor manually.
See:
- https://github.com/lightst... | diff --git a/lightstep/http_converter.py b/lightstep/http_converter.py
index c17573d..a05c582 100644
--- a/lightstep/http_converter.py
+++ b/lightstep/http_converter.py
@@ -1,8 +1,10 @@
+import socket
+import sys
+
from lightstep.collector_pb2 import Auth, ReportRequest, Span, Reporter, KeyValue, Reference, SpanContex... |
lightstep__otel-launcher-python-88 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "src/opentelemetry/launcher/configuration.py"
}
] | lightstep/otel-launcher-python | 74c8ff755342b47317ac0cbacbeddc1460fcb90a | Tracer endpoint is missing protocol
The default traces endpoint is missing protocol. That makes it not being able to be parsed after [this](https://github.com/open-telemetry/opentelemetry-python/commit/e2a5b0b7439acfc16d474fdd0adb3fca41308e80#diff-5e434ee876fbf8ce33b335b092455e08d3ea6dffd52e3208797fb1c68a906682R202) ch... | diff --git a/src/opentelemetry/launcher/configuration.py b/src/opentelemetry/launcher/configuration.py
index ea04bf3..f5c87ed 100644
--- a/src/opentelemetry/launcher/configuration.py
+++ b/src/opentelemetry/launcher/configuration.py
@@ -49,7 +49,9 @@ from opentelemetry.trace.propagation.tracecontext import (
_env = En... |
lightstep__otel-launcher-python-91 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "src/opentelemetry/launcher/configuration.py"
}
] | lightstep/otel-launcher-python | 74c8ff755342b47317ac0cbacbeddc1460fcb90a | Update the documentation
The current documentation needs to be updated. | diff --git a/README.md b/README.md
index 318f93d..f2cea09 100644
--- a/README.md
+++ b/README.md
@@ -42,7 +42,7 @@ configure_opentelemetry(
service_name="service-123",
service_version="1.2.3",
access_token="my-token",
- span_exporter_endpoint="ingest.lightstep.com:443",
+ span_exporter_endpoint="ht... |
lightstep__otel-launcher-python-93 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "src/opentelemetry/launcher/configuration.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": nul... | lightstep/otel-launcher-python | 74c8ff755342b47317ac0cbacbeddc1460fcb90a | Update launcher to use 1.0.0
Update this launcher to use the new OtelPython 1.1.0 | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 7e96180..a0a7aa9 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,5 +1,12 @@
## Unreleased
+## 1.1.0
+
+- Updated dependencies to 1.1.0
+- Updated import paths
+- Added protocol to default endpoints
+- Updated documentation
+
## 1.0.0
- Updated dependencies to 1.0... |
lilydjwg__nvchecker-246 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"nvchecker_source/container.py:get_container_tag_update_time"
],
"edited_modules": [
"nvchecker_source/container.py:get_container_tag_update_time"
]
},
"file": "nvchecke... | lilydjwg/nvchecker | d35fb3b5bcb21704081a9e1777e91486e52bdd8a | test_container fails
@bianjp
<details>
<summary>Test failure log</summary>
```
$ pytest tests/test_container.py::test_container_with_tag
=========================================================================== test session starts ============================================================================
... | diff --git a/nvchecker_source/container.py b/nvchecker_source/container.py
index 6fec208..fc06505 100644
--- a/nvchecker_source/container.py
+++ b/nvchecker_source/container.py
@@ -109,7 +109,13 @@ async def get_container_tag_update_time(info: Tuple[str, str, str, AuthInfo]):
headers = {
'Authorization': f'Bear... |
lincc-frameworks__nested-pandas-102 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "src/nested_pandas/__init__.py"
}
] | lincc-frameworks/nested-pandas | 82fe541fd7b56c7b37ede4cff9be84da8820a757 | Add `__version__`
We should add the ability to see the package version.
| diff --git a/src/nested_pandas/__init__.py b/src/nested_pandas/__init__.py
index f1a0430..c19ba67 100644
--- a/src/nested_pandas/__init__.py
+++ b/src/nested_pandas/__init__.py
@@ -1,3 +1,4 @@
+from ._version import __version__ # noqa
from .nestedframe import NestedFrame
from .nestedframe.io import read_parquet
@@... |
lincc-frameworks__nested-pandas-105 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/nestedframe/core.py:NestedFrame._resolve_dropna_target"
],
"edited_modules": [
"src/nested_pandas/nestedframe/core.py:NestedFrame"
]
},
"file": "src/n... | lincc-frameworks/nested-pandas | 615258097faba3ced8ae4dbce517d62526c680a1 | Allow Dropna to work on nested columns as base columns
**Bug report**
Current dropna logic assumes that if the user invokes a nested layer, that it then must be trying to dropna within the rows of that nested layer. We should fix dropna to also work with nested columns as base columns, which is particularly useful whe... | diff --git a/src/nested_pandas/nestedframe/core.py b/src/nested_pandas/nestedframe/core.py
index 6142238..b3be03e 100644
--- a/src/nested_pandas/nestedframe/core.py
+++ b/src/nested_pandas/nestedframe/core.py
@@ -201,7 +201,6 @@ class NestedFrame(pd.DataFrame):
"""resolves the target layer for a given set of d... |
lincc-frameworks__nested-pandas-121 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/utils/utils.py:count_nested"
],
"edited_modules": [
"src/nested_pandas/utils/utils.py:count_nested"
]
},
"file": "src/nested_pandas/utils/utils.py"
... | lincc-frameworks/nested-pandas | 307c904b8a148e7d5f95911bf69ef7ec974cede6 | Count Nested: Sort output columns of `by` behavior alphabetically for nested-dask meta
**Feature request**
When `by` is set for count_nested, the output columns are ordered as per value_counts default behavior. This ordering is value-based and thus unpredictable for dask. We should have `by` output columns be sorted a... | diff --git a/src/nested_pandas/utils/utils.py b/src/nested_pandas/utils/utils.py
index a1b0a9f..0f980d2 100644
--- a/src/nested_pandas/utils/utils.py
+++ b/src/nested_pandas/utils/utils.py
@@ -34,8 +34,9 @@ def count_nested(df, nested, by=None, join=True) -> NestedFrame:
)
else:
# this may be abl... |
lincc-frameworks__nested-pandas-123 | [
{
"changes": {
"added_entities": [
"src/nested_pandas/nestedframe/core.py:NestedFrame.from_flat"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"src/nested_pandas/nestedframe/core.py:NestedFrame"
]
},
"file": "src/nested_pandas/... | lincc-frameworks/nested-pandas | 3cd3baaa4c87973af20da3aed87c40f05106cfe1 | Create NestedPandas from a flat source table assuming some columns to be object columns
**Feature request**
It would be really nice if we could generate NestedFrame with both "base" and "nested" columns from a single flat data-frame.
```python
NestedFrame.from_flat(df, base_columns=["a", "b"])
```
It would b... | diff --git a/src/nested_pandas/nestedframe/core.py b/src/nested_pandas/nestedframe/core.py
index f0169b5..285c598 100644
--- a/src/nested_pandas/nestedframe/core.py
+++ b/src/nested_pandas/nestedframe/core.py
@@ -103,6 +103,62 @@ class NestedFrame(pd.DataFrame):
new_df[label] = packed
return new_df
... |
lincc-frameworks__nested-pandas-128 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/series/accessor.py:NestSeriesAccessor.query_flat"
],
"edited_modules": [
"src/nested_pandas/series/accessor.py:NestSeriesAccessor"
]
},
"file": "src/n... | lincc-frameworks/nested-pandas | 71ae3ba21ecca1c1ebd2aaef3e5aa66d51aa5969 | Queries that return empty results can fail
**Bug report**
@AndyTza ran into an issue recently, where he was applying a query on his nested-dask workflow. This query resulting in empty dataframes for a small subset of partitions in the dataset. The nested-pandas implementation of query has issues with this: https://git... | diff --git a/src/nested_pandas/series/accessor.py b/src/nested_pandas/series/accessor.py
index f6253bd..b7936bb 100644
--- a/src/nested_pandas/series/accessor.py
+++ b/src/nested_pandas/series/accessor.py
@@ -223,8 +223,11 @@ class NestSeriesAccessor(Mapping):
The filtered series.
"""
fla... |
lincc-frameworks__nested-pandas-136 | [
{
"changes": {
"added_entities": [
"src/nested_pandas/nestedframe/core.py:NestedFrame.from_lists"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"src/nested_pandas/nestedframe/core.py:NestedFrame"
]
},
"file": "src/nested_pandas... | lincc-frameworks/nested-pandas | 975fbc88de84b6d8d9ae309f71ae3f0b96831818 | Add a shorthand `from_lists` NestedFrame generator function
**Feature request**
In the wild, users will frequently encounter data that is already stored as a dataframe with list columns or a mix of scalar and list columns. For example:
```
ndf = npd.NestedFrame({"a":[1,2,3], "b":[[1,1,1],[2,2,2],[3,3,3]]})
a b... | diff --git a/src/nested_pandas/nestedframe/core.py b/src/nested_pandas/nestedframe/core.py
index a7ec7dc..cb743fc 100644
--- a/src/nested_pandas/nestedframe/core.py
+++ b/src/nested_pandas/nestedframe/core.py
@@ -214,6 +214,69 @@ class NestedFrame(pd.DataFrame):
nested_columns = [col for col in df.columns if c... |
lincc-frameworks__nested-pandas-139 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/nestedframe/core.py:NestedFrame.from_flat"
],
"edited_modules": [
"src/nested_pandas/nestedframe/core.py:NestedFrame"
]
},
"file": "src/nested_pandas/... | lincc-frameworks/nested-pandas | 6e2f433d2b9aeefedb57ffed24ffd71d1b2ff18d | NestedFrame.from_flat treats all non-base columns as nested columns
**Bug report**
Realized this when trying to implement on the dask side, the from_flat logic is flawed in that it will always define nested_columns as all columns not in base_columns, regardless of whether the user specifies a subset of nested_columns ... | diff --git a/src/nested_pandas/nestedframe/core.py b/src/nested_pandas/nestedframe/core.py
index cb743fc..c7f2b38 100644
--- a/src/nested_pandas/nestedframe/core.py
+++ b/src/nested_pandas/nestedframe/core.py
@@ -211,7 +211,8 @@ class NestedFrame(pd.DataFrame):
out_df = df[base_columns][~df.index.duplicated(ke... |
lincc-frameworks__nested-pandas-143 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/series/accessor.py:NestSeriesAccessor.get_flat_series",
"src/nested_pandas/series/accessor.py:NestSeriesAccessor.get_list_series"
],
"edited_modules": [
"sr... | lincc-frameworks/nested-pandas | 0d8c2f35f919bff7245439fc78f75a02bebed377 | Using `nest` accessor raises AttributeError with chunked array
Using the `nest` accessor on a nested series that has chunked arrays in it raises the following error:
```
AttributeError: 'pyarrow.lib.ChunkedArray' object has no attribute 'field'
```
Code that caused it:
```
a["sources"].nest["source_ra"]
``... | diff --git a/src/nested_pandas/series/accessor.py b/src/nested_pandas/series/accessor.py
index b7936bb..cf12b99 100644
--- a/src/nested_pandas/series/accessor.py
+++ b/src/nested_pandas/series/accessor.py
@@ -251,14 +251,18 @@ class NestSeriesAccessor(Mapping):
The flat-array field.
"""
- ... |
lincc-frameworks__nested-pandas-147 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/nestedframe/core.py:NestedFrame.from_flat"
],
"edited_modules": [
"src/nested_pandas/nestedframe/core.py:NestedFrame"
]
},
"file": "src/nested_pandas/... | lincc-frameworks/nested-pandas | 6101d396bc9f3d281393ff3bd6da819d6a473ded | NestedFrame.from_flat doesn't work with pd.DataFrame input
**Bug report**
```python
NestedFrame.from_flat(
pd.DataFrame({'a': [1, 2], 'b': [3, None]}, index=[1, 1]),
base_columns=[],
)
```
```
AttributeError Traceback (most recent call last)
<ipython-input-5-4df41e18d208>... | diff --git a/src/nested_pandas/nestedframe/core.py b/src/nested_pandas/nestedframe/core.py
index c7f2b38..3f28a5e 100644
--- a/src/nested_pandas/nestedframe/core.py
+++ b/src/nested_pandas/nestedframe/core.py
@@ -210,6 +210,10 @@ class NestedFrame(pd.DataFrame):
# drop duplicates on index
out_df = df[... |
lincc-frameworks__nested-pandas-177 | [
{
"changes": {
"added_entities": [
"src/nested_pandas/nestedframe/core.py:_NestResolver._initialize_column_resolver",
"src/nested_pandas/nestedframe/core.py:_identify_aliases",
"src/nested_pandas/nestedframe/core.py:NestedFrame._parse_hierarchical_components"
],
"added_... | lincc-frameworks/nested-pandas | a86a532e6caa3b258da762c3b031af0b52296d12 | Fields within a nest should support non-identifier-like names for eval and query
**Feature request**
Follow up to #174 . A `NestedFrame` may contain both base columns and nested columns (columns containing a nest of fields) which have non-identifier-like names, for example having spaces or dots within them. In Pan... | diff --git a/src/nested_pandas/nestedframe/core.py b/src/nested_pandas/nestedframe/core.py
index 26e0467..eddd80b 100644
--- a/src/nested_pandas/nestedframe/core.py
+++ b/src/nested_pandas/nestedframe/core.py
@@ -3,6 +3,7 @@ from __future__ import annotations
import ast
import os
+import re
import numpy as np
i... |
lincc-frameworks__nested-pandas-181 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/series/packer.py:pack_lists"
],
"edited_modules": [
"src/nested_pandas/series/packer.py:pack_lists"
]
},
"file": "src/nested_pandas/series/packer.py"
... | lincc-frameworks/nested-pandas | 3cb19bd5e63015fbcedab810efd2432361ad49eb | Error when nesting lists
**Bug report**
Something is wrong with packing code, error from lsdb:
```python
import lsdb
cat = lsdb.read_hats('/data3/epyc/data3/hats/catalogs/ztf_dr22/ztf_lc')
lc_columns = ['hmjd', 'mag', 'magerr', 'clrcoeff', 'catflags']
cat = cat.nest_lists(
base_columns=[col for col i... | diff --git a/src/nested_pandas/series/packer.py b/src/nested_pandas/series/packer.py
index 1ea8abb..dedaaca 100644
--- a/src/nested_pandas/series/packer.py
+++ b/src/nested_pandas/series/packer.py
@@ -196,10 +196,34 @@ def pack_lists(df: pd.DataFrame, name: str | None = None, *, validate: bool = Tr
nested_pandas.s... |
lincc-frameworks__nested-pandas-190 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/series/packer.py:view_sorted_series_as_list_array"
],
"edited_modules": [
"src/nested_pandas/series/packer.py:view_sorted_series_as_list_array"
]
},
"... | lincc-frameworks/nested-pandas | 77a816ddfef6489e599f8f463f0855c1e2f90882 | Cannot convert pyarrow.lib.ChunkedArray to pyarrow.lib.Array at view_sorted_series_as_list_array
**Bug report**
Another `Cannot convert pyarrow.lib.ChunkedArray to pyarrow.lib.Array` error, caught when working with ComCam data
```
File ~/.local/lib/python3.11/site-packages/nested_pandas/series/packer.py:272, in view_s... | diff --git a/src/nested_pandas/series/packer.py b/src/nested_pandas/series/packer.py
index dedaaca..73dc58c 100644
--- a/src/nested_pandas/series/packer.py
+++ b/src/nested_pandas/series/packer.py
@@ -293,10 +293,17 @@ def view_sorted_series_as_list_array(
if unique_index is None:
unique_index = series.in... |
lincc-frameworks__nested-pandas-195 | [
{
"changes": {
"added_entities": [
"src/nested_pandas/series/ext_array.py:_is_called_from_func",
"src/nested_pandas/series/ext_array.py:_is_called_from_ext_array_fmter_fmt_strings",
"src/nested_pandas/series/ext_array.py:_DataFrameWrapperForRepresentation.__init__",
"src/ne... | lincc-frameworks/nested-pandas | bbe1866d5dd8fb29857b75ced022e9e53e337b94 | Better string representation for nested elements
**Feature request**
Current representation of nested elements is not so great, we should improve it. It is implemented by `NestedExtensionArray._formatter`
Related to #41
**Before submitting**
Please check the following:
- [ ] I have described the purpose o... | diff --git a/src/nested_pandas/series/ext_array.py b/src/nested_pandas/series/ext_array.py
index f63ca8b..b901e77 100644
--- a/src/nested_pandas/series/ext_array.py
+++ b/src/nested_pandas/series/ext_array.py
@@ -46,7 +46,9 @@ from pandas import Index
from pandas._typing import InterpolateOptions, Self
from pandas.ap... |
lincc-frameworks__nested-pandas-213 | [
{
"changes": {
"added_entities": [
"src/nested_pandas/series/accessor.py:NestSeriesAccessor.with_filled_field"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"src/nested_pandas/series/accessor.py:NestSeriesAccessor"
]
},
"file":... | lincc-frameworks/nested-pandas | d12ec6ecc4c71457823670cc52106283e2c761e0 | Add tooling to embed a base column into a nested column
**Feature request**
It would be nice if we have a way to convert a base column to a field of a nested column, so the values are repeated for each row. Possible interface:
```python
ndf = generate_data(100, 10)
ndf.add_repeated_nested(ndf["a"], name="nested.a")
# ... | diff --git a/docs/tutorials/low_level.ipynb b/docs/tutorials/low_level.ipynb
index 02f815b..e0004a5 100644
--- a/docs/tutorials/low_level.ipynb
+++ b/docs/tutorials/low_level.ipynb
@@ -17,7 +17,12 @@
"cell_type": "code",
"execution_count": null,
"id": "619f088e7ac0f327",
- "metadata": {},
+ "metadata": ... |
lincc-frameworks__nested-pandas-221 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/nestedframe/core.py:NestedFrame.reduce"
],
"edited_modules": [
"src/nested_pandas/nestedframe/core.py:NestedFrame"
]
},
"file": "src/nested_pandas/nes... | lincc-frameworks/nested-pandas | 6b7a45f73c54a9062333877e65eaf246fd276861 | Improve support for `reduce` returning nested information
**Feature request**
We expect users that are applying their functions via reduce to sometimes want more complex outputs. For example, if I'm applying Lombscargle to all lightcurves in my nested dataset, I may want a result that has a max power column, a frequen... | diff --git a/src/nested_pandas/nestedframe/core.py b/src/nested_pandas/nestedframe/core.py
index ab08717..d86c1a4 100644
--- a/src/nested_pandas/nestedframe/core.py
+++ b/src/nested_pandas/nestedframe/core.py
@@ -845,7 +845,7 @@ class NestedFrame(pd.DataFrame):
return None
return new_df
... |
lincc-frameworks__nested-pandas-23 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/series/dtype.py:NestedDtype.construct_from_string"
],
"edited_modules": [
"src/nested_pandas/series/dtype.py:NestedDtype"
]
},
"file": "src/nested_pan... | lincc-frameworks/nested-pandas | 136f2c50571728c795c6e8a08d0df4036353f4d6 | dtype bug when attempting to use dropna on a flat representation
**Bug report**
The following code fails. I'm attempting to call dropna on the flat representation of a nested dataframe, and providing a subset of columns to use for that operation. This operation fails with a confusing error, see below:
```
from neste... | diff --git a/src/nested_pandas/series/dtype.py b/src/nested_pandas/series/dtype.py
index 0d85409..3559b7b 100644
--- a/src/nested_pandas/series/dtype.py
+++ b/src/nested_pandas/series/dtype.py
@@ -70,32 +70,27 @@ class NestedDtype(ExtensionDtype):
Raises
------
- ValueError
+ TypeError... |
lincc-frameworks__nested-pandas-236 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/series/ext_array.py:NestedExtensionArray.flat_length"
],
"edited_modules": [
"src/nested_pandas/series/ext_array.py:NestedExtensionArray"
]
},
"file":... | lincc-frameworks/nested-pandas | b59d701c95bc0a31ec51df2775f8097f1e002b4f | Cannot assign a new column to an empty NestedFrame
**Bug report**
```
from nested_pandas.datasets import generate_data
nf = generate_data(3, 10).iloc[:0]
nf['nested.x'] = []
```
```
ValueError Traceback (most recent call last)
Cell In[7], line 1
----> 1 nf['nested.x'] = []
File ~/proj... | diff --git a/src/nested_pandas/series/ext_array.py b/src/nested_pandas/series/ext_array.py
index 43735db..7536c7f 100644
--- a/src/nested_pandas/series/ext_array.py
+++ b/src/nested_pandas/series/ext_array.py
@@ -798,7 +798,10 @@ class NestedExtensionArray(ExtensionArray):
@property
def flat_length(self) -> i... |
lincc-frameworks__nested-pandas-247 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/nestedframe/core.py:NestedFrame.reduce"
],
"edited_modules": [
"src/nested_pandas/nestedframe/core.py:NestedFrame"
]
},
"file": "src/nested_pandas/nes... | lincc-frameworks/nested-pandas | c771a8b712f14c7721b8b375b1fdf4df338d0a68 | Make it harder to pass a wrong column name to NestedFrame.reduce
**Feature request**
One of the bugs I make in my code all the time is passing a wrong column name to `NestedFrame.reduce(func, *args)`. This makes it a "constant" argument, instead of a variable value/array from the actual data frame. Sometimes this type... | diff --git a/src/nested_pandas/nestedframe/core.py b/src/nested_pandas/nestedframe/core.py
index 36fed5f..69dcfa9 100644
--- a/src/nested_pandas/nestedframe/core.py
+++ b/src/nested_pandas/nestedframe/core.py
@@ -1007,8 +1007,9 @@ class NestedFrame(pd.DataFrame):
columns to apply the function to. See the N... |
lincc-frameworks__nested-pandas-51 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/nestedframe/core.py:NestedFrame.add_nested"
],
"edited_modules": [
"src/nested_pandas/nestedframe/core.py:NestedFrame"
]
},
"file": "src/nested_pandas... | lincc-frameworks/nested-pandas | 109c16c82efcb3b33fc770e552d6e0d1e021c61f | Provide a simpler way to build a nested series from a collection of dataframes
**Feature request**
Currently, `nested_series.apply(lambda x: x)` outputs a new series with `object` dtype. It would be nice if we'd provide a simple way to convert it back to nested series.
Options:
```python
# 1. Does it already wo... | diff --git a/src/nested_pandas/nestedframe/core.py b/src/nested_pandas/nestedframe/core.py
index 1c8e182..71dd33f 100644
--- a/src/nested_pandas/nestedframe/core.py
+++ b/src/nested_pandas/nestedframe/core.py
@@ -3,6 +3,7 @@ from __future__ import annotations
import numpy as np
import pandas as pd
+import pyarrow a... |
lincc-frameworks__nested-pandas-73 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/series/accessor.py:NestSeriesAccessor.to_flat"
],
"edited_modules": [
"src/nested_pandas/series/accessor.py:NestSeriesAccessor"
]
},
"file": "src/nest... | lincc-frameworks/nested-pandas | a196bd63cfa77bdb74ad2a00d1637de5b714c367 | .nest.to_flat() should return pd.ArrowDtyped dataframe
**Bug report**
It is currently returning "native" pandas dtypes which is inconsistent with what `.nest["field"]` returns
**Before submitting**
Please check the following:
- [ ] I have described the situation in which the bug arose, including what code was... | diff --git a/src/nested_pandas/series/accessor.py b/src/nested_pandas/series/accessor.py
index 021fbd7..8a075a7 100644
--- a/src/nested_pandas/series/accessor.py
+++ b/src/nested_pandas/series/accessor.py
@@ -91,13 +91,15 @@ class NestSeriesAccessor(MutableMapping):
index = None
for field in fields:
... |
lincc-frameworks__nested-pandas-79 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/series/accessor.py:NestSeriesAccessor.get_flat_index"
],
"edited_modules": [
"src/nested_pandas/series/accessor.py:NestSeriesAccessor"
]
},
"file": "s... | lincc-frameworks/nested-pandas | 725da0cb2664febac6a8e0fd7e352343c7b5d62f | Support multiindex
**Bug report**
Currently, `packer` module doesn't support multiindex frames and series. It should be fixed.
```python
from nested_pandas.series.packer import pack_flat
df = pd.DataFrame({
"survey": ["ztf"] * 100 + ["lsst"] * 100,
"id": np.r_[np.repeat(np.arange(10), 10), np.repeat... | diff --git a/src/nested_pandas/series/accessor.py b/src/nested_pandas/series/accessor.py
index 8a075a7..3bd967b 100644
--- a/src/nested_pandas/series/accessor.py
+++ b/src/nested_pandas/series/accessor.py
@@ -182,10 +182,10 @@ class NestSeriesAccessor(MutableMapping):
def get_flat_index(self) -> pd.Index:
... |
lincc-frameworks__nested-pandas-90 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/nested_pandas/series/accessor.py:NestSeriesAccessor.to_lists",
"src/nested_pandas/series/accessor.py:NestSeriesAccessor.to_flat"
],
"edited_modules": [
"src/nested_pandas... | lincc-frameworks/nested-pandas | 81979076cfb33027caf29c349f40098b29ee9d9e | Struct_array casting sometimes produces a ChunkedArray
**Bug report**
There are cases we see on the nested-dask side currently where the accessor code fails. Take for example this:
```
# Load some ZTF data
catalogs_dir = "https://epyc.astro.washington.edu/~lincc-frameworks/half_degree_surveys/ztf/"
object_ndf ... | diff --git a/src/nested_pandas/series/accessor.py b/src/nested_pandas/series/accessor.py
index 3bd967b..85ca6dc 100644
--- a/src/nested_pandas/series/accessor.py
+++ b/src/nested_pandas/series/accessor.py
@@ -1,6 +1,7 @@
# Python 3.9 doesn't support "|" for types
from __future__ import annotations
+from collections... |
lincc-frameworks__nested-pandas-91 | [
{
"changes": {
"added_entities": [
"src/nested_pandas/series/accessor.py:NestSeriesAccessor.with_field",
"src/nested_pandas/series/accessor.py:NestSeriesAccessor.with_flat_field",
"src/nested_pandas/series/accessor.py:NestSeriesAccessor.with_list_field",
"src/nested_pandas/... | lincc-frameworks/nested-pandas | 41cce93566304e9d391ffae8876f664884141240 | NestedAccessor's .pop and .pop_field() do the same
**Feature request**
It is confusing, we should remove `.pop_field`
**Before submitting**
Please check the following:
- [ ] I have described the purpose of the suggested change, specifying what I need the enhancement to accomplish, i.e. what problem it solves.... | diff --git a/docs/tutorials/low_level.ipynb b/docs/tutorials/low_level.ipynb
index 7672662..307366c 100644
--- a/docs/tutorials/low_level.ipynb
+++ b/docs/tutorials/low_level.ipynb
@@ -17,12 +17,7 @@
"cell_type": "code",
"execution_count": null,
"id": "619f088e7ac0f327",
- "metadata": {
- "ExecuteTime"... |
lincolnloop__goodconf-49 | [
{
"changes": {
"added_entities": [
"goodconf/__init__.py:_fieldinfo_to_str"
],
"added_modules": [
"goodconf/__init__.py:_fieldinfo_to_str"
],
"edited_entities": [
"goodconf/__init__.py:GoodConf.generate_markdown"
],
"edited_modules": [
"g... | lincolnloop/goodconf | 96b8c8ff3da484ba029c78434be719f00d0d07d5 | Markdown generation issues in v5
We use `goodconf` and `cog` to generate a list of config values for lincolnloop/django-layout.
After upgrading to v5, I'm seeing the following diff
```diff
63c63
< * type: `Literal['development', 'dev', 'production']`
---
> * type: `typing.Literal['development', 'dev', 'pr... | diff --git a/CHANGES.rst b/CHANGES.rst
index 076390a..0df2d34 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -3,9 +3,10 @@ Change Log
==========
5.0.1 (Unreleased)
-==================
+========================
- Support reading TOML files via ``tomllib`` on Python 3.11+
+- Update Markdown generation, so that outp... |
lincolnloop__goodconf-51 | [
{
"changes": {
"added_entities": [
"goodconf/__init__.py:Field"
],
"added_modules": [
"goodconf/__init__.py:Field"
],
"edited_entities": null,
"edited_modules": null
},
"file": "goodconf/__init__.py"
}
] | lincolnloop/goodconf | 501ee693ab92816e6718c54a4026f4e82350cd52 | Using extra keyword arguments on `Field` is deprecated
The custom `initial` kwarg is a problem
```
/usr/local/lib/python3.11/site-packages/pydantic/fields.py:814: PydanticDeprecatedSince20: Using extra keyword arguments on `Field` is deprecated and will be removed. Use `json_schema_extra` instead. (Extra keys: 'i... | diff --git a/.gitignore b/.gitignore
index 376773d..c9e33a3 100644
--- a/.gitignore
+++ b/.gitignore
@@ -8,3 +8,4 @@ htmlcov
env
venv
__pycache__
+uv.lock
diff --git a/goodconf/__init__.py b/goodconf/__init__.py
index d2472ad..1024231 100644
--- a/goodconf/__init__.py
+++ b/goodconf/__init__.py
@@ -16,7 +16,7 @@ fro... |
line__line-bot-sdk-python-233 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"linebot/models/events.py:Event.__init__",
"linebot/models/events.py:MessageEvent.__init__",
"linebot/models/events.py:FollowEvent.__init__",
"linebot/models/events.py:UnfollowEve... | line/line-bot-sdk-python | b51ffbb5fd7847b34844134a43932140eae25ed6 | mode property added to webhook event
https://developers.line.biz/en/news/2019/12/#mode-property-added-to-messaging-api-webhook-events-2019-12-17 | diff --git a/README.rst b/README.rst
index a0c2786..b576a2f 100644
--- a/README.rst
+++ b/README.rst
@@ -303,7 +303,7 @@ delete\_rich\_menu(self, rich\_menu\_id, timeout=None)
Deletes a rich menu.
https://developers.line.biz/en/reference/messaging-api/#delete-rich-menu
-
+
.. code:: python
line_bot_... |
line__line-bot-sdk-python-272 | [
{
"changes": {
"added_entities": [
"linebot/api.py:LineBotApi.get_group_summary",
"linebot/api.py:LineBotApi.get_group_members_count",
"linebot/api.py:LineBotApi.get_room_members_count"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
... | line/line-bot-sdk-python | 1753128db9654bf95fad8d13e06135a42fe40abf | Messaging API update for June 2020
News: https://developers.line.biz/en/news/2020/06/10/messaging-api-update-june-2020/
New endpoints are added to the Messaging API
- [ ] [Get group summary](https://developers.line.biz/en/reference/messaging-api/#get-group-summary)
- [ ] [Get members in group count](https://develo... | diff --git a/README.rst b/README.rst
index ccf2c2c..368f99a 100644
--- a/README.rst
+++ b/README.rst
@@ -196,6 +196,20 @@ https://developers.line.biz/en/reference/messaging-api/#get-profile
print(profile.picture_url)
print(profile.status_message)
+get\_group\_summary(self, group\_id, timeout=None)
+^^^^^^^^... |
line__line-bot-sdk-python-274 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"linebot/models/flex_message.py:BubbleContainer.__init__"
],
"edited_modules": [
"linebot/models/flex_message.py:BubbleContainer"
]
},
"file": "linebot/models/flex_messa... | line/line-bot-sdk-python | 1753128db9654bf95fad8d13e06135a42fe40abf | Can't send FlexMessage with Hero block
## System Informations
* Python version: 3.7.7
* SDK version: 1.16.0
* OS: macOS Mojave 10.14.3
## Expected Behavior
The docs say that box or image can be used for hero block.
https://developers.line.biz/en/reference/messaging-api/#bubble
> Hero block. Specify a box or ... | diff --git a/linebot/models/flex_message.py b/linebot/models/flex_message.py
index afccc3e..bd95169 100644
--- a/linebot/models/flex_message.py
+++ b/linebot/models/flex_message.py
@@ -109,7 +109,12 @@ class BubbleContainer(FlexContainer):
self.size = size
self.direction = direction
self.head... |
line__line-bot-sdk-python-276 | [
{
"changes": {
"added_entities": [
"linebot/api.py:LineBotApi.get_group_summary",
"linebot/api.py:LineBotApi.get_group_members_count",
"linebot/api.py:LineBotApi.get_room_members_count"
],
"added_modules": null,
"edited_entities": [
"linebot/api.py:LineBot... | line/line-bot-sdk-python | 1753128db9654bf95fad8d13e06135a42fe40abf | WebhookHandler.add cannot cope with handler function with *args in its parameters
## Problem
<!-- Describe a clear and concise description of what the problem is. -->
When we add a function with `*args` to the WebhookHandler,
WebhookHandler calls the function with 0 args.
It causes some problems when we use ordinar... | diff --git a/.travis.yml b/.travis.yml
index e30565b..7e26930 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -8,6 +8,7 @@ python:
- "3.5"
- "3.6"
- "3.7"
+ - "3.8"
install: pip install tox-travis
diff --git a/README.rst b/README.rst
index ccf2c2c..368f99a 100644
--- a/README.rst
+++ b/README.rst
@@ -196,6... |
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