sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
0407a752b6d0459ed827afb9d5ff12317a6a5972bfc68a1a0df5a7a17a3dbe47 | SPSS | 1,826 | 63 | GET DATA /TYPE=TXT
/FILE="H:\MT_all(afterqujizhi)\feedback\feedback2\OCD\fb4spss.csv"
/ENCODING='Locale'
/DELCASE=LINE
/DELIMITERS=","
/ARRANGEMENT=DELIMITED
/FIRSTCASE=2
/IMPORTCASE=ALL
/VARIABLES=
subject F2.0
goNoWin F9.7
nogoNoWin A9
goPun F10.7
nogoPun F9.7
goWin F10.7
nogoWin F9.7
... |
928de37d3d583462bca46d174511efd525ef1f195fa57120253939305ab6e4a8 | SPSS | 3,905 | 102 | * Encoding: UTF-8.
GET DATA /TYPE=TXT
/FILE="F:\PIT\correct_all\ISPC_hc_ocd_compare.csv"
/ENCODING='Locale'
/DELCASE=LINE
/DELIMITERS=","
/ARRANGEMENT=DELIMITED
/FIRSTCASE=2
/IMPORTCASE=ALL
/VARIABLES=
subject F3.0
group F1.0
icpc_pfc_win_contra F11.8
icp... |
f1851f8ef7831d9f0d660b8a0937007df2f967d45ca18b329c86d9b2622b8a4b | SPSS | 3,982 | 109 | GET DATA /TYPE=TXT
/FILE="F:\PIT\correct_all\OCD\results\ICPC_contra_ipsiocd.csv"
/ENCODING='Locale'
/DELCASE=LINE
/DELIMITERS=","
/ARRANGEMENT=DELIMITED
/FIRSTCASE=2
/IMPORTCASE=ALL
/VARIABLES=
subject F2.0
icpc_pfc_win_contra A11
icpc_pfc_win_ipsi A11
icpc_pfc_win_nogo A11
icpc_pfc_avoid_co... |
72f39d22d5da8a5d3a46dd3281611a7343e834a39b4937efb00493b04fb28474 | SPSS | 4,440 | 126 | * Encoding: UTF-8.
GET DATA /TYPE=TXT
/FILE="F:\PIT\correct_all\HC\results\ICPC_contra_ipsiocd0.4.65plottest.csv"
/ENCODING='Locale'
/DELCASE=LINE
/DELIMITERS=","
/ARRANGEMENT=DELIMITED
/FIRSTCASE=2
/IMPORTCASE=ALL
/VARIABLES=
subject F2.0
icpc_pfc_win_contra A11
icpc_pfc_win_ipsi A11
icpc_pfc... |
1a155622789ed390edaca494d87181584c8d0b3c0df540ec72fdd08ee6abdb73 | SPSS | 7,506 | 237 | * ============================================================
* 0) Read the original long-format Excel file
* ============================================================.
GET DATA
/TYPE=XLSX
/FILE="H:\mt_behavalluse\EEGmixmodel\EEGdatamixmodel_withgroup.xlsx"
/SHEET=index 1
/CELLRANGE=FULL
/READNAMES=ON.
C... |
7180dcae56b467aefb8421ba372e1db81718f4bac9d9a0b64c849cc2c2fe4d58 | Scala | 420 | 10 | import org.apache.spark.SparkConf
import org.apache.spark.SparkContext
sc.stop()
val conf = new SparkConf().setMaster("local[2]").setAppName("dmed5714").set("spark.cores.max", "8")
//val conf = new SparkConf(true).setMaster("spark://129.241.180.233:7077").setAppName("promec2").set("spark.cores.max", "8")
val sc = new S... |
c71bb331afbc5e87e19b4ccaabcdd4d919f7c3bb4143f58e6541d88623f2c144 | Shell | 53 | 2 | #!/bin/sh
exec "$0"/../ghc --interactive ${1+"$@"}
|
8b21a0b63c7c027ac4ffd407702ec5da623ffdca0cbfb895d6e9724b09b19d70 | Shell | 61 | 3 | #!/bin/bash
flirt -applyxfm -in $1 -ref $1 -init $2 -out $3
|
99494db232e67bf1ef81046125863228612151df87c3221cad0372679e294f2a | Shell | 70 | 1 | nnUNetv2_train $1 3d_fullres 0 -tr nnUNetTrainer_10epochs -num_gpus 2
|
2b41678e76e39d4eaf1bbd7b5e7eb4ba76bcee465572fd8adafa2dcaa505a665 | Shell | 71 | 6 | #!/bin/bash
. /app/SetupEnv.sh
cd /tmp
exec python3 /app/run.py "$@"
|
378b03b45126a7c2625a0dd5d4158cd9ebfdeb6f2047d72e0cbd10630081c91a | Shell | 76 | 3 | #!/bin/bash
nohup perl map2genome.pl cap3_5654.fna CP000814.gbk_in.fasta &
|
a7c2a272550f584e1a3a56a606483b94c8601974879eef0fff2a6b536be12ffe | Shell | 77 | 7 | #!/bin/sh
$1 $2
$1 $2
$1 $2
tex4ht $2
t4ht $2 $3 # -d~/WWW/temp/ -m644
|
7c57bb25803c3e35ddac9851c47466a711cfea9326ead974d6ed00d4ebf4c0ed | Shell | 87 | 3 | #!/bin/bash
gvim app/main.js app/shaders/*.* index.html Abubu/*.* # Abubu/shaders/*.*
|
d2d911378ea4859703ee8d7861b8ba3f7840bbce3c6accb5ba75d3d39c074876 | Shell | 87 | 3 | #!/usr/bin/env bash
test ${RUN_FIXUID} && eval $( fixuid -q )
python -m steinbock "$@"
|
ba769cbf5b8c06fadc94d9829c1af7d9397518a780803396f93fc944e57b4592 | Shell | 88 | 4 | #!/bin/sh
P=`pwd`/libatomic_ops-install
cd libatomic_ops-*[0-9]
./configure --prefix=$P
|
60dd21e1d31e774e193b1ebff3c2a7a0571c47e8a05c7bad9ce4cb9835f27d50 | Shell | 94 | 2 | srun --ntasks=1 --mem-per-cpu=4G --time=00:30:00 --qos=devel --account=nn9036k --pty bash -i
|
5a5f22dd7e18aeee80842654490d7c04580c8b545af1211efb840dfe68c8b2b4 | Shell | 95 | 3 | #!/bin/sh
export MYPYPATH=./stubs
mypy --allow-redefinition --python-executable python3 navis/
|
b6b8c3d125f177ad5c9e56129c9a0cc93bb8aa248c53b449c023075baa1d5670 | Shell | 104 | 3 |
python ./test_dataset_model.py --dataset_mode 2afc --model lpips --net alex --use_gpu --batch_size 50
|
7a60dfd31772c91095b9eb221a6db132a847756827061cbda36a7f6a126d1c63 | Shell | 108 | 8 | #!/bin/bash
cd examples/Flockers
python run.py &
PID=$!
sleep 3
curl localhost:8521 | grep Boids
kill $PID
|
17b5b9395251bed824aa59c45fe332303eab03e3792abde91c9bc98a29aee993 | Shell | 111 | 1 | java -classpath ../jaligner.jar:../matrices.jar gnu.bioinformatics.jaligner.SW hbb-horse.fasta hbb-human.fasta
|
ddc7de6da963ee3ca38113eb9d9b09ffda8c6070633e77190de1fed60e9af906 | Shell | 121 | 3 | #!/bin/sh
curl -fsLO https://raw.githubusercontent.com/scijava/scijava-scripts/master/travis-build.sh
sh travis-build.sh
|
e2e0c0831ea06ff181c762006fc1212de2310d17fcba8d6d6545933eb3f84f5d | Shell | 127 | 2 | $HOME/gopath/bin/drive push --no-prompt -force -verbose /trd-project1/NS9036K/NORSTORE_OSL_DISK/NS9036K/promec/promec/Elite/
|
1e96e878a9f25653670c58016a312fd3a4189a9f622561d768aced654b6e8eec | Shell | 139 | 3 | # trail 196 was the best trial
mv hyperparams.tsv optimization_backup/hyperparams_backup.tsv
cp hyperparams/params_196.tsv hyperparams.tsv
|
d6c7b035c47c67b8075a7dbb382eaf058024d2d5a2f2194e03d7b42d03e94760 | Shell | 154 | 2 | #!/bin/sh
grep -A 5 "{AFG" $1 | grep -E "acc|clr" | cut -d':' -f2 | tr -d '(' | tr -d ')' | paste -s -d" \n" | tr ' ' ',' | awk -F, '{print $1,$3,$4}'
|
3213b6ae331aa539fa1ac3268fbc6176fbcce0892d001400a23845c4704a0dfd | Shell | 155 | 7 | #!/bin/bash
DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
mkdir $DIR/.qsuboutput
mv $DIR/*.e* $DIR/.qsuboutput/
mv $DIR/*.o* $DIR/.qsuboutput/
|
6082f3c85a9a817a4549bca6c6cf834b0fd37256444ad8bb60dc901f3621219c | Shell | 156 | 7 | #!/bin/sh
export DEFAULT_PROJECT_PATH=`pwd`
# Launch inspection tool
IDEA_BIN_HOME="$( cd "$( dirname "$0" )" && pwd )"
$IDEA_BIN_HOME/idea.sh inspect $*
|
a9f38f0d92b402ffb4a4a610dd8f60ed89c77f81aba12eb31c3f7f8006f04c02 | Shell | 159 | 10 | #!/bin/bash
sftp -P 12 ash022@login.nird.sigma2.no << EOF
ls TIMSTOF/Raw/*/*
bye
EOF
sftp -P 12 ash022@login.nird.sigma2.no << EOF
ls Qexactive/Raw
bye
EOF
|
c5565ea11a3b8abc53c6fefbed6c726fe868b7896110834ee629f3ea470bac71 | Shell | 164 | 15 | #!/bin/bash
awk 'NR==FNR {
for(i=1;i<=NF;i++)A[NR,i]=$i
next
}
{
for(i=1;i<=NF;i++){
t=0
for(j=1;j<=NF;j++)
t+=A[j,i]*$j
printf t FS
}
print ""
}' $2 $1
|
bb32ed3d168157461da6ff34bae2dfc9787a4de029d8746bc4c343609ae1ea90 | Shell | 166 | 8 | #!/bin/zsh
counter=1
while [ $counter -le 10 ]
do
python run_network_simulations.py -t "deg_vs_del" -m "stp_synapse" -s ${counter}
counter=$((counter + 1))
done
|
3645ef04fda7a428083a50c046f2a7539c51261b27cf233ae46ec4c25b7f6c16 | Shell | 187 | 8 | #https://unix.stackexchange.com/a/249238
while true
do
touch ./lastwatch
sleep 10
find $HOME/PD/HF -name "*.raw" -cnewer ./lastwatch -exec bash mqrun.sh {} \;
done
|
005fa6951c5c2472c7f8bd92a5b7feec51eff76a2f89f6dfb598be4b9ad0e6e8 | Shell | 189 | 10 | #!/bin/bash
SCRIPTPATH="$( cd "$(dirname "$0")" ; pwd -P )"
NAME=v2c_docker
docker build -t $NAME .
docker tag $NAME ghcr.io/ai-med/$NAME:latest
docker push ghcr.io/ai-med/$NAME:latest
|
c979a11fe7ca12fee0703bdc6dceb09d8846e170d3381511a79fd2c9c5fa7649 | Shell | 190 | 7 | #!/bin/sh
texexec --arg="ht-1=$2" --use=tex4ht --dvi --nobackend $5 $1
tex4ht -f/$1 -i~/tex4ht.dir/texmf/tex4ht/ht-fonts/$3
t4ht -f/$1 $4 ## -d~/WWW/temp/ -m644
|
f84b02735e6f3b6937d6ee44f6713f5ee9f91c7e481e738874197413c538f604 | Shell | 190 | 3 | #!/bin/sh
../flex/flex_sdk/bin/mxmlc -source-path echo-nest-flash-api/src flash-audio/src MP3FileReferenceLoaderLib/src soundtouch-as3/src -- echo-nest-flash-api/examples/remix/remix.mxml
|
a4d7a6f584266a9f8259c2a0c409a0d3dc978cdeb40b48f733cd5569cf2b6dab | Shell | 194 | 7 | for a in *; do mv $a `basename $a`.NEW; done
#for a in *.mp; do mv $a `basename $a mp`mpN; done
for a in *.NEW
do sed -e 's/featpost3D/featpost3Dplus2D/' $a > `basename $a .NEW`
done
rm *.NEW
|
f6c0d7c39f4cf813383fd31dc0f74eb39521ef137df10b559333115683b825a9 | Shell | 198 | 6 | #!/bin/bash
DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
dt=$(date '+%d/%m/%Y %H:%M:%S');
printf "$dt\n" >> $DIR/../analysis_notes.txt
printf "$@\n=====\n" >> $DIR/../analysis_notes.txt
|
a532e0465b4475ad3c947c1ff96f80b493a752a3de8d1c56d23c02059a954a8a | Shell | 217 | 11 | #!/bin/bash
sleep 5s
PIDqsub=$1
statusqsub=$(qstat $PIDqsub | awk -F' ' '{print $5}' | tail -1)
while [ "$statusqsub" != "C" ]
do
sleep 60s
statusqsub=$(qstat $PIDqsub | awk -F' ' '{print $5}' | tail -1)
done
exit 0
|
40dce67da601556304f5527d18dd7761a314f8a1f97ce4ad231e6101a4e2213c | Shell | 218 | 13 |
#support the system("shell command") under mswin
# a copy of nrnsys.sh but without stdout redirection
N="`$1/bin/cygpath -u $1`"
export N
shift
PATH=$N/bin:/usr/bin:$PATH
export PATH
eval "$*"
echo 1 > tmpdos1.tmp
|
a3af108c9ca5a9a0873379ee90006823bbe5ab0dfb8f936713255d7a8fa0b152 | Shell | 219 | 10 | #!/bin/bash
#
# wav2mp3
#
for i in *.wav; do
#out=$(ls $i | sed -e 's/.wav//g')
#out=$(echo $i | sed -e 's/.wav$//')
#lame -h -b 192 "$i" "$out.mp3"
lame -h -b 192 "$i" "${i%.wav}.mp3"
done
|
3dd03c078994e09597b37b064b4f144bca72cd4e0374a7c41ba30d395e0661f0 | Shell | 228 | 12 | #!/bin/bash
set -euox pipefail
git restore ../README.md
tmpfile=`mktemp`
cp ../README.md $tmpfile
tail -n +5 $tmpfile > ../README.md
make latexpdf
cp _build/latex/hippunfold.pdf hippunfold_manual.pdf
git restore ../README.md
|
b9e35526efc0ff6ed784032ed04e89f391328a99536b7e9c4f78de23b13be363 | Shell | 229 | 6 | PIDqsub=$(echo "$matlabVersion" '-nosplash -nodesktop -r "run('"'"$DIR/CURRENTSCRIPT"'"');"' | qsub -o /dev/null -q $jobtype -l walltime=$walltime,mem=$memory)
echo $PIDqsub
sh $DIR/scriptTemplates/.waitForQsubPID.sh $PIDqsub
|
dea7c51f307a9547e78fcca147ff3c6a71efa7c1b312aa2317dcb6c69b6f3a10 | Shell | 231 | 7 | #!/bin/bash
#SBATCH --mem=32g
#SBATCH -c 2
#SBATCH --output=parse_multiple_chains.out
source activate mlfold
python parse_multiple_chains.py --input_path='../PDB_complexes/pdbs/' --output_path='../PDB_complexes/parsed_pdbs.jsonl'
|
7460a1842c7731aa3dc2a17838874fd5235448fe99ec70954ebf7d48c47c75eb | Shell | 249 | 10 | perl multi_layer_perceptron.pl irisnrm.mix.txt 4 300
perl match_column.pl irisnrm.mix.txt.out irisnrm.mix.txt.mis.out
perl online_ftr_sel_otp.pl irisnrm.mix.txt 4 100
perl rank.pl irisnrm.mix.txtofs.txt
cat irisnrm.mix.txtofs.txt.out
|
117decbab85f6a2eb9d149468ada9605f31b9b2e3bd54cd01891c81a7db3c0ad | Shell | 250 | 7 |
TRIAL=${1}
NET=${2}
mkdir checkpoints
mkdir checkpoints/${NET}_${TRIAL}
python ./train.py --use_gpu --net ${NET} --name ${NET}_${TRIAL}
python ./test_dataset_model.py --use_gpu --net ${NET} --model_path ./checkpoints/${NET}_${TRIAL}/latest_net_.pth
|
aa43183448ee8fb5313391bf9a25e76b235d168a9a8f01526f0dd9ee626871e3 | Shell | 258 | 11 | #!/bin/bash
#SBATCH --nodes=1
#SBATCH --mem-per-cpu=30g
#SBATCH --cpus-per-task=1
#SBATCH --time=20:00:00
#SBATCH --account=forger0
#SBATCH --partition=gpu
#SBATCH --mail-type=NONE
#SBATCH --gres=gpu:1
#SBATCH --job-name=neuronephys
srun mainS $@
|
e03f47c937f986976db0229c368eac82b0608ad8c363813af4747dddc0537f5b | Shell | 264 | 10 | #!/bin/sh
git_info_source="/aida/build/AIDAmri_git_information.txt"
git_info_target="/aida/DATA/AIDAmri_git_information.txt"
if [ -r "$git_info_source" ] && [ -d "/aida/DATA" ]; then
cp "$git_info_source" "$git_info_target" 2>/dev/null || true
fi
exec "$@"
|
867eab2e2cf03ac55421336e0c20afe72e74ad7f5f0a2087eae61555f65a2824 | Shell | 290 | 10 | #!/bin/bash
while getopts f:d: flag
do
case "${flag}" in
f) file=${OPTARG};;
d) dist=${OPTARG};;
esac
done
awk -v OFS='\t' '$(NF-1) < 0.1 {print $1,$2,$3}' $file |bedtools sort -i - |bedtools merge -d $dist -c 1 -o count |awk -v OFS='\t' '$NF > 1 {print $1,$2,$3}'
|
a9be0a6c6487150e060b3aada0d61cd3e304afa95f3d5a06fee5dae7bf58e043 | Shell | 293 | 7 |
TRIAL=${1}
NET=${2}
mkdir checkpoints
mkdir checkpoints/${NET}_${TRIAL}_tune
python ./train.py --train_trunk --use_gpu --net ${NET} --name ${NET}_${TRIAL}_tune
python ./test_dataset_model.py --train_trunk --use_gpu --net ${NET} --model_path ./checkpoints/${NET}_${TRIAL}_tune/latest_net_.pth
|
1c0430fcbb9d086e3e0e33b63557939ce96fb9f26e02568d5f18a38fabd6b6ef | Shell | 296 | 10 | #!/bin/sh
#
# Run cytoscape from a jar file
# this is a linux-only version
#-------------------------------------------------------------------------------
#export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:./plugins
java -Dswing.aatext=true -Xmx512M -jar cytoscape.jar cytoscape.CyMain -p plugins "$@"
|
94d78bf029a4b2b35ed1bf5ff7b05ab1811aa29544b8fe1d9698a639f618d503 | Shell | 310 | 9 | #!/usr/bin/env bash
set -euo pipefail
cd "$(dirname "$0")/.."
python tool/package_audit.py
python tool/evaluate_saved_predictions.py
python src/infer.py --backend baseline --text "打开客厅灯"
if [[ "${1:-}" == "--train-bert" ]]; then
python -m src.train_supervised --config configs/model_config.yaml
fi
|
bff0e26c8fdda53b1a44792d84422a6560096af9c515994e0fc5947e3489fceb | Shell | 317 | 5 | for fileToSmooth in $(ls $workingDir | grep $indForFilesToSmooth.*[0-9].nii.gz | cut -f 1 -d '.'); do
echo "smoothing data for $fileToSmooth.nii.gz using a kernel width of Sigma = $kernelSigma ..."
fslmaths $workingDir/$fileToSmooth.nii.gz -s $kernelSigma $workingDir/$fileToSmooth.smooth.nii.gz
echo "done."
done
|
18f701c69fb71c15058a6bb9edbaea0a5e78fa818317fabb4a678cb2e30e2639 | Shell | 321 | 15 | #!/bin/bash
IN_DIR=$1
OUT_DIR=$2
for filename in "$IN_DIR"/*; do
if [[ ! "$filename" =~ ".reduced" ]]; then
snp_out=$(basename -- "${filename%.*}.vcf")
# snp_snites
if [ ! -f "$OUT_DIR/$snp_out" ]; then
snp-sites -v -o "$OUT_DIR/$snp_out" "$filename"
fi
fi
done... |
1393dfc8d129ba22c43d16e4f953383f216010f206c6a8479069f1960549a78d | Shell | 327 | 11 | #!/bin/sh
if [ "`(which wget) 2> /dev/null | grep -v '^no'`" != "" ]; then
wget $1
elif [ "`(which curl) 2> /dev/null | grep -v '^no'`" != "" ]; then
curl -O $1
elif [ "`(which fetch) 2> /dev/null | grep -v '^no'`" != "" ]; then
fetch $1
else
echo "No wget/curl/fetch found in $PATH -- aborting."
exi... |
c48d0258ff46df20f516ff4c4d4a272e66ebeb87b77df8a2b77c7f6469ec9f48 | Shell | 328 | 18 | #!/bin/bash
err(){
echo $*
exit -1
}
[ -f "$GENOME" ] || err "GENOME=\"$GENOME\" not found"
make -j -f qualeval.mk `echo $* | sed -e 's/.bam/.bam.bai/g'`
for rd in `grep '^>' $GENOME | cut -c2- | cut -f1 -d' '`; do
mkdir -p plots/$rd
for f in $*; do
samtools view $f $rd | cut -f 4,9 > plots/$rd/$f.dat
don... |
8a994bbadd9d8fd57a6cd8ddbd74017711f31db11f89c52304c56da510815090 | Shell | 333 | 8 |
TRIAL=${1}
NET=${2}
mkdir checkpoints
mkdir checkpoints/${NET}_${TRIAL}_scratch
python ./train.py --from_scratch --train_trunk --use_gpu --net ${NET} --name ${NET}_${TRIAL}_scratch
python ./test_dataset_model.py --from_scratch --train_trunk --use_gpu --net ${NET} --model_path ./checkpoints/${NET}_${TRIAL}_scratch/late... |
36630b3369e812b84185ea30629f61c1c4334a0842ee6824cedd2eda66979a61 | Shell | 344 | 15 | #!/bin/bash
set -euox pipefail
git restore index.md conf.py
cp supp_methods_index.md index.md
cp supp_methods_conf.py conf.py
make clean
make latexpdf
cp _build/latex/hippunfoldalgorithmicdetails.pdf hippunfold_algorithmic_details.pdf
git restore index.md conf.py
#git add hippunfold_manual.pdf
#git commit -m "upda... |
ccf89102c438fc9723905632e651e8ded41e74739a41df7ee86d19daaef2352a | Shell | 353 | 14 | #!/bin/sh
#SBATCH -N 1
#SBATCH --cpus-per-task=2
#SBATCH --mem=1GB
#SBATCH --partition=veryshort
#SBATCH -o input_brainageR.out
#SBATCH -e input_brainageR.err
#SBATCH -J input_brainageR
module load R
module load fsl
module load matlab
bash /home/jcole/brain_age/BRAIN_AGE_T1/brainageR/software/brainageR -f input.nii ... |
fb641bbda40844ed4b6bcb38ef2da0f90bd0965ce79afeb65a0828c2b3798aab | Shell | 366 | 18 | #!/bin/bash
# Anoushka Joglekar and Alex Stein
# August 2019
## Check if bedtools and samtools are loaded
if which bedtools >/dev/null; then
echo bedtools found in path
else
echo bedtools does not exist in path
exit 127
fi
if which samtools >/dev/null; then
echo samtools found in path
else
echo sa... |
3540f64202fbc82d50d9b8062705f9bf0abf919ee2504158e958f7462d44ed10 | Shell | 381 | 16 | #!/bin/bash
#
# create_scores_ path_to_encode_directories comparison_species
ENCODE="$1"
REGION="ENm010"
REFSPECIES="human"
SECSPECIES=$2
THISDIR=`dirname $0`
lastz_D --inferonly=${THISDIR}/create_scores_file.control \
${ENCODE}/${REGION}/${REFSPECIES}.${REGION}.fa \
${ENCODE}/${REGION}/${SECSPECIES}.${REGIO... |
28378f7227192f66c465982d275ac2d08831ae82eb404502b365075417acdcf8 | Shell | 382 | 14 | #!/usr/bin/env bash
# download models
models/download_models.sh
# convert models
python3 torch_to_pytorch.py --model models/vgg_normalised.t7
python3 torch_to_pytorch.py --model models/decoder.t7
# preprocess paintings
python3 preprocess_style_imgs.py
# preprocess ImageNet (=create Stylized-ImageNet)
python3 prepro... |
bcdddf15a93cc313cb09ea286418774b660e8a96976a9e77560d8b96ba87ec88 | Shell | 383 | 13 | #!/bin/bash
DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
DIR=$DIR/..
# locate raw and processed data directories
while IFS='' read -r line || [[ -n "$line" ]]; do # loop over lines
for i in $(echo $line | sed "s/,/ /g"); do # loop over comma separation
eval $i
done
done < "$DIR/configs/.dataPat... |
c62edfe7085aa506d211aea2612e47bfcf1a662eeb872dab6c03ff09f368b155 | Shell | 383 | 18 | #!/bin/tcsh
## Set up the sge queue required defaults
#$ -r n
#$ -l h_vmem=10G
#$ -V
#$ -j y
#$ -cwd
#$ -q global
module load fsl
module load matlab
set brainageR_dir=/local/path_to/brainageR/software
setenv PATH $PATH\:/local/path_to/brainageR/software
set spm_path=/local/path_to/spm12
setenv MATLABPATH ${spm_path}
... |
b1117f5d54c23ec82e507810c41b725ec37e4288faa3e4159cd2879556c0c511 | Shell | 386 | 8 | #!/bin/sh
/usr/local/ensembl/bin/perl human2chimp.pl \
-hdbname homo_sapiens_core_26_35 -hchromosome 1 -hhost ecs2 -huser ensro -hport 3364 \
-cdbname pan_troglodytes_core_26_1 -chost ecs2 -cport 3364 -cuser ensro \
-hassembly NCBI35 -cassembly CHIMP1 -logfile chimp.test.log \
-store -duser ensadmin -dpass ense... |
eded4044a693712482fa61ce5088608703e70a241f09fdcb496ab2876a554c5f | Shell | 386 | 20 | #!/bin/sh
# call: compile-xib.sh [xib file] [language] [(optional output nib file)]
DIR=`dirname "$2"`
XIB=`basename -s .xib "$2"`
STRINGS_FILE="$DIR/$3.lproj/$XIB.xib.strings"
TRANSLATE=""
if [ -f $STRINGS_FILE ]
then
TRANSLATE="--strings-file $STRINGS_FILE"
fi
OUTPUT="$3.$XIB.nib"
if [ "x$4" != "x" ]
then
OUTPU... |
a5daae73c63f3e006f9bcca4f59212dc9fb8e85079ddf522ebf6f137acded63c | Shell | 406 | 16 | ## Original by HT
function FastaToTbl()
{
awk '{
if (substr($1,1,1)==">")
if (NR>1)
printf "\n%s ", substr($1,2,length($1)-1)
else
printf "%s ", substr($1,2,length($1)-1)
... |
dc328f36e0a11d242c8311d676e862e8123f4a738611bcafa2d5882cf97a91ce | Shell | 413 | 23 | #!/bin/sh
prefix=/home/animesh/export/nest2.1.9349pre/neuron/nrn
exec_prefix=/home/animesh/export/nest2.1.9349pre/neuron/nrn/x86_64
NRNBIN=${exec_prefix}/bin
ARCH=x86_64
NEURONHOME=/home/animesh/export/nest2.1.9349pre/neuron/nrn/share/nrn
cd $1
if [ -x ${ARCH}/special ] ; then
program="./${ARCH}/special"
else
prog... |
a175f70d41b55104156fe8767407ea38a097e19cc54f3833f0174d19087c6a51 | Shell | 414 | 18 | #!/bin/sh
N=`pwd`
PATH=$N/bin:$PATH
MPD_CONF_FILE=$N/mpd.conf
export N
export PATH
export MPD_CONF_FILE
#to avoid bash warning, create /tmp if it does not exist
if test ! -e /tmp ; then
a=`cygpath --mixed /tmp`
mkdir -p $a
if test -d /tmp ; then
echo "Notice: created $a to avoid bash shell warning in future."
els... |
b7b03680704781a7c2d403297b625ce606b83223d8ef89db38892211896b2537 | Shell | 425 | 12 | #!/usr/bin/env bash
set -euo pipefail
BIN_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
APP_ROOT="$(cd "$BIN_DIR/../lib/smiles2docking" && pwd)"
INTERNAL_DIR="$APP_ROOT/_internal"
OPENBABEL_DIR="$INTERNAL_DIR/openbabel"
export PATH="$OPENBABEL_DIR/bin:$OPENBABEL_DIR:${PATH:-}"
export LD_LIBRARY_PATH="$OPENBABEL... |
62e764e3945dacd870bc040adb4591eee88d63265de1c523cfa015cb72032aac | Shell | 433 | 19 | #!/usr/bin/env bash
SCRIPT=run_network_simulations.py
cpus1="41-48"
counter=1
while [ $counter -le 10 ]
do
numactl --physcpubind=$cpus1 \
--localalloc \
python $SCRIPT \
-t "deg_vs_del" \
-m "minimal_triplet_synapse" \
-s $counter \
... |
c5a09ee4137c31fcf596cb181613f1aab237b52287dd6ab994b805b70c5427a7 | Shell | 433 | 19 | #!/usr/bin/env bash
SCRIPT=run_network_simulations.py
cpus1="21-28"
counter=1
while [ $counter -le 10 ]
do
numactl --physcpubind=$cpus1 \
--localalloc \
python $SCRIPT \
-t "deg_vs_del" \
-m "minimal_SLSTDP_synapse" \
-s $counter \
... |
06bf4b82513f8b08d45af264e41e642507cec64eb16429919c8e0e880782253b | Shell | 435 | 12 | #!/bin/sh
# Generate arm-tune.md, a file containing the tune attribute from the list of
# CPUs in arm-cores.def
echo ";; -*- buffer-read-only: t -*-"
echo ";; Generated automatically by gentune.sh from arm-cores.def"
allcores=`awk -F'[(, ]+' '/^ARM_CORE/ { cores = cores$3"," } END { print cores } ' $1`
ec... |
221c9913fa44d4b6bc995c9f9a479b68e4faf6d0fa5a282b5349009b3e5773e3 | Shell | 446 | 21 | #!/bin/bash -e
echo "Building and installing neuromaps"
python -m build
if [ "$INSTALL_TYPE" == "setup" ]; then
python -m pip install .
elif [ "$INSTALL_TYPE" == "sdist" ]; then
python -m pip install dist/*.tar.gz
elif [ "$INSTALL_TYPE" == "wheel" ]; then
python -m pip install dist/*.whl
else
false
fi
pytho... |
3b9157cdfeada0072bfb2351b8389605322b9d1d8bd69b40b16884ef0917bd1f | Shell | 455 | 22 | #!/usr/bin/env bash
set -euo pipefail
# Directory containing per-sample VCFs
# Adjust if needed
VCF_DIR="genotype_sample_files"
cd "${VCF_DIR}"
for i in $(seq 1747192 1747211); do
VCF="SRR${i}.biallelic.snps.vcf.gz"
if [[ ! -f "${VCF}" ]]; then
echo "[WARN] Missing ${VCF}, skipping"
continue
fi
ech... |
45832267ad47e291c8143b8e6fca4817134b859f047865997acec7639046887c | Shell | 458 | 8 | for i in *.[Mm][Pp]3; do mv "$i" `echo $i | tr '[A-Z]' '[a-z]'`; done
for i in *.[Ww][Mm][Aa]; do mv "$i" `echo $i | tr '[A-Z]' '[a-z]'`; done
for i in *.mp3; do mv "$i" `echo $i | tr ' ' '_'`; done
for i in *.wma; do mv "$i" `echo $i | tr ' ' '_'`; done
for i in *.mp3; do mplayer $i -ao pcm:file=`basename $i .mp3`... |
f335aa1b2dabc46e7ef4d7bbf2c398139acab9d5ed65fb61f91afbc50f22acfd | Shell | 465 | 16 | #!/bin/bash
DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
DIR=$DIR/..
# locate raw and processed data directories
while IFS='' read -r line || [[ -n "$line" ]]; do # loop over lines
for i in $(echo $line | sed "s/,/ /g"); do # loop over comma separation
eval $i
done
done < "$DIR/configs/.dataPat... |
e7a1bae2b04660b9a8fe3b463d1165bd3efaf4e24a16b207bb80b25b070fa4a7 | Shell | 470 | 18 | #!/bin/bash
#intiate conda star environment
conda activate rnaseq_env
##Tip (prevents the old pthread issue): set a larger stack size in this shell before running STAR:
ulimit -s 65532
##RUN STAR
##Create the hg19/ch37 genome index files
STAR --runThreadN 30 \
--runMode genomeGenerate \
--genomeDir GrCh37_ST... |
06f43e1999e007e43a5187f62006914eb54928c9230c6e45b674b8d69054c427 | Shell | 484 | 17 |
mkdir dataset
# JND Dataset
wget https://perceptual-similarity.s3.us-west-2.amazonaws.com/dataset/jnd.tar.gz -O ./dataset/jnd.tar.gz
mkdir dataset/jnd
tar -xf ./dataset/jnd.tar.gz -C ./dataset
rm ./dataset/jnd.tar.gz
# 2AFC Val set
mkdir dataset/2afc/
wget https://perceptual-similarity.s3.us-west-2.amazonaws.com/da... |
12a665c1d4f35b355c6bf0ef94d61306aef43ff400fd5d1ed4c9cd26f3e2289a | Shell | 492 | 13 | #!/bin/bash
for rois in `seq 1 3`;do
for pc in "true" "false";do
for negt in "true" "false";do
echo '"sorting_algorithm='"'"'default'"'"';","value_binning={'"'"'percentiles'"'"'};","cap_tvals_at_zero=true;","freqs={'"'"'alpha'"'"','"'"'gamma'"'"'};","parcor='$pc';","negT='$negt';","ROIs='$rois';"' > /project/3018037.0... |
0d7eebc34e33e6fb175e16f5dad2de29c52869a3759013b27674c0b59ba1d18c | Shell | 493 | 15 | #! /bin/sh
/bin/rm -f animpoly.log
for i in `ls animpoly.*| grep 'animpoly.[0-9]'`;do
echo $i
echo '=============='
awk < $i '{print} /^%%Page: /{print "142 123 translate\n"}' > $i.ps
gs -sDEVICE=ppmraw -sPAPERSIZE=a4 -dNOPAUSE -r36 -sOutputFile=$i.ppm -q -- $i.ps
/bin/rm -f $i.ps
ppmquant 32 $i.ppm | pnmcut 0 114 14... |
6f475ba9e028a02d30e000a71ffb33ff39d3ab39248e8f58ff3c39b333987017 | Shell | 499 | 31 | #!/bin/sh
rm -f t.sed
touch t.sed
for f in seq*name
do b=`basename $f name`
#n=$(cat $f | pip-quote-ps-string)
n=` cat $f | tr -d '\r\n' | tr -c 'a-zA-Z0-9 ' '_' `
test -n "${n}" && echo "s/${b}data/${n}/" >>t.sed
done
sed -f t.sed
#!/bin/sh
for x in *; do
y=`echo $x | tr '[A-Z]' '[a-z]'`
if [ $x != $y ]; ... |
2dd1a320145249ab8b906b3ad44ba67f075da653e1765ad0a467818b82fbfe90 | Shell | 503 | 22 | #!/bin/bash -e
echo "Running tests"
echo CHECK_TYPE = $CHECK_TYPE
if [ "$CHECK_TYPE" == "style" ]; then
flake8 neuromaps examples
elif [ "$CHECK_TYPE" == "doc" ]; then
cd docs
make html && make doctest
elif [ "$CHECK_TYPE" == "test" ]; then
mkdir for_testing
cd for_testing
cp ../setup.cfg .
... |
28d128431e5636a4a0012bee7ac7c2a4763127fae95f44e4a9941fa3560d6dd2 | Shell | 505 | 12 | #dos2unix scratch.slurm slurmDIANN.sh
#bash slurmDIANN.sh /cluster/projects/nn9036k/scrbkup/nDIA/Fig2A-E_raw/DDA
DATADIR=$1
SEARCHTEXT=TestFile.d
CURRENTEPOCTIME=`date +%s`
WRITEFILE=$CURRENTEPOCTIME.report
echo $WRITEFILE
for i in $DATADIR/*.raw ; do echo $i ; sed "s|$SEARCHTEXT|$i|g" scratch.slurm > $i.$WRITEFILE.t... |
ca3b133b5770d85205fb445b47bd9abc3c9803ff65f32fa0ae60cb4f04bd41a6 | Shell | 505 | 13 | #!/bin/bash
## brainageR script for generating multiple submission scripts for sending jobs to a queue manager (e.g., SGE, SLURM)
## James Cole, King's College London james.cole@kcl.ac.uk
## software version 1.0 09 Aug 2018
file_list=$1
template=$2
if [ "$#" -ne 2 ]; then
echo "You must specify two arguments, e.g.... |
119dea7f3ab2863d94a1c8089e2fa3afb94d6f345f14941843a2269989a9fd12 | Shell | 506 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.err
# Generat... |
3a9867b55770ba6657bebf0f6d46b2b7c1031b6cda66c737fd236c234957c3b8 | Shell | 506 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.err
# Generat... |
6fe434723243a9a347e3c38ade4f018b8ebb46df9daf7b8cceced073c41c56b1 | Shell | 506 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.err
# Generat... |
874b51c34d512ab1bf395b50448f1c23fcd692133078f0ea58470bca99b174d2 | Shell | 506 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.err
# Generat... |
034bf08498086de50652d500595f8bfc3485a4d45ae7cb8be232120ad291c9b9 | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
0982b0b581bb3174dc01d4af37735fcc9944a61d3cf4691a54d0676aff1923b0 | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
224be1a6c4ef424552d7faaca16c7b1a800d915d66c40cccfafd9d02a66f34c5 | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
22a9bfa205f4252a64a8544a07e722edbe64098b187a6e0c759f403b1aec051b | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
4bb330551e43b0f41f96886e8e43619f82bdce7ab1b3a757c74a83b7f86fdf33 | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
590cc76880bf9ccf60f5fc224cfe9cd3a109ca5424e14838b337232189eda94f | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
79d761229f46de66706066b7a6907b1fa7693232770a23dc7f966b06f773a516 | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
811aad1aa63dc54d08c3a8a3029b2b1b404b003af5555d9319da3ac63f849bcc | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
8f3db4c9cae4ef5a6a286eacf7c28ebf826075d6398e2fec9c1ccb885e496dc6 | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
986d590121e29a11abe697b5de1da70501dc2e64b75571a6f375b6d9458926ce | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
a16f753270b068d5eb73baaeadb1c23bf42114ee0d24f9c718d7c00c03e94cd6 | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
a78cf6cf1d32762a02b70e426f982759c4fe5937665f067b7c4b15e9aacb0229 | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
d56c48f6d19f2b3445582ba382103ba18d9dc6aee92be991e981bd6a253fed7a | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
e78390d35b5c4b88f9a96dd1e3d08fc6d00d76aae5b86e356d949c85b7f61545 | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
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