sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
ecfd0f1524dc9f3d0a06de7297791be61ee067bb00b33503d32dd0b3a31038c9 | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
f1614be1648693fa4f759a3ceaddb227143b03dbaaeeb698bc0c7e349862a584 | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
f26180bc23dcc6d6254be198234bb9f2b00811cff1ccfdc263b1bb4bcc47b745 | Shell | 510 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.err
# Gene... |
01244ab150616956731c4b8ca1be28a999df1a78d992fc67a111fc725ff2b0d2 | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP227_PD_NP17-232_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP227_PD_NP17-232_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP227_PD_NP17-232_PFC_bulkAligned.sortedByCoord.out.bam.err
# G... |
0ec1a65e9238f4fdb3d73b98281c585be50c61aa4708f09e05b24e47b858cb54 | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP196_PD_NP16-285_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP196_PD_NP16-285_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP196_PD_NP16-285_AMY_bulkAligned.sortedByCoord.out.bam.err
# G... |
0f6dfc326a1c55945f0439ffd9fd6ac83216c71f4e2ac437d5ff8b76bb2c2a6c | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam.err
# G... |
10d2ceabd866c5dc621974ede596d9b252012096e2dc5a5935d685db2aa04c62 | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP159_ctrl_16-119_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP159_ctrl_16-119_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP159_ctrl_16-119_PFC_bulkAligned.sortedByCoord.out.bam.err
# G... |
116c1a9808289f10f2f6fd444690cd4f6740640fe8b62a581586f21f9186db7c | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam.err
# G... |
12c10237d33580aba4e78c5dcbd4ee1f35f09ec4efe896aac182b779a01179c1 | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP202_PD_NP19-137_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP202_PD_NP19-137_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP202_PD_NP19-137_AMY_bulkAligned.sortedByCoord.out.bam.err
# G... |
37b6a408263ae76bdcad302381a4d6cfd5396c56935a25e0316d379531686804 | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP158_PD_NP21-217_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP158_PD_NP21-217_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP158_PD_NP21-217_PFC_bulkAligned.sortedByCoord.out.bam.err
# G... |
495e2aa310d6e1ecad0e6e6c4def992134b4d14d8406e17b504b8e73fbb94705 | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam.err
# G... |
5ddbd3d419450fbe55882b289b6501ba24361a493526934a0a5bcffe31d9890b | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP220_PD_NP19-137_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP220_PD_NP19-137_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP220_PD_NP19-137_PUT_bulkAligned.sortedByCoord.out.bam.err
# G... |
643bb2fa725b74c82711b55e148bbcd899dc670509778a8542c6ecc5397a4b1f | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam.err
# G... |
6dbdf9acc3f56fe353f2afdcddd9be0b1a8aef238b423de7e28377cf10c3352f | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam.err
# G... |
99d7a505ec97e7b86b50289a5452003f0ae3153ac9baada8c6eeac54e4ae01ea | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam.err
# G... |
b545ba5bde500f1897c9e7cf3b150ba85e61848b3b36e1ce9b8e8526b98be5ff | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP226_PD_NP16-285_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP226_PD_NP16-285_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP226_PD_NP16-285_PFC_bulkAligned.sortedByCoord.out.bam.err
# G... |
bb6501d3a429d571a6b0433b39a246d582354f1b4ed6f0df20037f0e7200766d | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam.err
# G... |
f4b5c0669b807b55be3b0b64cd07b10b93d0874190a2e1e0a9a21178607679fe | Shell | 514 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam.err
# G... |
0b0e519a3dff3454d888d59a3f190fe0ebc23d17d6ebdda85762cd3ea26af3f9 | Shell | 516 | 4 | #!/bin/bash
ls /projects/NS9036K/NORSTORE_OSL_DISK/NS9036K/promec/promec/TIMSTOF/LARS/2024/240222_DIA/DIA_library/*.d
grep 240222_Maike_DIAlib_waste_Slot2-2_1_6569.d $HOME/disc/NS9036K/promec/*.log
for i in /projects/NS9036K/NORSTORE_OSL_DISK/NS9036K/promec/promec/TIMSTOF/LARS/2024/240222_DIA/DIA_library/*.d ; do echo ... |
6cc694cc7a7145713a4dfb4e96458598c93ae1dba7dd7a54c1cb20dd11e686a2 | Shell | 517 | 15 | # if specified in the config, the FreeSurfer environment is set up.
if [[ $setupFreesurfer -eq 1 ]]; then
export FREESURFER_HOME=$freesurferHome
source $FREESURFER_HOME/SetUpFreeSurfer.sh
fi
# SUBJECTS_DIR is the folder were all files of a particular subject are stored. Hence the subject itself is called 0_freesurfe... |
569a1eb5c139edfdb81b23eba7bf70eba5598f9274072f9024425fdcd087c46c | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP170_ctrl_NP17-20_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP170_ctrl_NP17-20_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP170_ctrl_NP17-20_PUT_bulkAligned.sortedByCoord.out.bam.err
... |
67799d84d01fe26fd6d5f41642c3ee092feb95f8a3d479448b2cf7c993fd61d8 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP200_ctrl_NP22-37_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP200_ctrl_NP22-37_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP200_ctrl_NP22-37_AMY_bulkAligned.sortedByCoord.out.bam.err
... |
91192b1de88bc004aff2a38d852f4f9366e9dfc7f793032a4b2b47c008faa115 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP201_ctrl_NP22-75_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP201_ctrl_NP22-75_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP201_ctrl_NP22-75_AMY_bulkAligned.sortedByCoord.out.bam.err
... |
943d30c13d995f96524933e543cebda374510f6521a296209640f08653608d8c | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP230_ctrl_NP21-04_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP230_ctrl_NP21-04_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP230_ctrl_NP21-04_PFC_bulkAligned.sortedByCoord.out.bam.err
... |
9be1d4325eb886bf3df86bcb2bc92dfbc3c2ce7f72b6aa137ec626de969cb2b5 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP223_ctrl_NP22-37_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP223_ctrl_NP22-37_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP223_ctrl_NP22-37_PFC_bulkAligned.sortedByCoord.out.bam.err
... |
a26529df9a93ab1734b34cdb53f2454e39826570f9ea37b874ec9478df8a7b37 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP180_ctrl_NP16-119_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP180_ctrl_NP16-119_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP180_ctrl_NP16-119_SN_bulkAligned.sortedByCoord.out.bam.err
... |
a889be343ae70cd3a01fb76ca155af0cd89b5d7a65de081e1ebb8b104528a821 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP203_ctrl_NP19-218_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP203_ctrl_NP19-218_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP203_ctrl_NP19-218_SN_bulkAligned.sortedByCoord.out.bam.err
... |
adc3da828c34f1c26fdc93388d4143e9b9721904db859d106f5f5579f34a8284 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP219_ctrl_NP22-75_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP219_ctrl_NP22-75_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP219_ctrl_NP22-75_PUT_bulkAligned.sortedByCoord.out.bam.err
... |
b78813fe21754d026a17219e57317d386864be3f6d8e4e3665bd28cea852342c | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP167_ctrl_NP17-20_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP167_ctrl_NP17-20_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP167_ctrl_NP17-20_PFC_bulkAligned.sortedByCoord.out.bam.err
... |
d738bc684cf507323da34b068369d05bdddceccf48533d552ddffe7d6c9e4719 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP184_ctrl_NP18-148_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP184_ctrl_NP18-148_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP184_ctrl_NP18-148_SN_bulkAligned.sortedByCoord.out.bam.err
... |
df40e88b861c613b624be25227875e6fa38425fbfa9d272ccaf3023266c41051 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP181_ctrl_NP16-293_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP181_ctrl_NP16-293_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP181_ctrl_NP16-293_SN_bulkAligned.sortedByCoord.out.bam.err
... |
e5c00075112703cc528f85bc9d3fb4e0eee76f44b11167ca2f88ab09ec57f73a | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP224_ctrl_NP22-75_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP224_ctrl_NP22-75_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP224_ctrl_NP22-75_PFC_bulkAligned.sortedByCoord.out.bam.err
... |
e60cdacd3da34b59f3fa4b780000892e689268ba4315080253bead37335809f8 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP231_ctrl_NP23-21_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP231_ctrl_NP23-21_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP231_ctrl_NP23-21_PFC_bulkAligned.sortedByCoord.out.bam.err
... |
e8914bbf234f120ae25a701b40ad51eeae844e2986f42ba18cb7a73d99422005 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP172_ctrl_NP18-46_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP172_ctrl_NP18-46_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP172_ctrl_NP18-46_PUT_bulkAligned.sortedByCoord.out.bam.err
... |
ea389af2758895eb7263c48c706f36960a7794a7b5c84358c8505fa1c46de057 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP218_ctrl_NP22-37_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP218_ctrl_NP22-37_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP218_ctrl_NP22-37_PUT_bulkAligned.sortedByCoord.out.bam.err
... |
f1da5504cc09875773cea7cea3b530afb61c6ffd93c187007aa32f4b59361d43 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP175_ctrl_NP16-284_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP175_ctrl_NP16-284_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP175_ctrl_NP16-284_SN_bulkAligned.sortedByCoord.out.bam.err
... |
f57672470affb8b153f1822b1a7f2591d5dc5dd212cdb9b5b72f1d75e2d7fab8 | Shell | 518 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP161_ctrl_NP18-46_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP161_ctrl_NP18-46_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP161_ctrl_NP18-46_PFC_bulkAligned.sortedByCoord.out.bam.err
... |
14d8ab81d105e3bfb92683cb9e857a294dc2b2fa17c414677b3193160fc87910 | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP229_ctrl_NP19-137_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP229_ctrl_NP19-137_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP229_ctrl_NP19-137_PFC_bulkAligned.sortedByCoord.out.bam.e... |
2c45a4f4f2eaeee281312d7769445985b61b043acb47c81838f49c23bcd73d35 | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP189_ctrl_NP18-148_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP189_ctrl_NP18-148_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP189_ctrl_NP18-148_AMY_bulkAligned.sortedByCoord.out.bam.e... |
3057c3bbc11f282dc460e4b19cab4e85685e489a187a66f0a73b9de9ca49fd9f | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP188_ctrl_NP16-293_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP188_ctrl_NP16-293_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP188_ctrl_NP16-293_AMY_bulkAligned.sortedByCoord.out.bam.e... |
34352003a069fa261150201d5185074b3b101b4eb72be9967d7a54cff687ca75 | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP166_ctrl_NP16-293_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP166_ctrl_NP16-293_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP166_ctrl_NP16-293_PFC_bulkAligned.sortedByCoord.out.bam.e... |
5f12063619439187ab45453f616c1b5785c0fc754de1c478f39ba941eb04ef97 | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP160_ctrl_NP17-216_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP160_ctrl_NP17-216_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP160_ctrl_NP17-216_PFC_bulkAligned.sortedByCoord.out.bam.e... |
6c452eabf0344462c7a583499a7873d85f5350cfeeabf0a86525820cd64c7842 | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP186_ctrl_NP16-119_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP186_ctrl_NP16-119_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP186_ctrl_NP16-119_AMY_bulkAligned.sortedByCoord.out.bam.e... |
909477e96c849b493975c9d509f5f8ad69c693a7a1e66ff93a41ed2f8dce4ddb | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP199_ctrl_NP19-218_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP199_ctrl_NP19-218_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP199_ctrl_NP19-218_AMY_bulkAligned.sortedByCoord.out.bam.e... |
9f065d41fb8f78df7b0fe62f29a974d7ec3f48612b6d3548a3325c9c7ec0d423 | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP221_ctrl_NP19-218_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP221_ctrl_NP19-218_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP221_ctrl_NP19-218_PFC_bulkAligned.sortedByCoord.out.bam.e... |
ae3a1d35e0e45b693ffbc0a29c006e5b4d19fd1a826be234b70454d5faeeacfe | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP217_ctrl_NP19-218_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP217_ctrl_NP19-218_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP217_ctrl_NP19-218_PUT_bulkAligned.sortedByCoord.out.bam.e... |
ae56c7c954529d43a4f5c2f00a2402d9fa033c4a9d818a1be75136b030d529ca | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP162_ctrl_NP18-148_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP162_ctrl_NP18-148_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP162_ctrl_NP18-148_PFC_bulkAligned.sortedByCoord.out.bam.e... |
b9d11def7b021b50961d6abc9f42115c13b43616e693c06d0f34e9e7dc02a732 | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP165_ctrl_NP16-284_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP165_ctrl_NP16-284_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP165_ctrl_NP16-284_PFC_bulkAligned.sortedByCoord.out.bam.e... |
c6a425846af1cb4266b65e66c120a3bd1a4308ea396b45f3518c1c86f930cf7a | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP176_ctrl_NP18-148_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP176_ctrl_NP18-148_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP176_ctrl_NP18-148_PUT_bulkAligned.sortedByCoord.out.bam.e... |
cb3f043c09008c6e37f2d793113ab88fda31ac4ec50db3f3c973df612a9ee5d7 | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP174_ctrl_NP16-119_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP174_ctrl_NP16-119_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP174_ctrl_NP16-119_PUT_bulkAligned.sortedByCoord.out.bam.e... |
da990d68d1340c6ac12ead7d188ed9b790c6f6a7e9d4234d879f7c413b2d95f3 | Shell | 522 | 14 | #!/bin/bash
#SBATCH -n 10
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 10:00:00
#SBATCH -J index_ASAP168_ctrl_NP16-284_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o index_ASAP168_ctrl_NP16-284_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e index_ASAP168_ctrl_NP16-284_PUT_bulkAligned.sortedByCoord.out.bam.e... |
eaf73daad7224e151bac4dc4e786c00c09ad85d41f4622202e95342feef13bd0 | Shell | 523 | 12 | #https://figeno.readthedocs.io/en/latest/content/usage.html
#wget "https://download-installer.cdn.mozilla.net/pub/firefox/releases/139.0.4/linux-x86_64/en-US/firefox-139.0.4.tar.xz"
#xz -d firefox-139.0.4.tar.xz
#tar xvf firefox-139.0.4.tar
#./firefox/firefox
#pip intall figeno
#create config.figeno.json
#/cluster/hom... |
14d168c8e63e587d9087d53b5b87aa66c9e08b2e0779cc6f96d23eb9c83e1a95 | Shell | 557 | 21 | #!/bin/bash
#SBATCH -n 10
#SBATCH --ntasks-per-node=20
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 19:00:00
#SBATCH -J FCcount
#SBATCH -o %j.FCcount.out
#SBATCH -e %j.FCcount.err
module purge
ml subread
gtffile='/home/yogitas/fs3_files/AnnotationFiles/GRCh38/gencode.v38.annotation.gtf'
path='/scale/gr01/home/yogi... |
c4d12c3a41379607dc52ae7ea6feab9f0c48c9f5ce013909d5fa23b34b475c65 | Shell | 558 | 22 | cd 'D:\animesh\booksNpapers\lang\gnuplot';\
splot 'feat.txt' index 0 title "EWS";\
replot 'feat.txt' index 1 title "BL";\
replot 'feat.txt' index 2 title "NB";\
replot 'feat.txt' index 3 title "RMS";\
set term png small;\
set out "featall.png";\
replot;\
set out;\
set terminal windows;\
replot;\
save 'D:\ani... |
612c0c784234b38b07425fb07e97bfa7740b905ccd03146bc68080fea9719110 | Shell | 575 | 24 | #!/usr/bin/env bash
set -e
GENOME_DIR="GrCh37_STAR"
OUT_DIR="../STAR-output-last-try"
THREADS=30
mkdir -p "${OUT_DIR}"
# Loop SRR1747192 .. SRR1747211
for i in $(seq 1747192 1747211); do
SAMPLE="SRR${i}"
R1="trimmed-reads/${SAMPLE}_1_trimmed.fastq"
R2="trimmed-reads/${SAMPLE}_2_trimmed.fastq"
STAR --runMode... |
6a0cb0e5a15e2ae15669835298f4ade54862e81c44664b46c1710ef93da0e960 | Shell | 575 | 21 | #!/bin/bash
DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
DIR=$DIR/..
# locate raw and processed data directories
while IFS='' read -r line || [[ -n "$line" ]]; do # loop over lines
for i in $(echo $line | sed "s/,/ /g"); do # loop over comma separation
eval $i
done
done < "$DIR/configs/.dataPat... |
37742af070df1bfce5af39c7569b3e8d3f3355e730f3e0895a96a4a631d46c4b | Shell | 578 | 16 | # performs surface reconstruction using FreeSurfer
# if specified in the config, the FreeSurfer environment is set up.
if [[ $setupFreesurfer -eq 1 ]]; then
export FREESURFER_HOME=$freesurferHome
source $FREESURFER_HOME/SetUpFreeSurfer.sh
fi
# SUBJECTS_DIR is the folder were all files of a particular subject are st... |
c1b62935b4b56083501eed75abcd571442b29fa0238461d5aeab8a5a00ba1c01 | Shell | 579 | 16 | #!/bin/bash -e
# Copyright (c) Facebook, Inc. and its affiliates.
# Test that import works without building detectron2.
# Check that _C is not importable
python -c "from detectron2 import _C" > /dev/null 2>&1 && {
echo "This test should be run without building detectron2."
exit 1
}
# Check that other modules are... |
2a532609e1764c52e7aa6605641b8d5ae6ce551e05fd6a1b39d2df1ffeb58ec5 | Shell | 584 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bigwi... |
34eb0a80571b1ef3e335051fc1c6db780245a21a86faed4c70e192a4bcc33f1a | Shell | 584 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bigwi... |
8a9563207d365785c4c35883a04768c4b3a2ecf0fa65d444e064557db10e115c | Shell | 584 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bigwi... |
e7d5dd045a39cea21083b3c66809551d35a4360893d1404b7fc7767b63327edd | Shell | 584 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bigwi... |
08787309efb5c6a29fb846a75a8d0b303281c146817b1b751e19d9bd49fd8c1c | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
0d0e5b0edf0237e3e3b13e313614142fc1f4e0a32fd0cca2b8ecde0f74bd9161 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
13f61bbdaf380bd9da364b1b1bf11e534b7c34409f0d402b29d961638172380b | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
1c529719ed8fb7feab0bac4af69e6c482527bbda3fe28941f669eaaf58550167 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
1d962384248e0f841fca80a4caaafd89a6186bc747aad9d9b512a086447949a7 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
73d168fac05ac388406e3c71b07f488612453f80021fadda568b69a1ab9c6fd6 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
77c8aa49cda44b7ef6247b5cf90b798e415b40a4fbad9e7d77c3fdc767b05d43 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
83cb0b8362358011789018f7fe240630123426101a576deb0f70e8210fa8319f | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
97c329f2222a6bba38c03a860e66a04c4f33f89dea99f8ef9c37a772e8b36d08 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
9e7e6e3e15279087342b9a0555c35d21ed41a6e3c35b03c83de3a330ac128f81 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
a24741da40ce3dc0be7758da1361341f298bc23c4b7843612b437a8004c0dd17 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bigwi... |
a3dbd55d3a24618d0f0e4636337e8a030ce645e303959ead859f4daf01cd23a9 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
ad345bdd8e91dd1eccdaa53464157150b2f0e68110c837adafee3d7e04f95806 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
c3f4100f7c1cf3c2d7f4e3a3272abdada6abadf7119a2bda6e774722aaf1c839 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
d0f4f1daf12205dc0dacb95f7997a310b664a25da4b663537da3f64a64ea5e28 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
d4d0279e2c1f885faf07ebdaa8770c60bebad6bad2dcea39e497f2e10aaa994a | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bigwi... |
d809a45e84e2406cc2cee4c9c3e2e09755c0960849a9e843f8be300d929866c9 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
ea038825055b86ba3af3377437a6dfc378206af82ed11b781f899639f8c7a2d6 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
f7c8c0eaea5d72335d8f49b90756e9fd100cadacc01ab7848aaa6f241b165c3f | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
f836a10f5048216fa432afea18fb905cecd652cb8be2ad25b71489ce6b67c5e6 | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bigwi... |
fa2aafcd8fde3157ec870b2be5d5f5cd24bb7d70734c6103553c688443abf80d | Shell | 589 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bigwi... |
00805d534bff2c870efe632970fe879e191122993e70a3f0d7be903ab151684f | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam.err
# convert to... |
05c0389d7def7e39ab8923da1884368c3f90d661b235faad64609fbb7516298b | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam.err
# convert to... |
06b1746f2fcabc998bfedaa920be28c056835082a1642c1d2bbdf70660f0c439 | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to... |
1133be4906021739853901fbbbf7c936635e8f69cda3da62ff0755a35c3cd20c | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to... |
1b539618d947ac9d9e4eb290ea66cdbc3f3e167df9d5396ea56b8ed1b1774634 | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
2880ae85189694d26730916184e0de8a226d858af824332ce6265c145887cac9 | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
4240bbcf2f3fb7b206b6048cd0be226a6cfc7ca6412de2b34516625532bc7c6f | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
5759e63a90a0ed16996c32d22bfed9e1214c06a505c1255a79747a4db72d49e7 | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
5d2e8b6201a17548e2fbc09a7e04cc9921a491e24ff008daffee580983d5e833 | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
6be38e61908b456ea9bc4d803cb4c60aee0457bc3d90625a0689beb5c1fff90e | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to... |
757e238f179f4a78365c9f452acbab4623806fc97df703418db041e4b98db084 | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to... |
7e0233029d601b335136ca2826caf6a1f82bd8ed02e4059568a0ea77181368e4 | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
844c23ebdfad03f986b468c45618399edb41a9047ba481449ddde317b03dd942 | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to... |
8bee1d884dda5abc884fdd5a46235470c69203f3ebe64fc115ebd00c6bf9e558 | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
9add519e48c429307d33b2913413363bb4814d91f9735a7cfe899e666a703f49 | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 40
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam.err
# convert to... |
9b7894ee13f3b5a1cf5e4533e83af2de7c9ace52e360e7ff5be77a55d40d3572 | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
9fd059e7d2266f3dd1231bc9ec16992624a329a7e8609983f3e53f54e441f7a1 | Shell | 594 | 15 | #!/bin/bash
#SBATCH -n 15
#SBATCH -N 1
#SBATCH -A csens2024-3-2
#SBATCH -t 30:00:00
#SBATCH -J bw_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam
#SBATCH -o bw_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.out
#SBATCH -e bw_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.err
# convert to bi... |
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