sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
6e6fcb88b8c34ed5c5b0f29eaab93ff93fb19c7ad35a7cc414ed586f3e88e88e | C/C++ | 6,376 | 209 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
ce08fad5d34d2b6daa2edbb5b27502d3718083c4d42b49d0950214d7c766c3c7 | C/C++ | 6,431 | 143 | /**
\file gifti_xml.h
\brief GIFTI I/O library. Written by Richard Reynolds, SSCC, DIRP, NIMH.
The gifticlib code is released into the public domain. Developers are
encouraged to incorporate the library into their application, and to
contribute changes or enhancements to gifticlib.
\sa http://www.nitrc.org/project... |
2775dd424b8e20acbaf74c37624e7ba1065862f12fc3dc9b88beb2b694d3cb40 | C/C++ | 6,488 | 111 | /** \file nifti2.h
\brief Header structure for NIFTI-2 format.
*/
#ifndef __MIRTK_NIFTI2_HEADER
#define __MIRTK_NIFTI2_HEADER
/*---------------------------------------------------------------------------*/
/* Changes to the header from NIFTI-1 to NIFTI-2 are intended to allow for
larger and more accurate fiel... |
9ca0dfe978cb2b57b5d86ab00fc642827bfbdc40c570a30a201f9f47ed99eb1c | C/C++ | 6,517 | 209 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
baac02363b82a6c29a0b10e19dcc900109c1d7bf7fe430ced6f5955740b9d5c1 | C/C++ | 6,548 | 163 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
c035922d1aa2d9460e64261ba3ff15ccafb0d47a453eb0f699cdafaf5b416a75 | C/C++ | 6,551 | 161 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
e3798b4c0b8f8ab4abfea691aaa6a481095149005fbe94a6a54508b8cd84e9d3 | C/C++ | 6,578 | 190 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2016 Imperial College London
* Copyright 2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* htt... |
1eeb3c8d25a41d4e4a365c1a61d39cfddb89aebd955e4f4d7c6c60f443d4dcee | C/C++ | 6,607 | 155 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
691122314adbcef97de0f65308551f076fc09088565e6bec838c9b9959953c5a | C/C++ | 6,609 | 214 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
991cfba17a5811929b5e80b4b15f133d43f3a7a831379dbc7810dee975ab958d | C/C++ | 6,656 | 173 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
e2e2a8f37a2dc0fcad30d47e12c428bfa1d63b42f757990a7da250adaaa1fcb5 | C/C++ | 6,666 | 155 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
dfaf76e56f723b12bc88e24ae953928f869d955caf1aa1793564866dc325f2ef | C/C++ | 6,704 | 209 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2017 Imperial College London
* Copyright 2013-2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
f093d9cc827dc608ae10f192d76aeaf49f04c2a701e7acdf62512ceb274de109 | C/C++ | 6,718 | 179 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
5b260f874bf1a4b7ffd0822a30bde91f1226e8ade9a11b874bbf9ef6f7e92962 | C/C++ | 6,749 | 234 | /*
Copyright (C) 2025, Oak Ridge National Laboratory
Copyright (C) 2021, Anand Seethepalli and Larry York
Copyright (C) 2020, Courtesy of Noble Research Institute, LLC
File: MainUI.h
Authors:
Anand Seethepalli (seethepallia@ornl.gov)
Larry York (yorklm@ornl.gov)
This file is part of RhizoVision Explorer.
RhizoVisio... |
0d41bab7afa3363593b2238846edded21ea7854ddde9d96270fd60b52dad9373 | C/C++ | 6,789 | 216 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
afeec288404e39beee4e710c63467b1d177dd757f3e5a8acdc5b97c812363e20 | C/C++ | 6,890 | 147 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
871ed7f8d938faed95bc40867e69d5873a49c5e84f11138d56786b9c2f3fe183 | C/C++ | 6,928 | 274 | /*
Copyright (C) 2025, Oak Ridge National Laboratory
Copyright (C) 2021, Anand Seethepalli and Larry York
Copyright (C) 2020, Courtesy of Noble Research Institute, LLC
File: demo.h
Authors:
Anand Seethepalli (seethepallia@ornl.gov)
Larry York (yorklm@ornl.gov)
This file is part of RhizoVision Explorer.
RhizoVision ... |
3f7e136cdaae539f4331dd96caa6f486d295d7751b460b9df6fc0c05cde3aac5 | C/C++ | 7,007 | 179 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
1c51bf7fd3fb37d2979de5c4726cefc19555af28c419a702cc9f8f8654a0a15d | C/C++ | 7,037 | 157 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
6f58d8aa160eb979a1bc077c1d52dbd39fbd4167a2cd91dfc8498f6d695b93c8 | C/C++ | 7,077 | 245 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2017 Imperial College London
* Copyright 2013-2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
3f81a894326387524d71fae9e009241cac19730143699425d37804813a2d603f | C/C++ | 7,104 | 257 | #ifndef TRACEDISPLAY_H
#define TRACEDISPLAY_H
#include "newquickview.h"
#include <QtQuick/QQuickItem>
#include <QtOpenGL/QOpenGLShaderProgram> // Qt6: moved from QtGui to Qt6::OpenGL
#include <QtGui/QOpenGLFunctions>
#include <QtOpenGL/QOpenGLTexture> // Qt6: moved from QtGui to Qt6::OpenGL
#include <QtOpenGL/Q... |
9047d1ded77340a54ec3bc3b5fe127b85f1e662686ae8a0ef7deddb2c83431d5 | C/C++ | 7,105 | 223 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
b864c59bc7d1a568cece6e3a189380439fb6559f95400942827846f8b3ce2225 | C/C++ | 7,112 | 244 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
abff00601045e64573dd9c8db4e82baa610c62dd20daa4e8cdb9f3b5ac29cb34 | C/C++ | 7,113 | 216 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
4deb0086191eb45d93dc8dc8a379ff43b4e85f58bc053c3b0b4d1634458536ea | C/C++ | 7,115 | 258 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
80af0427e523f7a7d00ac7115f6c9b8c24f48f9fb55f4dd677d242804cc805c8 | C/C++ | 7,174 | 179 | /* ALGRAPH.h
Adjacency-list representation of graph, and various utility functions
To create a new graph:
G = NEW_ALGRAPH(N, d);
where N is the number of nodes
d is directed (1) or undirected (0)
Basic Functions:
NEW_ALGRAPH - create a new graph data structure
ALG_ADD_NO... |
7b3084ef11aab36b4a6ffecc202dbf03018d39276f5d5e178cd81d55bb544bc2 | C/C++ | 7,269 | 222 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
19a9bb9f702b7c59d755c51087446e671f4a3c35e2c64b9a51bb291f56a8ef2e | C/C++ | 7,270 | 197 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
de88ac2e73a729545f0a4b09bbe6ec27cd6354c9b3b4343c7474798def408e0f | C/C++ | 7,362 | 198 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
f2228659af1ccc43aaf9d6f54af7d8fba8423a8cd4de3e64250d271d5ca75fdc | C/C++ | 7,435 | 179 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
d5b379f918f2761b562ae649ea7e4e5804e40fd29e158a1b9807527ba63ea3ca | C/C++ | 7,440 | 186 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
535c00db32ff258b8711b5ebeb16856b6f814436db3cc94c179c5d0925f3e6b7 | C/C++ | 7,453 | 178 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
db545d300101d794fe4a4d559d6fa635f3f4a31091e6b0290dba3df118849a66 | C/C++ | 7,526 | 149 | /*
Copyright (c) 2009 Dave Gamble
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, dist... |
6dcd0c0c4848115067bb6ebede606563f9a9d735e7da72fac39917b7614cbccf | C/C++ | 7,593 | 223 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
89bda63c86898d1fad46d6809b3cf0b33a2d2347b5d0977ea5f42f330286b620 | C/C++ | 7,619 | 192 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
952e9ca9a95aa9477b2421b942fe49690d9969c95a3d6661e30ba642a770bfa9 | C/C++ | 7,657 | 217 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2017 Imperial College London
* Copyright 2013-2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
09ddd4a518ef3643ff0fd6f6f0392fe7773991705c8dfe98637783c995ffb5ee | C/C++ | 7,660 | 241 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
8f2134b5fbe00683b1ce6bb5df1c41f7f8518b5f1dc6576e0c5ba9b6c674ddbc | C/C++ | 7,685 | 295 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2016 Imperial College London
* Copyright 2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* htt... |
633bf708c642cf19a458a33acbebd697ee934193f89454b2e9753bf6a7237c79 | C/C++ | 7,735 | 217 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
cdce57b22da8ddf2188672c6dbf9969b367a306a1153b543e4525755a87f58e7 | C/C++ | 7,744 | 206 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
1c99dcedb71c01f21a83c24966d8c1678aa23a33d1ddfafaaaa77090e7e6a02a | C/C++ | 7,781 | 269 | #ifndef BEHAVIORTRACKER_H
#define BEHAVIORTRACKER_H
#include "newquickview.h"
#include "videodisplay.h"
#include "behaviortrackerworker.h"
#include <opencv2/opencv.hpp>
#include <QtQuick/QQuickItem>
#include <QtOpenGL/QOpenGLShaderProgram> // Qt6: moved from QtGui to Qt6::OpenGL
#include <QtGui/QOpenGLFunctions>... |
3303896947a8a712c63a152f0d72a0022413ad6f7b8f0b17a5f62ed4180083b0 | C/C++ | 7,795 | 142 | /*******************************************************************************
** FSAlgorithms.h
** Provides the function definitions for the list of algorithms implemented
** in the FSToolbox.
**
** Author: Adam Pocock
** Created - 27/06/2011
** Updated - 22/02/2014 - Changed function definitions to improve co... |
0fba7ca8be38dcb5d84f066d3d78517b249544656a64bf8b8403f74ea8eba295 | C/C++ | 7,835 | 219 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
fd61100695076f195e9189b4489f065e51efe41a912d58835ecc278ea637962d | C/C++ | 7,853 | 201 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
1c2fcfe7b80bf70ecf974873a8d35b683fdc59b422a9fec69bc73acb5c64c831 | C/C++ | 7,887 | 252 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
c4dbce15e98031467f33475f743fdbd45e80f05e493bafab312c599fe1aacdb9 | C/C++ | 7,952 | 340 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
eb170cc78685b94c8e418365d46ae2c2963ae14ef74d635a564124b5e7ce4379 | C/C++ | 7,998 | 256 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
74193a2ee589a00b3bd3e843bbfb89c384727f745923de01d3b7441a073423b8 | C/C++ | 8,054 | 250 | #ifndef MSA_H
#define MSA_H
#include <boost/multi_array.hpp>
#include "needle.h"
#include "gotoh.h"
namespace torali {
inline int32_t
lcs(std::string const& s1, std::string const& s2) {
uint32_t m = s1.size();
uint32_t n = s2.size();
int32_t prevdiag = 0;
std::vector<int32_t> onecol(n+1, 0);
... |
ff092e0c92583709cd7e96d97eb0a23dfdc70e1fffccdc4bc38455cc037ffd67 | C/C++ | 8,066 | 226 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
f2466ff234da9fe814f019d4a15ad87ae3629874e7494b932c9975ffe2dcb65b | C/C++ | 8,076 | 220 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
b0dcc2759f6b13eaa6de087b699a6c70beb0a430f285943fdcb273497c04d57b | C/C++ | 8,121 | 249 | #ifndef ALIGN_H
#define ALIGN_H
#include <boost/multi_array.hpp>
#include <iostream>
namespace torali
{
template<typename TScoreValue>
struct DnaScore {
typedef TScoreValue TValue;
TScoreValue match;
TScoreValue mismatch;
TScoreValue go;
TScoreValue ge;
TScoreValue inf;
DnaScore() ... |
cfd7e4d2869cf8fa7bb2466f49d2cee7b0ea05dfd21d070259ce24deb249d3cb | C/C++ | 8,181 | 237 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
081f48a91d8991ddf78286d4a71bd00e446fb0b0e820be25837bb7a580218734 | C/C++ | 8,222 | 206 | /*============================================================================
MetaIO
Copyright 2000-2010 Insight Software Consortium
Distributed under the OSI-approved BSD License (the "License");
see accompanying file Copyright.txt for details.
This software is distributed WITHOUT ANY WARRANTY; without ev... |
8a6dfb263f2993dae1d5ed9fd274aa028b66d3fa8f9ca1a7c34e534e702209ba | C/C++ | 8,232 | 230 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2017 Imperial College London
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses... |
b9a92e907ecf7370885ce098735ae5bc4271fe5a8013c7ca4dc46ece24c7caee | C/C++ | 8,261 | 171 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
82e83958039125f46a175299ddb68d43a8f463376cbf667ae3bf1f1c1e2c2b12 | C/C++ | 8,276 | 295 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
54a9a6215b64577f77762e820f807ef8823067e669d210bfaa498ac36f6d0eb4 | C/C++ | 8,304 | 196 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
4723acca3f33ebcd72cd9ef71dd8761e7910990724eacb2410dbeedaa5d8cf0b | C/C++ | 8,318 | 234 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2017 Imperial College London
* Copyright 2013-2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
f06ce3dbf578ec0733362d1a91d27420270c7fce152b44ac25a3abc6447b8178 | C/C++ | 8,332 | 278 | /*
* PYTHON480.h
*
* Created: 7/21/2018 7:51:30 PM
* Author: DBAharoni
*/
#ifndef PYTHON480_H_
#define PYTHON480_H_
#define DISABLE_PLL
#include "SPI_BB_PYTHON480.h"
void EnableClockMngmnt1() {
// configure clock management blocks, activate clock generation and distribution circuits
spi_BB_Write(2, 0x0000)... |
e7f409187cd7cbfef0d6e96a5e84a7e76282557ae2a09a30b1f2609573bd5ca9 | C/C++ | 8,457 | 232 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2015 Stefan Pszczolkowski Parraguez
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the Li... |
f491809180d207353914c29c6d1ca29279f79ce137d3328caf1dba55e847a4c9 | C/C++ | 8,585 | 333 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
220dbd1c4086c3dfbc9bb80a8c0df8d24f05dfbe1ff57611a832f8263c540b57 | C/C++ | 8,626 | 291 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
9c22c30ed7a78e1b2ce5c98011dbc499529332429f3de90662605b09b5b38f15 | C/C++ | 8,644 | 258 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
f4006f4c2137b711eda16364709a1da6aa3850740b21f1d658494b064ba3b13d | C/C++ | 8,765 | 186 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
8e748a9eb44d932e60d2c24c2f767340e823d98fea6d2a744c286fb309cc3f9f | C/C++ | 8,770 | 262 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
11df34d8b9de4de9c0fdf4e84683872d648cadd9ae0312f9a275b82fc8fc717c | C/C++ | 8,805 | 382 | #include <stdlib.h>
#include <stdio.h>
#include <time.h>
#include <mex.h>
#include <math.h>
#include "matrix.h"
#include "sfa.h"
/*
Files contained in this header file sfa.h:
1. Algorithms for solving the linear system A A^T z0 = Av (see the description of A from the following context)
void Thomas(double *zMax,... |
9942c11598050d211f41f698c066d89aa08527b04a4888b06d824b7e4bbf40aa | C/C++ | 8,818 | 232 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2010-2015 Imperial College London
* Copyright 2010 Wenzhe Shi
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* ... |
4493f467d646acd7518003b43b737adfacc3e510af85051411d60657bb27c43b | C/C++ | 8,847 | 233 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
f06cf9fdbb869b869f4d2b8e7c7059374f5081ff4722995dbbbba8624887c76c | C/C++ | 8,874 | 218 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
82f81eab4a1021202600e42c8f9a65eca253d71e2f55ec19dd3bd536c23d1131 | C/C++ | 8,926 | 317 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
b9939fa6fd1bfd13b5b8408da6513cfbd0eafe67f0931eae749a7a81227baf91 | C/C++ | 9,127 | 234 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
8084a7b160831ce1effe746ba07b679cdb8a925b9b6f053df77864a0f1d2d8d5 | C/C++ | 9,195 | 277 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
939abce5fdabc79780294efc31ea8f8915df46c7fe6748a18d1de6eeae75e65c | C/C++ | 9,384 | 243 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
9fe807096589071366268d4e19c6191f74afeeb534b3168d45f040b93c078a2c | C/C++ | 9,454 | 209 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
28e12f593074359b7320ffb08943fe892defdb7fbe1c289797678a49cc758d62 | C/C++ | 9,456 | 210 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
c4e1ecd0dda29e875a16e3522d77ad2bac2f0a7e76bbe98735c10e4ceba8143b | C/C++ | 9,505 | 178 | /*
* PlexonFiles.h
*
* Copyright (c) 1998-2011 Plexon, Inc, Dallas, Texas 75206
* www.plexon.com, support@plexon.com
*
* This code is provided as-is, in order to assist Plexon users who wish to
* use non-Windows platforms such as Linux. Plexon cannot provide support
* specific to any non-Windows platform,... |
a99a41d0315993cc28d47add5c62e6dc515542cc8fa6b2d452abc58db7bed29a | C/C++ | 9,558 | 245 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
cb07494de4ea2d93789614c7782c8279beae6ec6970ac0adf623ba3249c333dd | C/C++ | 9,594 | 255 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
f04b688ae620e0deeb63e5cdb0c6a127492a02b5207a2dd8a68e4f4dc0eaf94e | C/C++ | 9,678 | 272 | /*
*
* Copyright (c) 2014, Laurens van der Maaten (Delft University of Technology)
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
* 1. Redistributions of source code must retain the above ... |
f4d0ba3afe383866d7ab94a660ac44492b00f20c37459d81ef51bb5e99bf5d28 | C/C++ | 9,696 | 243 | #ifndef VIDEODEVICE_H
#define VIDEODEVICE_H
// This is the base class for all video type devices that stream data into this software
#include <QObject>
#include <QThread>
#include <QSemaphore>
#include <QTimer>
#include <QAtomicInt>
#include <QJsonObject>
#include <QQuickView>
#include <QMap>
#include <QVector>
#incl... |
41ce39b6348e234ac1cc0066e687789bcf8b82ce36112d0ca00bdd07ba4d1efd | C/C++ | 9,738 | 312 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
ff20cb4c49558710ab98b90736890c6c5133dca2f9487764d75fa3896fd55253 | C/C++ | 9,835 | 284 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
7d463f2ab82c5115ce652492dedcb68cd6fd4a1c738f217f87fc7c32da04dd61 | C/C++ | 9,998 | 305 | #ifndef POPGEN_H
#define POPGEN_H
#include <vector>
#include <cmath>
#include <boost/math/distributions/chi_squared.hpp>
namespace torali
{
// EM estimate of the bi-allelic allele frequency under HWE
template<typename TConfig, typename TGlVector, typename TValue>
inline void
_estBiallelicAF(TConfig const& c,... |
9118286e03c11bd066735dc699a39a0f331c90a12b8995b0a9caf80c1ac319e3 | C/C++ | 10,032 | 278 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
81ec018662c57a1246125c0fcf194f0674da59ac4a183350edc67b3bdd3fc42f | C/C++ | 10,053 | 266 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
069f1cc1ae501f86b65c24ddb188c5da2184b024c305d2aeaa325248d5dde0c6 | C/C++ | 10,287 | 454 | /***************************************************************************
*cr
*cr (C) Copyright 1995-2009 The Board of Trustees of the
*cr University of Illinois
*cr All Rights Reserved
*cr
***************************************************************... |
fc1b07e68d44c89b9762ab28322bc70b2c84ac42da2c3464ab177ae8e7ccfb32 | C/C++ | 10,374 | 285 | #ifndef SCAN_H
#define SCAN_H
#include <limits>
#include <boost/icl/split_interval_map.hpp>
#include <boost/unordered_map.hpp>
#include <boost/date_time/posix_time/posix_time.hpp>
#include <boost/date_time/gregorian/gregorian.hpp>
#include <htslib/sam.h>
#include "version.h"
#include "util.h"
namespace torali
{
... |
fe0a7a7d6ee8caf8864ba9dd3e8249f6714353cf7af66c404b0ec266bbb3d2ee | C/C++ | 10,383 | 283 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
0b5195aef3cefea98d2ca2a0477f739844d40d0e1cc770995b0921034a608564 | C/C++ | 10,711 | 258 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
4483a43c7ad2ee458a48b345561bdfc9d2f282df0112e3ea2f67b6b6de77203b | C/C++ | 10,781 | 362 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2016 Imperial College London
* Copyright 2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* htt... |
2663b7bd369085afce62ca96ac65fb77a0e639a798920f5c2b065d4231995a63 | C/C++ | 10,888 | 281 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
eedae6e8a948f945f364e1d40383c7a8f25d57dda64cf072064e864527d1665e | C/C++ | 11,004 | 380 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
faf76e864ff653b91b91f56a09746fa70a4c7bd2180cd17c138cc98116a64944 | C/C++ | 11,041 | 277 | #ifndef EDLIB_H
#define EDLIB_H
/**
* @file
* @author Martin Sosic
* @brief Main header file, containing all public functions and structures.
*/
// Define EDLIB_API macro to properly export symbols
#ifdef EDLIB_SHARED
# ifdef _WIN32
# ifdef EDLIB_BUILD
# define EDLIB_API __declspec(dllexport)... |
a931e77a8b55244e326ed86ec47f90242834224d730f993169fd4e6e65d5d39c | C/C++ | 11,180 | 289 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
f153957faa3ca676aab3c702a144b44e2d896e7dc9336c76bcb2e2302764d5f5 | C/C++ | 11,217 | 259 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
7cc516d68ce11871311543c80e8bd4e1f7b23721ffe48a0fe79d861ce3bccfd0 | C/C++ | 11,219 | 294 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
18686a027c5dca818ccd8f0522f9164070f93bf7c2c8d1c5ece08d282ea65c40 | C/C++ | 11,290 | 296 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
18afbe91c0d500286225c9fcbba12864ffbae574f4b9f0dc6e93b3742f01463b | C/C++ | 11,375 | 264 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
6499b823ea175304643896c247b22498f284d8be58b7238e5d1aa57e189ba1aa | C/C++ | 11,485 | 270 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
ecef086f9acc18d607e551c5b4b247dea5ac4ecfba91a8c138793e17ce6e5e0c | C/C++ | 11,496 | 276 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
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