sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
bca8b464eb2d4b8e90c5b87446d1d08e2d7fe52f633a090ba6531bafa8d1aa7c | C/C++ | 11,564 | 259 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
d180223c7f690ab0215159bf8beb553ead6cc1bfb9c7f3b427b01dbf8859e77a | C/C++ | 11,707 | 383 | /*============================================================================
MetaIO
Copyright 2000-2010 Insight Software Consortium
Distributed under the OSI-approved BSD License (the "License");
see accompanying file Copyright.txt for details.
This software is distributed WITHOUT ANY WARRANTY; without ev... |
69939d01942ed5e1d35b56f601d1735425a5c5d72ef61149aba2601a959ab494 | C/C++ | 11,713 | 301 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
e0e67b04b4b4dcf5e3fcf392c04241dd216bdaf602c1df6c1569c7b65d7fa894 | C/C++ | 11,716 | 289 | #ifndef PANGENOME_H
#define PANGENOME_H
#include <boost/unordered_map.hpp>
#include <boost/date_time/posix_time/posix_time.hpp>
#include <boost/date_time/gregorian/gregorian.hpp>
#include <boost/program_options/cmdline.hpp>
#include <boost/program_options/options_description.hpp>
#include <boost/program_options/parser... |
db0d668c1af7f406abc4fad5845b694501eb8d3b648295a77426977f7423ee7c | C/C++ | 11,952 | 371 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
01f1ab6ffc416c3030e1e8b307edb963a494b59c88731032f17a8c8e0678e0eb | C/C++ | 12,127 | 273 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
ea727616f2846ab24d2ca48ed341bc3aab1b7a86b0f4721489c060216f891e04 | C/C++ | 12,155 | 385 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
ebe5f1d8ac90eafbf9bf6c3a7149e48424392748f4968aea55037f435288b56b | C/C++ | 12,178 | 417 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2016 Imperial College London
* Copyright 2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* htt... |
ab1bd8082e56c03394b3bac3b78761e9f1bf14767d70a551f4f9b4f1f707f247 | C/C++ | 12,217 | 454 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2015 Daniel Rueckert, Julia Schnabel
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of ... |
982c5cd771540eb224a319d86c6681fb18e09d2ecf8106ad6e141193c8f9f90e | C/C++ | 12,342 | 254 | #ifndef VIDEOSTREAMBASE_H
#define VIDEOSTREAMBASE_H
#include <atomic>
#include <QLoggingCategory>
#include <QObject>
#include <QString>
#include <QVector>
#include <opencv2/core/core.hpp>
#include "miniscopeprotocol.h"
// Bench diagnostics (per-frame heartbeats, stall verdicts, pin lines) shared
// by every backend.... |
bdb0b24046967f343a7991904651855721960e4f2c798a0a6aa2be9e59b8dc31 | C/C++ | 12,413 | 292 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
91838e1372401dcf65e3f39266b2c5a77523065ae50bf82ad5c2dc7d4b167c54 | C/C++ | 12,449 | 368 | #ifndef PLOIDY_H
#define PLOIDY_H
#include <fstream>
#include <boost/algorithm/string.hpp>
#include <htslib/sam.h>
#include <htslib/vcf.h>
#include <htslib/synced_bcf_reader.h>
namespace torali
{
// 0 = unknown (diploid GTs), 1 = male, 2 = female
struct SexModel {
typedef std::vector<std::pair<int32_t, int32... |
f93ed222fc6dd7990b7c38e0f4c01cffc2fb74b01c78dd99ccbb4b959f3cd0a0 | C/C++ | 12,473 | 448 | /*============================================================================
MetaIO
Copyright 2000-2010 Insight Software Consortium
Distributed under the OSI-approved BSD License (the "License");
see accompanying file Copyright.txt for details.
This software is distributed WITHOUT ANY WARRANTY; without ev... |
33d57a148aecff9aebcd478d9ac16f55816ad33e3c9f1f5116eea522202e9b39 | C/C++ | 12,595 | 485 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2015 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
8869bcf98248041098bf6d072fe97993a04833f7d17e5749c5bfbc1bff3cd6b4 | C/C++ | 12,613 | 342 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
96d4ea1c49cafdaca545b0660913c79484dc7dfd577582d5f72f4c5f62ca9fba | C/C++ | 12,690 | 388 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
668581f284f1490d114e2b9528aa64c79527849b0654613a957e050614020b38 | C/C++ | 12,714 | 295 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
8b0e6d94f1e937f186cb7ade952c9aed15ed0e7887168ce390b2904cf8b20e7d | C/C++ | 12,720 | 330 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
61abcbea7de5259be95e40eb7cb9480fba398e62705e19e63f326b4b5e8c2f01 | C/C++ | 12,748 | 320 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
0ca49ba59ba890912a94c3ea8e275a1573d2725a492848763ce353c020f8c8c6 | C/C++ | 12,836 | 320 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
798c76da161f7e206a39b735f47a84cf49697bb7034bc9786cf7dddde3d249da | C/C++ | 12,849 | 409 | #ifndef NEEDLE_H
#define NEEDLE_H
#define BOOST_DISABLE_ASSERTS
#include <boost/dynamic_bitset.hpp>
#include <boost/multi_array.hpp>
#include <iostream>
#include <cctype>
#include "align.h"
namespace torali
{
inline int32_t
longestHomology(std::string const& s1, std::string const& s2, int32_t scoreThreshold) {
... |
3e464be2600ca2fcaea88d667af58c439511badc84755ac3bf3435c4dbf1a30d | C/C++ | 12,890 | 237 | #ifndef _GEOS_H
#define _GEOS_H
#include <Python.h>
#include <numpy/ndarraytypes.h>
#include "geom_arr.h"
/* To avoid accidental use of non reentrant GEOS API. */
#ifndef GEOS_USE_ONLY_R_API
#define GEOS_USE_ONLY_R_API
#endif
// wrap geos.h import to silence geos gcc warnings
#ifdef __GNUC__
#pragma GCC diagnostic p... |
eb406c2fc36a76fa224afd42b5f508688215e84821fbe196df31846d770cf153 | C/C++ | 12,960 | 344 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
50f1d61fd912dd28fadf71e937b6eaab887912c09c1fe27c28ad707ae0cfc56d | C/C++ | 12,982 | 416 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2016 Imperial College London
* Copyright 2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* htt... |
35a59e91487960ecc3311fce5f8eb30a2e347dd1e68a2dbabf54071fecc8e7be | C/C++ | 13,332 | 370 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
2e7937479d31a7296f49c38ec741b9470bbc688d94122be8bdfd9ebbd993e311 | C/C++ | 13,388 | 364 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
64fff7da7008dc9138dfe63a9681d4560bb355db4eb24bafacca251dfc40f369 | C/C++ | 13,448 | 305 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
dbf3aae22f39e82470726fdc9dfd6d9c8fbf52814516be3edeb99bf75dab8f36 | C/C++ | 13,464 | 346 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2017 Imperial College London
* Copyright 2013-2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
8cdbbd28d50a2e93e66b5f891e64b3b69e32cbaded437d94610f9a3ab45077ea | C/C++ | 13,487 | 310 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
e9d2fc2abb9f4b7e4f6d1e26d5739bac423c784c7514617416cbcb1926bb7eef | C/C++ | 13,625 | 498 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2015 Daniel Rueckert, Julia Schnabel
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of ... |
db9bf7739cfb096a7afe7346f180b5870ee935b1fe59769cc3a8a5f44af19f83 | C/C++ | 13,630 | 309 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
b4980a5e8fd92a9e3aaa59ed12e6c7a0a3a3f874c27845bd7b312428205ae4d0 | C/C++ | 13,725 | 396 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
5e07c7f24279d3e4b5f2d09bd71d69bf7ad68a5f719d85d508d26a87c80ead9e | C/C++ | 13,744 | 353 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
9e22669ef7cf24afabdd5e029c0ccb3c065efc16c889ab866966fec72d07dadb | C/C++ | 13,834 | 375 | #ifndef TAGS_H
#define TAGS_H
namespace torali {
#ifndef DELLY_SVT_TRANS
#define DELLY_SVT_TRANS 5
#endif
#ifndef DELLY_OUTOFBAND
#define DELLY_OUTOFBAND -99999999
#endif
#ifndef DELLY_DUPLICATE
#define DELLY_DUPLICATE std::numeric_limits<uint32_t>::max()
#endif
#ifndef DELLY_KMER
#define DEL... |
581955cd20c786c06491a93d57e0474cd1112e403bb96c99045a3e8ef1cefce8 | C/C++ | 13,867 | 404 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
c853435d9f15c4080c2bf57def8d468a3fbba3066c07966a5de9fe80001a5556 | C/C++ | 13,926 | 375 | // Copyright (c) 2010 David W. Shattuck, PhD
// $Id: dfsurface.h 154 2010-08-24 22:15:01Z shattuck $
#ifndef DFSurface_H
#define DFSurface_H
/**
\brief BrainSuite Surface Format file reader classes
\author David Shattuck
\date $Date: 2010-08-24 15:15:01 -0700 (Tue, 24 Aug 2010) $
This file contains C++ code to... |
77a01759241743bbc46ffbdfed42a05a1212f77e5479bb7c811ff58d20098f0d | C/C++ | 14,258 | 417 | /*============================================================================
MetaIO
Copyright 2000-2010 Insight Software Consortium
Distributed under the OSI-approved BSD License (the "License");
see accompanying file Copyright.txt for details.
This software is distributed WITHOUT ANY WARRANTY; without ev... |
568b038f418040aff51b53e4f4e97c2031ad893f03f9510d175de418677a5390 | C/C++ | 14,436 | 424 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
3ad53ab7d64dd595d4b4b23aff23de115c5caa50ef80ff1df5c5e7c1ba88b7de | C/C++ | 14,700 | 302 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
9cb1684022e141f22ccbc1b8279bb9690ea7a2b97f840a68cd91d57dcd28390a | C/C++ | 14,895 | 364 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
85ef4b7858c61207438b53fbf5f0cb5463710f51ad7fe8ebbce18a8e66ada641 | C/C++ | 15,089 | 525 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
efcf12199f3052e2d939e4bb24b15bdcf5296ad25227e8ff3052a67d6741b932 | C/C++ | 15,166 | 471 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
105f98bcfa928cc82f5ebe2340bed4f6bf1d466c95309b141e46e8d93fa9cbff | C/C++ | 15,230 | 347 | /**
\file gifti_io.h
\brief GIFTI I/O library. Written by Richard Reynolds, SSCC, DIRP, NIMH.
The gifticlib code is released into the public domain. Developers are
encouraged to incorporate the library into their application, and to
contribute changes or enhancements to gifticlib.
\sa http://www.nitrc.org/projects... |
4a792a82035e5bcc24490f5f48108edac45ebd17a65c7e3286e2012f3de2c8d0 | C/C++ | 15,630 | 386 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
b8872708dd8feee6c187aca99edfbda8693f34b1c6a0545617949453c3175d7c | C/C++ | 15,678 | 313 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
f0d52d5ce0d18f8d53bb44ff1554fe8e4b134fa43452261248aa3ece5b1bc990 | C/C++ | 15,681 | 578 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2017 Imperial College London
* Copyright 2008-2015 Daniel Rueckert, Julia Schnabel
* Copyright 2015-2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
6924239e5141b43fd90e544256fb612e67b29d8d4a5dc9f372a57128396311f4 | C/C++ | 16,345 | 399 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
832db6ec08cea990c671c1493d111933a1798e5d14cdb04ded0c7d98aca26c5b | C/C++ | 16,411 | 357 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
0008fbf562a8709f794be2723cbbfba1ec80ec007a8e72fb9346ab6511e68dc6 | C/C++ | 16,419 | 454 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
f781f643938137736f1c2a5b026c0aa1f99f8c2e7822f2786c9fe4e9d740c493 | C/C++ | 16,521 | 438 | /* blasp.h -- C prototypes for BLAS Ver 1.0 */
/* Jesse Bennett March 23, 2000 */
/* Functions listed in alphabetical order */
#ifdef __cplusplus
extern "C" {
#endif
#ifdef F2C_COMPAT
void cdotc_(fcomplex *dotval, int *n, fcomplex *cx, int *incx,
... |
e46e886af1fe8d649a897761e20bde8cbec9c8c87b4465a17f7a9a2d38f15f13 | C/C++ | 16,791 | 430 | #ifndef DELLY_H
#define DELLY_H
#include <iostream>
#include <iomanip>
#include <fstream>
#include <boost/container/flat_set.hpp>
#include <boost/unordered_map.hpp>
#include <boost/program_options/cmdline.hpp>
#include <boost/program_options/options_description.hpp>
#include <boost/program_options/parsers.hpp>
#incl... |
e43bfcfade1b5e6e128b3b32cbf1bd6d7f9846ae76107267acb417788718899a | C/C++ | 16,955 | 504 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2017 Imperial College London
* Copyright 2013-2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
59e8a36714ce36206ee069e2c2b6c26c7b089ed4cca52287e4575c3ad2aa221d | C/C++ | 17,039 | 432 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
c9db0e68a8f5b6be6749c656a2a4a43f4e71f2037d85e19162cde8d3904bc4aa | C/C++ | 17,080 | 391 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
9dee54de94cdce63f59a6348ad73e499031a73cb14571edfb3b76771d046f123 | C/C++ | 17,149 | 379 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
33e627c77b2db860b38d69e418066376090fab5c5da6437830f147cf17141892 | C/C++ | 17,303 | 377 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2017 Imperial College London
* Copyright 2013-2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
89fe05d17338a886d323a9c0a4a04e1003c65e004f71519f1eb97162206f7209 | C/C++ | 17,306 | 401 | #ifndef GENOTYPE_H
#define GENOTYPE_H
#include <boost/filesystem.hpp>
#include <boost/algorithm/string.hpp>
#include <boost/algorithm/string.hpp>
#include <boost/iostreams/filtering_streambuf.hpp>
#include <boost/iostreams/filtering_stream.hpp>
#include <boost/iostreams/copy.hpp>
#include <boost/iostreams/filter/gzip.... |
fbc4128bda73ab04fda6fcaeb370674310c54b1097e65ed74b8eb3095000fc54 | C/C++ | 17,409 | 477 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
da0e21fc86a04f430bfbc0cf0ca60b98eb8eac72b6e0421a12e334948c1ad4a3 | C/C++ | 17,427 | 445 | #ifndef GCBIAS_H
#define GCBIAS_H
#include <boost/unordered_map.hpp>
#include <boost/program_options/cmdline.hpp>
#include <boost/program_options/options_description.hpp>
#include <boost/program_options/parsers.hpp>
#include <boost/program_options/variables_map.hpp>
#include <boost/date_time/posix_time/posix_time.hpp>... |
c3f1deab3c67a4db361be6c319f5a4aab30bed0eb5c974461c1d0006f9cab4ff | C/C++ | 17,470 | 506 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
db5651f8b0f4e91b3a4307da3316f79589c9b5af2ae33b8b54af29dc56d3da46 | C/C++ | 17,609 | 449 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
1d96d5ea9499a2be2745ae82a5698da92e711296d4d2f9420c2a34a7b63d95eb | C/C++ | 17,976 | 450 | #ifndef TEGUA_H
#define TEGUA_H
#include <boost/unordered_map.hpp>
#include <boost/date_time/posix_time/posix_time.hpp>
#include <boost/date_time/gregorian/gregorian.hpp>
#include <boost/program_options/cmdline.hpp>
#include <boost/program_options/options_description.hpp>
#include <boost/program_options/parsers.hpp>
#... |
56154aa14951718b9b684830c491104483baeb6bd6bc2101ceae7d758502ff07 | C/C++ | 18,021 | 847 | #include <stdlib.h>
#include <stdio.h>
#include <time.h>
#include <mex.h>
#include <math.h>
#include "matrix.h"
#define delta 1e-8
#define innerIter 1000
#define outerIter 1000
/*
This is a head file for the used C files
*/
/*
-------------------------- Function eplb -----------------------------
Euclidean ... |
c8f22b290621315f8bd212517403548beeb5dae78a2a7484a4cc7c9544acada7 | C/C++ | 18,095 | 389 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2017 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
a5fb62c1308ecdd39bd106274d7570c4b16b7bc7b98f3491ffe2a59197b9d500 | C/C++ | 18,284 | 432 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
a9c5bfea5b24aab76bbaaa8a366858af0b91ccef95c67a9fad88c5c33fa88e1a | C/C++ | 19,152 | 576 | /*
* Triangle-Triangle Overlap Test Routines
* July, 2002
* Updated December 2003
* Modified by Andreas Schuh in September 2016
*
* This file contains C implementation of algor... |
118b1a5791db32ba98000dfc2aa39edabbf4b5c4122bbbd063b7000c914c3c80 | C/C++ | 19,260 | 405 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
4140c8954dd0cffb8fa355f94e67eb43aab2774cb15897db2dc3512575fbc802 | C/C++ | 19,261 | 467 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
184b5b575482d795aa47d7046fd3bb42f582dfc6413777e37f49a544ea57c659 | C/C++ | 19,649 | 420 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
a434d37f78eebafdad3b48d84b9c2ce10276793bbcd69c1376c77e27f215ffab | C/C++ | 19,817 | 837 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2016 Imperial College London
* Copyright 2008-2015 Daniel Rueckert, Julia Schnabel
* Copyright 2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
b80c837689adfebc03284a8a3a95d3bb9a4770307ce0fbe1ebf3d325615cb81c | C/C++ | 19,981 | 480 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
973835e6bbd84755f6473618ddc831ea6632e97b47d9162dead688472933875d | C/C++ | 20,165 | 508 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
213fc097e627263eeb8da5473017ec33b69b49d3ce83d78ed3f5fb008bccec5f | C/C++ | 20,186 | 470 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
26f05d26cfd960a90a1e11ffb8dbfe8ece57411f2d501f35752f68337ac62448 | C/C++ | 20,229 | 395 | #ifndef BACKEND_H
#define BACKEND_H
#include <QObject>
#include <QJsonObject>
#include <QJsonArray>
#include <QJsonValue>
#include <QThread>
#include <QString>
#include <QStringList>
#include <QMap>
#include <QUrl>
#include "miniscope.h"
#include "behaviorcam.h"
#include "controlpanel.h"
#include "datasaver.h"
#inclu... |
45a08052447361bf062104729760340c4f1c6891079f3cfaf79ff0846bef0915 | C/C++ | 20,895 | 495 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
fbf1b941f38c9fa4dd25ea5b5a0c152a9467727e1d8a90fc845d3e28195d9c16 | C/C++ | 21,932 | 819 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2015 Daniel Rueckert, Julia Schnabel
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of ... |
e52d4db5341e8663ef6934c0027b6a3384fe2ecb2c0fc5004c516852cfe6284b | C/C++ | 22,081 | 487 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
2c6e740a2817b13121625498455776d8027e34307f2dd55201b95d9c781937f2 | C/C++ | 22,168 | 563 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
31f82271227da57772cafd5df794ad3d2fc57140bd4bf0f548bbfce3f7c879d5 | C/C++ | 22,328 | 572 | #ifndef METHYL_H
#define METHYL_H
#include <boost/unordered_map.hpp>
#include <boost/date_time/posix_time/posix_time.hpp>
#include <boost/date_time/gregorian/gregorian.hpp>
#include <boost/program_options/cmdline.hpp>
#include <boost/program_options/options_description.hpp>
#include <boost/program_options/parsers.hpp>... |
a3660e078ce7c96d294791cf85cff92a5db1e37dc29a05414828801a867e686e | C/C++ | 22,379 | 694 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
2600c0d4630750d4f912ab0b3138151bf80c4afc68d2610bb6f0ccdfae9df5b6 | C/C++ | 22,384 | 483 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
482ff983adcef996e9ebfa0135bc7bc541cf20aa749813d25a703f913f0bba4d | C/C++ | 22,560 | 514 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2017 Imperial College London
* Copyright 2013-2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
ca279f775909de21449c8e5d477388ad23b654a8e7559e8a255abf867e8ff891 | C/C++ | 23,353 | 646 | #ifndef CLUSTER_H
#define CLUSTER_H
#include <boost/filesystem.hpp>
#include <boost/algorithm/string.hpp>
#include <boost/algorithm/string.hpp>
#include <boost/iostreams/filtering_streambuf.hpp>
#include <boost/iostreams/filtering_stream.hpp>
#include <boost/iostreams/copy.hpp>
#include <boost/iostreams/filter/gzip.hp... |
f5a8af4a8a5596793b6241be5467ead33273ee31f0c504c1c629c41d24b94e92 | C/C++ | 24,101 | 679 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2016 Imperial College London
* Copyright 2013-2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
a39025b64fc2c9b83aea865042e69c7fb8a883b2acbe889ba9cfccdfa9b54620 | C/C++ | 24,212 | 615 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
1a125f18d29b00d14c75e6c6fe3fc6ba574d4b31619daca5d076f3ad77690be8 | C/C++ | 25,253 | 626 | #ifndef SHORTPE_H
#define SHORTPE_H
#include <iostream>
#include <fstream>
#include <boost/graph/adjacency_list.hpp>
#include <boost/graph/graphviz.hpp>
#include <boost/graph/connected_components.hpp>
#include <boost/container/flat_set.hpp>
#include <boost/unordered_map.hpp>
#include <boost/program_options/cmdline.h... |
a7d713a23e2329cc7fd2f030a62cb9eacc59c69a954187ffff458c0fc31cd12d | C/C++ | 25,826 | 677 | #ifndef SPLIT_H
#define SPLIT_H
#include <iostream>
//#include "bindings/cpp/WFAligner.hpp"
#include "edlib.h"
#include "gotoh.h"
#include "needle.h"
namespace torali
{
struct AlignDescriptor {
int32_t cStart;
int32_t cEnd;
int32_t rStart;
int32_t rEnd;
int32_t homLeft;
int32_t homRight;
... |
45f8e600dd377a58d6b71137ce0e3feeabee13292f65cef2dbd864fe1fe968c8 | C/C++ | 25,842 | 768 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Antonios Makropoulos
* Copyright 2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* htt... |
340e2a72d90c5bd51427bf8e742b6149c4ff187dd236ae98d19a84a4c465b9d1 | C/C++ | 26,124 | 643 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
38afb96189b785c4b3d9006e9cb4962b336af0252c43383df3c87d713c21e0fb | C/C++ | 26,142 | 656 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
4855ce47714ca286f2f4db8dffb2f3c7990c54cf5392d9d0455aafdcf08a1d2a | C/C++ | 26,278 | 708 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
e7913104c95ee21c2853aec9186fa9fe7353d03b70bf9c7548942ce4180a5b1d | C/C++ | 27,740 | 919 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2015 Daniel Rueckert, Julia Schnabel
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of ... |
670449b88d01cc2a42fe7ddc6fbbc49fb7cf8e24274dd9c2bf2bae9a10065ad0 | C/C++ | 27,753 | 694 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2017 Imperial College London
* Copyright 2013-2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
53b3f43672c9d0d678842f2e17640f83802f3bde9fa43f5444e9a635c5d85818 | C/C++ | 28,155 | 793 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2013-2015 Imperial College London
* Copyright 2013-2015 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
... |
c4690eb4d7ffc6fa1d8b85e2a696b3d9a791c17ae0f022e389edbbd08383a7f0 | C/C++ | 29,426 | 743 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
796b98a4ed1efd2599fc41985fd0636fc8ffb9996c33b0969fb4a134693ca153 | C/C++ | 30,184 | 790 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2016 Imperial College London
* Copyright 2016 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* htt... |
3599e2783f51e0792377242a888ed14d49b069f4314b402ef45b45507306713f | C/C++ | 30,624 | 760 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2017 Imperial College London
* Copyright 2008-2013 Daniel Rueckert, Julia Schnabel
* Copyright 2013-2017 Andreas Schuh
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the ... |
a991ef9d3764eada6f628eadb399eeabc2355c166b99647a27b836c3197a00ed | C/C++ | 31,287 | 1,008 | /*
* Medical Image Registration ToolKit (MIRTK)
*
* Copyright 2008-2015 Imperial College London
* Copyright 2008-2015 Daniel Rueckert, Julia Schnabel
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of ... |
fb37d3652dee4c36977de674657af322946f4346bcf7cc02f15e37e751c06bbe | C/C++ | 31,321 | 1,023 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
5c33b1374d0f708f8345d5cf7395c74c3abbf75cc653010f8111fa0ea547dce3 | C/C++ | 31,566 | 785 | #ifndef COVERAGE_H
#define COVERAGE_H
#include <boost/container/flat_set.hpp>
#include <boost/dynamic_bitset.hpp>
#include <boost/iostreams/stream.hpp>
#include <boost/iostreams/stream_buffer.hpp>
#include <boost/iostreams/device/file.hpp>
#include <boost/iostreams/filtering_stream.hpp>
#include <boost/iostreams/filte... |
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