Datasets:
OpenScientificCodeRegistry
/
Database

Dataset card Data Studio Files
xet
 Community
1
sha256
stringlengths
64
64
language
stringclasses
27 values
size
int32
1
491k
lines
int32
1
21.8k
content
stringlengths
1
200k
b233514f5fa724b9c1cba78121da0d84f182f63558aa9c011ae7a358ee8d410a
Python
45
1
"""MONDO simple template evaluation cases."""
15993d866eef06c2bc1b5ea936e829bad6ebac472262a25cfd744085309ca232
Python
46
2
#!/usr/bin/env python # -*- coding: utf-8 -*-
18186c308135215b9440b9940c12a3b42051ec648b73512c4549b27ffc00ae35
Python
46
1
# keep this file for importlib.resources use.
40bd794afff2b123896273ae0f608ebaf38155c5e9e26f7fa763b9b636ae4a90
Python
46
3
import pathlib Pathlike = str | pathlib.Path
4997d66203b0ff7438ff01f1808892b06f3114d9a7c0be8368ac9029ab5d5184
Python
46
1
from .mle_modification import MLEModification
80c3397e6e1bd88188128ce0d11b9710df63e42d3af6372a76a32411c2b5d098
Python
46
1
"""API routes for the graph query service."""
bf610ce1e69936385bc9f3ebfce8c486cb0d05f2c7fb5198a55866564e608c59
Python
46
1
from .client import AlchemiscaleComputeClient
91103f5edc276bb936139931b1c828c44b832de666f2ed8cb34209ad1f018dc8
Python
47
1
# XAI Biological Plausibility Analysis Scripts
dca78d205bec5c9ff99c95d89ac9618af10fcace5ff20fcf86e777117341f08c
Python
50
1
"""Gene Agent for retrieving gene descriptions."""
401a8613308a44768a2879d33846cee3ae1205e7ba7d870651a052f44fc63d9f
Python
51
2
from .arg_type_check import method_arg_type_check
b08a865bcea5fe3ccee679bd13c90073b0e4b61e09a8715e472a10ec64ee9ce5
Python
52
3
""" Draw Agent module for creating SVG drawings. """
ed66ce246e5fb0eee59dc26ee005084512921188789bbfe52d371e208108cfa3
Python
52
3
class Global_Vars(): Feat = [] Target = []
581dac922c644a06de6b06fd5c7e819f8cf0953346c6dc36e8651256536ca9d8
Python
53
1
from .client import AlchemiscaleClient, ResultFormat
534fe89965517b570457d60817a8b039437cae300bd18f04ddf4481d60e9dd08
Python
54
3
""" Molecule and graph classes mimicking DGL's API """
c1419f59a3f1a71b69d5918040325e7a1cdc3364362ddb256ea1084dcc3ec019
Python
56
3
from cheese3d.cli import cli cli(prog_name="cheese3d")
24dcfa58fc359935671de6138ff2c5e2f35ebb4f7408ddf1abb02515b03d9c82
Python
57
1
from .jansen_rit import JansenRitModel, JansenRitParams
063f4ffa300d065b40c1cf661c0a4e7fd828a24d68bcf5ab39a7b7bb71ef7121
Python
58
1
"""Knowledge Agent for scientific knowledge extraction."""
8ad0461f8ef9ac3615dfd25fcbf73a4fc9b58e36f20738ff65f80caf18cf25fb
Python
58
1
from subjects import Subject, list_subjects, list_rewards
c42e262334d6972a3c2bb1071894b2b0c748abab6c443d0b255aded7c6c91ee2
Python
59
3
from .vg import MultiqcModule __all__ = ["MultiqcModule"]
781a0c965e3d2a901dc528681214dd32ea08536e3a8ac1ba5a907fb52de9db11
Python
60
3
from .vep import MultiqcModule __all__ = ["MultiqcModule"]
d94b22118386309c11290305ed809a3328faf7657df690c8baffc2d6b1ab2ac2
Python
60
3
from .kat import MultiqcModule __all__ = ["MultiqcModule"]
f2e3c4a43c54a39e5a341f544b41735533a7322449b14b8b557860ba92717dda
Python
60
3
from .ccs import MultiqcModule __all__ = ["MultiqcModule"]
47029115891e3abee5af59bbf8c8bc0d34fd698cefce68216fecd20f063be315
Python
61
3
from .jcvi import MultiqcModule __all__ = ["MultiqcModule"]
5236887f6e93840b9ce017fd07f7b8988d56cbe2cf1722137ed68610c6bc86d0
Python
61
3
from .rsem import MultiqcModule __all__ = ["MultiqcModule"]
64a29924d98e8e2310153763821d4dd28dfd4bc0ffdaefcc3d4866e37e81f88a
Python
61
3
from .qc3C import MultiqcModule __all__ = ["MultiqcModule"]
6a8b8d7193536066a5e32b19191562228374f091f3e45b34e3a22414258265b8
Python
61
3
from .star import MultiqcModule __all__ = ["MultiqcModule"]
8839085dcfa373092d77f0597110bb1fa3a8e44354d6044f53928226ce0dc240
Python
61
3
from .gatk import MultiqcModule __all__ = ["MultiqcModule"]
8eee0089ac0aee75d940c4072ccfef83d56d43f509efbb59cdbe5ea904e6ecb7
Python
61
3
from .ivar import MultiqcModule __all__ = ["MultiqcModule"]
9e8f6a789f3afb29b9b126a480b71d9bffd261418a4c2570f8fa7757da75edf0
Python
61
3
from .malt import MultiqcModule __all__ = ["MultiqcModule"]
aa507f9777bf7f63e6d9ff12a56fa5a15ae8efa72631c1b89cca22e122fe0b94
Python
61
3
from .lima import MultiqcModule __all__ = ["MultiqcModule"]
dbad5332b7235a028527764d39cce032f0b3a02a5aa734d7d3875e18a4175204
Python
61
3
from .odgi import MultiqcModule __all__ = ["MultiqcModule"]
eb11dcb972bc159934135eb0a52ea9dffc2ce570b37e5aae8fa4e4077070a492
Python
61
3
from .hops import MultiqcModule __all__ = ["MultiqcModule"]
03e2273c6b29df3e0c02cd69dd36602caf4cc8ae59e2936887da8f503ff77348
Python
62
3
from .kaiju import MultiqcModule __all__ = ["MultiqcModule"]
0f519f435d3539ad249915b04bc6800cdc7d9461c422801ad49eff5840aa0162
Python
62
3
from .ataqv import MultiqcModule __all__ = ["MultiqcModule"]
0f68a02a26a44412be2e0ff7c034eaf838274f1b53b62da65634e0078a874ac6
Python
62
3
from .ganon import MultiqcModule __all__ = ["MultiqcModule"]
1c94714a13aa654c75283d2169ed56578b15435520be9f2724fdb795e7489e57
Python
62
3
from .motus import MultiqcModule __all__ = ["MultiqcModule"]
27efab497f601578b71e252e960dc9b2b278053950fdebe3e74e9c2c9d2c58d6
Python
62
3
from .fgumi import MultiqcModule __all__ = ["MultiqcModule"]
3a2aeec175ad43d7b3cdb5e27e3aa3a0e5c168a851b78d8c893023d51ebf3dea
Python
62
3
from .riker import MultiqcModule __all__ = ["MultiqcModule"]
44686fab65c8a12fce0dc158f350cdf9e6b3834275a36fb489c1ee772a7a9448
Python
62
3
from .macs2 import MultiqcModule __all__ = ["MultiqcModule"]
499701c2862b5ac4051d53df0eeef9d6c91c9907d4a5d2a0bfdef8ab229c1439
Python
62
3
from .fgbio import MultiqcModule __all__ = ["MultiqcModule"]
4ac99d9851e31c263854bb6ac29a7d3ff8ec39c02e1e3fb97395aaa04cfea058
Python
62
3
from .core import contents, where __version__ = "2020.12.05"
506016751022e753d99ecf45e1552477f542d7844254a8c2680bc1aed4e79147
Python
62
3
from .rseqc import MultiqcModule __all__ = ["MultiqcModule"]
53905bc2d4868d81fcd979a1d82a2cdee4890cb04761a61330d7e46ee3d40628
Python
62
3
from .hicup import MultiqcModule __all__ = ["MultiqcModule"]
59f4eb06714f84fba20ef627a16bcef78b13bd2a9cc4fec87e136a7f06e1f820
Python
62
3
from .htseq import MultiqcModule __all__ = ["MultiqcModule"]
6ac1932a1278b4576b90151350b179887e7cdd796262459f7f6d450e177d563e
Python
62
3
from .bakta import MultiqcModule __all__ = ["MultiqcModule"]
71431ae53552d473e63c38f8aac6c7e37621ad3da892e6e6963f556fa82164d2
Python
62
3
from .dedup import MultiqcModule __all__ = ["MultiqcModule"]
7ac94a63c63db07585a114de3a09a964296930061976ead32f96402dfb369229
Python
62
3
from .happy import MultiqcModule __all__ = ["MultiqcModule"]
7d9aaa3b0a49ece08a6278bd7216edf284952bd2734d139434110e79fb40b8c5
Python
62
3
from .flash import MultiqcModule __all__ = ["MultiqcModule"]
7f878d42e7ec37b2475a720d0a144909bba717451fd4993f73c556aaac8c1f48
Python
62
3
from .bbmap import MultiqcModule __all__ = ["MultiqcModule"]
8dca5765e28e008a637393196e5bcfea304ea992d21c7313bafa9390788ede93
Python
62
3
from .sompy import MultiqcModule __all__ = ["MultiqcModule"]
948c256f7480297ecef925e3e6c72503702088283edd6d5e105e36b493f0b398
Python
62
3
from .fastp import MultiqcModule __all__ = ["MultiqcModule"]
9801ed526cd5e6bae115bab20961335344bd81a463b83646700b1beeb72c4fc9
Python
62
3
from .nanoq import MultiqcModule __all__ = ["MultiqcModule"]
a60982a1f1bca5af7569a7b5ff4991b3401cabf31cbb11929bfdbb6c03c2fc0e
Python
62
3
from .busco import MultiqcModule __all__ = ["MultiqcModule"]
cb3d059856e1c58b355c39289104f495a7c2f60b54bd9c786a81f4f0bc15e468
Python
62
3
from .humid import MultiqcModule __all__ = ["MultiqcModule"]
d552bbf1eea53e8731e10d68c2d65a377aa5a8648086e92ecb0ac9e78a0343b6
Python
62
3
from .seqfu import MultiqcModule __all__ = ["MultiqcModule"]
d8de781a4a29a999d753a88ab045cf4d9bc7772d02213cb891b675753109f7fd
Python
62
3
from .quast import MultiqcModule __all__ = ["MultiqcModule"]
dd52ef3f855edd7e4a5e5838ebe3b804df193314c0275e8dbca8ef4c2111642c
Python
62
3
from .peddy import MultiqcModule __all__ = ["MultiqcModule"]
e53b073c57718fcb0810f3021116edd6cb2e05feed4fb5cd3d1d00d29d190f5b
Python
62
3
from .homer import MultiqcModule __all__ = ["MultiqcModule"]
efd18ed7657be70c7c4246c997a920c3be02db70234c531953d5a61d689f0db0
Python
62
3
from .bbduk import MultiqcModule __all__ = ["MultiqcModule"]
f26a48952063710d94cfc7723a1c14306991423d9c9b97d29162486dd2a504ce
Python
62
1
from .empirical_distrebution import ecdf, lecdf_rvs, ecdf_rvs
f7123efa513c777c3d337dfb9528e7c3cf27bd0eacc8094a033924b49c9f68cc
Python
62
3
from .qorts import MultiqcModule __all__ = ["MultiqcModule"]
01d1eff0a5bb235bf4c22236e1a938a73bc96bf5d7eabbb7c1c20489cceacac1
Python
63
3
from .mirtop import MultiqcModule __all__ = ["MultiqcModule"]
06734e27c3448e5b3772154431bccc6fe1d15fd56486355294d21bb3f5d2ec7a
Python
63
3
from .seqwho import MultiqcModule __all__ = ["MultiqcModule"]
0a83b983d61efab34b845053e9d4a7d989ec3fa0aaca86e3cd1d9ae4ed9ab506
Python
63
3
from .seqkit import MultiqcModule __all__ = ["MultiqcModule"]
0aefae519b02ede1d3ef239207e40cd9a2a45ae5f0bdf8eea22f5e1e3fde1952
Python
63
3
from .picard import MultiqcModule __all__ = ["MultiqcModule"]
0e770c77d227bb8eab8fdf0150977301886e3c6a13675f1a362dda3c5eb3751e
Python
63
3
from .fastqc import MultiqcModule __all__ = ["MultiqcModule"]
1ca95e629ff5dce720d2ea00fcb51115a2604d0a8604ab5fda893e23015e9d2b
Python
63
3
from .dragen import MultiqcModule __all__ = ["MultiqcModule"]
1ccb001a3c76fd990949cbf7c5ce5dc7b7f8047307cbf0aed3016312944d894f
Python
63
3
from .hicpro import MultiqcModule __all__ = ["MultiqcModule"]
2958a3c2b01670c921f404cdad3744fc85ddc65627ebf0bcd5103db71802f0fb
Python
63
3
from .gtdbtk import MultiqcModule __all__ = ["MultiqcModule"]
3976729b6c6d08965ff265bff50321351a43064e33a07ccce8b0be1f92a2827c
Python
63
3
from .sickle import MultiqcModule __all__ = ["MultiqcModule"]
3a8650353e9bd1036cd7e2c3f96c800a5fe792692a1f8a1a082b36986cafcf70
Python
63
3
from .theta2 import MultiqcModule __all__ = ["MultiqcModule"]
3b18e18c9f8101ba1cfde1f80e18269b135558edf32729ad3f9ee96d5fab8b72
Python
63
3
from .salmon import MultiqcModule __all__ = ["MultiqcModule"]
3bba07976ca260e599e0acdcaf4c7e0084f9c79779e854c335f2046b36998521
Python
63
3
from .freyja import MultiqcModule __all__ = ["MultiqcModule"]
41d365f60c013fc08881d30e5256d0b613c3efc34b63e5a426353900d830f859
Python
63
3
from .snippy import MultiqcModule __all__ = ["MultiqcModule"]
4e47d571a8dc0cbef99a7f601edde98fbfcbe9b085c2cdf700dd65f8040b10d8
Python
63
3
from .bamdst import MultiqcModule __all__ = ["MultiqcModule"]
59e4fbf429b7236c55c01f649cd9c1c253f538c956ac316defed0aa3ef59cf14
Python
63
3
from .xenome import MultiqcModule __all__ = ["MultiqcModule"]
667a2f92d8c6168b3b57d2b59254aab46974fc12b840bb48ba1f318ebeff90e9
Python
63
3
from .prokka import MultiqcModule __all__ = ["MultiqcModule"]
6951ce8363fe460f6eeafb6dd36b30825f9eff5dedf915bc7f0f5c83a43b29e0
Python
63
3
from .leehom import MultiqcModule __all__ = ["MultiqcModule"]
910dfda4d97aa5aea428562333be44fdb35fa3e79e16a5595e726072431fdc82
Python
63
3
from .purple import MultiqcModule __all__ = ["MultiqcModule"]
9294f5caa97de399d77ca4608a317a90949b373c406cd6e2533946c299d32b18
Python
63
3
from .mgikit import MultiqcModule __all__ = ["MultiqcModule"]
94010b4c5aa6dbd6f3c30ae2d4f698809758a189bad865a68f5a6050f4e2bae0
Python
63
3
from .isoseq import MultiqcModule __all__ = ["MultiqcModule"]
a1d5f49bfcff20da46d1b0b2856698eca6aa6477aae5c7914ba0aa76716076ac
Python
63
3
from .kraken import MultiqcModule __all__ = ["MultiqcModule"]
a4c5a232828a4ac2a63d4f58d937221c8f89ffd2dfb2759921c2a1de696f3ec8
Python
63
3
from .preseq import MultiqcModule __all__ = ["MultiqcModule"]
a5d79e203a172a59afc0209a38cdcda5e2fd4bff4d547e804d47136a6eea0541
Python
63
3
from .telseq import MultiqcModule __all__ = ["MultiqcModule"]
a6ffa5d5080990cae16793fb264b47b4b28bb8a1a8f3f8086e06207e98baff19
Python
63
3
from .skewer import MultiqcModule __all__ = ["MultiqcModule"]
ab63f1040ffb36e01c0ea0a3437172501f8762ab31738700aa9ee420cbc72958
Python
63
3
from .checkm import MultiqcModule __all__ = ["MultiqcModule"]
bb43396dcddbe5d98943b9fdabfce0c3c67f89c72c08b301333fc55a3e603361
Python
63
3
from .deacon import MultiqcModule __all__ = ["MultiqcModule"]
bfcab19612822bf0b5c4c553ae4038f6fcf2ff840b5e5c56b4868807fab2be11
Python
63
3
from .tophat import MultiqcModule __all__ = ["MultiqcModule"]
ce3f239de8de5dc30f3804c24ad214927466a9d77fb6659cdaa1f4fa50bfa86e
Python
63
3
from .snpeff import MultiqcModule __all__ = ["MultiqcModule"]
d818e4fdc078f7ddb53d3bdeade5a9f194773612cda02300c874863fe39eb0b9
Python
63
2
# This file is protected via CODEOWNERS __version__ = "1.26.4"
e34b494a51a4af0d5df455f94765191035b37ee63fdde73db9ce62b79905c1db
Python
63
3
from .fastqe import MultiqcModule __all__ = ["MultiqcModule"]
e4797cffba6bf35b51519e45ebbb2c2863f33f692d9506ee3c93606ea0823eee
Python
63
3
from .stacks import MultiqcModule __all__ = ["MultiqcModule"]
ed7c2d1cbe8b32f07cf05bf26ab39cfd824112f9fd15392424de4c00d18de38f
Python
63
3
from .sincei import MultiqcModule __all__ = ["MultiqcModule"]
edcb3f27fcf455baa594f61300f3165d1bddd802c4ae895aebde51b307e1996d
Python
63
3
from .pycoqc import MultiqcModule __all__ = ["MultiqcModule"]
f0a1f9f082f51e864c7e457d95c044a9a4c2f7afd4c76623b60871ddb3b3184c
Python
63
3
from .hisat2 import MultiqcModule __all__ = ["MultiqcModule"]
f52d49a1a094b034470235e408f20a1b324124854be06ccd88fdc09ac694b414
Python
63
5
""" Welcome to KIMMDY! """ from __future__ import annotations
03e6324af61608dc1d6000a602b2ac18545c4ba08fab135829ae0a85fb240c27
Python
64
3
from .hostile import MultiqcModule __all__ = ["MultiqcModule"]
0a392059e05b68ea048a043230e3b699238aeb55018fb371df354b265c4f9929
Python
64
3
from .sequali import MultiqcModule __all__ = ["MultiqcModule"]
3a0323ca17f55a696078dfb6d59ca7351deec42c692cbab1f40bac1a2eb45512
Python
64
3
from .mgnifam import MultiqcModule __all__ = ["MultiqcModule"]
58f604eb6e0c66284dc5bb0be9aa6a2789eb294d558f74968fdc66c44cec938d
Python
64
3
from .truvari import MultiqcModule __all__ = ["MultiqcModule"]