sha256
stringlengths
64
64
language
stringclasses
27 values
size
int32
1
491k
lines
int32
1
21.8k
content
stringlengths
1
200k
5bf634386ba6c32f856dca442852f60c9a90d9ddf9709989ce49f2500fd6c600
Python
64
3
from .hifiasm import MultiqcModule __all__ = ["MultiqcModule"]
673df43fd8b375e0c1a335b699fbfa1d3139e42f28c8301b70e0ecf20383ef02
Python
64
3
from .interop import MultiqcModule __all__ = ["MultiqcModule"]
9627cfc25fe472fd58a760a8f08a825e835e829a81b4c76b288b32345fd07ce3
Python
64
3
from .bowtie1 import MultiqcModule __all__ = ["MultiqcModule"]
9ad375d9b8e6c97b0f66a1ac8ec5a708d605d0b5f874cf8d85c587d457ec31c7
Python
64
3
from .biscuit import MultiqcModule __all__ = ["MultiqcModule"]
a1c94687e8c91471909e1bfac70d29d6b90dd3665f442c9529a70dacfc9e2eb2
Python
64
3
from .diamond import MultiqcModule __all__ = ["MultiqcModule"]
a2b539158cfd968dfadb996ffb393e09ac125375ba13eac63108f24700dd4ca3
Python
64
3
from .conpair import MultiqcModule __all__ = ["MultiqcModule"]
a5f2c99f1910118b2f4977aa8319e3f9a53db932dce3dcaf4d88764be1867a14
Python
64
3
from .checkqc import MultiqcModule __all__ = ["MultiqcModule"]
aacdaa2561e4cfa055c521d1ab3192f11ee93e2cc489e9fc1fd723ea966c0a30
Python
64
3
from .afterqc import MultiqcModule __all__ = ["MultiqcModule"]
aeb8891fb23a19b8593d2897485cb76b3c043aaa591ce88b50720a65c306711a
Python
64
3
from .checkm2 import MultiqcModule __all__ = ["MultiqcModule"]
ba63e2b2e960f860031ff8d8032ba365207f8f37b386a8bae920567f2f68467a
Python
64
3
from .gopeaks import MultiqcModule __all__ = ["MultiqcModule"]
ba91cb76d1c51c3d35b222e1e1f1e1f10f56317bfc899bffd7baafc3b91d06b9
Python
64
3
from .bismark import MultiqcModule __all__ = ["MultiqcModule"]
babf0dd7b36c3c737eb5cb248cb02beacb6048289ac23d87a9a4586e09471c1b
Python
64
3
from .megahit import MultiqcModule __all__ = ["MultiqcModule"]
bdaea4f075b171d08a44af25154bf8fb93ae575fa9d1dc7704f553abf7531d1b
Python
64
3
from .flexbar import MultiqcModule __all__ = ["MultiqcModule"]
d8f52dfef06987e7209c342a1657afc6bc74cc6e18bc04de300d0dc4369cdf23
Python
64
3
from .bowtie2 import MultiqcModule __all__ = ["MultiqcModule"]
fbdd31dad3bafc10800d19ace2f6f1eb6307cbc32417eba17b328b1c7c070bbb
Python
64
3
from .glimpse import MultiqcModule __all__ = ["MultiqcModule"]
0f4df4e9ae2a37a3431fe81ab3eb8b0ad72e3aa8f3629cd65edc1c88a6e35e97
Python
65
3
from .porechop import MultiqcModule __all__ = ["MultiqcModule"]
25b7f0db42cb38cb5dd0e6b296f923c46b5a126056ad3574c2631cbcb29098c8
Python
65
3
from .vcftools import MultiqcModule __all__ = ["MultiqcModule"]
2c7524bf60c46a3016285cc30673c6e7a59150ad6fef364fd4447fced3555744
Python
65
3
from .samtools import MultiqcModule __all__ = ["MultiqcModule"]
2c9605397236bdefce606ad8c0c7d2b228ea84111336194ced72b2701cf6dfa9
Python
65
3
from .methylqa import MultiqcModule __all__ = ["MultiqcModule"]
3f5f86ccb50e7e6230f47e2bcc93bd4b4dd76785b248eceb7c46f626520566db
Python
65
3
from .minionqc import MultiqcModule __all__ = ["MultiqcModule"]
400bf0547954e8e4618b7c0fa3be76a9e459ffb1cfcc8c28610732f1c104dea8
Python
65
3
from .cutadapt import MultiqcModule __all__ = ["MultiqcModule"]
40f6c59c192d934c95637ae1bc6e855fde0b42de93f43acf82c66c56cab4ae1c
Python
65
3
from .sourmash import MultiqcModule __all__ = ["MultiqcModule"]
42c8a6ad38f2da1ed9f78bcac348079bcf540b5c66387a031d64303413d8da98
Python
65
3
from .nanostat import MultiqcModule __all__ = ["MultiqcModule"]
663bd4010b96edf8a44f799ec7b98632597cd08dfe503ebb6c65e7033ecbd11b
Python
65
3
from .sylphtax import MultiqcModule __all__ = ["MultiqcModule"]
67b94288a0168cef7e545793861857e4b8a61e49661c1a6834652cc3d64ef64c
Python
65
3
from .sargasso import MultiqcModule __all__ = ["MultiqcModule"]
68cd689e93e424577eb249719fd183cf26114b43f8c1dfb9d523ea5295f57783
Python
65
3
from .snpsplit import MultiqcModule __all__ = ["MultiqcModule"]
72ddef87493cd5d588bfda9c956156f0d32a4f39ec8ca6868818ee0a21b39c4e
Python
65
3
from .ribotish import MultiqcModule __all__ = ["MultiqcModule"]
81b35d1494572736ae5c6d62056308a7b2a0626ae7d0b5aeeda393c657543f54
Python
65
3
from .mosdepth import MultiqcModule __all__ = ["MultiqcModule"]
9adf2499ed1da87001996c2f814cc99cc55cf4d9fa2cc36f46554d1fa7f69800
Python
65
3
from .rna_seqc import MultiqcModule __all__ = ["MultiqcModule"]
9ea70e47740a0e112caaa4c9bdb7b5009530ac133886f8fbd6e16a7f7a0d98f9
Python
65
3
from .bcftools import MultiqcModule __all__ = ["MultiqcModule"]
9f7e9c0a814461d114a52c10c961a2cc6a49a3bb1c34cb250d6a49cd111c00a8
Python
65
3
from .filtlong import MultiqcModule __all__ = ["MultiqcModule"]
a6032707d14e593e9003a307c54e2080e1704ae179bdb492b953eb3cfb35571e
Python
65
3
from .optitype import MultiqcModule __all__ = ["MultiqcModule"]
bf3ceac6bf1722099de37b51ad91f318ed1a160b0d587c17dcb4336ea30fd54e
Python
65
3
from .somalier import MultiqcModule __all__ = ["MultiqcModule"]
c8411c3c0fae9e49264e3c0f6b5d405a324cbe161e56b1b48c4f1d1c43b1fae7
Python
65
3
from .kallisto import MultiqcModule __all__ = ["MultiqcModule"]
d0db23a696e6889e75b8c336382ad14b91972b7f4974118624a6002bea506125
Python
65
3
from .pangolin import MultiqcModule __all__ = ["MultiqcModule"]
d1ae67e0b77c2c27860be942d37984259275877d255f5e07788c6a4ad75622cf
Python
65
3
from .sambamba import MultiqcModule __all__ = ["MultiqcModule"]
d6c6a0d49b2fde1f8722f359950ce8cffd67476baea595f13622d403687c711f
Python
65
3
from .hicstuff import MultiqcModule __all__ = ["MultiqcModule"]
d8cf40a15ad8d8dcdb6d9865a96cf781c7bf385897e22e061d9026bb2a741cc1
Python
65
3
from .bamtools import MultiqcModule __all__ = ["MultiqcModule"]
d94eb2b01c76352eff6883cf409baa6af6f4fbb6f29684625caf5d3f6b6c2a11
Python
65
3
from .slamdunk import MultiqcModule __all__ = ["MultiqcModule"]
e23ece1458d8ee25414e4735915ff7f9f48d9c03138cb0b919f8e806236bcb7c
Python
65
3
from .whatshap import MultiqcModule __all__ = ["MultiqcModule"]
ee0e9a3d4d8980fef1aeecd394e55ab274b9994ed0fcf613ca5d929a2b67a0ea
Python
65
3
from .umitools import MultiqcModule __all__ = ["MultiqcModule"]
f1940d30e2769653cc2ee989ce58ec951175b35d180d39388ff8d57735428bdd
Python
65
3
from .mirtrace import MultiqcModule __all__ = ["MultiqcModule"]
f4db1a66d113006f5f0d6b0b8d90eb18db872632c118a3d73e88b435d2b7b42b
Python
65
3
import INSPIRE.utils import INSPIRE.networks import INSPIRE.model
f8d2c3d71df26afeea107952742d0987c76fb2a1e4cc5c204c11854e9e435f3f
Python
65
3
from .varscan2 import MultiqcModule __all__ = ["MultiqcModule"]
fd1c3846c4f2a036466b506622627b79b5b9fe55061de5220d7c1f31fb8c8ece
Python
65
3
from .bustools import MultiqcModule __all__ = ["MultiqcModule"]
ffa0f8951b0a13ccf18db23513f9f3f2b3ceaaba0ee9af11a4305457e197f54e
Python
65
3
from .xengsort import MultiqcModule __all__ = ["MultiqcModule"]
05bab0f8ea28cec775016ecca864a441e578dd6af2333734bfa07046f9a73d22
Python
66
3
from .librarian import MultiqcModule __all__ = ["MultiqcModule"]
24931e8bd9b1f919d04949c184c502e7126b9d7f2543930d4e2dd1fe0ded32bd
Python
66
3
from .mapdamage import MultiqcModule __all__ = ["MultiqcModule"]
2647ff0346f76a8a5047bf5a6989c7b84dddcda9dbdc2181a8014a2106995494
Python
66
3
from .pychopper import MultiqcModule __all__ = ["MultiqcModule"]
2e0d161d89090c67d6dcbd3cc6954cac12276e4f3d90630442a02045d8091dac
Python
66
3
from .sortmerna import MultiqcModule __all__ = ["MultiqcModule"]
2f8f14fef36b90c94482cbc5c2fcbdbf04d66dfea3272a463641c7d53569b897
Python
66
3
from .seqyclean import MultiqcModule __all__ = ["MultiqcModule"]
32d376f277feef2da88ce91fcc3d7d5ae94da74091f2f0638344853d6a2d0498
Python
66
3
from .deeptools import MultiqcModule __all__ = ["MultiqcModule"]
4c1ad4a33fe4fb8ead16bc1c1f8cbf1dba43841bd196733da53013d43de60183
Python
66
3
from .ribowaltz import MultiqcModule __all__ = ["MultiqcModule"]
4d6ff7935fb814f176223032a02ed3411172b536a5d784896f29d63e3b8b8481
Python
66
3
from .bcl2fastq import MultiqcModule __all__ = ["MultiqcModule"]
589dc0b30bc96fb96c8f97daa158fc3b5d6be179356316fd53225b2a367e8877
Python
66
3
from .jellyfish import MultiqcModule __all__ = ["MultiqcModule"]
5f0f582cca399fb917dcb183f487a586c94a9a6f37e6d82e6a7a9742e34ad334
Python
66
3
from .early_stopping import EarlyStopping __version__ = "1.0.10"
76717bc7a4ce2ae44b4f3608d5d028a35ee4e3973e82c31e14dbae25e0fd9e5a
Python
66
3
from .nextclade import MultiqcModule __all__ = ["MultiqcModule"]
7baeb95ff5de738f9625944fc4437c39b9fe4c44f33be46a184845b4be44ebff
Python
66
3
# -*- coding: utf-8 -*- """Unit test package for aicsimageio."""
7d47e9f18fe7a39dee51b6b40b950f0b1e8c7c7928d06bbb51e2f4580a83b317
Python
66
3
from .pairtools import MultiqcModule __all__ = ["MultiqcModule"]
812870f5a9634ea2cb7ff2b266f7b80776db5c0635c4e230dbc3bd9c99173ace
Python
66
3
from .supernova import MultiqcModule __all__ = ["MultiqcModule"]
c19e9c1cdc8d7ba6af8e7b42e679aa35bd54b7db07c0f8e480f306ae4a5cb67a
Python
66
3
from .ngsderive import MultiqcModule __all__ = ["MultiqcModule"]
d038918ae48f8010c9032ceb27482a32874779151519b4b765bfc5c64ee49f01
Python
66
3
from .metaphlan import MultiqcModule __all__ = ["MultiqcModule"]
e711537cdcad9e7895e3b89f8ae9bc90d3c04d38162416fd4c1fdf362e717b69
Python
66
3
from .nonpareil import MultiqcModule __all__ = ["MultiqcModule"]
eca5f338a1ce599e6feb7c2dbf1325ba848eab7751048e8ce8079d5e52a99069
Python
66
3
from .pbmarkdup import MultiqcModule __all__ = ["MultiqcModule"]
020352b4402e7120867b6f9da2e2fc982c62cb17e678ff56e51355389e7e3e69
Python
67
3
from .seqera_cli import MultiqcModule __all__ = ["MultiqcModule"]
0ac1f3a416e21bfa8a834094bef3907d4b07a6616d59b388769a7d60e33fa16d
Python
67
3
from .cellranger import MultiqcModule __all__ = ["MultiqcModule"]
1b17afd6a235cdfd3b5751dfb04aa7f4bb10c993b8dbf0f88dd1dff0fda46694
Python
67
3
from .methurator import MultiqcModule __all__ = ["MultiqcModule"]
2386401a17aaccdd3077530fa3f2ac5028742b6d58af69596eabf49987b4803e
Python
67
3
from .percolator import MultiqcModule __all__ = ["MultiqcModule"]
254bf215cf94f33d8f9f245b1e1ab60df9c438d8c6db3b17f49d8fa27c0b25cc
Python
67
3
from .longranger import MultiqcModule __all__ = ["MultiqcModule"]
2df8f60e320d40b1a333655a3624361f72d48ea35078960801835e2750e2b4df
Python
67
3
from .rockhopper import MultiqcModule __all__ = ["MultiqcModule"]
a118475de29bcb08a204eb06b5bba2c053ed7f0eb5c470fb8c295539ba3b0b3c
Python
67
3
from .bclconvert import MultiqcModule __all__ = ["MultiqcModule"]
a9d6c116dc355ea894f4a956e977f0104e57485bfb01d1f74e694883409336c4
Python
67
3
from .gffcompare import MultiqcModule __all__ = ["MultiqcModule"]
aab1b5ad67437936436de2c92b463cc1f4e9a45b4b4f321286865900abf450cd
Python
67
3
from .mtnucratio import MultiqcModule __all__ = ["MultiqcModule"]
c931b4aa1ebf41ca1fa435a26a482e873f46c1aa56545b5c9c8b9ee9388e8b1f
Python
67
3
from .checkatlas import MultiqcModule __all__ = ["MultiqcModule"]
e60f702b60c14918d53cc4829b080405f92c32ab19177fc3bb724be0008a545e
Python
67
3
from .haplocheck import MultiqcModule __all__ = ["MultiqcModule"]
ed14d05b97f719679cedd91187199ac3fcbaf5da6e8b70f64fbe25aa55f9264c
Python
67
3
from .biobambam2 import MultiqcModule __all__ = ["MultiqcModule"]
f9613ecb19cdfb8da05d34b6740424a0bfc81a22bc19a8021b875f7c11195728
Python
67
3
from .anglerfish import MultiqcModule __all__ = ["MultiqcModule"]
fc0434753fa343ee8cefc3ddd0d1e1cd0e61ec8948bb81ab5df0fb70bdf802a0
Python
67
3
from .samblaster import MultiqcModule __all__ = ["MultiqcModule"]
11309a57932374f4157636eb432410213011da6052684d0b9e170901809146dc
Python
68
3
from .bases2fastq import MultiqcModule __all__ = ["MultiqcModule"]
41063fb2421594781bb050c59a7efdcc77be92f579543154c8a08aaf8df1ed93
Python
68
3
from .verifybamid import MultiqcModule __all__ = ["MultiqcModule"]
4b5c1df748f1c1c068e5e6f6218ecb478bf3877852d93f6f32ddf99c29e359e8
Python
68
3
from .hicexplorer import MultiqcModule __all__ = ["MultiqcModule"]
4d097ac4ff77a8dc2d0cf9ef15d86f2850a43bae3f4e04066cda4b8e9269ec08
Python
68
3
from .cells2stats import MultiqcModule __all__ = ["MultiqcModule"]
55b187d8db7720e689784807dd47a36d96e51c3fd6b2110476ba65b558ac35af
Python
68
3
from .trimmomatic import MultiqcModule __all__ = ["MultiqcModule"]
66afbc67d3ca88172a75b9348fd999f78d235e90af329881240ebae62a4d363e
Python
68
3
from .clusterflow import MultiqcModule __all__ = ["MultiqcModule"]
87a3865f53b24cb9805ec4bf6e2064bacdb26a5bc08f51d1f21621008fb92929
Python
68
3
from .trim_galore import MultiqcModule __all__ = ["MultiqcModule"]
ab4880d0f3f888738023ab5f3d54d11660cc0dad3420bb6d2315e88779d03a35
Python
68
3
from .spaceranger import MultiqcModule __all__ = ["MultiqcModule"]
c501214492aad083fd8642adef80e0c4c00f351d898e33d4fd61d4c1827896a2
Python
68
3
""" src/augmentation — Constructive Instance Space Population """
ce01d4cb60b1c819f92fba43a778f068a7c7e6b3a8172f1d00ca942cae764b01
Python
68
3
from .umicollapse import MultiqcModule __all__ = ["MultiqcModule"]
fdad22401e74a39705fadf9223912468ff2809e0d673640abc9d26eb6f13ca9f
Python
68
3
""" Chemistry agent module for working with chemical structures. """
3e92c54c9f172133a542b47849caffb899be6eda85c1abe0ce7100c8ff9a68e0
Python
69
3
""" Assorted utilities, including resonance structure generation """
7ddab78d12db8075159f4da9a8a3f347e98622c9ed3eac1ce22937ee399e5fca
Python
69
3
from .fastq_screen import MultiqcModule __all__ = ["MultiqcModule"]
82f017ad2b6558e3c3906589b2a3383c56b877c762ba632ebaab732aae8918c6
Python
69
3
from .hifi_trimmer import MultiqcModule __all__ = ["MultiqcModule"]
86cd9e9ccf7f420406d090d950a9aa7b86f0b724ddf12c120cfeb99142689c6e
Python
69
3
from .clipandmerge import MultiqcModule __all__ = ["MultiqcModule"]
a61fb9c777f08ebf5a682687e9139c1a0e152252d1b630bc453bc44df4cad08a
Python
69
3
from .disambiguate import MultiqcModule __all__ = ["MultiqcModule"]
d6ebbf102d5f398c361882e016a1a4bd7f4877126794968ad6ce1f6c895c12f6
Python
69
3
from .ribodetector import MultiqcModule __all__ = ["MultiqcModule"]
d99f1876c10f5b482d9532375cc32269784075665ad23a4339889d65213cf527
Python
69
3
from .mosaicatcher import MultiqcModule __all__ = ["MultiqcModule"]
054c31943252da5c99479599ae440a3f48d5dd7ff75d430f21ee84b9d6aa9f46
Python
70
3
from .dragen_fastqc import MultiqcModule __all__ = ["MultiqcModule"]
53da61e1b19c97a8ea0e81480147e94dbd0035e504835a09b17bfc9a376931a0
Python
70
3
from .sexdeterrmine import MultiqcModule __all__ = ["MultiqcModule"]
9dcfad688211022cfcff390878272dc4af1ec42e6608008e0c5147dcaa951977
Python
70
3
from .featurecounts import MultiqcModule __all__ = ["MultiqcModule"]
a0765799e18068e45bf36390fbfad6bdfb25f6c6ebc09eca59067d3726920c34
Python
70
3
from .biobloomtools import MultiqcModule __all__ = ["MultiqcModule"]