sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
22dd5c5974134b3fde565c3bdb415ccd30b0925ada5595b2d1006090ef25f8fc | MATLAB | 746 | 31 | function test_permuztest
%TEST_PERMUZTEST Unit tests for permuztest.m.
% © 2018-2026 Mick Crosse <crossemj@tcd.ie>
% CNL, Albert Einstein College of Medicine, NY.
% TCBE, Trinity College Dublin, Ireland.
% Generate test data
rng(42);
x = randn(30,20);
m = 0;
sigma = 1;
tail = {'both','right','left'};
for i = ... |
57a47359c4727d953dedbe9c67915c269dedcbfdb33fbc4f08d2a352c664215d | MATLAB | 746 | 31 | function test_permuztest
%TEST_PERMUZTEST Unit tests for permuztest.m.
% © 2018-2023 Mick Crosse <crossemj@tcd.ie>
% CNL, Albert Einstein College of Medicine, NY.
% TCBE, Trinity College Dublin, Ireland.
% Generate test data
rng(42);
x = randn(30,20);
m = 0;
sigma = 1;
tail = {'both','right','left'};
for i = ... |
e2d4606a7dcbe3e414e8ed5eb3c401b86cb457c3a3b3929406ad56d5ecdbc5bf | MATLAB | 747 | 43 | function [num, num3, ax1Pos, x, y, x2, y2, yNew, y2New] = setThirdAxis(refAxes, av, md)
ax1Pos = get(refAxes,'position');
set(gcf, 'currentAxes', refAxes);
% Get the normalized x-y coordinates of the means
[x,y] = dsxy2figxy(gca, 1, av(1));
[x2, y2] = dsxy2figxy(gca, 2, av(2));
refLims = get(refAxes, 'YLim');
n... |
0ad6b07f6e08e90dca2aa60a7b76df121ed41d065de627c7011faa318b25c911 | MATLAB | 748 | 31 | function hnew = outlinebounds(hl, hp)
%OUTLINEBOUNDS Outline the patch of a boundedline
%
% hnew = outlinebounds(hl, hp)
%
% This function adds an outline to the patch objects created by
% boundedline, matching the color of the central line associated with each
% patch.
%
% Input variables:
%
% hl: handles to lin... |
7f318d288b7181a61a92707d0a5e5e6c308fd20c5db8b24a4cbd26c792e062f1 | MATLAB | 748 | 25 | function [ratname,session,tetrode,unit] = cellid2tags(cellid)
%CELLID2TAGS Convert cell IDs to separate tags.
% [RATNAME,SESSION,TETRODE,UNIT] = CELLID2TAGS(CELLID) parses CELLID
% string to RATNAME, SESSION, TETRODE and UNIT strings.
%
% See also CELLID2FNAMES.
% Edit log: BH 6/23/11
% Convert cell ID
if... |
08320d50727bd315635c289a79159f7178eda148abee9e50b4e74e361ced5510 | MATLAB | 749 | 26 | %% Fig5
% set working paths
statdir=[Pathnew,'Forgithub\Code'];
savedir=[Pathnew,'Forgithub'];
Pathnewplot=[Pathnew,'Forgithub'];
cd(Pathnewplot)
load([Pathnew,'Forgithub\Data\Gretna_results\Subset1\gretna_results_subset1.mat']);
load([Pathnew,'Forgithub\Data\Network\Subset1\Matrixallpar500FN_subset1.mat']);
... |
8f6d6d0c55bb4503b6e6636ba296e8ad2a08639f0946b48f25bdcf7a669a9ed5 | MATLAB | 749 | 33 | function faceGrad = gradientTerm1D(phi)
% this function calculates the gradient of a variable in x direction
% it checks for the availability of the ghost variables and use them, otherwise
% estimate them, assuming a zero gradient on the boundaries
%
% SYNOPSIS:
% faceGrad = gradientTerm1D(phi)
%
% PARAMETERS:
%
%
% ... |
bee98c51ef1d44167e9c7093f3e637d477deb9102e9e41961a4d6cfd31c4695f | MATLAB | 749 | 33 | function str_out = str_splitSortDelWM(str_in, delimiter)
% splits string to cell array based on delimiter '/'
% sorts alphabetically
% removes any occurances of 'wm'
% cats again to string
% (c) Jiri, Aug22
if nargin < 2
delimiter = '/'; % default
end
if isempty(strfind(str_in, '/'))
str_out = str_in; %... |
7579bf9197cc095d8641df630564e1e5d5c8df27c6a1a0ae019e6505dc420bff | MATLAB | 750 | 26 | % plotSettings
% Returns a structure of plot settings for the pSFT toolbox
function plot_settings = plotSettings()
%% Font settings
plot_settings.font_type = 'Helvetica';
plot_settings.axes_label_font_size = 14;
plot_settings.axes_tick_font_size = 13;
plot_settings.tick_length = 0.020;
plot_settings.line_width = 1... |
7684b381b1d75fd4331ad66d42e1bbf609c4f079e726377bf9fad22b8c77b53a | MATLAB | 750 | 27 | % Wrapper for BilinearSampler block:
% (c) 2016 Ankush Gupta
classdef BilinearSampler < dagnn.Layer
methods
function outputs = forward(obj, inputs, params)
outputs = vl_nnbilinearsampler(inputs{1}, inputs{2});
outputs = {outputs};
end
function [derInputs, derParams] = backward(obj, inputs, p... |
f821c4bc187d6310fb4e268fe73490dbc2ed9d97bece92d1156970267e17dd1f | MATLAB | 750 | 28 | function xyz = getSelChnlsMNI(params, dataTag)
% loads header H and finds the used channels and returns their MNI coors
% in case of bipolar reference, returns mean of the 2 bipolar channels MNI
% (c) Jiri, Feb17, Nov18
if nargin < 2
dataTag = 'resp';
end
%% load header structure 'H'
load(params.storage.cacheFil... |
0d81970d7af629272c1850d87fec7121496c4e6f62aba2e2fed8317f75d1707f | MATLAB | 751 | 25 | function varargout = covGaboriso(varargin)
% Wrapper for Gabor covariance function covGabor.m.
%
% Gabor covariance function with length scale ell and period p. The
% covariance function is parameterized as:
%
% k(x,z) = h(x-z) with h(t) = exp(-t'*t/(2*ell^2))*cos(2*pi*sum(t)/p).
%
% The hyperparameters are:
%
% hyp ... |
2e23a3525a0caf44996c07de4b07d1c9bea331f9219469cc9b0f02b5d78fb0b2 | MATLAB | 751 | 32 | function S = sero_srr_fit2data(T, tr, b, do_t1, do_v, W, te)
% function S = sero_srr_fit2data(T, tr, b, do_t1, W, te)
if nargin < 7
te = [];
end
if ~do_v
T(:,4) = 0;
end
switch do_t1
case 0 % No T1 effects
T1W = double(tr>0);
case 1 % Simplistic T1 effect
T1W = 1-exp(-tr./T(:,3)');
... |
594681cd336b0ca2270493203e5d4e3ce4450f7f4ed23645e4b34e1a949d6678 | MATLAB | 751 | 28 | %%
% Load the MRI data, correct the transformation matrix, and save as NIfTI files
%%
addpath '/fieldtrip-20240110/' %add fieldtrip to the MATLAB path
ft_defaults
mri_files = dir([main_path '/Dataset/*mri_anon.mat']);
subids={};
for j=1:148
subids{j} = sprintf('RSID%04d',j);
end
for k = 1:length(mri_files)
m... |
9b203a62996d0ef676dd5667871d1357165329b10306d6b122a51e5a6404637a | MATLAB | 751 | 19 | function [pvec, pstruct] = tapas_condhalluc_obs2_transp(r, ptrans)
% --------------------------------------------------------------------------------------------------
% Copyright (C) 2016 Christoph Mathys, TNU, UZH & ETHZ
%
% This file is part of the HGF toolbox, which is released under the terms of the GNU General Pu... |
e1053be0220b9e6cb13e917561ba9ec1c0106f455a48937dfabab4dbff4a1eb4 | MATLAB | 751 | 22 | function [sigma, baseline] = findsigma(trace, blperiod, blfraction)
% Find the standard deviation sigma of the baseline from a calcium
% recording in vivo. Assume that the trace contains at least %blfraction of
% baseline segments of length 'blperiod' that contain no transients and
% therefore accurately represent ... |
fff2486a8dcfdf1ff0f990fe6e6312c81f80cf878fabb4aafe56c05766624f5c | MATLAB | 751 | 29 | function tapas_BLT_runITI(params, iTrial)
% tapas_BLT_runITI shows the Fixation Cross
%
% About:
% Coded by F.Petzschner 19. April 2017
% Last change: F.Petzschner 19. April 2017
% Show Cue
Screen('DrawTexture', params.screen.window, params.text.imgiti, [], params.screen.fit, 0);
Screen('Flip', params.screen.window... |
07fde86e0f65ff6e7e871ca41af98d181e05b93d5e1dcd6bcae1aaa5096f8df2 | MATLAB | 752 | 28 | function [complete]=colorvarmap(mphase,mvar,filtopt)
% plot a phase colromap modulated by variance of phase
nmvar=zeros(size(mvar,1),size(mvar,2));
complete=0;
clsc=load('smooth-cool-warm-table-float-1024-zn.txt');
clscale=clsc(:,2:4);
c=clscale;
% normalize variance between 0 and 1
nmvar=1-(mvar-min(min((mvar))))./r... |
e182d58b6aadd4042c4699c4f00e5c70691e39b4fb492ea03743d10e34c9d481 | MATLAB | 753 | 27 | % Wrapper for BilinearSampler block:
% (c) 2016 Ankush Gupta
classdef BilinearSampler < dagnn_bc.Layer
methods
function outputs = forward(obj, inputs, params)
outputs = vl_nnbilinearsampler(inputs{1}, inputs{2});
outputs = {outputs};
end
function [derInputs, derParams] = backward(obj, inputs... |
f302c5e96f06f247aa87ea6a2fe0b539f279451f05d6c09ff9669d21405d933c | MATLAB | 753 | 34 | % function e = MS_rms(y);
%
% e is the l2-norm of row vector y, for a n-by-m matrix e is the n-by-1 column
% vector which is the l2-norm of the n rows of y.;
%
% Michael Small
% michael.small@uwa.edu.au, http://school.maths.uwa.edu.au/~small/
% 3/3/2005
% For further details, please see M. Small. Applied Nonlinear Tim... |
38b23db2d6c9f75264adfc3260b71103ebd944b79c217b81c18f650534b36ea6 | MATLAB | 754 | 18 | function [pvec, pstruct] = tapas_gaussian_obs_offset_transp(r, ptrans)
% --------------------------------------------------------------------------------------------------
% Copyright (C) 2018 Christoph Mathys, TNU, UZH & ETHZ
%
% This file is part of the HGF toolbox, which is released under the terms of the GNU Genera... |
65321f5a784fa7b9d1e6b5abdfb5e4a7f58342c4c059eb24f822335e9744698b | MATLAB | 754 | 35 | function plot_confusion_matrix(C,last_is_unlabeled,class_labels)
%function plot_confusion_matrix(C,last_is_unlabeled,class_labels)
%
% plot a confusion matrix with overlayed numbers
%
% 10/31/2012 - Taylor C. Glenn - tcg@cise.ufl.edu
if last_is_unlabeled
class_labels = [class_labels 'Unlabeled'];
normC =... |
4a5150bf4380de3da8f607e1a3e8d61644f12f09102c4a4d665f0c4480717d00 | MATLAB | 755 | 24 | %{
# clips from movies
animal_id : int # id number
session : smallint # session index for the mouse
area : enum('A','POR','P','PM','AM','RL','AL','LI','LM','V1') # area name
scan_idx : smallint... |
f303e8606268181b059ebc63310f431d576a8a5441ccc25e399cb3c54572e455 | MATLAB | 756 | 34 | function [z,pint] = segcircintersect(p1,p2,cent,R)
% intersection of line segment between p0 and p1, with circle
% with center cent and radius R
% p0 and p1 should be row vectors for the segment endpoint
% returns z = fraction along segment where intersection occurs
% and pint = intersection coords
%%
dx = p2-p1;
p0... |
a7ae2da08d197bfed268aca8b8c8c75dfc258c20ffa2270f15c175c966aa9c6e | MATLAB | 757 | 37 | function [llh] = tapas_sem_prosa_llh(y, u, theta, ptheta)
%% Computes the likelihood of the data.
%
% Input
%
% y -- Observed behavioral data. A structure with fields 't' times and 'a'
% action
% u -- Experimental input. A structure with fields: 'tt' trial type, either
% prosaccade or antisaccade
% ... |
ffaf40515bd9439df5b2dab862397c99b5f0c5b3aefbc806e23305de490a2a4b | MATLAB | 757 | 26 | function versionPhysio = tapas_physio_version()
% returns version number of this copy of PhysIO
%
% versionPhysio = tapas_physio_version()
%
% IN
%
% OUT
%
% EXAMPLE
% tapas_physio_version
%
% See also
% Author: Lars Kasper
% Created: 2018-10-19
% Copyright (C) 2018 TNU, Institute for Biomedical Engineering,
% ... |
032807af67ade3aaeb8e2a5546894cb9c894d2686390df3fc03625e67680f68c | MATLAB | 758 | 46 | function [f,g] = NetVis_Jtilda2d(x,y,n)
% does estimation of the repulsion forces
% using RANK and ROTATE algorithm
% Code provided by David Smith
N = length(x);
if nargin < 3
n = 10;
end
multfactor = pi/(n*4);
% Initialization:
xrank = zeros(N,1);
yrank = zeros(N,1);
p = pi/(2*n);
[~, xind] = sort(x);
xrank(xin... |
16247fb9d34a1593ab27a5909ff4a6675db7bf965c9c998ba9ab2c1e6441276f | MATLAB | 758 | 26 | function [filter] = tapas_uniqc_raised_cosine(f, T, beta)
% creates a raised cosine window for frequency domain filtering
%
% USE
% [filter] = tapas_uniqc_raised_cosine(f, T, beta)
%
% IN
% f [nr_samples x 1]; frequency vector
% T [scalar]; 1/BW at FWHM of the window
% beta [scalar]; roll-off fact... |
278f981f5ba4b9c2007f3d4766aad1795604c8fdacd5fb0145c930ddb55a3934 | MATLAB | 758 | 25 | % eeg_icalabelstat - show some stats about IC label
%
% Input:
% EEG - EEGLAB dataset
% threshold - threshold for belonging to a category (default 0.9
% corresponding to 90%
%
% Author: A. Delorme
function eeg_icalabelstat(EEG, threshold)
if nargin < 1
help eeg_icalabelstat;
return;
end
... |
3ca06e9ca32766a237531b5bbe8fd6a4f4f7b5c5a34a3160edf2d43a89aa010b | MATLAB | 758 | 26 | function [ d_sec,times_sec ] = d_assemblies( Pks_Frame,sec_Pk_edos )
%LCFeb14
%Genera un arreglo de primitivos y un arreglo de tiempos para cada par
%d_sec [edoa,edob]
%time_sec [frame edoa]
d_p=find(sec_Pk_edos>0);
d_n=size(d_p,2)-1;
d_sec=zeros(d_n,2);
times_sec=zeros(d_n,1);
for dai=1:d_n
if sec_Pk_edos(d_p(dai... |
eff170a318bc7031392ed6ee0532245a21c1fa7f3fbef0b128dd2d536044c173 | MATLAB | 758 | 18 | function [pvec, pstruct] = tapas_softmax_mu3_wld_transp(r, ptrans)
% --------------------------------------------------------------------------------------------------
% Copyright (C) 2018 Christoph Mathys, TNU, UZH & ETHZ
%
% This file is part of the HGF toolbox, which is released under the terms of the GNU General Pu... |
8561287dcdee09632432d1dacec1a14d3946cfbb54b83b5e94d6784f87cd913f | MATLAB | 759 | 31 | function fn = tapas_physio_get_filename_from_id_philips(fileID, dirRaw, ext)
%searches for matching filename with fileID in dirRaw
%
% output = get_filename_from_id(input)
%
% IN
% fileID e.g. 8
% dirRaw folder with raw files
% ext {'.nii'} file extension
% OUT
%
% EXAMPLE
% get_filename_from_id
%
% S... |
48fcc025f5b0cc86b4322cd4a1494f19ebb54649f94b69240a25ab978f0882a8 | MATLAB | 761 | 22 | % M2HTML Toolbox - A Documentation Generator for Matlab in HTML
% Version 1.5 01-May-2005
%
% M2HTML main functions.
% m2html - Documentation System for Matlab M-files in HTML.
% mdot - Wrapper to GraphViz's <mdot> for dependency graphs.
% mwizard - Graphical user interface for m2html.
% private - Inte... |
d84536f69e41386c24b817560f2b5777001ffec5290ffd98ccb9cd3ecd50e17b | MATLAB | 761 | 25 | function sqnorm = multisqnorm(A)
% Returns the squared Frobenius norms of the slices of a 3D matrix.
%
% function sqnorm = multisqnorm(A)
%
% Given a 3-dimensional matrix A of size n-by-m-by-N, returns a column
% vector of length N such that sqnorm(i) = norm(A(:, :, i), 'fro')^2.
%
% See also: multiprod multitransp mul... |
43b3d9ba4a7dc36ddb50938bf5f7004597c604b3ecaa8c5ff4a930a1bc0bce06 | MATLAB | 762 | 25 | %{
# quantal size in images
-> reso.Quality
-> shared.Field
-> shared.Channel
---
min_intensity : int # min value in movie
max_intensity : int # max value in movie
quantal_size : float # variance slope... |
de233c009b362ff04e11d85ae6e3b0bd2ffd3a9c8e339641240c18734a00a3de | MATLAB | 762 | 25 | %{
# quantal size in images
-> meso.Quality
-> shared.Field
-> shared.Channel
---
min_intensity : int # min value in movie
max_intensity : int # max value in movie
quantal_size : float # variance slope... |
ed89c6a4d53af6f31d81c38063cc00f950215aeec852f3abc460f9814c0c69d8 | MATLAB | 762 | 37 | function cb = colorbar_range( clim );
%Sets the colour limits for SurfStatView.
%
% Usage: cb = colorbar_range( clim );
%
% clim = [min, max] values of data for colour limits.
%
% cb = handle to new colorbar.
a=get(gcf,'Children');
k=0;
for i=1:length(a)
tag=get(a(i),'Tag');
if strcmp(tag,'Colorbar')
... |
22e6b779aad7ca7f9ade226d8f0070c178706c96c7f8ee94c1e7ccaf8da6e7c7 | MATLAB | 763 | 22 | function initParams(obj)
% INITPARAM Initialize the paramers of the DagNN
% OBJ.INITPARAM() uses the INIT() method of each layer to initialize
% the corresponding parameters (usually randomly).
% Copyright (C) 2015 Karel Lenc and Andrea Vedaldi.
% All rights reserved.
%
% This file is part of the VLFeat library a... |
d4a5887a1b66a7704dab8fd3948e2299a9c23287ac3bd79c7e1d6be1c804f6a1 | MATLAB | 763 | 31 | function osp_onGit( ~, ~)
%% osp_onGit
% Callback function on git button click. Visits GitHub Schorschinho.
%
%
% USAGE:
% osp_onGit( ~, ~ );
%
%
%
%
% AUTHORS:
% Dr. Helge Zoellner (Johns Hopkins University, 2020-01-16)
% hzoelln2@jhmi.edu
%
% CREDITS:
% This code is based on numerous f... |
ea0a2f30907f38689e4fc70df6dbc9776c1b1fac535c3a5e76f3e13e7f57a016 | MATLAB | 763 | 25 | function exel = sero_pulseq_posandb2excutionlist(posi, sthi, bval, dz)
% function exel = sero_pulseq_posandb2excutionlist(posi, sthi, bval, dz)
% posi = position indices
% sthi = slice thickness in number of voxel indices
% bval = shot-wise b-values in s/m2 with arbitrary scale
% dz = step distance in meters
% Numbe... |
898d8a772fc471dcf39b053d04e90711fb42c39ecd8c19cbd21277505c41e7ab | MATLAB | 764 | 18 | function [pvec, pstruct] = tapas_rw_binary_transp(r, ptrans)
% --------------------------------------------------------------------------------------------------
% Copyright (C) 2012-2013 Christoph Mathys, TNU, UZH & ETHZ
%
% This file is part of the HGF toolbox, which is released under the terms of the GNU General Pub... |
a0d6aec0cffce4d63135a0ed34abdd0710aae113c304e2391649744618dd8e88 | MATLAB | 764 | 20 | function gen_ssvkernel_reference()
% Ground truth for the ssvkernel port. Reads fixed PSTH-sample inputs
% (ssvkernel_inputs.mat: tin + x_big/x_mid/x_small, pooled from real analyzed
% channels) and runs MEA-NAP's ssvkernel.m on each, saving y/optw.
% Regenerate with: matlab -batch gen_ssvkernel_reference
addpath(genpa... |
b56f135bed9ef9e66f4efdd882032085f4412986e5963208647cdd701e872bb1 | MATLAB | 764 | 44 | function simpleExamples
%
% clf
%
% subplot(2,2,1)
% notBoxPlot(randn(20,5));
%
% subplot(2,2,2)
% notBoxPlot(randn(20,5),[1:4,7]);
%
% subplot(2,2,3)
% h=notBoxPlot(randn(10,20));
% d=[h.data];
% set(d(1:4:end),'markerfacecolor',[0.4,1,0.4],'color',[0,0.4,0])
%
% subplot(2,2,4)
% x=[1,2,3,4,5,5];
% y=randn(20,len... |
a2a10bad048a68a2f6673965f026149fb10f5738cf7abc7c976dda0ee293e182 | MATLAB | 765 | 21 | function lambda = resolve_default_lambda(lambda, X)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% resolve_default_lambda returns the default 1/nTrain lambda when the
% model parameter does not specify an explicit value.
%
% Arguments:
% lambda: User-specified lambda. Empty means use th... |
af4d1aeb5d1a6b6010a8686c72d0d679656306951b953d72dfb95b4e04e7c077 | MATLAB | 765 | 28 | function renameLayer(obj, oldName, newName, varargin)
%RENAMELAYER Rename a layer
% RENAMELAYER(OLDNAME, NEWNAME) changes the name of the layer
% OLDNAME into NEWNAME. NEWNAME should not be the name of an
% existing layer.
opts.quiet = false ;
opts = vl_argparse(opts, varargin) ;
% Find the layer to rename
v = ... |
c17b3515926e2024e92b75b4a74cbe7ddc9a5abf0d7c94cd22359400697b3163 | MATLAB | 765 | 21 | % Figure 3 (Saccades in social hierarchy)
% The two scripts generate the components of Fig. 3 in the paper
% separately for the BLA and CMA nuclei of the amygdala, respectively.
clear all;close all
grand_average_SACC6z_BLA
close all;clear all
grand_average_SACC6z_CMA
% Figure 4 (Joint Attention and Gaze-Follow... |
d1bcc7541b01e530d9c5da6d247a914c4ab61271583f1ac81f4bb40115a2238d | MATLAB | 765 | 33 | function measure = radius2measure(radius, dim)
%RADIUS2MEASURE Compute the measure from the radius.
%
% DESCRIPTION:
% radius2measure computes the area or volume (collectively called the
% measure) from the radius.
%
% USAGE:
% measure = radius2measure(radius, dim)
%
% INPUTS:
% radius - Radius [... |
30a954af8bfa194c5538d5afc80287761025a34e3cfb63247fd37b5673b2b395 | MATLAB | 766 | 23 | function [cfg, isDefault] = checkParameter(cfg, fieldname, default)
% Helper function to set default parameters if necessary
%
% function [cfg, isDefault] = checkParameter(cfg, fieldname, default)
%
% Checks if a field with name fieldname exists in structure cfg. If not, or
% if it is empty, sets it to default, o... |
49be0a9db4594d0af1eb588d5e9b44b2c82b1b5d5f131fa3acd1e142375286ad | MATLAB | 766 | 20 | % (C) Copyright 2020 CPP visual motion localizer developpers
function [conditionNamesVector, CONDITON1_INDEX, CONDITON2_INDEX] = assignConditions(cfg)
[~, nbRepet] = getDesignInput(cfg);
conditionNamesVector = repmat(cfg.design.names, nbRepet, 1);
conditionNamesVector = conditionNamesVector(cfg.design.bl... |
545c87d02b5163b73f56d61ca65cf89d2d72f243a8b6aa5ea42cdc22ac1cb2d9 | MATLAB | 766 | 33 | function RHS = constantSourceTerm3D(phi)
% RHS vector for a Explicit source term
%
% SYNOPSIS:
% RHS = constantSourceTerm3D(phi)
%
% PARAMETERS:
%
%
% RETURNS:
%
%
% EXAMPLE:
%
% SEE ALSO:
%
% Copyright (c) 2012-2016 Ali Akbar Eftekhari
% See the license file
% extract data from the mesh structure
Nxyz = phi.domain... |
844a2eb9310c704a3a316321bb2cc2a9249c9cebf1b732bcbb99665ab8631f9e | MATLAB | 767 | 37 | %% MOTIMUS fNIRS DATA PROCESSING %%
% Ségolène M. R. Guérin
% June 26, 2023
%% ----- PREAMBLE
% Clear workspace and commmand window
clear
clc
% Empty lib paths
restoredefaultpath;
% Load project lib and function paths
addpath(genpath('lib'));
addpath(genpath('matlab_functions'));
% Get parameters
params = motimus_g... |
aa2521562a39f56f7b529c3d8089a98137a2a0a953617cac3b232c033fcfeca1 | MATLAB | 768 | 43 | function [Sd] = zdeblank (S)
%
% [Sd] = zdeblank (s)
%
%Purpose:
% removes blanks surrounding a word in S
%
%
%Input Parameters:
% S : a string
%
%
%Output Parameters:
% Sd : S without the surrounding blanks
%
%
%Key Terms:
%
%More Info :
% deblank, zdeblankall
%
%
%
% Author : Ziad Saad
% Date : Tue S... |
ecffe779ef4b9e1ef6b10cb621b01f02cd9c40230d92ff81804a9d3aa271c6c2 | MATLAB | 768 | 28 | function [output_struct] = concat_cell_struct(event_frames)
% concatenate data fields in the structures in a cell array into one structure
if numel(event_frames) == 1
output_struct = event_frames{:};
return
end
fds = cellfun(@(x)fields(x)',event_frames,'UniformOutput',0);
fds = [fds{:}]; fds = unique... |
34432d5cd0ece9b5fabd4d76abbad2a307709a3d5b3f37bae580153f42c11427 | MATLAB | 769 | 30 | function out = checkForCell(in,variable_type)
if nargin<2
variable_type = 'numeric';
else
if islogical(variable_type) %backward compatibility
if variable_type==true
variable_type = 'logical';
else
variable_type = 'numeric';
end
end
end
if iscell(in)
... |
45869f6281808970e9bfbe269043c9ceb97ca8d3f6839d00a9420f235f43813d | MATLAB | 769 | 24 | function write_param_txt(param_map,ROI,txtfilename,transformscale)
%
% author EML
% write parameter values in txt file for use in COMSOL
if nargin < 4 || isempty(transformscale)
transformscale = 1;
end
idx = find(ROI);
if size(param_map,3) > 1
[Vx,Vy,Vz] = ind2sub(size(param_map),idx);
% forma... |
57f27c2c553caa7664bb342539e3ec6f734c9f79df4d89ff454e8b554542339b | MATLAB | 769 | 31 | function csd = CSD(lfp)
%CSD - Compute current source density.
%
% USAGE
%
% csd = CSD(lfp)
%
% lfp local field potential <a href="matlab:help samples">samples</a>
%
% SEE
%
% See also PlotCSD.
% Copyright (C) 2008-2011 by Michaël Zugaro
%
% This program is free software; you can redistribute it... |
64307ffc407f5bc4b7bc4225533f1af4a691410ecb9606929d0612fbae272b7f | MATLAB | 770 | 27 |
% [Generalized Eigenvalue De-Artifacting Intrument (GEDAI)]
% PolyForm Noncommercial License 1.0.0
% https://polyformproject.org/licenses/noncommercial/1.0.0
%
% Copyright (C) [2025] Tomas Ros & Abele Michela
% NeuroTuning Lab [ https://github.com/neurotuning ]
% Center for Biomedical Imaging
%... |
74db3609934fde5ea01254d960ba049570bce8f552ce866229fe510702ba9517 | MATLAB | 770 | 27 |
% [Generalized Eigenvalue De-Artifacting Intrument (GEDAI)]
% PolyForm Noncommercial License 1.0.0
% https://polyformproject.org/licenses/noncommercial/1.0.0
%
% Copyright (C) [2025] Tomas Ros & Abele Michela
% NeuroTuning Lab [ https://github.com/neurotuning ]
% Center for Biomedical Imaging
%... |
93a65cc17e44979dc506eb09c4397cfc2e2781b19d9648a1a35bc45fbd0a4c65 | MATLAB | 771 | 44 | function BC = createBC1D(meshvar)
% function BC = createBC1D(meshvar)
% Creates a boundary condition structure from a mesh structure
% for a 2D mesh. The boundary conditions on all boundaries are Neumann;
% The index of each boundary condition is defined as:
% 1: Dirichlet
% 2: Neumann
% 3: Mixed
%
% SYNOPSIS:
%
%
% PA... |
d1971a1c093966aa71da6b3629dc768d2b37748394c1db0d4ef907a64feb1d7f | MATLAB | 771 | 28 | function ringRemoval(niinames)
for k = 1:length(niinames),
[pa na ext] = fileparts(niinames{k});
if strcmp(ext,'.nii'),
im = nifti(niinames{k});
for i = 1:size(im.dat,4),
v = double(im.dat(:,:,:,i));
v = ringRm(v,[1 3 10]);
im.dat(:,:,:,i) = v;
... |
e3a1a04fe696728e053e76bafc5f87df9735faebc482e6d5450c7f3e9482b6e6 | MATLAB | 771 | 21 | function candoit = canGetPrecon(problem)
% Checks whether a preconditioner was specified in the problem description.
%
% function candoit = canGetPrecon(problem)
%
% Returns true if a preconditioner was specified, false otherwise. Notice
% that even if this function returns false, it is still possible to call
% getPrec... |
043a80f37d65ac165a74cba8195785b3e9979162fdce89ed950a94b3cf4b8914 | MATLAB | 772 | 29 | %% sepia_read_edit_string(config_txt, str_pattern, action_handle)
%
% Input
% --------------
% config_txt : variable contains config text
% str_pattern : string pattern to be printed after algorParam parameter
% action_handle : handle of the GUI popup
%
% Output
% --------------
% val : (optional) value... |
d40ddf425fb92e4a23b4a51c69e7521f74a5cf774c2372f5f49af3c989767f5f | MATLAB | 772 | 22 | function [m,dm] = meanWarp(mean, g, dg, hyp, x)
% meanWarp - compose a mean function by warping another mean function m0.
%
% m(x) = g( m_0(x) ).
%
% The hyperparameter is:
%
% hyp = [ hyp_m0 ]
%
% This function doesn't actually compute very much on its own, it merely does
% some bookkeeping, and calls other mean func... |
f80dc16e01611961a8d5ec6ae34cf3cea3d3fadff299828e0b60a66f16b2cd74 | MATLAB | 773 | 19 |
%-----------------------------------------------------------------------
function TMSsmooth (imgdir,kernal)
s={} ;
v1=spm_vol(imgdir) ;
for i = 1 : length(v1)
s{i,1} = [imgdir, ',' num2str(i)] ;
end
matlabbatch{1}.spm.spatial.smooth.data = s;
% {
% 'E:\test\Fun... |
22147cb090c6d7dd933d5548d9cfb4809fc0cc9863affd72e1a5a32b1b36b788 | MATLAB | 774 | 27 | function timecp()
% Copy time stamp to a clipboard, for pasting comments inside functions.
% SYNTAX
%[output_arg1,summary]= timmecp() - use 1 if no arguments are allowed
%
% HISTORY
% - 27-Jun-2020 00:33:34 - created by Radek Chrapkiewicz (radekch@stanford.edu)
% - 2020-06-27 00:41:18 Radek - adapted for VIA
ADD_init... |
69642a77095a625bcb6de69dbfb1b9a36aabf90fe2dd4303280d9bb53178d291 | MATLAB | 775 | 27 | function [da_rats, AUC_rats, yint_rats, slp_rats] =...
DelayEffectAcrossRats_stages(ratlist, block, delaybins,...
window, Pstruct, Bstruct, event, Stages)
%Sorts response to SideOff by delay length
%input
%block = behavior block to use
%numbins = number of delay bins
da_rats = cell(length(ratlist), 1);... |
9445589fd433df835a8729ac6f60e0abee12883803a5cfeee89e4fadc5981867 | MATLAB | 775 | 26 | function TMSimgcomp(imgdir,type)
img = dir ([imgdir,filesep,'*.nii']) ;
Header = spm_vol([imgdir,filesep,img(1).name]) ;
[jVol,jXYZ] = spm_read_vols(Header) ;
if type==1 %%represent sum
for i = 2 : length(img)
Header = spm_vol([imgdir,filesep,img(i).name]) ;
[jVol2,jXYZ] = spm_rea... |
ad41babe7d51d6e0e79169db3bc69d36b80a1289351d657e8a2a2f41e7669313 | MATLAB | 775 | 35 | function [sam_out] = sam_detector(hsi_img,tgt_sig,mask)
%
%function [sam_out] = sam_detector(hsi_img,tgt_sig,mask)
%
% Spectral Angle Mapper
%
% inputs:
% hsi_image - n_row x n_col x n_band hyperspectral image
% tgt_sig - target signature (n_band x 1 - column vector)
% mask - binary image limiting detector operation... |
25fdd076d897b12d5b30e2e8df6a66448cb9c3f01c36282ffd0c3362ee3d5532 | MATLAB | 776 | 37 | function [] = test11()
% function test11()
%
% Try out centroid function in Nelder-Mead solver.
%
% This file is part of Manopt: www.manopt.org.
% Original author: Nicolas Boumal, Dec. 30, 2012.
% Contributors:
% Change log:
% Pick the manifold
n = 10;
k = 2;
% M = euclideanfactory(n);
M = o... |
7e62130e4d35b648f684bb17602764c949d5d5dd24b391dc46d6a826440b6b58 | MATLAB | 776 | 38 | function overlaps = bbox_overlap(boxes1,boxes2)
% Copyright (C) 2016 Hakan Bilen.
% All rights reserved.
%
% This file is part of the VLFeat library and is made available under
% the terms of the BSD license (see the COPYING file).
x11 = boxes1(:,1);
y11 = boxes1(:,2);
x12 = boxes1(:,3);
y12 = boxes1(:,4);
x21 = boxes... |
7ff5bf35c83d42c956a33e254029ff77be77fc51dd201f89453d392f68bf6851 | MATLAB | 776 | 26 | function [SCc] = get_consensusSC(SC)
% computes the group-level connectome across multiple structural
% connectivity matrices by setting all edges that are non-zero in more than
% half of the matrices to the average edge across subjects and all other
% edges to zero.
% INPUT
% SC = numSub x 1 cell with NxN struct... |
b470c8b9a8a7dc236ab22f5458f9862b9af759c38ee684c102b08f1c568935f1 | MATLAB | 776 | 20 | function ts = ts2sec(ts)
% convert 10 MHz counts from the patching program (ts) to seconds
% return: timestamps converted to seconds for each sample in the ts
% remove wraparound and convert to seconds starting at time zero
rate = 1e7; % Hz
ts = [0; cumsum(mod(diff(double(ts(:))), 2^32))] / rate;
% Interpolate excl... |
d67e9de5cf985facf47ff7ba35af59ec6c539236cf2ca875953136c0d8aae56c | MATLAB | 776 | 38 | function E = sero_pulseq_trb2pos(tr, b, dz)
% function E = pulseq_trb2pos(tr, b, dz)
% tr = position-wise repetition times in seconds
% b = shot-wise b-values in s/m2 with arbitrary scale
% dz = step distance in meters
if nargin < 1
[~, tr, b] = sero_srr_conventional(0.15,1000,1,50);
dz = 1.5e-3;
spacing ... |
ef8b96d68ca9e684325af037d73740e2a8a213aaea9632c6faf6c0cf98e4e2e6 | MATLAB | 777 | 18 | function n = nspikespertrials(spiketimes, handles, wndw)
%NSPIKESPERTRIALS Counts number or spikes on each trial in a session
% used to determine if neuron is active enough to use for analysis
% returns (n x 1) array with number of spikes, where n = number trials
n = nan(length(handles.start), 1);
%find trial spi... |
0e8ee567f7813b6bcc6de331bdba6f074701b83acb288f57e3b20eadd032566b | MATLAB | 778 | 26 | %% Experiment with the cnn_mnist_fc_bnorm
[net_bn, info_bn] = cnn_mnist(...
'expDir', 'data/mnist-bnorm', 'batchNormalization', true);
[net_fc, info_fc] = cnn_mnist(...
'expDir', 'data/mnist-baseline', 'batchNormalization', false);
figure(1) ; clf ;
subplot(1,2,1) ;
semilogy(info_fc.val.objective', 'o-') ; hold ... |
ddb51bc52a32465243a2352e153e3a4d46c373125452eb5c1dd59e43098fb178 | MATLAB | 778 | 33 | function lineExamples
% % Mixing lines and areas and using different number of points
% % in each group [note that the way notBoxPlot sets the x axis
% % limits can cause problems when combining plots this way]
%
% clf
%
% subplot(1,2,1)
% h=notBoxPlot(randn(10,1)+4,5,'style','line');
% set(h.data,'color','m')
% h=no... |
a5ad00ac930f3718bac82abe924104629fd95e416c7dbb9abf42498a7621ea17 | MATLAB | 779 | 20 | function [hyperstack,metadata] = load_scanimage_data(fullFileNameDir)
% Import the ScanImage Tiff Reader API
import ScanImageTiffReader.ScanImageTiffReader;
% Create the "reader" object
reader = ScanImageTiffReader(fullFileNameDir);
metadata = reader.metadata;
% Get the number of channels
numChannels = numel(get_SI_... |
e25073018d7beca474c33825e8f9287f2b858f53120fabf1270ebb1f32ddbbf0 | MATLAB | 779 | 36 | %% getCiclo(Enunciado)
%
% Regresa los ciclos del Enunciado.
%
% Enunciado = "string"
%
%
%%
function c=getCiclo(e)
if ~ischar(e)
error('MATALAB:getCiclo:InvalidArgument','Se requiere sólo una cadena.')
end
n_c=0; % número de ciclos
v_e=fndVer(e); % vértices del enunciado
for i=1:length(v_e) %-1 % busca... |
29dbfbc539d26e85b9d98644145bb93f6ae3e14d9b01b0714c9b3df814d317c8 | MATLAB | 780 | 30 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% As implemented in: https://github.com/brain-networks/edge-ts/blob/master/main.m
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
clear; clc;
ROI_sig = readmatrix('time_series.txt');
ROI_sig = ROI_sig(:... |
35ec8802e3768c838380b46db05a61a2b8453b1fbf724cf16100db3389bc32e6 | MATLAB | 780 | 31 | % A special function to read Siemens' spectroscopy FIDs.
function complex_fid = dicom_get_spectrum_siemens(fd)
% advance the field to the appropriate place
% in the file
field_length = dicom_move(fd, '7FE1', '1010');
field_size = field_length / 4;
% we can use fread to read data in as floats
[fid, fid_size] = fread... |
5e75b07ccff82c9c817b8fbd7aef27ae4b6261c96527fb55ba2f837502239bf3 | MATLAB | 780 | 33 | function [err, Indx] = AfniXYZ2AfniIndex (XYZ, Nxx, Nyy)
%
% [err, Indx] = AfniXYZ2AfniIndex (XYZ, Nxx, Nyy)
%
% Returns the AFNI index of an AFNI voxel with coordinates XYZ
%
% XYZ : is the XYZ triplets matrix Nx3
% If the data in XYZ is not integers, it will
% be rounded to the nearest integer.
%
% Nxx, Nyy : ... |
b53453ab93216886c1f281ca51224f2e0c8681215598c23ffc06882cc6412126 | MATLAB | 780 | 28 | function plotEC_plotband_2NN(FC, EC_info)
% plotband of effective coinnectivity (e.g. DTF) for different classes
% mean fover subj
% FC = 3D: [t, clz, subj], may inlcude NaNs
% (c) Jiri, Oct23
% plotband subj mean
for clz = 1:size(FC,2)
plotband(EC_info.time, nanmean(FC(:,clz,:),3), sem(FC(:,clz,:),3), EC_info.in... |
f71217b64778db1e34139983bd37575693396561f94ae692b383c492b50dc7db | MATLAB | 781 | 23 | function intpos = interpolateMeshPos(MSH,NT)
% get mesh cell positions interpolating over network edge paths
intpos = zeros(MSH.ncell,NT.dim);
for mc = 1:MSH.ncell
%%
ec = MSH.edgeind(mc,1);
nc = MSH.nodeind(mc);
if (nc>0) % nodal mesh cell
intpos(mc,:) = NT.nodepos(MSH.nodeind(mc),:);
... |
2c2b223149df6202649f04d55427be10e68032306de93bcd307c9cb28dad8fa9 | MATLAB | 782 | 12 | %-----------------------------------------------------------------------
% Job saved on 25-Jul-2014 15:21:23 by cfg_util (rev $Rev: 4972 $)
% spm SPM - SPM12b (5556)
% cfg_basicio BasicIO - Unknown
%-----------------------------------------------------------------------
matlabbatch{1}.spm.spatial.coreg.estimate.ref = '... |
7fd4ad1557e764e5db40ed641746a2bbbb70afc6b36a1afa9ac37951e526dfa2 | MATLAB | 782 | 36 | function [realchi2,chi2p,sig,df,tab,yp] = nonparam_chi2(y,condf,nperms,varargin)
% [realchi2,chi2p,sig,df,tab,yp] = nonparam_chi2(y,condf,nperms,[w])
%
% weights should be mean = 1
if length(varargin) > 0, w=varargin{1}; else w=ones(size(y)); end
[realchi2,df,tmp,tmp,warn,tab,e] = chi2test([y condf],'obs',w);
n = s... |
b5acad13d1ece2cc66a2231a389d872306e54f962f6e089951988e174ae8705d | MATLAB | 782 | 40 | function y = gammpdf(x,a,b)
if nargin < 3,
b = 1;
end
if nargin < 2,
error('Requires at least two input arguments');
end
[errorcode x a b] = distchk(3,x,a,b);
if errorcode > 0
error('Requires non-scalar arguments to match in size.');
end
% Initialize Y to zero.
y = zeros(size(x));
% Return NaN if... |
b79d4be9e2903d6b95b091aae34665467fdfc0cb91c381e9e3a102a1fd628d28 | MATLAB | 782 | 25 | function y=surfing_afni_conjunction(x,dim)
% Computes the conjunction along a dimension
%
% Y=SURFING_AFNI_CONJUNCTION(X,DIM)
% INPUTS:
% X P1xP2x...xPn array
% DIM Dimension along which conjunction is computed
% OUTPUT
% Y Q1xQ2x...xQn array, where Qi=1 if i==DIM and Qi=Pi otherwise
% A non... |
d03b569bbaccd8f9bb6c8839b5b1cec477ebbe6bd2124724dd5ce9ac326e5c1b | MATLAB | 782 | 32 | function [ mff_reader ] = nmri_check_mff_reader( mff )
% [ mff_reader ] = nmri_check_mff_reader( mff )
% Will auto-determine the MFF reader to use
if ~exist(mff,'file')
error('Could not find mff=%s',mff)
end
xmlfile=fullfile(mff,'info.xml');
if ~exist(xmlfile,'file')
error('Could not find info.xml=%s',xmlfile)
en... |
fbf114c4242921c1fc68d8700c55205d2c8012702ded98754c7d11e879b12c59 | MATLAB | 782 | 27 | function value = getfieldi(S,fieldName)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% getfieldi is a case-insensitive version of MATLAB's getfield function.
% It returns value from field from a structure.
%
% Arguments:
% S = Structure from which value of field are requested.
% f... |
3957f63d2ae1ae7f485af7edbe079193b45e0f0240bfa7f006ad8c08ff4fc8d1 | MATLAB | 783 | 57 | function [res, int_part, dec_part] = isint (v)
%
% [res, int_part, dec_part] = isint (v)
%
%Purpose:
% obvious
%
%
%Input Parameters:
%
%
%
%Output Parameters:
% res : 0 it's not an integer
% : 1
%
%
%
%Key Terms:
%
%More Info :
%
% [res, int_part, dec_part] = isint (4.07)
% [res, int_part, dec_part] = ... |
c050621203d964a48d9bb6c445b7ac15c7f4ff626b4074ddf074dda645644536 | MATLAB | 783 | 15 | %{
tune.DotRFMethod (lookup) # options for dot maping.
rf_method : tinyint # method number
---
onset_delay : float # response onset delay in msec
response_duration : float # response window in msec
rf_filter ... |
6391a8d576f3e31c4a527bd144133601d368ef8971697687decf263d261d9900 | MATLAB | 784 | 23 | function fear_relabel_pfcGamma(basename)
load([basename '.basicMetaData.mat'])
fprintf('%s start %s with date of %s\n',datestr(now),mfilename,basicMetaData.SessionName)
load([basename '.pfcGamma.events.mat'])
load([basename '.pfclowGamma.events.mat'])
pfcRipple=pfcGamma(4);
pfcFastGamma=pfcGamma(1);
pfcSlowGamma=pfcL... |
180e3d66925269ac1818208c52c4c0391d01840cf5a16eb7f7d2eec9080eb500 | MATLAB | 785 | 23 | %% Figure 5 S1
YOURDATAPATH = '/Users/hank/Documents/MATLAB/kaufmanlab/data/P1/';
savePath = [YOURDATAPATH '/' 'models' '/'];
%% Load model outputs
% sdeconv
load(sprintf('%sall_regression,M1,angles,sdeconv', savePath), 'outputsM1_sd')
load(sprintf('%sall_regression,S1,angles,sdeconv', savePath), 'outputsS1_sd')
% rad... |
c86530ed50fdc6a06f3c85dd03b87518758065bdd85e23e73c24ca355848db91 | MATLAB | 785 | 23 | % Please cite this paper if you use any component of this software:
% D. Cunefare, L. Fang, R.F. Cooper, A. Dubra, J. Carroll, S. Farsiu, "Open source software for automatic detection of cone photoreceptors in adaptive optics ophthalmoscopy using convolutional neural networks," Scientific Reports, 7, 6620, 2017.
% Re... |
f4d701fe321d773ab617c011414f0591b1ecade9cf7002d7eae3f766f20ddd03 | MATLAB | 785 | 33 | function s=mergestruct(s1,s2)
%
% s=mergestruct(s1,s2)
%
% merge two struct objects into one
%
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2012/12/22
%
% input:
% s1,s2: a struct object, s1 and s2 can not be arrays
%
% output:
% s: the merged struct object. fields in s1 and s2 will be combined in s.
... |
204e35a7e5937df6690f265bf8f1ae11fbf686a14a257463089124afa110aa21 | MATLAB | 787 | 26 | function [m,dm] = meanZero(hyp, x)
%MEANZERO Zero mean function.
%
% Report number of hyperparameters
% s = MEANZERO ()
% s = MEANZERO (hyp)
%
% Evaluation of m(x)
% m = MEANZERO (hyp, x)
%
% Evaluation of function derivatives dm (w.r.t. hyp)
% [m, dm] = MEANZERO (hyp, x)
%
% Call meanFunctions to ge... |
6e7e9edbc52cf9759cc630163141848a54bcd10bfe69952fc73708ff585ccf21 | MATLAB | 787 | 14 | function [ head_degree ] = getHeadDegree( x1, y1, x2, y2 )
%ÀÌÀüÁÂÇ¥¿Í ÀÌÈÄ ÁÂÇ¥¸¦ ±â¹ÝÀ¸·Î ¿òÁ÷ÀÎ ¹æÇâÀÇ °¢µµ¸¦ ±¸ÇÕ´Ï´Ù.
head_radian = atan(...
(y2 - y1)/...
(x2 - x1));
% vector(1,0) À» 0 µµ·Î ±âÁØÀ¸·Î 90µµ±îÁö´Â Á÷°üÀûÀΠǥ½Ã°¡ µÇÁö¸¸ 270~360µµ »çÀÌ´Â ¸¶À̳ʽº °ªÀ¸·Î Ç¥½Ã°¡ µÇ°í
% 90~270±îÁö´Â °ªÀÌ -90~90 »... |
968f33df7d37544db77189f67a67ce4dac090145eec0a91d7f3e5242218a9d4d | MATLAB | 787 | 12 | %% This file specifies the Python environment and Checkpoint of QSMnet+
% qsmnet_dir = '/project/3015069.05/bids/code/QSMnet/';
% dir_net = fullfile(qsmnet_dir,'Checkpoints/');
% Specify LPCNN_HOME corresponding to the code from Github
LPCNN_HOME = '/autofs/space/linen_001/users/kwokshing... |
ab8cb361b1d769f5b1cdc7c6da16f336b86eb925ee7b0170293310a1e300d42b | MATLAB | 787 | 34 | function cellvar = reshapeInternalCell(MS, phi)
% cellvar = reshapeInternalCell(MS, phi)
% this function reshapes a vetorized cell variable to its domain shape
% matrix based on the mesh structure data; it is assumed that the phi
% does NOT include the ghost cell data as well.
%
% SYNOPSIS:
% cellvar = reshapeInterna... |
02f606f71fe2d53972a7f942447e4577d57ab4777f6102903423b7b7d1015d4a | MATLAB | 788 | 21 | function spikes_pertrial = spiketimes_pertrial(spiketimes, handles, wndw)
%SPIKETIMES_PERTRIAL parses spike timings into different trials
%
%output:
%spikes_pertrial:
nt = length(handles.start);
spikes_pertrial = cell(nt,1);
%find trial spikes by searchign range between trial start and end/violation
for j = 1:nt
... |
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