sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
c213ab6ad78a64cc86f2de21cc024d79674b3c1abde72211a90cd531ffaeae70 | MATLAB | 779 | 35 | function acqTag = ea_checkacq(pixdim)
% check image acq tag (iso, ax, cor or sag)
% Input can be the pixdim or the path of the image
if ischar(pixdim)
header = ea_fslhd(pixdim);
pixdim = [header.pixdim1, header.pixdim2, header.pixdim3];
end
if range(pixdim) < 0.05
acqTag = 'iso';
return;
end
[C,~, ic... |
04cee57ba5cd03c553959589029adf256a3aa613e6c44dd92128200cedb448c7 | MATLAB | 780 | 26 | function potential_outliers = canlab_simple_find_outliers(DATA_OBJ, condition_names)
% potential_outliers = canlab_simple_find_outliers(DATA_OBJ)
%
% Get outliers based on mahalanobis distance for each condition and print a short report
%
% e.g., potential_outliers = canlab_simple_find_outliers(DATA_OBJ, DAT.conditions... |
10672b4c756be458d7bd2b0f81f946a669d6e6496f643488f2b4f7980c98ded2 | MATLAB | 780 | 23 | function ea_init_coregctpopup(handles, defaultmethod, handlestring)
% Initialize CT coregistration methods popupmenu.
% Set coregctmethod popupmenu by default
% In checkreg window, we need to set coregmrmethod popupmenu
if ~exist('handlestring','var')
handlestring = 'coregctmethod';
end
% Get functions and names
... |
8a6152694acc3a841a958c78c9a5d4bb5f96b1905c11cf14a6f522fecedc7950 | MATLAB | 780 | 35 | function y = transpose( x )
% Disciplined convex/geometric programming information for TRANSPOSE:
% The transpose operation may be applied to CVX variables without
% restriction.
%
% Determine permutation
%
s = x.size_;
if length( s ) > 2,
error( 'Transpose of an ND array is not defined.' );
end
%
%... |
9667de3d6ed6246d3c754c52b642d804be808a5de1f2da3ce3e19468e411d7c5 | MATLAB | 780 | 30 | function X=ar1noise(n,c,g,a)
% AR1NOISE - Generate zero-mean red noise.
% Syntax: X=ar1noise(n,c,g,a);
%
% Inputs: n - desired length of time series
% c - number of time series to generate
% g - lag-1 autocorrelation
% a - noise innovation variance parameter
%
% Output: X - n by c ma... |
aad41d539974392a866e1d9b1c1dccc17ae4035fc28e8b6074ed8d122787b73b | MATLAB | 781 | 34 | %sz - Show sizes for any number of variables.
%
% USAGE
%
% sz(x,y,...)
%
% x,y,... variables
%
% Copyright (C) 2011-2012 by Michaël Zugaro
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software F... |
bcc2d0f6eb2ca33907c189e7566f5c6ce204f174e81f7cab865245ed0d631f84 | MATLAB | 781 | 26 | classdef ( Hidden, Sealed ) FigureData < event.EventData
%uix.FigureData Event data for FigureChanged on uix.FigureObserver
% Copyright 2014-2015 The MathWorks, Inc.
% $Revision: 1435 $ $Date: 2016-11-17 17:50:34 +0000 (Thu, 17 Nov 2016) $
properties( SetAccess = private )
OldFigure... |
47d0e5b8e3521ebde4a3c8cd31c8f91d8fcc16e89f4751adc6decb44821ac3e4 | MATLAB | 782 | 20 | % List of open inputs
% Apply deformations (many subjects): Deformation Field - cfg_files
% Apply deformations (many subjects): Images - cfg_files
% Written by Nanbo Sun and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
addpath(spm_dir)
disp(deformation_field)
disp(image_path)
nru... |
adc3d6a99211160c859b9a78ff31b57a261e8fa1d98bcc314f93f39ea88965c0 | MATLAB | 782 | 20 | opts = struct();
opts.spm_dir = 'PATH_TO_SPM12';
opts.max_runs_per_task = 1;
opts.echo_preference = [];
opts.vox = [3 3 3];
opts.skip_if_w_exists = true;
opts.write_tsv_confounds = true;
opts.verbose = true;
bids_root = 'PATH_TO_DATASET';
subj_list = {'sub-03','sub-04','sub-05','sub-06','sub-07','sub-08','su... |
bb38122327d1fc97823f1b45129c965e78184399d0743db35fd8b61ac496655f | MATLAB | 782 | 32 | function [n, freqs] = plx_adchan_freqs(filename)
% plx_adchan_freq(filename): read the per-channel frequencies for analog channels from a .plx or .pl2 file
%
% [n, freqs] = plx_adchan_freq(filename)
%
% INPUT:
% filename - if empty string, will use File Open dialog
%
% OUTPUT:
% freqs - array of frequencie... |
e90ce0a7f8913a03b73db451e7d29ceb8e7fec2cf73309fbb24fb895095d665b | MATLAB | 783 | 26 | function Vind=make_left_vertice_list(V,F,nF,Options)
% Make list with all vertices which have not collapsed yet
Vind=unique(F(1:nF,:));
%sortvalue=zeros(size(Vind));
% for i=1:length(Vind)
% % Get Neighbours
% ne=unique(F(any(F(1:nF,:)==Vind(i),2),:));
% Vne= V(ne,:);
%
% dx=repmat(Vne(... |
376abc4b28f8089ec0bd031da98cc4fa3e067040d685b3f5e3aeaceadb988396 | MATLAB | 784 | 36 | load('XYZV');
for save=1:500
for iter=1:2
dat=XYZV;
if iter<2
dat(:,4)=dat(randperm(length(dat)),4);
end
Peuc=squareform(ea_pdist(dat(:,1:3))); % distance matrix
Pval=squareform(ea_pdist(dat(:,4))); % distance matrix
% exp
Peuc(logical(eye(size(Peuc,1))))=1./exp(Peuc(logical(eye(size(Peuc,1))... |
8955c0dfb5e1d24c9b2bcb4f863ed0b28a42a57a3d647f4a833d7ca073b0328f | MATLAB | 784 | 19 | function outlength = cifti_diminfo_length(diminfo)
%recompute length from diminfo contents, in case .length is wrong
switch diminfo.type
case 'dense'
modelends = zeros(length(diminfo.models), 1);
for i = 1:length(diminfo.models)
modelends(i) = diminfo.models{i}.st... |
a9a57db62a7130372efe0ad01c98abe09e44c79ee7cc4747af006e859d1225b2 | MATLAB | 784 | 31 | function ea_fix_runtimepath
% In some installation, MATLAB run-time library path might be missing in
% the environment variable. This function will fix it when needed.
% The path is neccesary to run some binaries.
runtimePath = {fullfile(matlabroot,'bin',ea_getarch)};
if ispc
envname = 'PATH';
else
if ismac
... |
abb66ad8cda102eadf9ec3e075befb4ab820ac713c6f580fab49fbdcaf3c93cb | MATLAB | 785 | 27 | function betas = fit_glm(Y, X, Fs, opts)
%GLMPROC.FIT_GLM AR-IRLS GLM fit for multichannel time series.
% betas = GLMPROC.FIT_GLM(Y, X, Fs, opts)
%
% Inputs
% Y : T×M matrix (time × channels)
% X : T×p design matrix
% Fs : sampling rate (Hz)
% opts : struct with field
% .Pmax... |
b1697b8fa402a030a683001dd5d3baa8411f6e3db0744cc2fbfa77809db35f10 | MATLAB | 785 | 30 | function [xx,yc]=mydftreg_1d(im,refim,parms)
% Usage ... [x,imc]=mydftreg_1d(im,refim,parms)
%
% parms=[scalef smwid]
upscalef=parms(1);
smw=parms(2);
if nargout==0, verbflag=1; else, verbflag=0; end;
if length(parms)==3, verbflag=parms(3); end;
for mm=1:size(im,3),
im1=refim;
im2=im(:,mm);
if smw>... |
26a9dded719e2802442cc3c6b3eaf43fc2c67ef31ca33f1cbe0925e2a3f8eb64 | MATLAB | 786 | 33 | function s=mergestruct(s1,s2)
%
% s=mergestruct(s1,s2)
%
% merge two struct objects into one
%
% authors:Qianqian Fang (q.fang <at> neu.edu)
% date: 2012/12/22
%
% input:
% s1,s2: a struct object, s1 and s2 can not be arrays
%
% output:
% s: the merged struct object. fields in s1 and s2 will be combined in s.... |
83cf6e5f447fcb463313b06de38387eb20ed5230b2e571cb75de7d0f718575cd | MATLAB | 786 | 22 | function tree = move(tree,uida, uidb)
% XMLTREE/MOVE Move (move a subtree inside a tree from A to B)
%
% tree - XMLTree object
% uida - initial position of the subtree
% uidb - parent of the final position of the subtree
%__________________________________________________________________________
%
% Move a subtr... |
f644a0745ec3446f42f4325dc3fcbb7276304e6d3e0e0751179abf7f971a8c0a | MATLAB | 786 | 19 | opts = struct();
opts.spm_dir = 'PATH_TO_SPM12';
opts.max_runs_per_task = 1;
opts.echo_preference = [];
opts.vox = [3 3 3];
opts.skip_if_w_exists = true;
opts.write_tsv_confounds = true;
opts.verbose = true;
bids_root = 'PATH_TO_DATASET';
subj_list = {'sub-01','sub-02','sub-03','sub-04','sub-05','sub-06','su... |
ffb94c6f51177dfbfc0e66731288311d6c5f060fab8f2c7f879468b337639755 | MATLAB | 786 | 31 | function [ PS1_cs ] = subfun_ProfileSimilarity_mri2mri( DataScan , DataScan2 )
%% profile similarity
[N_region, N_layer] = size(DataScan{1});
% delete the layer 1 (it's about 10% of cortical thickness)
Num_Layer1 = max([1 round(N_layer/10)]);
% compute cosine similarity
PS1_cs = [];
for k = 1:numel(DataScan)
% No... |
187dedc1733e64e1e8de917b6994e2e220ed5ac2688f404fe9f812af9e45a10a | MATLAB | 787 | 8 | function W = construct_weights(regular_grid,extended_grid)
xx = [linspace(1/(regular_grid(1)-extended_grid(1)+1),1,regular_grid(1)-extended_grid(1)),ones(1,regular_grid(2)-regular_grid(1)+1),fliplr(linspace(1/(extended_grid(2)-regular_grid(2)+1),1,extended_grid(2)-regular_grid(2)))];
yy = [linspace(1/(regular_grid(3)-... |
dcb0a44f4beb616d0222e0939083730c294a280cba29dcc3fc189adf26e4a5de | MATLAB | 787 | 22 | function GCO_SetLabeling(Handle,Labeling)
% GCO_SetLabeling Sets the current labeling
% GCO_SetLabeling(Handle,Labeling) sets the entire labeling.
GCO_LoadLib();
if (isnumeric(Labeling))
NumSites = gco_matlab('gco_getnumsites',Handle);
NumLabels = gco_matlab('gco_getnumlabels',Handle);
if (... |
d84ee046c5f11ecee82c1689d7c9e7359902dcaa8f367051bb31d81075551528 | MATLAB | 788 | 44 | function im=readlsm(fname,imno,chName)
% Usage ... function im=readlsm(fname,imno,chName)
if nargin<3,
ch_flag=0;
else,
ch_flag=1;
end;
if nargin<2,
imno=1;
end;
if isstr(imno),
found=0; cnt=1; tmpim=0;
while(~found),
tmpstk=tiffread2c(fname,cnt);
if isempty(tmpstk),
found=1;
else,
... |
440737b92d21378bc2ae685dd7f731622646cd94e3c326217c9c545eb5de5345 | MATLAB | 789 | 19 | function errmsg = printf(format,varargin)
%PRINTF Macro to display formatted text.
% PRINTF(FORMAT,A,...) is equivalent to DISP(SPRINTF(FORMAT,A,...)),
% displaying formatted text to the Matlab prompt. Thus, e.g.,
%
% PRINTF('repeat %d.', 1);
% DISP(SPRINTF('repeat %d.', 1));
% ... |
5fdb4e6ade9ee995e404ff6537989aa4cfac7bbd6c589f4d4bbf9c82ac8de9e6 | MATLAB | 789 | 38 | function dreg = register_movie(data, ops, ds)
orig_class = ops.RawPrecision;
% orig_class = class(data);
if ops.useGPU
reset(gpuDevice);
data = gpuArray(single(data));
end
[Ly, Lx, NT] = size(data);
Ny = ifftshift([-fix(Ly/2):ceil(Ly/2)-1]);
Nx = ifftshift([-fix(Lx/2):ceil(Lx/2)-1]);
[Nx,Ny] = meshgrid(Nx,Ny... |
801b0f3c00d5003df2e34203e3af5243702d45a843d16ac4861d12200f11684e | MATLAB | 789 | 40 | function pval = circ_symtest(alpha)
%
% [pval, z] = circ_symtest(alpha,w)
% Tests for symmetry about the median.
% H0: the population is symmetrical around the median
% HA: the population is not symmetrical around the median
%
% Input:
% alpha sample of angles in radians
%
% Output:
% pva... |
b17c854cb8a501b1a753976666cb984bcd3cf05461fdc7d6c7f8c74624f90d5a | MATLAB | 790 | 25 | % SETTINGS
%
% This variable holds all settings for FMAToolbox.
%
% Type 'SETTINGS' to display the default values, or 'edit Settings' to change them.
% Copyright (C) 2004-2009 by Michaël Zugaro
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public Licen... |
6ed20449a94f02cd22da7944ff36862c41e2e53a5558271687153d5c7f30ecee | MATLAB | 791 | 29 | function rawAmplitude_uV = getRawAmplitude(rawWaveforms, peakChan, scalingFactors)
% JF, Get the amplitude of the mean raw waveform for a unit
% ------
% Inputs
% ------
% rawWaveforms: nTimePoints × 1 double vector of the mean raw waveform
% for one unit in mV
% peakChan :
% scalingFactors :
% ------
% Outputs
% -... |
b9f930bc8839f9ba94e0bd7d13fd0d6d33824725f0beab02831bb55391ddde39 | MATLAB | 791 | 37 | function y=twop_imfilt(x,mfp,smp)
% Usage ... y=twop_imfilt(x,mfp,smp)
if ~exist('mfp','var'), mfp=[]; end;
if ~exist('smp','var'), smp=[]; end;
if isempty(mfp), mfp=0; end;
if isempty(smp), smp=0; end;
xdim=size(x);
if length(mfp)==1; mfp=[mfp mfp]; end;
if nargout==0,
if length(xdim)==4, x=x(:,:,:,... |
e4da1054deaf59599317f73d6e02fab889029dd548246f6b4cbf2c6265657e76 | MATLAB | 791 | 26 | %% load allflies from an `img&beh` mat file
thing = [];
count=1;
for f = 1:7
A = allflies([allflies.flyID]==f);
figure;
for a = 1:length(A)
subplot(6,7,a); plot(A(a).flightstates_corr); ylim([-1 9])
title(int2str(a));
end
trial = input('which trial?');
start = inpu... |
ea50c6b7d6133d82fd645c813c7e18a06083e9c6c62e1825dcebf43703d3af54 | MATLAB | 791 | 26 | function info = getinfo(vw)
%INFO=GETINFO(VW)
% Returns a structure whose fields contain information about the opened
% video object. This structure may be flattened to a cell array and used
% with the videoWriter constructor to recreate the current video file.
%
%SEE ALSO
% videoWriter
%
%Copyright (c) 2006 Gera... |
3a9974ca73c7b8c39cd7638ebd20c07fc54ec66ebde0664ed1af15e6dc4de3bd | MATLAB | 792 | 19 | function errmsg = printf(format,varargin)
%PRINTF Macro to display formatted text.
% PRINTF(FORMAT,A,...) is equivalent to DISP(SPRINTF(FORMAT,A,...)),
% displaying formatted text to the Matlab prompt. Thus, e.g.,
%
% PRINTF('repeat %d.', 1);
% DISP(SPRINTF('repeat %d.', 1));
% ... |
bca04beddc8ed8570cabd7387a5c70eb4324e2117fa1c8c05103e4cac419c268 | MATLAB | 792 | 21 | function scoresOUT = updatestages(scoresIN, srate, epochLength)
% Update a sleepstages struct
%%
% Authors: Dan Denis
% Date: 2021-07-14
%%
epochSampleIdx = indexepochs(epochLength * srate, (length(scoresIN.stages) * epochLength) * srate);
epochSecIdx = indexepochs(epochLength, (length(scoresIN.stages) * ... |
f7da7f8e37cda4602d64abafee2dad86727787539cd88431a09a7ec6dec5bb84 | MATLAB | 792 | 30 | function [retval] = fd3(fid)
% [retval] = fd3(fid)
% read a 3 byte integer out of a file
%
% fread3.m
%
% Original Author: Bruce Fischl
% CVS Revision Info:
% $Author: nicks $
% $Date: 2011/03/02 00:04:12 $
% $Revision: 1.3 $
%
% Copyright © 2011 The General Hospital Corporation (Boston, MA) "MGH"
%
% Terms ... |
215e95dafd94e5b02851c51a04690383ac54831b55e2c35c44e81c78e5af3b5c | MATLAB | 793 | 30 | function [newnode,newelem]=removedupnodes(node,elem,tol)
%
% [newnode,newelem]=removedupnodes(node,elem)
%
% removing the duplicated nodes from a mesh
%
% author: Qianqian Fang <fangq at nmr.mgh.harvard.edu>
%
% input:
% elem: integer array with dimensions of NE x 4, each row contains
% the indices of all the... |
bf654c80b48d002367ad1473d278440a1fc9554d54d1eb07f2f1cd40fe494e5a | MATLAB | 793 | 29 | function [m,jsd]=jackknife(x)
% Compute jackknife estimates of the mean and standard deviation of input data x
% Usage: [m,jsd]=jackknife(x)
%
% Inputs:
% x : data in the form samples x trials
%
% Outputs:
% m : estimate of the mean (across trials)
% jsd: jackknife estimate of the standard deviation (across t... |
fd2592f4076abffd5c4bfed07658cb2f736311587baf2ad0ccdc825d3d5ac4ec | MATLAB | 793 | 29 | % Exercise 4.38(b): Linear matrix inequalities with one variable
% From Boyd & Vandenberghe, "Convex Optimization"
% Joëlle Skaf - 09/26/05
%
% Finds the optimal t that would maximize c*t while still having A - t*B
% positive semidefinite by solving the following SDP:
% minimize c*t
% s.t. ... |
1944f5c1c325a49c93dffd434f605ce22dfb169139ed1ecfbc06af7e37fa98b8 | MATLAB | 794 | 8 | function W = construct_weights(regular_grid,extended_grid)
xx = [linspace(1/(regular_grid(1)-extended_grid(1)+1),1,regular_grid(1)-extended_grid(1)),ones(1,regular_grid(2)-regular_grid(1)+1),fliplr(linspace(1/(extended_grid(2)-regular_grid(2)+1),1,extended_grid(2)-regular_grid(2)))];
yy = [linspace(1/(regular_grid(... |
b6ea5ea9d960513ae590e97906a5a274ea2d0ef79fc0eecf9ad686c139cdb67b | MATLAB | 794 | 28 | function T = tree_from_pred(pred)
% TREE_FROM_PRED Convert a predecessor array into a tree
%
% T = tree_from_pred(pred) returns the predecessor array as an
% unweighted adjacency matrix
% pred(i) = 0 if vertex i is a source vertex u,
% pred(i) = 0 if vertex i has no predecessor associated with it, or
% pred(i) ... |
3fe65b6a6ed88f31fbca529d7dfe64a13b9824338cdd0cead9609b65681dd428 | MATLAB | 795 | 34 | function [intersect FV]=CheckMeshInterSections(V,F,nMax,findall)
FV=[];
nF=size(F,1);
if((nargin<3)||isempty(nMax))
nMax=nF-1;
else
nMax=min(nMax,nF-1);
end
if(nargin<4)
findall=false;
end
FV.vertices=V;
intersect=false;
k=1;
for j=1:nMax
O1=V(F(j,1),:); O2=V(F(j,2),:); O3=V(F(j,3),:);... |
93fb95fbb27ea923f86ed654d9d75c7e7885e9cc7f0b6656217494226211c56a | MATLAB | 795 | 40 | function dreg = translate_ROImask(data, ds, ops)
if nargin<3
ops.useGPU = 0;
end
orig_class = class(data);
if ops.useGPU
reset(gpuDevice);
data = gpuArray(single(data));
end
[Ly, Lx, NT] = size(data);
Ny = ifftshift([-fix(Ly/2):ceil(Ly/2)-1]);
Nx = ifftshift([-fix(Lx/2):ceil(Lx/2)-1]);
[Nx,Ny] = meshgrid... |
bf3b6dc582184763c016cd33be62fa15f2b75e6d6d6606e27129a80afee5d28a | MATLAB | 795 | 20 | %% Multi-level kernel density (MKDA) meta-analysis example: Agency database
% The starting point for coordinate-based meta-analysis (CBMA) is a text file
% with the information entered from published studies. In this example, the
% information is contained in the file "Agency_meta_analysis_database.txt"
% It is in th... |
4fdfc03f29dde06a35712dd174d1d8085fc2340a83b2f898fc4aabdc72b35ac1 | MATLAB | 798 | 20 | function ea_gen_models(uipatdirs,typemap,regressor,fdmri,fis)
load([ea_getearoot,'predict',filesep,'models',filesep,'horn2017_AoN',filesep,'modeldata.mat']); % here only needed to get a mask
odir=[fileparts(uipatdirs{1}),filesep,'predictive_model',filesep];
if ~exist(odir,'dir')
mkdir(odir);
end
for pat=0
opa... |
527ccd10c72799dcf378158ee279e78ae0f069b5e3dd0d5dd238e94dfa62152d | MATLAB | 798 | 35 | % makegausslpfir Gaussian LP filter
%
% win = makegausslpfir( Fc, Fs, s )
%
% Fc corner frequency [Hz]
% Fs sampling frequency [Hz]
% s support [SD], minimum 3, default 4
%
% win fir
%
% see also firfilter
% 02-oct-13 ES
function gwin = makegausslpfir( Fc, Fs, s )
nargs = nargin;
if nargs < 1 || ... |
b2f0cfbbf1d520b2a6c37085db9c12e55bfd6ea23eb96711eb32e91a0303d697 | MATLAB | 798 | 37 | function cb = colorbar_range( clim );
%Sets the colour limits for SurfStatView.
%
% Usage: cb = colorbar_range( clim );
%
% clim = [min, max] values of data for colour limits.
%
% cb = handle to new colorbar.
a=get(gcf,'Children');
k=0;
for i=1:length(a)
tag=get(a(i),'Tag');
if strcmp(tag,'Col... |
f9e048848f05d5fe86d8c6239a42d614d575dbe9c9db615de5d0dcd5bdab71bb | MATLAB | 798 | 19 | function ea_prepare_hardi(options,redo)
% build HARDI in new way:
if ~exist([options.root,options.patientname,filesep,options.prefs.HARDI],'file') || redo;
hr=ea_DPS_nifti_to_hardi([options.root,options.patientname,filesep,options.prefs.dti],...
[options.root,options.patientname,filesep,options.pr... |
007358fc65ee9200af803460a0af37474b7cfa76af86f892dc8dc02d13613921 | MATLAB | 799 | 24 | function Mask(input_brain_path)
% Hardcoded mask image path
mask_path = 'data/masks/BrainMask.nii.gz';
% Load the brain image and its header
brain_nii = load_nii(input_brain_path);
brain_image = brain_nii.img;
brain_image(isnan(brain_image)) = 0;
% Load the mask image and its ... |
9d7b5ef33c44c9a6996e700b9fcce7ae55db5f9fe17b588bfca69ac746dc4b97 | MATLAB | 799 | 24 | % sample script to create volumetric mesh from
% multiple levelsets of a binary segmented head image.
%
% Author: Qianqian Fang <fangq at nmr.mgh.harvard.edu>
% load iso2mesh image
img=imread('iso2mesh_bar.tif');
img=fliplr(img);
fullimg=repmat(1-img,[1,1,30]);
fullimg(:,:,31:60)=repmat(ones(size(img)),[1,1,30]);
%... |
e648d44689a93f88750f3d1588cbab649c4edfcfddbd275cb88cf4d6029f6896 | MATLAB | 799 | 28 |
% Create compact overlay and add gray/CSF and mean data
figtitle = 'slices showing coverage';
create_figure(figtitle);
axis off
o2 = canlab_results_fmridisplay([], 'multirow', 2);
o2 = addblobs(o2, region(fmri_data(which('gray_matter_mask_sparse.img'))), 'outline', 'color', 'r', 'wh_montage', [1:2]);
o2 = addblobs(... |
5a2f6b80167c03d31430776521dddccad96af7abbb4f39c16886e80090302f01 | MATLAB | 800 | 37 | function coordinate = mni2cor(mni, T)
% function coordinate = mni2cor(mni, T)
% convert mni coordinate to matrix coordinate
%
% mni: a Nx3 matrix of mni coordinate
% T: (optional) transform matrix
% coordinate is the returned coordinate in matrix
%
% caution: if T is not specified, we use:
% T = ...
% [-4 0 ... |
76401a7e0ff6cc9742cd15ac3062fbb607466a07fe03aa07253a6e3ddbf142c1 | MATLAB | 800 | 28 | function [outR, outID] = makeBayesWeightedCorr1(Pr, bID, varargin)
%function [outR, outID] = makeBayesWeightedCorr1(Pr, bID, preComputedQ (optional))
outID = unique(bID);
h = histc(bID, outID);
if isempty(varargin)
Q = makeQForWeightedCorr(h, size(Pr, 2));
else
Q = varargin{1};
end
outR = zeros(length(outID),... |
8be9a0e9aa7faae13ea6e7200ba01ff8b827fabc146d0ab970288a1c45355153 | MATLAB | 800 | 37 | function varargout = dim(varargin)
% Format
% For getting the value
% dat = dim(obj)
%
% For setting the value
% obj = dim(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: dim.m 1143 2008-02-07 19:33:33Z spm $
if n... |
e9e1d0b02e7b27ee3c531c82fa83e7fadb8025d3809a0b23e37107ce46d7dfd4 | MATLAB | 800 | 33 | function b = padImageOld( a , vpad , hpad )
if ( nargin == 2 )
hpad = vpad;
end
if ( (size(a,1) > (2*vpad)) && (size(a,2) > (2*hpad)) )
u = a(vpad:-1:1,:);
b = a(end:-1:end-vpad+1,:);
l = a(:,hpad:-1:1);
r = a(:,end:-1:end-hpad+1);
ul = a(vpad:-1:1,hpad:-1:1);
ur = a(vpad:-1:1,end:-1:end-hpad+1);
... |
061f3a274969765be6c0fc5463303051c96ac5cdf700418035c79f8e31939c03 | MATLAB | 801 | 24 | function [AllX] = ea_networkmapping_recalcvals_sk(obj,sk)
AllX=obj.results.(ea_conn2connid(obj.connectome)).connval;
td=ea_getleadtempdir;
% get nifti space
switch size(AllX,2)
case 902629 % 222
space=ea_load_nii(fullfile(ea_getearoot,'templates','spacedefinitions','222.nii.gz'));
case 7221032 % 111
... |
2d1b81baf6f9711852f557c0dcaa0a067e8f100ec621808394ae5995054af397 | MATLAB | 801 | 34 | function [transform] = pos2transform(pos, dim)
% POS2TRANSFORM reconstructs a transformation matrix from an ordered list
% of positions.
%
% Use as
% [transform] = pos2transform(pos, dim) where pos is an ordered list of positions
% and should specify a full 3D volume
%
% The output transform is a 4x4 homogenous tr... |
36bd1e3f1595f3c0002dd201211d9d91f8d5d6563cbf5e6faa9a882f442c6429 | MATLAB | 802 | 30 | function beta = CalcReorientAngle(vtheta, moves_indx)
%CALCREORIENTANGLE
% Usage: beta = CalcReorientAngle(vtheta, moves_indx)
%
% This function calculates the reorientation angle, or the change in angle
% of progression after the fly stops. The inputs are the angle of the
% velocity vector, vtheta, and an index ... |
1b73e134b7cd9773568c49216cf1b8d927f8fbf73e6c96a530f30f5236eb09cb | MATLAB | 803 | 26 | function ks = ksstat(x,y)
% ks = ksstat(x,y)
% Computes the two-sample Kolmogorov-Smirnov statistic.
% x & y are two independent groups.
% ks is the maximum of the absolute differences between the two empirical
% cumulative distribution functions (CDF).
%
% No p value is returned.
%
% Based on Rand Wilcox's ks & ecdf R... |
66721deaf2aa324421ed85172382ef2be5db992cb44c103542fec29b673b461f | MATLAB | 803 | 35 | function y = ctranspose( x )
%Disciplined convex/geometric programming information for CTRANSPOSE (.):
% The complex conjugate transpose operation may be applied to CVX
% variables without restriction.
%
% Determine permutation
%
s = x.size_;
if length( s ) > 2,
error( 'Transpose of an ND array is not define... |
96df02f344c114ce99429846166c61ce832233ba72fb6bcae30ea013ece7813a | MATLAB | 803 | 29 | function [seedsurf]=ea_showseedpatch(resultfig,pV,sX,options)
set(0,'CurrentFigure',resultfig)
bb=[1,1,1;size(sX)];
bb=ea_vox2mm(bb,pV.mat);
gv=cell(3,1);
for dim=1:3
gv{dim}=linspace(bb(1,dim),bb(2,dim),size(sX,dim));
end
[X,Y,Z]=meshgrid(gv{1},gv{2},gv{3});
fvs=isosurface(X,Y,Z,permute(sX,[2,1,3]),0.5); % seed... |
ff06e3dfa20c422a542632e2baa5f311e36273df881696ba7cd15478a3d23841 | MATLAB | 803 | 26 | function err=dimacserrors(At,b,c,K,x,y)
%Compute the DIMACS error measures for a given solution in SeDuMi format
%Reload the original coefficients
if ~isfield(K,'f')
K.f=0;
end
s=c-At*sparse(y); %To make s sparse
cx=sum(c.*x); %faster than c'*x
by=sum(b.*y);
xs=sum(x.*s);
normb=norm(b,1);
normc=norm(c,... |
0eebc40ed009bfb77a361aba5a5846ca77976c9ba537b3f49d03ed2ddff6ce13 | MATLAB | 804 | 37 | function y3=volbin(x,bsize)
% Usage y=volbin(x,binsize)
if bsize==1;
y2=x;
if nargout==0, show(y2), clear y2, end;
return;
end
if length(bsize)==1,
bsize=[bsize bsize bsize];
elseif length(bsize)==2,
bsize=[bsize 1];
end;
imdim=size(x);
iend1=floor(imdim(1)/bsize(1))*(bsize(1));
iend2=flo... |
e6e2a1bca38477794bd4fcf046c66284a1823e50ec94544b200e457f0fde1164 | MATLAB | 804 | 38 | function [ts, data] = dacq_inp(fname)
%% Header
fid = fopen(fname,'r','b');
fseek(fid,0,-1);
for i = 1:15
header{i} = fgetl(fid);
end
timebase = str2num(header{10}(10:end-3));
numPackets = str2num(header{15}(17:end));
% "datastart"
for i = 1:10
fread(fid,1,'uint8=>char');
end
dataStart = ftell(fid);
%% Each ... |
57f5b869ce55ae19bdb258a4f4dbf7780cf39b0d0501fadd093a5a5f51fb64fa | MATLAB | 805 | 30 | function [n, samplecounts] = plx_adchan_samplecounts(filename)
% plx_adchan_samplecounts(filename): read the per-channel sample counts for analog channels from a .plx or .pl2 file
%
% [n, samplecounts] = plx_adchan_samplecounts(filename)
%
% INPUT:
% filename - if empty string, will use File Open dialog
%
% O... |
741db91d64bd709a00de32a23350cf9916297dd0c358bbc62055bbb80da9123c | MATLAB | 805 | 30 | function [arc, kymo_cordinate] = line_expand(cspoints, linewidth, arc_grad)
[dC] = diff(cspoints,1,2);
arc = cumsum(sqrt(sum([zeros(2,1) dC].^2,1)));
dC = [dC(:,1) dC];
normC = sqrt(sum(dC.^2,1));
dC = dC./repmat(normC,[2 1]);
if nargin<3
arc_grad = length(arc);
end
arc_cord = linspace(0, floor(max(arc)), arc_gr... |
83358dc1656318007496bf5da2098000d639fe596e570fd2d5485ce49d099140 | MATLAB | 805 | 32 | function k = anglediff(varargin)
% Finds angular difference between two vectors
p = inputParser;
p.addRequired('A',@isnumeric);
p.addOptional('B',NaN,@isnumeric);
p.addParamValue('r',pi,@(x)isnumeric(x)&&((isscalar(x)&&x>0)||(numel(x)==2&&x(2)>x(1))));
if nargin==3&&~any(cellfun(@(x)isequal(x,'r... |
8638c9051dc79a6c72e61f75cb178fb2dda5e6c5448fa315d482f7e1aea3f518 | MATLAB | 807 | 29 | function gw = gridWidth(self,cel)
% Returns the diameter of the grid field
% based on the center peak in the
% spatial autocorrelogram. Width is in PIXELS (divide by 2 to get spatial
% rather than autocorr spatial)
%
% Methods from:
% Anisotropic encoding of three-dimensional space by place cells and grid
% cells. Heym... |
8e5a5258b2a0e8a1ad21535019975debd6396fb059add3ac2a1f9186d3e67b37 | MATLAB | 807 | 36 | function resimg=fillholes3d(img,maxgap)
%
% resimg=fillholes3d(img,maxgap)
%
% close a 3D image with the speicified gap size and then fill the holes
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% img: a 3D binary image
% maxgap: maximum gap size for image closing
%
% output:
% resimg: the image f... |
d271659a378175a53d1f666a7579eb0beaa2ae964b678ee7c5130bf935214da6 | MATLAB | 807 | 26 | function bz_EditAnimalMetadata(basepath)
%% Initial variable parsing
if ~exist('basepath','var')
basepath = cd;
elseif isempty(basepath)
basepath = cd;
end
basename = bz_BasenameFromBasepath(basepath);
%% Value setting - humans must do this. Will be asked to edit a _NoteText.m file
notesname = [basename,'_An... |
4351c5ca98e06cdc97d4f7fc81e65a9576a4a2fc8d70c4162407cb3296044319 | MATLAB | 808 | 32 | function [n,thresholds] = plx_chan_thresholds(filename)
% plx_chan_thresholds(filename): read channel thresholds from a .plx or .pl2 file
%
% [n,thresholds] = plx_chan_thresholds(filename)
%
% INPUT:
% filename - if empty string, will use File Open dialog
%
% OUTPUT:
% thresholds - array of tresholds, expr... |
b595fb476d896593c8c7409b69fb6bfae4c99d55a2f81fbe9215889579a90bf0 | MATLAB | 808 | 22 | function tree = move(tree,uida, uidb)
% XMLTREE/MOVE Move (move a subtree inside a tree from A to B)
%
% tree - XMLTree object
% uida - initial position of the subtree
% uidb - parent of the final position of the subtree
%__________________________________________________________________________
%
% Move... |
7b7b3a89741354dd07417e8074e589f4e931b2a3f4bf67d09764372fdb7ae4e7 | MATLAB | 809 | 34 | function vol=thickenbinvol(vol,layer)
%
% vol=thickenbinvol(vol,layer)
%
% thickening a binary volume by a given pixel width
% this is similar to bwmorph(vol,'thicken',3) except
% this does it in 3d and only does thickening for
% non-zero elements (and hopefully faster)
%
% author: Qianqian Fang, <q.fang at neu.edu>
... |
0103424a249e57b1b231b26865465192dee4143da5c6eab357f6b06847b0babe | MATLAB | 810 | 22 | function y = han(x,frac)
% apply a hamming window to signal x of length x*(1+frac).
% equivalent to zero-padding, windowing and then truncating.
if nargin < 2 || isempty(frac)
frac = 0.5;
end
if isinf(frac);
y = x;
else
sx = size(x);
h1 = hamming(sx(1) ... |
a07b59e498cc274c68bafbd03435bf8b54cda7e5896bcf03a4e3dbc73efca108 | MATLAB | 810 | 22 | function [HbO_thr, HbR_thr, thres_HbO, thres_HbR] = threshold_predictions(meas_HbO, meas_HbR, all_HbO_pred, all_HbR_pred, alpha)
%THRESHOLD_PREDICTIONS t-test across subjects + align with measured masks.
% [HbO_thr, HbR_thr, thres_HbO, thres_HbR] = THRESHOLD_PREDICTIONS(...)
if nargin<5 || isempty(alpha), alpha ... |
f875d3099f2e2271f46bbfcfa2a8728f35c1542af1910b640002cbe8edb7f05b | MATLAB | 810 | 28 | function allROIs = getLogProbsSubpopGMMs(allROIs, metricField, models)
% Computes log probabilities for all neurons under the GMMs for each subpop
% using all GMM components
% Get metrics for all neurons
switch metricField
case 'PCs'
metrics = cat(1, allROIs.PCs);
case 'rotPCs'
metrics = cat(1,... |
41be6d354c613c330fe95b9c3de0741f8380c81e9d27815de3236f3b910e4bc0 | MATLAB | 811 | 29 | function val=getoptkey(key,default,varargin)
%
% val=getoptkey(key,default,opt)
% or
% val=getoptkey(key,default,'key1',val1,'key2',val2, ...)
%
% query the value of a key from a structure or a list of key/value pairs
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% key: a string name for the target str... |
7095094a2896d7cc61b9f50a621f546f90a30188ceaca29b7d475a87b589e654 | MATLAB | 811 | 29 | function [out filenames] = AF_OF_importer(varargin)
% to make a struct (out) of all trial metadata in an experiment
% and their names
% works like this:
% [data, filenames] = rotoball_importer('210619','f3e2','210619','f3e4')
n = 1;
for i = 2:2:length(varargin)
refs(n).date = varargin{i-1};
refs(n).... |
7ef75f20cee8599471a9ceffe05de52744a6530a677c2411eb732cb74efd677d | MATLAB | 811 | 23 | function AUC = quickCV_PLSDA(X, Y, C, opts)
% quickCV_PLSDA Fast tuned cross-validated ROC AUC for PLS-DA.
%
% AUC = quickCV_PLSDA(X, Y, C, opts)
%
% Thin wrapper over quickCV_PLSDA_core with metric 'roc'. Used by the
% permutation, learning-curve and matched-observed stages of
% PLSDA_neuroimaging_pipeline.
%... |
fd472afcc4b2a28a0d1641249d24505812dcea23f8401a2525bec28c30d57db7 | MATLAB | 811 | 30 | %%******************************************************
%% randmat: generate an mxn matrix using matlab's
%% rand or randn functions using state = k.
%%
%%******************************************************
function v = randmat(m,n,k,randtype)
try
s = rng;
rng(k);
if strcmp(randtype,... |
a45917192faa399fd1c851665d39c1190005d1d3999e28c788afea7458fcc671 | MATLAB | 812 | 26 | function cvx_clearpath( arg ) %#ok
%CVX_CLEARPATH Clears the cvx path.
% CVX_CLEARPATH removes the internal cvx directories from Matlab's path. CVX
% does this automatically when a model is completed (i.e., after CVX_END), in
% order to reduce potential naming conflicts with other packages. There is no
% nee... |
54a9a25f6380de3c431d3b1d0e5fa17dec19288c0a4f46b1912bbda19f4286ed | MATLAB | 813 | 23 | function formatFigure(hF, panelWidth, panelHeight, leftOffset, bottomOffset, fontSize)
% Formats a figure to dimensions useful for illustrator figure making
if nargin < 6
fontSize = [];
end
% Figure resize
figureWidth = panelWidth + leftOffset*2;
figureHeight = panelHeight + bottomOffset*2;
set(hF, 'Units', 'inche... |
b912d004e981a769c00921c3a271188143d39e94d70bb416d641ab04485c2c22 | MATLAB | 813 | 28 | function patches = construct_grid_even(grid_size,overlap,dim,min_diff)
N = length(dim);
start_point = cell(N,1);
end_point = cell(N,1);
for i = 1:N
start_point{i} = [1:grid_size(i):dim(i)-grid_size(i)-overlap(i)+1,max(dim(i)-grid_size(i)-overlap(i)+1,1)];
end_point{i} = [grid_size(i)+overlap(i):grid_size(i):d... |
ce3e924150ed8ceff514df2ad60fe0800ea7e0b9c235a78f7ab6a47899bde644 | MATLAB | 813 | 26 | function prob = CBIG_get_prob(gamma_file)
% prob = CBIG_get_prob(gamma_file)
% % Subtracting alpha (optional)
% % From Blei:
% % "we (sometimes) subtract alpha to find a less smooth representation
% % of the topics within each document. if you are looking for an
% % estimate of \theta_{doc} then you don't have to sub... |
d90b2229366906a0aa759b2235f1bc60e975aed6e1cc54a797686433481d122e | MATLAB | 813 | 20 | function [changedstates,ret]=ea_checkfschanges(resultfig,fibersfile,seedfile,targetsfile,thresh,mode)
% small helper function that determines changes in fibertracking results.
ret=1;
ofibersfile=getappdata(resultfig,'fibersfile'); % mode independent
oseedfile=getappdata(resultfig,[mode,'seedfile']);
otargetsfile=getapp... |
dccbb4dc707b24f5105058450eecb4e19df604d816576f9d59b87478c50c5d9c | MATLAB | 813 | 24 | function [cov, metr1_SubVol, metr2_CortThick, metr3_CortSurf] = load_example_data()
%
% Usage:
% [cov, metr1_SubVol, metr2_CortThick, metr3_CortSurf] = load_example_data()
%
% Description:
% Loads the ENIGMA example dataset (from one site - MICA-MNI Montreal;
% author: @saratheriver)
%
% Outputs:
% cov (ta... |
86c9d6436a5ef0b29a5a7802f166cd11a824dcd60d2863120f28c1782c8da109 | MATLAB | 814 | 27 | %%*****************************************************
%% viewgraph: plot the graph of an adjacency matrix.
%%
%% SDPT3: version 3.0
%% Copyright (c) 1997 by
%% K.C. Toh, M.J. Todd, R.H. Tutuncu
%% Last modified: 2 Feb 01
%%*****************************************************
function viewgraph(B);
... |
8919ff3af69d665e7dd4159f797c65f4160ca900e4d8380056a3f214ac649026 | MATLAB | 814 | 28 | % this example demonstrates how to mesh a gray-scale volume directly.
% the data set is a Jacobian matrix obtained by multiplying two
% Green's functions
% see Appendix in Qianqian Fang, Computational methods for microwave medical imaging. Ph.D.
% Dissertation, Dartmouth College, Hanover, NH, U.S.A., Dec 2004.
[xi,yi,... |
8c6c96341c79e7a38428b70370f786949e884853fcb1d327360704202a79d64a | MATLAB | 814 | 31 | %% id - add a unique id to an object
% e.g. to be used as a key
%
% Florian Bernard, Andreas Husch
% Centre Hospitalier de Luxembourg, Dep. of Neurosurgery /
% University of Luxembourg - Luxembourg Centre for Systems Biomedicne
% 2014 - 2017
% mail@andreashusch.de, fbernardpi@gmail.com
classdef id < handle
proper... |
ea254b8e2be4ae45f37738f17705a97e8ca7bc5487e151afe63b6fe027eca5b5 | MATLAB | 814 | 34 | function sOut = keepFields(sIn, keepList)
%KEEPFIELDS Keep only specified fields in a struct.
%
% sOut = KEEPFIELDS(sIn, keepList)
%
% Inputs:
% sIn - Input struct.
% keepList - Cell array of field names to retain in sIn.
%
% Output:
% sOut - Struct containing only the specified fields... |
1cbdf6341d138a962a77ea8c020888b6b7970dd08c1a9861aba1eea51186cfa7 | MATLAB | 815 | 38 | function out = FindDuration(indx);
%FINDDURATION
% Usage: out = FindDuration(indx)
%
% This is a short little function that finds a jump in the indx vector
% and then spits out the number of elements before that jump. It does
% this for all jumps it finds. By a jump, I mean a discontinutity in the
% index. For ex... |
71710d5d3ad04c0286b3db33a5e48f095c0c9f59525eb8fed0f59fc9590b30cb | MATLAB | 816 | 20 | %order coordinates of ellipse along ellipse curve
%IMPORTANT NOTE: will likely only work on smooth ellipses without folds,
%otherwise the problem becomes a nearest neighbor problem like the traveling salesman
%based off of: https://www.mathworks.com/matlabcentral/answers/431568-how-to-effectively-reorder-data
fun... |
9f7f825fe130bc241ea77118cb40d9a0011dfe5eb2aee83afb2be719aa0e1dae | MATLAB | 816 | 29 | function [path,name,ext] = LeG_lastPath(filterspec,dialogtitle)
savedpath = fullfile(fileparts(which('LeG_lastPath.m')),'LeG_lastPath.txt');
startpath = '';
if exist(savedpath,'file')
fid = fopen(savedpath,'r'); %read only
startpath = fscanf(fid,'%s');
fclose(fid);
end
if ~exist(startpath,'dir')... |
8f9c5e78e8a4a993e01412c9de8e65a6786144e35cdb1ade98591f5b130631fd | MATLAB | 817 | 32 | function SD = sd_from_ci(CI_low, CI_high, n)
%SD_FROM_CI Compute standard deviation from a 95% CI around the mean.
%
% SD = SD_FROM_CI(CI_low, CI_high, n)
%
% Inputs:
% CI_low - lower bound of the 95% confidence interval
% CI_high - upper bound of the 95% confidence interval
% n - sample s... |
d5ee7fcbcc0e61a54305106e62e919a49c7e14c436ce9f6efd667dca706ed0e7 | MATLAB | 817 | 25 | function this = read_freesurfer_file(filename)
% Low level reader of FreeSurfer files (ASCII triangle surface file)
% FORMAT this = read_freesurfer_file(filename)
% filename - FreeSurfer file
%
% See http://wideman-one.com/gw/brain/fs/surfacefileformats.htm
%__________________________________________________________... |
dad2f399cb37490f008310461db67c7602b2acedfceca2f3def58f083b1af72b | MATLAB | 817 | 26 | function info = getinfo(vw)
%INFO=GETINFO(VW)
% Returns a structure whose fields contain information about the opened
% video object. This structure may be flattened to a cell array and used
% with the videoWriter constructor to recreate the current video file.
%
%SEE ALSO
% videoWriter
%
%Copyright (c) ... |
e305cdf0253a643c10b3e60aae350b47461c1e9dab4fdb67e24dc62cb648cde4 | MATLAB | 817 | 25 | function allROIs = tSNEallROIsPCA(allROIs, perplex)
% Performs tSNE dimensionality reduction on the z-scored feature matrix,
% then returns the original struct with tSNE space coordinates for each
% cell included
% Note: pass in only valid allROIs, perplexity depends on struct size
if nargin < 2
perplex = length(a... |
0fd1fe055499bbd8df6e9b6146ffec45f0d577ff54a78f45f1476ce52c479430 | MATLAB | 818 | 31 | function AddSpikeTimes(spikes)
%AddSpikeTimes - Add spike timestamps.
%
% USAGE
%
% AddSpikeTimes(spikes)
%
% SEE
%
% See also ThresholdSpikes.
% Copyright (C) 2012 by Michaël Zugaro
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public Licens... |
6d74a96977e7761c83cb7cd0395ecbc64d3fe44d4d9a305b1a84ac6de18bfe41 | MATLAB | 819 | 34 | function [xo yo R] = circle_fit(x,y)
% A function to find the best circle fit (radius and center location) to
% given x,y pairs
%
% Val Schmidt
% Center for Coastal and Ocean Mapping
% University of New Hampshire
% 2012
%
% Arguments:
% x: x coordinates
% y: y coordinates
%
% Output:
% xo: circ... |
7e50170c8b51d10936a6f05ce21271641aac73a1736746d63adc2514ab255a75 | MATLAB | 820 | 34 | % Exercise 5.1d: Sensitivity analysis for a simple QCQP
% Boyd & Vandenberghe, "Convex Optimization"
% Joëlle Skaf - 08/29/05
% (a figure is generated)
%
% Let p_star(u) denote the optimal value of:
% minimize x^2 + 1
% s.t. (x-2)(x-2)<=u
% Finds p_star(u) and plots it versus u.
fprintf(1... |
8ebd9ceeff49015ff1c3f404c5cdb3fe4c777534cd5cb5722fa7601c5ddc1af3 | MATLAB | 820 | 22 | function ea_backuprestore(file)
% Restore file from preprocessing if preprocessing exists.
% Backup file to preprocessing if preprocessing doesn't exist.
% Used mainly for coregistration pipeline.
space_tag = regexp(file, '(?<=space-).+(?=desc)', 'match', 'once');
backup = strrep(file, [filesep 'coregistration' files... |
b901173e6f701145ee33fa7835cf80c62eee733ddbd4891a81b9d4c2b07cce79 | MATLAB | 820 | 26 | function [ spkpos,spk_i ] = spk_pos( vid_ts,pos,spk_ts )
%SPK_POS Finds spike positions
% Finds the spike positions given tracking data in a N-dimensional state
% space
%
% SPKPOS = SPK_POS(VID_TS,POS,SPK_TS);
%
% ARGUMENTS
% * VID_TS: A vector of the timestamps for the state data
% * POS: The position at e... |
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