sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
e82f618db001ff3820890d715a55e961f942e2ca76f728c25bb9b9432b07bcad | MATLAB | 820 | 27 | [fname,pname]=uigetfile('*');
eval(['load ' pname '\' fname]);
params.tapers=[5 9]; params.pad=2; params.Fs=1000; params.fpass=[0 100]; params.trialave=1;
movingwin=[0.5 0.1]; % duration of moving window used to evaluate spectrograms
win=[2 2]; % window around events
fignum=[2 3 6 9 8 7 4 1]; % figure numbers for parti... |
f6dead571ac00e235b93eb4ccdcb8f9d8408addb05fe68381b44023522fc5747 | MATLAB | 820 | 26 | function [ CNRcm ] = subfun_merge_CNRm2CNRcm( data )
CMRcm_fisherz = zeros(size(data{1}));
for k = 1:numel(data)
tmpCNRm = data{k};
row_m = mean(tmpCNRm, 2, 'omitnan');
col_m = mean(tmpCNRm, 1, 'omitnan');
all_m = mean(tmpCNRm(:), 'omitnan');
C0 = tmpCNRm - row_m - col_m + all_m;
row_mean ... |
627dc4ce99236d3dcb8681830d0abb96ab86b282714f67ee880b0a4c79a619e2 | MATLAB | 821 | 38 | function [node,elem]=readsmf(fname)
%
% [node,elem]=readsmf(fname)
%
% read simple model format (SMF)
%
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2007/11/21
%
% input:
% fname: name of the SMF data file
%
% output:
% node: node coordinates of the mesh
% elem: list of elements of the mesh
%
% -- thi... |
b8c89c8426dd46808f62139592bc656508a109b80517e358d3785fd61d79cff2 | MATLAB | 821 | 22 | ccc;
temp = dir("D:\Lab members\XHX\ECOG\MAT Data\pre (granger)\single\**\7-10Freq Active\**\ICA res_*.mat");
idx1 = contains({temp.name}', 'AC');
idx2 = contains({temp.folder}', '\CC\');
paths = arrayfun(@(x) fullfile(x.folder, x.name), temp, "UniformOutput", false);
badChsCC_AC_all = cellfun(@load, paths(idx1 & id... |
cff7b90998a6adc7fb861e54e742063d07ad4e7c05aebc1d676d14c757582977 | MATLAB | 821 | 33 | function signal = loadEGF(f_name, ifScale)
fid = fopen(f_name,'r');
if (fid == -1)
error('Could not open file %s',f_name);
end
for ii = 1:8
textstring = fgetl(fid);
end
fs = sscanf(textstring,'%*s %f');
for ii = 1:2
textstring = fgetl(fid);
end
nosamples = sscanf(te... |
dab63ede5807b7105a4cca3ce285993cff063de25804247baee703d37fcd81ef | MATLAB | 821 | 39 | function [sfile,roilist]=ea_handleseeds(sfile)
% handle seed files
if iscell(sfile) % already supplied in cell format
if length(sfile)>1
roilist=1;
else
[~,~,ext]=fileparts(sfile{1});
if strcmp(ext,'.txt')
roilist=1;
sfile=ea_getrois(sfile{1});
else
... |
426a29abd2c4bbe6d08a7c898e40042a50eacc2fd0b0ddf2d00b1069d96ea488 | MATLAB | 822 | 24 | %% PostStim
%idx=find(tt>=1&tt<2)
tstart=1;
tstop=3;
%load 'StimSM'
rr1a_percentmeansSM=nanmean(all_rr1a_percentSM(tt>=tstart&tt<tstop,:));
rr1a_percentsemSM=nanstd(rr1a_percentmeansSM)/sqrt(size(rr1a_percentmeansSM,2));
%load 'stimAllTrials';
rr1a_percentmeans=nanmean(all_rr1a_percent(tt>=tstart&tt<tstop,:));
rr1a_... |
4e0986ce917af2fa243cbd7865729dd0a84c179811f89ce44f84356b99575db4 | MATLAB | 822 | 16 | function [proj,u,s,v] = pcasvd(data)
%PCASVD Principal Components Analysis via (mean-subtracted) SVD.
% PROJ = PCASVD(DATA), where DATA is an M x N matrix, returns the M x N
% matrix PROJ where the (M,N)th entry is the projection of the Mth row
% of DATA onto the Nth eigenvector of the covariance matri... |
361f275b7fc74eb13ea036dcd4f08f9613432d23ede0842aff7c071599d9538b | MATLAB | 823 | 32 | function dartest
% pull out rr1 and SEM and make plot from all files
%20190812
names={
'TSer4772_res.mat'
'Tser4773_res.mat'
}
vessel{1} = 1;
vessel{2} = 2 4 5;
vessel{3} = 1 2 3 4;
all_rr1a=[];
all_rr1nSEM=[];
for ii = 1:length(names)
load(names{ii})
all_rr1a = [all_rr1a rr1a_percent];
all... |
93e3999a186cf41dec26692975cae63b6b6396f39d4d3b61e3c8ba589cba53b8 | MATLAB | 823 | 28 | function p = gaussian_prob(x, m, C, use_log)
% GAUSSIAN_PROB Evaluate a multivariate Gaussian density.
% p = gaussian_prob(X, m, C)
% p(i) = N(X(:,i), m, C) where C = covariance matrix and each COLUMN of x is a datavector
% p = gaussian_prob(X, m, C, 1) returns log N(X(:,i), m, C) (to prevents underflow).
%
% If X has... |
ae3664f97f9f13d15ba85da824d0a4355033503c5074db0129025b6b49e16cf8 | MATLAB | 823 | 44 | function ClusterNum = PermClusterInfo(PvalpermV0001Ct)
for i = 1:length(PvalpermV0001Ct)
Pvaltemps(i,1:length(PvalpermV0001Ct{i})) = PvalpermV0001Ct{i};
end
AAA = Pvaltemps(Pvaltemps>0);
BBB = unique(AAA);
if isempty(BBB)
ClusterNum = NaN;
else
for i = 1:length(BBB)
noaaa(i) = length(find(AAA==BBB(i)));
end... |
0dfeb01fec54a101c0be3ac7b8384c68edd9de1deab0860da09b26ee22bc63fb | MATLAB | 824 | 31 | function eid=getintersecttri(tmppath)
%
% eid=getintersecttri(tmppath)
%
% get the IDs of self-intersecting elements from tetgen
% call this when tetgen complains about self-intersection
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% tmppath: working dir, use mwpath('') in most cases
%
% output:
% eid:... |
8341f6ac4e5a21080093f27e4e37ce7904055669fd26c88048f2d8d315819983 | MATLAB | 824 | 32 | %int2zstr - Convert integer to zero-padded string.
%
% USAGE
%
% s = int2zstr(n,digits)
%
% n integer to convert
% digits optional total number of digits
%
% Copyright (C) 2012 by Michaël Zugaro
%
% This program is free software; you can redistribute it and/or modify
% it under the terms... |
d8961baed2f094606f73be1f3d951b1e2408be6040eb3540348eedbd6ab181fd | MATLAB | 824 | 24 | function y = pow_abs( x, p )
%POW_POS Power of absolute value.
% POW_POS(X,P) = ABS(X).^P.
% P must be real and greater than or equal to one.
%
% Disciplined convex programming information:
% POW_ABS(X,P) is convex and nonmonotonic, so X must be affine.
% P must be constant, and its elements must ... |
f988b2d0380404be0e404d876c87babc93bb18a88e7e054036c635748980395d | MATLAB | 824 | 37 | function y=myaffine2d_m(im1,x0,y0,r0,sx0,sy0,type,imsize,mask)
% Usage ... y=myaffine2d_m(im1,x0,y0,r0,sx0,sy0,type,imsize,mask)
r0=r0*(pi/180);
[nx,ny,nz,nt]=size(im1);
[ii,jj,kk,ll]=ndgrid([1:nx],[1:ny],[1:nz],[1:nt]);
% rotation matrix
rmat=eye(4);
rmat(1,1)=cos(zrot);
rmat(2,2)=cos(zrot);
rmat(1,... |
e9d30be17fc50c6e22cbc6238ba0b4376bdfe32db59be88e1f220f66d5662ca4 | MATLAB | 830 | 27 | function [isPopInfo] = bz_isPopInfo(PopInfo)
% USAGE
% [] = bz_isPopInfo(spikes)
%
% INPUT
% PopInfo - struct with the following fields
% .UID
% .sessionName
% .region
%
% OUTPUT
% logical true if struct meets PopInfo criteria, false if otherwise
%
% wr... |
1c4886280b1572e7a3db529fd81f883df886a1c494087088587a6ad45462749f | MATLAB | 831 | 35 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% demo script to insert new nodes to a tetrahedral mesh
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
load rat_head.mat
[node,elem,face]=vol2mesh(volimage>0.05,1:size(volimage,1),1:size(volimage,2),...
... |
5f4a7e42a814b532277ffa3ebf737fd80670d7cca8fa1924d441ad571b38a025 | MATLAB | 831 | 22 | function obj=geom_abline(obj,varargin)
% geom_abline Display y=ax+b reference lines in each facet
%
% Example syntax: gramm_object.geom_abline('slope',1,'intercept',0,'style','k--')
% 'slope' and 'intercept' can be 1D arrays of the same size in
% order to draw multiple lines. In that case, 'style' can
% either be a sin... |
88e84c69f2a2092bb93c6b8c65dbfc466e9582de417b923ad24335ce79266e0a | MATLAB | 831 | 22 | function y = han(x,frac)
% apply a hamming window to signal x of length x*(1+frac).
% equivalent to zero-padding, windowing and then truncating.
if nargin < 2 || isempty(frac)
frac = 0.5;
end
if isinf(frac);
y = x;
else
sx = size(x);
h1 = ha... |
8f3e52e960ebe40e0c7b201c02e4ccb38e02fb0a60db49aa2c3caee0f66d6049 | MATLAB | 831 | 37 | function facecell=finddisconnsurf(f)
%
% facecell=finddisconnsurf(f)
%
% subroutine to extract disconnected surfaces from a
% cluster of surfaces
%
% author: Qianqian Fang (fangq@nmr.mgh.harvard.edu)
% Date: 2008/03/06
%
% input:
% f: faces defined by node indices for all surface triangles
%
% output:
% fac... |
b307c3c03a7debbb07d2b17eafc8d2effd0782b3cd2133cde93a68808b265f13 | MATLAB | 831 | 30 | function beta = CalcReorientAngle(vtheta, moves_indx)
%CALCREORIENTANGLE
% Usage: beta = CalcReorientAngle(vtheta, moves_indx)
%
% This function calculates the reorientation angle, or the change in angle
% of progression after the fly stops. The inputs are the angle of the
% velocity vector, vtheta, and an... |
472c017542959892b8a6754d2d36bc28626d7f3ab74987b413d915d8008c3a98 | MATLAB | 832 | 31 | function [result] = verify_mexplex(mexPlexData, dataDir)
result = 1;
for i=1:length(mexPlexData.plxs)
plx = mexPlexData.plxs{i};
fpath = fullfile(dataDir, plx.FileName);
plxnew = get_all_from_plx(fpath);
[r1 r2 er] = comp_struct(plx, plxnew,'old','new');
if(max(size(er)) > 0) result = 0; e... |
489083531b2447c4e5ab82c88180c590e518bf49f7a833d18178f60e42d35c26 | MATLAB | 832 | 22 | function obj2 = unitaryopp(f, obj1, varargin);
% make new memory mapped data file (blank)
% ----------------------------------------
newFileName = mmo.getnewfilename;
data = memmapfile(obj1.dataFile, 'writable', obj1.writable, 'format', { 'single' obj1.dimensions 'x' });
fid = fopen(newFileName, 'w... |
3d376d9d02f514c514c690e4e371930f3b119657f3c447c3c1f416a03e7df097 | MATLAB | 833 | 27 | function movF = MovGaussFilter_v2(mov, G, subsample, workingclass, useGPU, handles)
movF = zeros([size(mov, 1), size(mov, 2), length(1:subsample:size(mov,3))], workingclass);
k = 1;
if useGPU
gpudev = gpuDevice(1);
reset(gpudev)
Mem_max = gpudev.AvailableMemory;
batchsize = min(floor(Mem_max*0.8/handles... |
92336c54e48008a3beaea2da8bea36a6cca60bfbf67bdb9efda4fef9b67fb06d | MATLAB | 833 | 35 | function CBIG_MMLDA_generate_MingHotColormap
% Written by Xiuming Zhang and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
% create R G B for color table
no_bins = 255*3;
R = zeros(no_bins, 1);
R(1:255) = 1:255;
R(256:end) = 255;
G = zeros(no_bins, 1);
G(256:510) = 1:255;
G(511:e... |
1445c50a25d761d479f8879220a34a8077a757cf192d47b6952780c3699fb459 | MATLAB | 834 | 29 | function [ imcollage , labels ] = createcollage( ims , nx , ny , nimsx , nimsy , gapx , gapy )
% ims is a K x W array, where ims( k,w ) has the intensity of pixel w of
% image k
nims = size( ims , 1 );
if (nims > nimsx*nimsy)
warning( 'Not all images fit in this collage' );
end
nxtotal = nimsx * (nx ... |
2b0ca599c67a2b8d7e7f87826536445bbafcd300a3fa5c642d17cb87a443a2a7 | MATLAB | 834 | 24 | function x = buncompress( xR, x, sx )
narginchk(2,3);
if ~isa( xR, 'double' ) && ~isa( xR, 'sparse' ),
error( 'First argument must be a structure matrix.' );
elseif size( x.basis_, 2 ) ~= size( xR, 1 ),
error( 'Structure matrix incompatible with vector.' );
elseif nargin < 3 || isempty( sx ),
sx = ... |
4faf23b59f8a9353d91850a1ea193ab4a566e50f1d99afea08157f40463d9fee | MATLAB | 834 | 31 | % Section 4.3.1: Compute the Chebyshev center of a polyhedron
% Boyd & Vandenberghe "Convex Optimization"
% Joëlle Skaf - 08/16/05
%
% The goal is to find the largest Euclidean ball (i.e. its center and
% radius) that lies in a polyhedron described by linear inequalites in this
% fashion: P = {x : a_i'*x <= b_i, i=1,..... |
cee406cf62ba6c32248837e2a26361955162230104a1d09105916df4fc114f36 | MATLAB | 834 | 25 |
function [p]=SetALFAanalysisParameters()
%% set analysis parameters
% set DBSCAN parameters for identifying signals from the same channel
p.MaxDistProtamers = 8;%e-9;
p.MinNumProtamers = 2;
% set DBSCAN parameters for identifying PIEZO channel clusters
p.MaxDistWithinCluster = 65;%;e-9;
p.MinNumChannelsPerCluster = ... |
ffe8978239caf2edbff083c05805128ac496479baf6af0c1ebb4391126ad23c5 | MATLAB | 835 | 25 | count = 1;
figure;
for type = 6:10
A = allflies([allflies.trtype]==type);
answer = [];
for i = 1:length(A)
data = A(i).gaussianfluor(:,1:8);
[m, ind] = max(data(44,:));
% alignedL = circshift(data',4-ind);
alignedL = circshift(data(44,:),4-ind);
data = A(i... |
23f8866115fa167413e5474c9d65aa5576be4b50a00522c5d46f7509cbd79d5b | MATLAB | 836 | 29 | %% plotSphere - plot a sphere for given point
%
% Andreas Husch
% Centre Hospitalier de Luxembourg, Dep. of Neurosurgery /
% University of Luxembourg - Luxembourg Centre for Systems Biomedicine
% 2014 - 2017
% mail@andreashusch.de, husch.andreas@chl.lu
function graphicsHandle = plotSphere(point, diameter, color, parent... |
ba140b5fb2303f71c543dac0c6ce5e51b901721602326f28ea37ea5e9f0af192 | MATLAB | 836 | 33 | function y_line=runline(y,n,dn)
% Running line fit (local linear regression)
%
% Usage: y_line=runline(y,n,dn);
%
% Inputs:
% y: input 1-d time series (real)
% n: length of running window in samples
% dn: stepsize of window in samples
%
% Outputs:
% y_line: local line fit to data
y=y(:);
nt=length(y);
y_line=zeros(nt... |
e248dbb28778b1464b5260cf7713e942f7f4eb3b423142d239cf9d1904ba0935 | MATLAB | 836 | 30 | function res = prunePTResult_(res, saveSinglePerm)
% Remove unnecessary large fields from mu_granger_wavelet_pt output.
removeFields = ["dGC_obs_full", "resSTD", "resDEV", "opts"];
for i = 1:numel(removeFields)
fn = removeFields(i);
if isfield(res, fn)
res = rmfield(res, fn);
... |
59b2cd0ccfc47b29ac6735f04894b152fda0c16faa6c490ce037a7322cb299e8 | MATLAB | 837 | 34 | function y_line=runline(y,n,dn)
% Running line fit (local linear regression)
%
% Usage: y_line=runline(y,n,dn);
%
% Inputs:
% y: input 1-d time series (real)
% n: length of running window in samples
% dn: stepsize of window in samples
%
% Outputs:
% y_line: local line fit to data
y=y(:);
nt=length(y);
y_line=zeros(n... |
d3a723093d6a94944724708050a07a7321db78aae99e752f66c9dad0dd5b8936 | MATLAB | 837 | 25 |
function [p]=SetALFAanalysisParameters_V2()
%% set analysis parameters
% set DBSCAN parameters for identifying signals from the same channel
p.MaxDistProtamers = 8;%e-9;
p.MinNumProtamers = 2;
% set DBSCAN parameters for identifying PIEZO channel clusters
p.MaxDistWithinCluster = 65;%;e-9;
p.MinNumChannelsPerCluster... |
0a6c1e3bf978fe7bc8454a653c1d4955878f2ffc9318a7d3772b7f7314cb5360 | MATLAB | 840 | 21 | function ans=erfi(x)
% %erfi(x). The Imaginary error function, as it is defined in Mathematica
% %erfi(z)==erf(iz)/i (z could be complex) using
% %the incomplete gamma function in matlab: gammainc
% %Using "@": erfi = @(x) real(-sqrt(-1).*sign(x).*gammainc(-x.^2,1/2))
% %Note: limit(x->0) erfi(x)/x -> 2/sqrt(pi)
... |
16c7d84302e769bcbc7da0b1dad1e654e2e7c2054fccb8d33a378f930bee01de | MATLAB | 840 | 27 | function [errCode] = ddt_write_v(filename, nch, npoints, freq, d)
% ddt_write_v(filename, nch, npoints, freq, d) Write data to a .ddt file
%
% [errCode] = ddt_write_v(filename, nch, npoints, freq, d)
%
% INPUT:
% filename - if empty string, will use File Open dialog
% nch - number of channels
% npoints... |
87582f565540ea6194293bb04a966d8ee11e70fc52f3a70d358731720b6fd9da | MATLAB | 840 | 28 | function patches = construct_grid_even(grid_size,overlap,dim,min_diff)
N = length(dim);
start_point = cell(N,1);
end_point = cell(N,1);
for i = 1:N
start_point{i} = [1:grid_size(i):dim(i)-grid_size(i)-overlap(i)+1,max(dim(i)-grid_size(i)-overlap(i)+1,1)];
end_point{i} = [grid_size(i)+overlap(i):grid_s... |
a379ae81175f997c0df875463565489d8a9a393ab9c08b5a2901bc7500da0acf | MATLAB | 840 | 17 | % stitching single ROI over multiple trials
% order doesn't matter! just need ROI's 3% lowest intensity values
% why do this over just taking the max?
% it really might not work because the ROIs are not equally active even
% throughout an entire session with a fly
% so an ROI that remains very dim throughout sho... |
3b76b80e4bef556c9bec683cd723bd57720b0bf02277d1dd724550ef8156ead8 | MATLAB | 841 | 35 | function handles = dan_adjust_channel(handles)
%%
% Authors: Dan Denis
% Date: 2021-07-14
%%
% Add and/or remove channel filters and references
montage = handles.montage;
chanProp = inputdlg({'Channel name', 'Channel type', 'New reference', 'Lower edge', 'Higher edge', 'Add notch'}, 'Channel property editor');
... |
e7e2a848a54252076d4bd8f0d675be425ab77ae8ba152628dd3ce5c8d88909ca | MATLAB | 841 | 37 | function ROIxyCoord = mask2polyCoord(mask)
%takes binary image mask of shape imgWidth X imgHeight of type logical for
%a given ROI and outputs the coordinates of the ROI outline in ROIxyCoord
%Row1: x; Row2: y
[r,c] = ind2sub(size(mask),find(mask));
[uC,~,ibC] = unique(c);
[xC,yC] = deal(zeros(1,length(uC)));... |
13de1e7790aa2933933655bd749566bfb2cbb65d10903c24bca45011325efbba | MATLAB | 842 | 25 | function this = read_freesurfer_file(filename)
% Low level reader of FreeSurfer files (ASCII triangle surface file)
% FORMAT this = read_freesurfer_file(filename)
% filename - FreeSurfer file
%
% See http://wideman-one.com/gw/brain/fs/surfacefileformats.htm
%____________________________________________________... |
65b29a692ae712239429feddf8f6595d65a41fcccd4f1f6b9130df4b5c6dd21f | MATLAB | 842 | 23 | function [reconst, el_model_right, el_model_left, sides] = ea_get_reconstruction(reconstruction_file_path)
try
reconst = load(reconstruction_file_path);
catch
ea_warndlg('The reconstruction file was not found')
return
end
if length(reconst.reco.props) == 2
sides = [... |
1b413cfcd4ce6ee1970c15e5c31549ff18267bf55f1e705e6eb94b9ef3520fa8 | MATLAB | 843 | 24 | function ea_Tmap(varargin)
% creates a simple weighted T-map.
% ea_Tmap(fis,regressor,outputname,mask,sk) % sk can be 'k','s','sk'
% for smoothing and normalization options. Mask only necessary if
% choosing 'k' option.
regressor=varargin{2};
output=varargin{3};
[X,n]=ea_genX(varar... |
42601d2a9622de97598d58601a357f86b50a4ac144450a1388260859c492a241 | MATLAB | 843 | 34 | function [ OutTable ] = subfun_write_to_MapPlot_byR( MapData , DataLabel , atlasInfo , SaveName )
label = {};
score = -100*ones(size(atlasInfo,1),1);
score(DataLabel) = MapData;
for i = 1:size(atlasInfo,1)
if atlasInfo.LR{i} == 'L'
prefix = 'lh_L_';
else
prefix = 'rh_R_';
end
switch atl... |
77b0b99020e65adc532cb6af205893c8bbbf87c5a3681dedec941684dc3a7892 | MATLAB | 843 | 31 | function normpower = tfrnorm(rawpower, baseline, method)
% Normaliise time-frequency power using one of the following methods:
%
% db = Decibel normalisation
% pct = Percent change
% div = Divide by baseline
% z = z-score
%
%
% Required inputs:
%
% rawpower: frequency x times matrix
% baseline: Indices for baseline per... |
9b1ae8a62c5ddb938047c4a17addb0adf75200a820464375881c5933023c50e1 | MATLAB | 843 | 31 | %GetNextItem - Get next item from a Batch object (iterator mode).
%
% This is a helper class to easily read and parse batch files.
%
% USAGE
%
% [b,item] = GetNextItem(b);
%
% b batch object
% Copyright (C) 2007 by Michaël Zugaro
%
% This program is free software; you can redistribute it and/or mod... |
76638549c47fc58b70d5fe768fd6dd758f59af374052d1b1077d85b210117077 | MATLAB | 844 | 26 | function dend_shaft = shaftloc(dend_shaft, dendriteROI)
for i = 1:length(dendriteROI)
if ~isempty(dendriteROI(i).dend_line)
dend_line = dendriteROI(i).dend_line;
dC = diff(dend_line,1,1);
arc = cumsum(sqrt(sum([zeros(1,2); dC].^2,2)));
dendriteROI(i).arc = arc;
end
end
for k = 1... |
d673da6d30ce4a919efdc743a637b298b8f573ed8712b28752c4305f1352ec92 | MATLAB | 844 | 31 | function M = Q2M(Q)
% Generate a rotation matrix from a quaternion xi+yj+zk+w,
% where Q = [x y z], and w = 1-x^2-y^2-z^2.
% See: http://skal.planet-d.net/demo/matrixfaq.htm
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: Q2... |
fdb694c58993c11954df4554bdab9e991b577a0d47007f16b585ccf63cac30bb | MATLAB | 844 | 24 | function y = sum_square_abs( x, dim )
%SUM_SQUARE_ABS Sum of the squares of absolute values.
% For real arrays, SUM_SQUARE_ABS(X) computes the same result as
% SUM_SQUARE(X). For complex arrays, SUM_SQUARE(X) first computes the
% magnitudes of the elements of X, so it compute SUM_SQUARE_ABS(X).
%
% Similarly... |
b1c5aceb3d5c64ee8182ca5c2d417be36813f17fe0fd879277ce409dbafc633c | MATLAB | 845 | 26 | function ea_denoise_mri(input,output,sigma)
basedir = [fileparts(mfilename('fullpath')), filesep];
ea_dispt(['Denoising: ',input]);
UNLM = ea_getExec([basedir, 'UnbiasedNonLocalMeans'], escapePath = 1);
if ~exist('sigma','var')
sigma=5;
end
cmd=[UNLM,' --sigma ',num2str(sigma),' ',ea_path_helper(input),' ',ea_p... |
5e2c5734e791bfc88f51970f256f057d11961e5806deb6360f19fe107769b00f | MATLAB | 846 | 33 | %COPYFIG Create a copy of a figure, without changing the figure
%
% Examples:
% fh_new = copyfig(fh_old)
%
% This function will create a copy of a figure, but not change the figure,
% as copyobj sometimes does, e.g. by changing legends.
%
% IN:
% fh_old - The handle of the figure to be copied. Default: gc... |
ba36bd1ece0cd15f741010d2d0a8c5293ece4fab71b9e6cf1bf77dab0971a93e | MATLAB | 846 | 25 | function fina=ea_dosk(fina,mask)
[pth,fn,ext]=fileparts(fina);
nii=ea_load_nii(fina);
nii.img(~mask)=nan;
nii.img(mask)=ea_normal(nii.img(mask));
nii.fname=fullfile(pth,['k',fn,ext]);
ea_write_nii(nii);
matlabbatch{1}.spm.spatial.smooth.data = {[fullfile(pth,['k',fn]),'.nii,1']};
matlabbatch{1}.spm.spatial.smooth.fwhm ... |
ce8df601c535ea4e2e7a819c0ea2f9e45bd26dcd083adc5f49e2f6b0353845a8 | MATLAB | 846 | 31 | function CBIG_ASDf_plotLoglike(inputDir, k, r)
% CBIG_ASDf_plotLoglike(inputDir, k, r)
%
% This function plots the "climbing" of the log-likelihood. If the model
% has converged, the plot should go flat.
%
% Input:
% - inputDir:
% Absolute path to the input directory where the model estimation
% ... |
dbcb0a2bdd2ac4886536cbfc23238af13a99573595f05747160e6ab13e475749 | MATLAB | 846 | 33 | function [isSession, path] = bz_isSession(varargin)
% USAGE
% [isSession] = bz_isSession(event)
%
% checks that the path is a recording session
%
% INPUT
%
%
% OUTPUT
%
%
% written by david tingley, 2017
if nargin == 0
path = pwd;
else
path = varargin{1};
end
pathSplit = strsplit(path,'/');
sessi... |
ffe3ad9f0c6f48f2e864703af9748011f8914c62e7fb65e74721682aba8bb7e0 | MATLAB | 846 | 35 | function root = AlignSpike2LFP(root)
% Aligns Spike times to the LFP frames. Populates root.Spike(n,m).i_lfp
%
% For every root.b_lfp, aligns root.b_lfp.ts to spike times for all cells
% in root.spike.ts.
%
% root = root.AlignSpike2LFP
import CMBHOME.Utils.*
root.cell_thresh = 0;
if isempty(root.b_lfp)
disp... |
203a66316ee6cdac41fb566b877a21b048757e8e8fedc8e13f27f6a76956ccf4 | MATLAB | 847 | 26 | function ea_init_normpopup(handles, defaultmethod, handlestring)
% Initialize normalization methods popupmenu.
% Set normmethod popupmenu by default
% In checkreg window, we need to set coregmrmethod popupmenu
if ~exist('handlestring','var')
handlestring = 'normmethod';
end
% Get functions and names
funcs = ea_re... |
4861b267204751ec8cbfeef7ca5e8b646d39c3810cab3fe2968af7b82e7d0e38 | MATLAB | 847 | 31 | function snorm=surfacenorm(node,face,varargin)
%
% snorm=surfacenorm(node,face)
% or
% snorm=surfacenorm(node,face,'Normalize',0)
%
% compute the normal vectors for a triangular surface
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% node: a list of node coordinates (nn x 3)
% face: a surface mesh tr... |
b87b521642abae246fabfacab0020b30fad9d07529085c450ba3879e6e37fc79 | MATLAB | 847 | 42 | function [Atout,ttout] = DSBOfnRK4(Ai0,t_ini,t_final,t_step,QAi,etaAi,eta,ntout)
%
nt = floor((t_final-t_ini)/t_step);
ni = length(Ai0);
Ait = zeros(ni,nt);
ttime = zeros(1,nt);
% initialization
tt = t_ini;
Ai_old = Ai0;
jj = 1;
Ait(:,jj) = Ai_old;
ttime(jj) = tt;
while (tt<=t_final)
% Runge Kutta 4
[Ai_K... |
c17d62c8ae60844db399e1980f54a48dddce640152bb9a1c81058574f4dd2156 | MATLAB | 847 | 35 | function [R,s]=rotmat2vec(u,v)
%
% [R,s]=rotmat2vec(u,v)
%
% the rotation matrix from vector u to v, satisfying R*u*s=v
%
% author: Bruno Luong
% URL:http://www.mathworks.com/matlabcentral/newsreader/view_original/827969
%
% input:
% u: a 3D vector in the source coordinate system;
% v: a 3D vector in the target co... |
fee29043fac9a87221e9d394cf294efe3342de0895258053aa0c832385699084 | MATLAB | 847 | 27 | [fname,pname]=uigetfile('*');
eval(['load ' pname '\' fname]);
params.tapers=[5 9]; params.pad=2; params.Fs=1000; params.fpass=[0 100]; params.trialave=1;
movingwin=[0.5 0.1]; % duration of moving window used to evaluate spectrograms
win=[2 2]; % window around events
fignum=[2 3 6 9 8 7 4 1]; % figure numbers for ... |
6a7c548925a31f824847c702ffc25d8a78926f768f14c4d2374a84e99841959e | MATLAB | 848 | 26 | function [iscellinfo] = bz_isCellInfo(cellinfo)
% USAGE
% [] = bz_isCellInfo(spikes)
%
% INPUT
% cellinfo - struct with the following fields
% .UID
% .sessionName
% .region
%
% OUTPUT
% logical true if struct meets cellinfo criteria, false if otherwise
... |
692b912497dd41a987c2c659a23ee18cfd1d4d2931659ea85c309d5191c52cee | MATLAB | 849 | 30 | function stampsel = prepStampRespPlot(handles)
scrsz = handles.scrsz;
pos = round([50 scrsz(4)*0.4 400 300]);
stampinfo = handles.stampinfo;
N = length(stampinfo);
hplot = figure(25); clf('reset')
set(hplot, 'NumberTitle', 'off', ...
'MenuBar', 'none', ...
'ToolBar', 'none', ...
'Name', 'Set up fitting', 'P... |
79db6653094b72610515dbc5e3975273defa285c2ea6826df1794420c7e68460 | MATLAB | 849 | 28 | clc
clear all
close all
addpath(['.' filesep 'eeglab2022.0' filesep]);
eeglab;
eeglab_template = EEG; % empty template of eeglab struct
close all; % close eeglab
EEG_dyad = pop_biosig('eegdata/dyad02.bdf'); % load one bdf of your dataset
NB_EEG_CHAN = 64; % set number of EEG el... |
3a0e3789a0b6c8d7d08bcad2de302973655abd9b64c06cca89e62d881fa108f1 | MATLAB | 852 | 38 | function out = FindDuration(indx);
%FINDDURATION
% Usage: out = FindDuration(indx)
%
% This is a short little function that finds a jump in the indx vector
% and then spits out the number of elements before that jump. It does
% this for all jumps it finds. By a jump, I mean a discontinutity in the
% index.... |
8ec4a85bf6e07569e181b158ae0ad7a9e5c8713a35394733c033e02cb27951e8 | MATLAB | 852 | 24 | function [AllX] = ea_unified_networkmapping_recalcvals_sk(obj,sk)
AllX=obj.results.networkmapping.(ea_conn2connid(obj.calcsettings.netmap_connectome)).connval;
td=ea_getleadtempdir;
% get nifti space
switch size(AllX,2)
case 902629 % 222
space=ea_load_nii(fullfile(ea_getearoot,'templates','spacedefinition... |
efb69d05cdc6715fe4ed01c5e2ba0b217a820eb1c938700502ae8beca5c304c0 | MATLAB | 852 | 29 | function X = chop(Xin,n,unit)
%CHOP CHOP(X,n) rounds elements of X to n significant figures.
% CHOP(X,n,unit) rounds the elements of X to n significant
% figures whose digits (mantissa) are exactly divisible
% by unit.
%
% e.g. chop(3.141592,5) returns 3.141600000..
% e.g. chop(3.14159... |
671643af1c6e8b9cd2d851c6f59681718469ee6a2624d88f1956e8bdea04ab92 | MATLAB | 854 | 34 | % Euclidean distance between polyhedra
% Section 8.2.1, Boyd & Vandenberghe "Convex Optimization"
% Joelle Skaf - 10/09/05
%
% Given two polyhedra C = {x | A1*x <= b1} and D = {x | A2*x <= b2}, the
% distance between them is the optimal value of the problem:
% minimize || x - y ||_2
% s.t. ... |
d5f9829cf312119d60e958c8dc43cdd2957f21e5b2a4f0d7d4f08baf02e9da34 | MATLAB | 854 | 36 | function in = UIInPolygon(X,Y)
%UIInPolygon - Find points in interactively defined polygon zone.
%
% Mouse buttons:
% left = add polygon point
% right = remove last polygon point
% middle = close polygon
%
% USAGE
%
% in = UIInPolygon(X,Y)
%
% X,Y polygon coordinates
% in ... |
330fbaf622c7bb45fbaadbd1574c7537ec0151fd68ef679775b6a5612b3d40ae | MATLAB | 855 | 33 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% demo script for surface repairing using surf2vol and remeshsurf
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% preparation
% user must add the path of iso2mesh to matlab path list
% addpath('../');
% user nee... |
94a5032c9d13f9378462077c32750839558b664abcada1bb3c9c6e400a84512b | MATLAB | 855 | 40 | function oldcolor=setlinecolor(colors)
% Usage ... setlinecolor(colors)
%
dlha = get(gca,'children');
if (nargin==0),
colors=[];
end;
if (isempty(colors)),
getcol=1;
colors=ones(length(dlha),3);
else,
getcol=0;
end;
if (length(dlha)>1)&(size(colors,1)==1),
disp(' making all lines the sa... |
994ec91d77affe948d457c522b31f0c748cf916b997a052e0e6402ca198eae51 | MATLAB | 855 | 24 | function loglik = RicianLogLik(meas, signals, sig)
% Computes the log likelihood of the measurements given the model signals
% for the Rician noise model.
%
% loglik = RicianLogLik(meas, signals, sig) returns the likelihood of
% measuring meas given the signals and the noise standard deviation sig.
%
% meas are... |
97182b9c055b015a20434130c407f62df62a749dab6639e1a4e542a42e3b5028 | MATLAB | 856 | 41 | plot(data_PiezoMonitor(100000:200000));
% Downsampling to 7.5Hz
% 降采样到7.5,原始32k，
pktemp = [];
for i = 1 : 4911
pktemp(i) = mean(data_PiezoMonitor((4000*(i-1)+1):(4000*i)));
end
plot(pktemp);
hold on
plot(Cssimval0);
plot(a11(:,2));
% i=8;
% figure
% plot(data_PiezoMonitor);
% plot(data_PiezoMonitor(i*90*30000:(i+... |
b94e83e9ebdafce4a058b6aa8ed0c815179331869c5baf081f73e700800e4e19 | MATLAB | 856 | 38 | function roi2roi_correl(sublist,roilist,outfile)
% read in text files to create matlab cells
sID=fopen(sublist);
sublist=textscan(sID,'%s');
sublist=sublist{1};
fclose(sID);
rID=fopen(roilist);
roilist=textscan(rID,'%s');
roilist=roilist{1};
fclose(rID);
% iterate subjects/rois to create matrix.
for sub=1:length(sub... |
c37dc8076588b0557cc0faef26673ad6215bbee858dc1fb0b5191ba0f6f52d46 | MATLAB | 856 | 36 | function intersect=CheckInputMesh(V,F,T)
if(exist('T','var'))
F1=T(:,[1 2 3]);
F2=T(:,[1 4 2]);
F3=T(:,[1 3 4]);
F4=T(:,[3 2 4]);
F5=F;
F=[F1;F2;F3;F4;F5];
end
[intersect1 FV]=CheckMeshInterSections(V,F);
if(intersect1)
warning('CheckInputMesh:Input','Mesh intersections... |
19ea5cb22db98861640f857e5d1a40b2a947980bf2a946da58a3a176bf0bd600 | MATLAB | 858 | 33 | function data=locsmooth(data,Fs,Tw,Ts)
% Running line fit (using local linear regression) - 1d only, continuous
% processes
% Usage: data=locsmooth(data,Fs,Tw,Ts)
% Inputs:
% Note that units of Fs, movinwin have to be consistent.
% data (single vector)
% Fs (sampling frequency) - optional. Default 1
% Tw ... |
1b97abdc07d5c7d3883b97b3c50e361258cab76f5df92b48b0bb9e36e7bb7af9 | MATLAB | 858 | 33 | function plotProportionMapCCF(dorsalMaps, allROIs, propField, color)
% Creates a binned and smooth map of cell count proportions based on the
% field propField
% Figure
allenMapSMc(dorsalMaps, [-3.6, 0, -2, 3]) % Creates figure by itself
% Plot params
xLimits = [-4 0];
yLimits = [-2.35 3.3];
gridRes = 50;
smoothSD = ... |
667e419e727212a25365a59442cbfc3183769fb65eb9e50b2aeaf1bd626f83a8 | MATLAB | 858 | 30 | function [whichnormmethod,template]=ea_coregmethod(directory)
try
load(fullfile(directory,'ea_normmethod_applied'));
cnt=0;
while 1
whichnormmethod=norm_method_applied{end-cnt};
switch whichnormmethod
case {'ea_normalize_apply_normalization'}
cnt=cnt+1;
... |
cf7062885c6b5f5d422124e4f4f44776c764d0ed8d8b9d049939b8463dc5e609 | MATLAB | 858 | 25 | % DLC.load
% Read DLC in csv format into a MATLAB table.
% 2022-07-13. Leonardo Molina.
% 2023-11-09. Last modified.
function data = load(path)
fid = fopen(path, 'rt');
% Ignore first line.
fgetl(fid);
% Get header.
line = fgetl(fid);
columns = strsplit(line, ',');
nColumns = nu... |
e664a1ca15de50eaf5836343cc2042960405ac61708d95b2d84970826520391d | MATLAB | 858 | 28 | function plotPCsMapCCF(dorsalMaps, allROIs, PCnum, smoothSD, cmapInfo)
% Wrapper for plotMetricMapCCF, to simplify plotting
% Add PC values as a new field
metricField = 'PCval';
for i = 1:length(allROIs)
allROIs(i).(metricField) = allROIs(i).rotPCs(PCnum);
end
% Call mapping function
plotMetricMapCCF(dorsalMaps, ... |
23a9968ebf21a86b78ae238697b8d8501c85f3885b5b939751f2a4fadb272b93 | MATLAB | 859 | 34 | function newnode=sms(node,face,iter,alpha,method)
%
% newnode=sms(node,face,iter,useralpha,method)
%
% simplified version of surface mesh smoothing
%
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2009/10/21
%
% input:
% node: node coordinates of a surface mesh
% face: face element list of the surface mes... |
5677be88c988fe09ef900e6831ce720c31ab2ad3ce1c320e4cdc75b931ef300e | MATLAB | 859 | 28 | function Correct_all(headpath,fileexpnum)
%give this function the path of the folder you want to start in as headpath
%then give it the starter or the regex before the numbering starts
%iterates through all files and does the motion corretion using
%ADP_Motion_Correction3
cd(headpath);
filelist=dir;
for k=1:nu... |
5ff6b3a6a0958a6c74863ccd7c863e55c34ebf9358f6d8088ed3110cbc647277 | MATLAB | 861 | 15 | function S = NEXI(b,t,tex,Da,De,Dp,f)
% full KM
D1 = @(x,b,Da) Da*b'*x.^2;
D2 = @(x,b,De,Dp) b'*Dp + (De-Dp)*b'*x.^2;
Discr = @(x,b,t,tex,f,Da,De,Dp) (t./tex.*(1-2*f)+D1(x,b,Da)-D2(x,b,De,Dp)).^2 + 4*t.^2./tex.^2.*f.*(1-f);
lp = @(x,b,t,tex,f,Da,De,Dp) (t./tex+D1(x,b,Da)+D2(x,b,De,Dp))/2 + sqrt(Discr(x,b,t,tex,f,Da,De... |
a0c3122fea6402967d4d173c58900f5e6a0022c4d1022c748d6022b17fc7159d | MATLAB | 861 | 36 | function [varargout] = kruskal_mst(A,varargin)
% KRUSKAL_MST Compute a minimum spanning with Kruskal's algorithm.
%
% The Kruskal MST algorithm computes a minimum spanning tree for a graph.
%
% This method works on weighted symmetric graphs.
% The runtime is O(E log (E)).
%
% See the mst function for calling informatio... |
a1385135a7efb3c236725d471ccf3d0edc019ed39a224d35fcfe10785d40057c | MATLAB | 861 | 25 | function matrix_output=padded_cell2mat(cell_input,pad)
% Convert a ragged cell array of arrays in a padded matrix
% Pierre Morel 2015.
%With cellfun
% ticID=tic;
% maxLength=max(cellfun(@numel,cell_input));
% tempcell=cellfun(@(x)horzcat(2,x,NaN*zeros(1,maxLength-length(x))),cell_input,'Uni... |
aa970b74a87d1d44ec907c30aa530c1d2c5105558cd2c11cf068a2ec2e99c521 | MATLAB | 861 | 43 | function d = size(a,varargin)
% Method 'size' for file_array objects
%__________________________________________________________________________
% Copyright (C) 2008-2012 Wellcome Trust Centre for Neuroimaging
%
% $Id: size.m 5160 2012-12-21 16:58:38Z guillaume $
sa = struct(a);
nd = 0;
for i=1:numel(sa)
nd = ... |
d43f9f4119b4a6f98861bf8edc56e6cfaabd345fafe9910992a78b3feecd7753 | MATLAB | 861 | 22 | function ciftisave(cifti, filename, varargin)
%function ciftisave(cifti, filename, ...)
% Compatibility wrapper for cifti_write.
if ~isfield(cifti, 'diminfo')
error('cifti structure has no diminfo field, maybe use the old ciftisave code instead?');
end
tic;
try
cifti_write(cift... |
ce834580b51471f17d2b228186722d1de28ecf2a05d149e86abc04bb7e988347 | MATLAB | 862 | 31 | function obj=set_limit_extra(obj,x_extra,y_extra,z_extra)
%set_limit_extra Add some breathing room around data in plots
%
% Example syntax gramm_object.set_limit_extra([0.05 0.2],0.05)
% first argument is XLim extra, second is YLim extra, extra
% room is expressed as ratio to original limits. It is possible to set
% ex... |
e8cf506fbfafa825ff5f9d8bd64f1b733f9d0285163626c613c28ab732b9b05a | MATLAB | 862 | 30 | function canlab_help_publish(pubfilename)
% This function publishes a help file to HTML
%
% Enter the name of the script to publish as the input argument
% canlab_help_publish('CANlab_help_examples_TEMPLATE')
close all
% clear all
codedir = fileparts(which('CANlab_help_examples_TEMPLATE'));
codedir = fileparts(codedi... |
271aa6b693216d7036e7fab4767b0060ee55ddbb6e3d6a784dd32e75e1da8deb | MATLAB | 863 | 36 | function SaveEvents(filename,events)
%SaveEvents - Write events to file.
%
% USAGE
%
% SaveEvents(filename,events)
%
% filename event file name
% events event data
%
% SEE
%
% See also NewEvents, LoadEvents, SaveRippleEvents.
% Copyright (C) 2004-2011 by Michaël Zugaro
%
% This p... |
00a0644f0d0304d79c83df1e9d22e0d0ca7fe6b12b0e842b04bd72a57a47ff90 | MATLAB | 864 | 30 | function Am = createModelSignalLUT_classical(ten,alpha,tissue_parameters,sinterp,Pstruc,fid)
alpha = 0;
dirs = sinterp.bDir;
Da = tissue_parameters(1);
Dp = tissue_parameters(2);
vf = tissue_parameters(3);
[~, W] = createWeightingScheme(ten,Pstruc.b_weighting);
E = squeeze(sum(cmult(dirs,ten,1,1).*repmat(dirs',[1 ... |
104a7f34be6f899360054e6fc4d6746208877bc57c58ec34e87f5a7bced1ca7f | MATLAB | 864 | 24 | function matout = CatCA(cellin)%
% Converts a cell array of vectors 'cellin' of size MxN to a matrix padded by NaNs of
% size max_vector x N x M. This is useful for data structures in CMBHOME.
% If cellin is a matrix, matout = cellin. The reason M (epochs) gets pushed
% back to 3rd dim is that it is more often the case... |
f0de2d48d9f517a32ab808f9393f332addb9657b05940200801ca7af7b902101 | MATLAB | 864 | 29 | %CheckChronux - Make sure chronux is installed and functional.
%
% USAGE
%
% CheckChronux
% -or-
% CheckChronux(functionname) where function name is a string of the
% chronux function you want to check
% Copyright (C) 2007-2010 by Michaël Zugaro
%
% This program is free softw... |
aa700513bb1cdbaa88fe2ad30197a6d834b38ea945c7097b09798a4233af2d0e | MATLAB | 865 | 29 | function numfaces = nfaces(surface_name, hemisphere);
%
% Usage:
% numfaces = nfaces(surface_name, hemisphere);
%
% Description:
% Returns number of faces/triangles for a surface (author: @saratheriver)
%
% Inputs:
% surface_name (string) - Name of surface {'fsa5', 'conte69'}
% hemisphere (string) - Name of hem... |
5910ecca151837163c42965b7091c57f129fc4f50de3665dee230faa6bc15851 | MATLAB | 866 | 29 | function s = nansem(x)
%nansem - Compute standard error of the mean (SEM), ignoring NaNs.
%
% USAGE
%
% s = nansem(x)
%
% s vector or matrix over which the sem should be computed
% Copyright (C) 2008-2011 by Michaël Zugaro
%
% This program is free software; you can redistribute it and/or modify
% ... |
16943ec97bbb3718b641747e7451ad6e8cda121275d8e2894f81aa38dc5a58d2 | MATLAB | 867 | 32 | function [retval] = fd3(fid)
% [retval] = fd3(fid)
% read a 3 byte integer out of a file
%
% fread3.m
%
% Original Author: Bruce Fischl
% CVS Revision Info:
% $Author: nicks $
% $Date: 2007/01/10 22:55:09 $
% $Revision: 1.2 $
%
% Copyright (C) 2002-2007,
% The General Hospital Corporation (Boston, MA).
% Al... |
098c147ed05a17e0fdb9983a3da60835493b2fd3222c052b50d58f49972a39c9 | MATLAB | 868 | 30 | function psgOut = fieldtrip2danalyzer(psgIn)
% Converts a FieldTrip raw struct to danalyzer format.
%%
% Authors: Dan Denis
% Date: 2024-01-12
%%
psgOut.data = psgIn.trial{1, 1};
psgOut.hdr.srate = psgIn.fsample;
psgOut.hdr.samples = size(psgIn.trial{1, 1}, 2);
psgOut.hdr.recStart = [];
if ~iscolumn... |
48686a846260de95a53ea4e182604170f10574bcfb5f87d9998adc056c3764b1 | MATLAB | 868 | 34 | function [n,names] = plx_adchan_names(filename)
% plx_adchan_names(filename): gets the names of a/d channels in a .plx or .pl2 file
%
% [n,names] = plx_adchan_names(filename)
%
% INPUT:
% filename - if empty string, will use File Open dialog
%
% OUTPUT:
% names - array of a/d channel name strings
% n - ... |
560022988d15a065c87b5a1c2c243113b2742cd99b3afc3efab7e97435ece3da | MATLAB | 868 | 19 | function [phiWMS, phiWMS_c] = calculate_corrected_phiWMS(atoms)
% Get all atoms using PhiIDFull
% atoms = PhiIDFull(X1, X2, Y1, Y2);
% Calculate ΦWMS using the atomic decomposition:
phiWMS = -atoms.rtr + ... % -I{1}{2}→{1}{2}
atoms.str + ... % Part of Syn(X1,X2;Y1Y2)
... |
a275002172dc8506ccc3791f0b08363f46d399386298b0e366d4712b3dfd4523 | MATLAB | 868 | 21 | function [intact_fractions] = LCN_calc_intact_tracer_hill(params,times)
%
% the function y(t) = b/(1+(a/t)^n) will be fitted with b set to 1
% b = asymptotic value, assumed 1 at time 0 (100% intact tracer)
% a = t where the function reaches half of its maximum (b/2)
% n determines the steepness of the slope
%
% FORMAT:... |
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