sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
ae62f11547aee81079af8f8777a1d25663ce60558e66286a95a9f9f9dcf92036 | MATLAB | 1,502 | 63 | clc
clear all
close all
set(0,'defaultfigurecolor',[1 1 1]);% set figure background color
if ~contains(path, '/Users/guofanhua/Desktop/gfh/tools/MatlabTools/BrainSpace-latest/matlab')
addpath(genpath('/Users/guofanhua/Desktop/gfh/tools/MatlabTools/BrainSpace-latest/matlab'));
end
%% ======================= step 1 ... |
dff4d7181812e16f23ee3ddbd9a09282c5aa6ffd6d2d2706d0bcd8ba1bd76b5d | MATLAB | 1,503 | 59 | function savestl(node,elem,fname,solidname)
%
% savestl(node,elem,fname,solidname)
%
% save a tetrahedral mesh to an STL (Standard Tessellation Language) file
%
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2012/02/14
%
% input:
% node: input, surface node list, dimension Nx3
% elem: input, tetrahedral... |
042b79fe4cc329068dee24fb308470ad14309bbb5a962d7545e163af55e46847 | MATLAB | 1,504 | 59 | function [ datamean,datastd ] = BoxAndScatterPlot( data,varargin )
%BoxAndScatterPlot(data) makes a box plot with data points.
%
%INPUTS
% data {ngroups} cell array - each cell has a set of data points
% (options)
% 'colors' [ngroupx x 3] matrix of colors for each groups
% 'labels' {ngroups} ce... |
409b3e6ee696f345f372ba6963073081bf8f592be7d9df8dc8d4a12e9337cab2 | MATLAB | 1,505 | 26 | function SANDIinput = TrainMachineLearningModel(SANDIinput)
%%%%%%%%%%%%%%%%%%%%%%%%%%% USER DEFINED INFO %%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Define the parameters to build the training set. This can (and should) change according to the acquisition!
% UB stands for upper bound. Model parameters values will be chosen ran... |
63d58e03711bc81f8ba53f589769e98b8a4ef71c72889c1dfc0f731b9eef0314 | MATLAB | 1,505 | 47 | function [outR, outID] = makeBayesWeightedCorrBatch1(Pr, bID, varargin)
%function [outR, outID] = makeBayesWeightedCorrBatch1(Pr, bID, preComputedQ (optional))
% inputs
% Pr: [nTimeBin X nSpatialBin] matrix of posterior probabilities
% (each row should sum to 1)
% bID = 'bin Id's', [nTimeBin X 1] vector
% ... |
b1176cd83c737ad46f66e34ce1fc92007400750dde87cb093fe7bddcd5cf22e0 | MATLAB | 1,506 | 39 | function [otuMap1,otuMap2,otu_names_merged] = generateMergedOTUMap(otu_names1,otu_names2)
% This file is a part of the MDSINE program.
%
% MDSINE: Microbial Dynamical Systems INference Engine
% Infers dynamical systems models from microbiome time-series datasets, and
% predicts biologically relevant behaviors of the... |
2fae1adddbcde093d2d42e4ab8323ace013c403cd4df9004e1474c07e44ed8b7 | MATLAB | 1,507 | 41 | %% Axes inside layouts
% This example demonstrates how axes are affected by being placed into
% layouts. The layouts take into account the "ActivePositionProperty" in
% order to determine whether to set the "Position" or "OuterPosition"
% (default) property of the axes.
%
% Copyright 2009-2013 The MathWorks, Inc.
%% O... |
7279d4a8b385c3a66997737a8498228a97d4be80fcbd42e00bd7a251663e34ef | MATLAB | 1,507 | 53 | function [C] = corr_col(A, B, dim)
%CORR_COL quickly compute the column by column correlation between two large matrices
%
% C=CORR_COL(A, B) computes the correlation for each column in A of the
% congruent column in matrix B. A and B must be identical in size
%
% C=CORR_COL(A, B, dim) computes the correaltions for th... |
686f579e2c2851279d84e6ffa242ef6fcf7ce1737b56b821b354ca5756d50b45 | MATLAB | 1,508 | 49 | %%***********************************************************
%% lmiexamp3: generate SDP data for the following LMI problem
%%
%% max eta
%% s.t. [A*P+P*A' P*B'] + eta*[0 0] <= [-G 0]
%% [B*P 0 ] [0 I] [ 0 0]
%% P >= 0
%% P and eta are variables, P symmetric.
%%
%% Ref: ... |
1bae13bbbc2f157ea444d3098d3d90ee88e938ff5b247d2f6b3063a0d1437c89 | MATLAB | 1,509 | 40 | function C = conv2fft(varargin)
% C = conv2fft(A, B)
% C = conv2fft(H1, H2, A)
%
% C = CONV2FFT(A, B) performs the 2-D convolution of matrices A and B.
% If [ma,na] = size(A), [mb,nb] = size(B), and [mc,nc] = size(C), then
% mc = max([ma+mb-1,ma,mb]) and nc = max([na+nb-1,na,nb]).
%
% C = CONV2FFT(H1, H2, A) fi... |
7f94063920543efe40a029d50ea66780e840cc98fd033f03c1606c0cf65b83b0 | MATLAB | 1,509 | 45 | types = [13 14];
A = allflies([allflies.trtype]==types(1));
B = allflies([allflies.trtype]==types(2));
% A = thing([thing.trtype]==types(1));
% B = thing([thing.trtype]==types(2));
for i = 1:length(A)
figure; set(gcf,'Position',[405 235.5 368 475.5])
subplot(1,5,[1 2]); imagesc(A(i).gaussianfluor);... |
fb3658430cb4ee4c3dc6cdb47baab80671f22a4072930982aa07cedacb218290 | MATLAB | 1,509 | 62 | function D = dijkstra_all_sp(G,optionsu)
% DIJKSTRA_ALL_SP Compute all pairs shortest path using repeated Dijkstras
%
% This algorithm runs a series of Dijkstra's shortest path problems to
% compute the all pairs shortest path matrix.
%
% Using one of the other algorithms is preferable, however, this algorithm
% is us... |
ae04bc5dec0722faee67a394fb7eb95e821bbbd6a35f211b3aeb3439b86f7fd9 | MATLAB | 1,510 | 53 | function outpoints = tal2icbm_other(inpoints)
%
% This function converts coordinates from Talairach space to MNI
% space (normalized using templates other than those contained
% in SPM and FSL) using the tal2icbm transform developed and
% validated by Jack Lancaster at the Research Imaging Center in
% San Antonio, T... |
22ac4ad31aa7ba52453280fc2541a36bafc23e17d783a5617154c5e9fde121c6 | MATLAB | 1,513 | 36 | function y = bwblkslv(L,b) %#ok
% BWBLKSLV Solves block sparse upper-triangular system.
% y = bwblkslv(L,b) yields the same result as
% y(L.perm,:) = L.L'\b
% However, BWBLKSLV is faster than the built-in operator "\",
% because it uses dense linear algebra and loop-unrolling on
% supernodes.
%... |
a78e61e7fcc77894b05996aaf06fd163c61819c404bcdfa3999aefef9ee43390 | MATLAB | 1,513 | 45 | function rgbdata = cmplx2rgb(cmplxdata, logmag)
%CMPLX2RGB Convert complex matrix to an imageable RGB form.
% RGBDATA = CMPLX2RGB(CMPLXDATA) converts the [M x N] CMPLXDATA to an
% [M x N x 3] truecolor matrix in RGB color coordinates. The mapping
% goes through HSB space, where the hue is determined by t... |
c58a73ef8486cbb5775c31ca5c2baa4b81e96f0c9f904bb2251f7525addeaa4c | MATLAB | 1,515 | 45 | function M = Array2Matrix(A)
%Array2Matrix - Transform an N-dimensional array into a matrix.
%
% Each line in the output matrix lists the subscripts for all dimensions
% (one per column) and the corresponding value in the array.
%
% Copyright (C) 2009-2011 by Michaël Zugaro
%
% This program is free software; you ca... |
fe897731b71b2e9bc5c76a127352750ab616b04fd7182db84275db6b302f8d6d | MATLAB | 1,516 | 60 | function [ind,tf] = OverThresholdDetect(A, thresh, min_sep, min_length)
% Searches for continuous epochs for which A is at least thresh, merges those
% separated by less than min_sep indices, and returns ind, an Nx2 array of
% indices for continuous epochs over thresh
% ind = ThresholdDetect(A, thresh, min_sep, min_len... |
a94b18d32089329f88a75f0bafe320a62ad76170be02659865167cf398ac89d7 | MATLAB | 1,517 | 45 | function ea_checkprefs
% Check prefs files and adapt for new prefs folder
prefsDir = ea_prefsdir;
prefs = ea_regexpdir(ea_gethome, '^\.ea_prefs.*', 0, 'f', 1);
if ~isempty(prefs)
newprefs = replace(prefs, [ea_gethome, '.'], [prefsDir, filesep]);
cellfun(@(x,y) movefile(x,y,'f'), prefs, newprefs);
end
prefs ... |
1a0d21d85071a9cf1fa8aa84942920562fe008c861bd74058c38fc3c896c4d12 | MATLAB | 1,518 | 25 | function [OpenedFileName, Version, Freq, Comment, Trodalness, NPW, PreTresh, SpikePeakV, SpikeADResBits, SlowPeakV, SlowADResBits, Duration, DateTime] = plx_information(filename)
import CMBHOME.PLX2Mat.*
% plx_information(filename) -- read extended header infromation from a .plx file
%
% [OpenedFileName, Version, Freq... |
2d32b264da8461056ef4e05b6f9fa3ce9269316cffec225b08e35d0cb8e278ca | MATLAB | 1,520 | 52 | function nirs = buildNirsMesh(baseMeshPath, srcCoord, detCoord, link, outPath, opts)
%BUILDNIRSMESH Load a NIRFASTer mesh, place optodes, and save.
% baseMeshPath : path to a NIRFASTer .mat mesh (for load_mesh)
% srcCoord : Sx3 double, source coordinates already projected to scalp
% detCoord : Dx3 double, detector ... |
4b6c69b19d0c3ddcdcf96221d8733be5eedf913ea27855094235ae49fc4143fe | MATLAB | 1,521 | 35 | function [T,Tout]=RemoveInvalidTetrahedrons(T,V,F)
NZ=zeros([size(V,1) size(V,1)],'int8');
Fdel=true([size(T,1) 1]);
for i=1:size(T,1)
Edge=[T(i,1) T(i,2)];
if(NZ(Edge(1),Edge(2))==0), if(CheckVisiblePoint3D(V,F,Edge(1),Edge(2))), NZ(Edge(1),Edge(2))=1; else NZ(Edge(1),Edge(2))=-1; end; end
if(NZ(... |
986aa2dd6dc991c56fcb7b003666513167a65ae20dbb8086d6e16b39ab97b1fd | MATLAB | 1,521 | 57 | % Section 8.2.2: Separating polyhedra in 2D
% Boyd & Vandenberghe "Convex Optimization"
% Joelle Skaf - 10/09/05
% (a figure is generated)
%
% If the two polyhedra C = {x | A1*x <= b1} and D = {y | A2*y <= b2} can be
% separated by a hyperplane, it will be of the form
% z'*x - z'*y >= -lambda'*b1 - mu'*b2 > ... |
ba3e64f5143a3755a05166c281dfdea40f6efa396bf4e7b718893152cc4e641d | MATLAB | 1,521 | 65 | function y=estLaserPower(lambda,pockel)
% Usage ... y=estLaserPower(lambda,pockel)
% wavelength pockel= 50 100 150 200 250 300 350, power is before obj
% assume pockel 0 is 0mW
data=[
700 55 180 305 392 370 205 40
740 70 280 565 720 710 510 245
780 90 360 730 950 1000 780 450
820 80 320 710 920 1060 950 600
... |
f4acff63e6334bdad192864161156fd7b65e93eb83983414d986493f96b413ea | MATLAB | 1,523 | 52 | % fastregress - perform fast regression and return p-value
%
% Usage:
% [ypred, alpha, rsq, B] = myregress(x, y, plotflag);
%
% Inputs
% y - y values
% x - x values
% plotflag - [0|1] plot regression
%
% Outputs
% ypred - y prediction
% alpha - significance level
% R^2 - r square
% slope - slope of the fit
%
%... |
f67cea2ce154acb67707aac246ddfe8065a4b5e187ece139f39aeb9584cfb971 | MATLAB | 1,523 | 44 | function [k,d] = CORE_mindist(x,y)
%CORE_MINDIST Core computational routine for MINDIST.
% [K,D] = CORE_MINDIST(X,Y), given an M x P matrix X and an
% N x P matrix Y, returns the M x 1 vectors K and D such that
% K(i) = argmin_j ||X(i,:) - Y(j,:)||^2 and
% D(i) = min_j ||X(i,:) - Y(j,:)||.
% (||.|| m... |
1c5add4f93e4528f40b4d4b5d989190f98d242241860f5b241376e9e029916bc | MATLAB | 1,524 | 51 | %PDF2EPS Convert a pdf file to eps format using pdftops
%
% Examples:
% pdf2eps source dest
%
% This function converts a pdf file to eps format.
%
% This function requires that you have pdftops, from the Xpdf suite of
% functions, installed on your system. This can be downloaded from:
% http://www.foolabs.c... |
64ea1ce7e6cc0c64a512950ba636a769c1747b1fe07a4233356946063c5f8cd4 | MATLAB | 1,524 | 72 | %%
[sampling_num,cell_num]=size(x0);
view_point=8;
%³õʼ»¯½á¹¹ÌåÊý×é
clear peak_test;
peak_test.peak_imfo=[];
peak_test.mean=0;
peak_test.stu=0;
peak_test.old_sequence=[];
peak_test.new_sequence=[];
peak_test=repmat(peak_test,[cell_num view_point]);
%·åֵɸѡ£¬²ÎÊýÉèÖãº
params.upper=3; %×î¸ßµã´óÓÚparams.upper±... |
79766e06b6d7c5016005fdfb9e2df3b70d2bd325b6deecbfde513593d264a20a | MATLAB | 1,524 | 38 | function [azi,ele]=hor2sph(lat,pol)
%HOR2SPH transform horizontal-polar to spherical coordinates.
% [azi,ele]=hor2sph(lat,pol)
%
% Input:
% lat ... lateral angle (-90 <= lat <= 90)
% pol ... polar angle (-90 <= pol < 270)
%
% Output:
% azi ... azimuth (0 <= azi < 360)
% ele ..... |
1441e10d89893099be70ecb588c19dceaf86b784a22d7c7afa7f92369baefc83 | MATLAB | 1,525 | 48 | function h = DendriticSpine_hist(handles, ax1, ax2, targetID, ...
binvalue, spine_evolve, Dendrite_CrossSess)
DendLoc = table2array(Dendrite_CrossSess);
DendLoc_plot = DendLoc(DendLoc(:,1)==targetID,:);
SpineLoc = table2array(spine_evolve);
NumSess = length(handles.datafilename);
im = handles.im_norm_mask;
... |
39febf6e42eaa3fbd2a437131e0f2c745fe3b967b8b9b7a11542994d47c9d9f1 | MATLAB | 1,525 | 43 | function computeSaliencyMaps(params, split)
% computeSaliencyMaps(params)
%
% ----------------------------------------------------------------------
% Matlab tools for "Predicting human gaze beyond pixels," Journal of Vision, 2014
% Juan Xu, Ming Jiang, Shuo Wang, Mohan Kankanhalli, Qi Zhao
%
% Copyright (c) 201... |
d9837b5feee5281bbcb74a92ff97006723fe0dab43a7cb1377fe878acf5b95d5 | MATLAB | 1,526 | 47 | function orientation = FlyOrient(subset_frame, threshold)
%FLYORIENT
% Usage:
% orientation = FlyOrient(subset_frame, threshold)
%
% This function takes in a subset frame around the fly (calculated by
% FindFly) and discards the 3D data by placing points where the pixel intensity
% is larger than the user cho... |
444d87776355b92a4aec74b03977a6da8bf5f9ff6d93c86d6c569939c3fb0baa | MATLAB | 1,527 | 21 | % CVX example library
%
% antenna_array_design/ - Antenna array design
% circuit_design/ - Circuit design
% cvxbook/ - Figures, examples, and exercises from the book <a href="http://stanford.edu/~boyd/cvxbook">Convex Optimization</a>
% filter_design/ - Filter design... |
6e9da2a72c24f155e9768a4a0ffd62cdd9ae3e7d620c5075ed8e30d8432b235e | MATLAB | 1,528 | 51 | function varargout=s2v(node,face,div,varargin)
%
% [img,v2smap]=s2v(node,face,div)
%
% shortcut for surf2vol, coverting a surface to a volumetric image
%
% author: Qianqian Fang (fangq <at> nmr.mgh.harvard.edu)
%
% input:
% node: node list of the triangular surface, 3 columns for x/y/z
% face: triangle node indices, ... |
5f520cf73240f672bf803756b67c76be09a648fe31afecdbb6373ce0dd4c06e3 | MATLAB | 1,530 | 54 | function [f,header]=readPrairie(fname,imno,header)
% Usage ... [f]=readPrairie(fname,imno,header)
do_files=0;
if strcmp(fname(end-3:end),'.tif')|strcmp(fname(end-3:end),'.TIF'),
do_files=1;
end;
if do_files,
if length(imno)==2, imno=[imno(1):imno(2)]; end;
for mm=1:length(imno),
tmpname=sprintf('%s_%06d.ti... |
902a8358f643360fd5e5880c1d3424cada182ba9da280ed810e94d39fe1c0404 | MATLAB | 1,530 | 68 | function DBRemoveFigures(query)
%DBRemoveFigures - Remove all figures that match given criteria.
%
% Actual removal will require confirmation from the user.
%
% USAGE
%
% DBRemoveFigures(query)
%
% query optional figure list query (WHERE clause; see Example)
%
% SEE
%
% See also DBAddFigure, DBGet... |
aae5f470fe5e59f45e87dc5b8413e9d0fd89aaf2dddecfc8281c4c19081ab227 | MATLAB | 1,530 | 39 | %% Create model outputs
% First you must load the stims file as `stims`
% Then, navigate to the model_code folder
for i = 1:length(stims)
gustres.heading = stims(i).heading;
gustres.Atheta = stims(i).gamma; %Atheta; gamma
gustres.Amag = stims(i).airspeed; %Amag; airspeed
gustres.Otheta = stims(... |
79b5652fc58ad76319c0ce1581b2a813e99f54d6657e9e5d93a1fa3f04a19337 | MATLAB | 1,531 | 43 | function [neighbors, distances] = knn(data, k)
%KNN Finds the K nearest neighbors in a reference matrix.
% NEIGHBORS = KNN(DATA, K) takes the N x D matrix DATA, where each row
% is treated as a D-dimensional point, and finds the K nearest neighbors
% of each point (using a Euclidean distance metric)... |
3adc249793c61257285097411ea756bcc487a12261eb8cf3575c72641ef9f647 | MATLAB | 1,533 | 41 | function [n, evchans] = plx_event_chanmap(filename)
% plx_event_chanmap(filename): return map of raw event numbers for each channel
%
% [n, evchans] = plx_event_chanmap(filename)
%
% INPUT:
% filename - if empty string, will use File Open dialog
%
% OUTPUT:
% n - number of event channels
% evchans - 1 ... |
5520a466d8355f9a44803e93d2ce94d4717bf92e91a2813ec325cd3ed6380bba | MATLAB | 1,533 | 45 | % This code Create an R2 prime map (used for X-separation) (see README.md for more details).
%
%%%%%%%%%%%%%%%%%%%%% VARIABLES %%%%%%%%%%%%%%%%%%%%%%%%
%%% Inputs: %%%
% T2star_img- 3D T2* map
% T2_img- 3D T2 map (created using the CreateT2map.m script)
%%% Output: %%%
%
% R2prime_img- 3D R2' map
%%%%%%%%%%... |
c80e058c1dd0ad79c30f8f8282aef81d322db71cf0176dc0b177cb0a9a78ba08 | MATLAB | 1,534 | 54 | function [] = plx_spike_info(filename)
% plx_spike_info(filename): prints .plx file spike channel info
%
% plx_spike_info(filename)
%
% INPUT:
% filename - .plx file name. Will use file open dialog if filename is empty string
%
% OUTPUT:
% (none)
if nargin ~= 1
error 'expected 1 input argument';
e... |
7557bf08383f7f5fc07bb66b3f195190a10d30442308737221e025a7a226383b | MATLAB | 1,535 | 63 | function [PvalpermV0001C,PvalpermV0005C,PvalpermV001C,PvalpermV005C] = getclusterinfo(PvalpermV005,PvalpermV001,PvalpermV0005,PvalpermV0001,iperm);
Coninf = bwconncomp(PvalpermV005);
nums = Coninf.NumObjects;
if nums>0
for i = 1:nums
PvalpermV005C(i,1) = length(Coninf.PixelIdxList{i});
end
else
Pv... |
c1798a251cec0a29e9e0b6da56ac50db4555707be98bda27c76a0958884a9907 | MATLAB | 1,535 | 32 | % SOFA API - demo script
% Copyright (C) 2012-2013 Acoustics Research Institute - Austrian Academy of Sciences
% Licensed under the EUPL, Version 1.1 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "License")
% You may not use this work except in compliance with t... |
ce9394fe26347b857cb73281a7f726c6f5790e31802ec496155f0356328a57e2 | MATLAB | 1,535 | 41 | function pred=lengauer_tarjan_dominator_tree(A,u,varargin)
% LENGAUER_TARJAN_DOMINATOR_TREE Compute a dominator tree for a graph.
%
% A dominator tree encodes dominates relations. A vertex u dominates a
% vertex v if all paths to v must go through u. In an undirected graph,
% this means that if u dominates v, then v ... |
f4d15d8c4624e55ee1e9ce4c451a7f94ed51d7a8ee8fbcf959b98288e9b8e125 | MATLAB | 1,535 | 46 | function ea_ftr2nii(ftrFile, reference, outputName)
if ~exist('reference','var') || isempty(reference)
reference = [ea_space,'t1.nii'];
end
refnii = ea_load_nii(reference);
if ~exist('outputName','var')
outputName = regexprep(ftrFile, '\.mat$', '.nii');
end
[fibers,idx,voxmm,mat,vals] = ea_loadfibertracts(ft... |
0333ba3b7e2560c9c2c6be1912262b986f87d6e70c7bbf28741a69410246121b | MATLAB | 1,536 | 57 | function [R2,R2adj]=ea_R2map_weighted(varargin)
% creates a correlation nifti file given a set of images and a
% regressor ("R map" in Horn 2017 AoN)
% ea_R2map_weighted(fis,regressor,outputname,mask,sk,weights) % sk can be 'k','s','sk'
% for smoothing and normalization options. Mask only necessary if
% choosing 'k' o... |
66d47eb5f74787fdbdb09dfac185a5f23cb97ddf7ccac46911197a7895d2b834 | MATLAB | 1,536 | 39 | files = dir('2308*.mat');
for f = 1:length(files)
load(files(f).name)
files(f).name
for u = 1:length(flydata)
disp(u)
starts = find(diff(flydata(u).flightstate)>0)+1;
ends = find(diff(flydata(u).flightstate)<0);
if flydata(u).flightstate(1)>0
starts = [1,... |
5b60fd00e037bf920a1770cc21d8af57439b1f61568cbe907e3249e218dc998b | MATLAB | 1,537 | 63 | function [yy,act_ftm_filter]=myfilter1(x,ftm_filter,ts)
% Usage ... [y,filt]=myfilter(x,ftmag_filter,ts)
%
% Filters the magnitude of the FT of x using the magnitude filter
% in Fourier domain [0,2*pi] as provided by ftmag_filter
if (size(x,1)==1), x=x.'; end;
if exist('ts'),
df=(1/length(x))*(1/ts);
ft... |
62c3f70f59187e38c826076ebc156ff90e76d10997ab4f346b888cc59b4e4b64 | MATLAB | 1,537 | 42 | function k = xml_findstr(s,p,i,n)
%XML_FINDSTR Find one string within another
% K = XML_FINDSTR(TEXT,PATTERN) returns the starting indices of any
% occurrences of the string PATTERN in the string TEXT.
%
% K = XML_FINDSTR(TEXT,PATTERN,INDICE) returns the starting indices
% equal or greater than INDICE of occu... |
dba4e1a760fe2603704b225c78910abc118f7249c196f8b06454a7ccb73a414a | MATLAB | 1,538 | 48 | function [p ei ej]=planar_canonical_ordering(A,varargin)
% PLANAR_CANONICAL_ORDERING Compute a planar canonical ordering
%
% See
% http://www.boost.org/doc/libs/1_36_0/libs/graph/doc/planar_canonical_ordering.html
% for a description of a planar canonical ordering
%
% p = planar_canonical_ordering(A) returns the vertex... |
7a42c516994cfec27995c50db258c68fb08569edb233b61bf596f59f71046f7b | MATLAB | 1,540 | 59 | function [curv, fnum] = read_curv(fname)
%
% [curv, fnum] = read_curv(fname)
% reads a binary curvature file into a vector
%
%
% read_curv.m
%
% Original Author: Bruce Fischl
% CVS Revision Info:
% $Author: nicks $
% $Date: 2007/01/10 22:55:09 $
% $Revision: 1.2 $
%
% Copyright (C) 2002-2007,
% The General H... |
b9a49110168ec0c4e50bd271cbe53343eb6823f976d9419243ccd501d6b06050 | MATLAB | 1,540 | 43 | function [dregmode, Nbatch, savegrad] = reg_dregmode(handles, RegPara, figuretitlename, w, Nbatch)
savename = RegPara.savenamebase;
if handles.savetoTif == 0 && handles.savetoBin == 0 && handles.savesubsampletif == 0
handles.savetoBin = 1;
set(handles.savetoBin_check, 'Value', handles.savetoBin)
drawnow
en... |
1b3c06786528a126692315ba496d1e5ae0409f4245dae5b162fcaaaf31b179e2 | MATLAB | 1,541 | 51 | function [q] = meshgrid2vec(xgv, ygv, zgv)
%MESHGRID2VEC meshgrid matrices to matrix of column vectors
%
% [q] = MESHGRIDVEC(xgv, ygv) takes the matrix of abscissas XGV and
% ordinates YGV of meshgrid points as returned by MESHGRID and arranges
% them as vectors comprising the columns of matrix Q.
%
% ... |
25c965c1a9bb8a1df13ce030807878de5317cd8fdc1afed9bb9c0fc78a6d8234 | MATLAB | 1,541 | 68 | % FDR correction for all p values in our paper.
%
% Written by Nanbo Sun and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
clear('all');
p_10foldCV = [2.07070741778782e-05 ...
0.0369183037868885 ...
0.00447403666057892 ...
0.0440814279686049 ...
0.000190379245466227 ...
0.4848491... |
a80804b280086e85027a6b2109da113f3ce67d2ad4fcb921a0816ec2ad9b3be5 | MATLAB | 1,541 | 57 | function [pnt, tri] = read_off(fn);
% READ_OFF reads vertices and triangles from a OFF format triangulation file
%
% [pnt, tri] = read_off(filename)
%
% See also READ_TRI, READ_BND
% Copyright (C) 1998, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.fieldtriptoolbox.org
% for the documentation a... |
f19f0c241f7919fc909fe25de910c4e707739910b73d9a39ca7dc2bff0bd6ce8 | MATLAB | 1,541 | 48 | %% Figure 9 supp 3
% RUN fig9_analysis, then return here
fig9_analysis
% Load map
load('allenDorsalMap.mat');
% Params
cmap = 'L20';
smoothSD = 0.15;
colors = cmapAreas();
% Contour params
contConfig.thresholds = [98 95 90];
contConfig.alpha = 0.5;
contConfig.lw = 0.9869;
contConfig.ls = {'-', '--', ':'};
%% Panel ... |
7ebc362756be52d11947835dc28d56c4609b047d7eba17fd0794820bd74e8fc0 | MATLAB | 1,543 | 32 | function varargout=ea_coregpostopct_fsl_multiple(options)
% Wrapper function for FSL FLIRT (multiple-run) registration of post-op CT
% __________________________________________________________________________________
% Copyright (C) 2019 Charite University Medicine Berlin, Movement Disorders Unit
% Andreas Horn
if is... |
e67a9de5ed8fe588c31af380bffc66177dddad47402d263a332ba0b830a4787a | MATLAB | 1,543 | 47 | function amplitudes = LoadSpikeAmplitudes(filename,nChannels,nSamples,peak,rate)
%LoadSpikeAmplitudes - Read spike times, cluster IDs and amplitudes from disk.
%
% USAGE
%
% amplitudes = LoadSpikeAmplitudes(filename,nChannels,nSamples)
%
% filename spike waveform file name
% nChannels nu... |
2b48fe956ba6d716ad74aa356b11d91456d9fe115361f0411907eecb967d50a6 | MATLAB | 1,545 | 38 |
% Script to generate stim.volumes for StimSets or an arbitrary stim_vector
% By Butenko, konstantinmgtu@gmail.com
e_field_file = '/home/forel/Documents/data/CologneStimFit/derivatives/leaddbs/sub-CIR02/stimulations/MNI152NLin2009bAsym/stimsetstest/sub-CIR02_sim-4D_efield_model-ossdbs_hemi-R.nii';
stim_vector = []; %... |
e54736eb50e8ba0a0c8eb53a42bc64c4f9cc8dab2902f184bdd950b4104b343b | MATLAB | 1,545 | 57 | function [S s] = circ_var(alpha, w, d, dim)
% s = circ_var(alpha, w, d, dim)
% Computes circular variance for circular data
% (equ. 26.17/18, Zar).
%
% Input:
% alpha sample of angles in radians
% [w number of incidences in case of binned angle data]
% [d spacing of bin centers for binned data... |
b3d432238c30167e779aefb9c1b81233a1cf51092f7073b2372d708bd8b46ed0 | MATLAB | 1,546 | 53 | function funcsel = prepCrossSessReg(handles)
funcsel = [];
pos = get(handles.mainfigure, 'Position');
scrsz = handles.scrsz;
pos(1) = pos(1)+100;
pos(3) = 300;
pos(4) = 300;
hplot = figure(25); clf('reset')
set(hplot, 'NumberTitle', 'off', ...
'MenuBar', 'none', ...
'Too... |
854420fe215e2b4b6ad03854481a4cc76cc06425990b99522e5fa71be6fc910e | MATLAB | 1,547 | 40 | function sparsity=spars(x)
% sparsity = sparse(x)
%
% Returns the sparsity of the matrix/vector x. It works for sparse and dense
% storage, too.
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko
% Copyright (C) 2005 McMaster University, Hamilton, CANADA (since 1.1)
%
% Copyright (C) 2001 Jos F. St... |
b31373afbbce7190f22752b857ba10f791c191fca350dded701ba7be1805cf1e | MATLAB | 1,547 | 80 | function [fnameArray] = path2array(fname,refString)
% Splits a path in to cell aray, breaking upon filesep
%
% takes in a string representing the path to a file or folder and breaks it
% into a cell array in which each cell holds the portions of the filename
% that were between file seperator symbols ('/' or '\').
%
... |
1333b6cd3df646e8939422a29bbf552e34a74492d0e2c438407a50efd27ea08e | MATLAB | 1,548 | 52 | function y=stkFilt(x,type,parms)
% Usage ... y=stkFilt(x,type,parms)
%
% Filter the stack using type and paramaters parms
%
% Example for median and smoothing filter of all images
% y=stkFilt(stk,'image',[3 0.6]);
% Example of time filtering
% y=stkFilt(stk,'fermi',{[0.02 0.2],[0.005 0.04],[-1 1],0.1});
xdim=size... |
ba1b3d1346abe293acd5c21af71be1141c53f357f5c0b27e73760fe8e5e68225 | MATLAB | 1,548 | 41 | function sleepstagesOUT = luna2danalyzer(sleepstagesIN)
% Convert a Luna score file to a danalyzer score file.
%%
% Authors: Dan Denis
% Date: 2021-07-14
%%
sleepstagesOUT.stages = zeros(height(sleepstagesIN), 1);
for i = 1:height(sleepstagesIN)
if strcmpi(sleepstagesIN.Var1(i), 'wake')
sleepstag... |
0d22e432d45a3c3641c7cb17908bf0256ea8ba3353a20b0954902ab79ad1019d | MATLAB | 1,549 | 56 | row_mean = mean(fiber(:, 800:1600), 2);
[~, sort_idx] = sort(row_mean, 'descend');
fiber_sorted = fiber(sort_idx, :);
fiber=fiber_sorted
fiber=fiber(:,1:2400)
subplot(2,2,1)
hold on
clim = [-5 5];
imagesc(fiber,clim);
colormap("parula")
ylabel('# of Trial')
ylim([1 size(fiber,1)])
set(gca,'ytick',1:s... |
95e822621fc5371885d018fc562c357f3dd16135b4c08fc90d4db0b22686c137 | MATLAB | 1,550 | 34 | function ssg_databrowse2d(spikes, assigns, show)
% SSG_DATABROWSE2D Feature projection GUI in 2D (work in progress).
% SSG_DATABROWSE(SPIKES) creates a 2-D databrowse figure. Call with a
% spike sorting object SPIKES and an optional assignments vector whose length
% corresponds to the number of waveforms ... |
bf351cc0b72b283b62e62b40303caf48345112e7897789f1d78518d0fc5a6190 | MATLAB | 1,550 | 53 | function [mean_firingRate, fanoFactor, max_firingRate, min_firingRate] = computeSpikeProp(theseSpikes)
% Handle empty or insufficient spike times
if isempty(theseSpikes) || numel(theseSpikes) < 2
mean_firingRate = NaN;
fanoFactor = NaN;
max_firingRate = NaN;
min_firingRate = NaN;... |
08cf85a78035a8d18b4089dac36717c2e89d367fda4293dcdf7c795eef4696c8 | MATLAB | 1,551 | 46 | %%*******************************************************************
%% HSDHKMdirfun: compute (dX,dZ), given dy, for the HKM direction.
%%
%% SDPT3: version 3.1
%% Copyright (c) 1997 by
%% K.C. Toh, M.J. Todd, R.H. Tutuncu
%% Last Modified: 16 Sep 2004
%%****************************************************************... |
2a53d93191da1502be965e2fa2f6b58fcc08f26db0be1512c2cb7d1ce186841a | MATLAB | 1,551 | 40 | function cvx_optval = prod_inv( x, dim, p )
%PROD_INV inverse of the product of a positive vector.
% For a real vector, matrix, or X, PROD_INV(X) returns 1.0 ./ PROD(X) if
% the elements of X are all positive, and +Inf otherwise.
%
% For matrices, PROD_INV(X) is a row vector containing the inverse
% product of... |
4c410166575c212ad3f7b74eae6f3f805a13448c7cf731f4ced9d24da20207bc | MATLAB | 1,551 | 33 | % CVX: Built-in operators and functions supported in CVX models.
%
% The following operators and functions are included with MATLAB but
% have either been verified to work properly within CVX models or have
% been extended with additional code to do so. In many cases, typing
% help cvx/<func>
% whe... |
ef9e0b2b13b1424db1f8383bfc25088b3a34e7ad556acd842b484e71a9ead1cf | MATLAB | 1,551 | 49 | % eeg_getversion() - obtain EEGLAB version number
%
% Usage:
% >> vers = eeg_getversion;
% >> [vers vnum] = eeg_getversion;
%
% Outputs:
% vers = [string] EEGLAB version number
% vnum = [float] numerical value for the version. For example 11.3.2.4b
% is converted to 11.324
%
% Authors: Arnaud De... |
c8d37f9ff7f78afacec8c1d9684c10ce8085da2096f131fff05a997a9c724cfe | MATLAB | 1,552 | 39 | function x = frameit(lab,frmq,frms,K)
% x = frameit(lab,frmq,frms,K)
%
% FRAMEIT
%
% ********** INTERNAL FUNCTION OF SEDUMI **********
%
% See also sedumi
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko
% Copyright (C) 2005 McMaster University, Hamilton, CANADA (since 1.1)
%
% Copyright (C) 200... |
2aa0af5e8615542d78dc103db24bf0347a13cd8d493d09a335596c0ce05f6e66 | MATLAB | 1,553 | 49 | function ea_tonemapct(options, nativenorm)
if ~exist('nativenorm', 'var') || isempty(nativenorm)
nativenorm = 'native';
end
switch nativenorm
case 'native'
if isfile(options.subj.postopAnat.CT.coreg)
ea_dispt('Tonemapping coregistered CT...');
ct = ea_load_nii(options.subj.posto... |
0e7a7abfd31db2082cdaf79b38cf35142405f3c1a98ba06d44747bbdc8c096cc | MATLAB | 1,554 | 45 | function data=extractdatapt(data,t,offset)
% Extract segements of spike times between t(1) and t(2)
% Usage: data=extractdatapt(data,t,offset)
%
% Input:
% data: structural array of spike times for each channel/trial or a single
% array of spike times
% t : time as a 2d vector [t(1) t(2)]
% offset: 0/1 - if 1, ... |
7ada7b4007088a955449c67eafe1fb6a3983284869583580af71331239ea69e3 | MATLAB | 1,555 | 28 | function [rawWaveformsFull, rawWaveformsPeakChan, baselineNoiseAmplitude, baselineNoiseAmplitudeIndex, emptyWaveforms] = ...
loadRawWaveforms(savePath, spikeClusters, spikeWidth, nSpikeChannels, waveformBaselineNoiseWindow)
rawWaveformFolder = dir(fullfile(savePath, 'templates._bc_rawWaveforms_kilosort_format.npy'... |
0ae47c3414635d47dc810aa058e4c7093417cfa3d4cf1fe1fc7fb24fb12fda60 | MATLAB | 1,556 | 68 | function DBRemoveVariables(query)
%DBRemoveVariables - Remove all variables that match given criteria.
%
% Actual removal will require confirmation from the user.
%
% USAGE
%
% DBRemoveVariables(query)
%
% query optional figure list query (WHERE clause; see Example)
%
% SEE
%
% See also DBAddVaria... |
b5f9416dbea9279ff8c76145b03821876b59f701e558831b0717ea531e32cab1 | MATLAB | 1,556 | 45 | function CBIG_ASDf_checkJobStatus(progress_file, num_jobs, lag_time)
% CBIG_ASDf_checkJobStatus(progress_file, num_jobs, lag_time)
%
% This is a helper function that holds off the next jobs until submitted jobs
% are finished. Useful when the next job is dependent on the submitted
% jobs.
%
% Input:
% - progress_fi... |
22fff5349566f255945a1f19a26e702c87dae254417db74606ac5adcadd43151 | MATLAB | 1,557 | 56 | function [] = latex2pdf3d(fname, latex_compiler)
%LATEX2PDF3D Compile LaTeX code to PDF.
%
% usage
% LATEX2PDF3D
% LATEX2PDF3D(fname, latex_compiler)
%
% optional input
% fname = file name string
% latex_compiler = 'xelatex' | PATH_TO_XELATEX
%
% output
% If compilation succeeds, then a PDF fil... |
e4ad15d9fe46b5e49ae419db8bd1dbab45f612cb632cb0b5b0451e424486b265 | MATLAB | 1,557 | 59 | function [oisii,trigid,dii]=reportBiopacImageIntake(bname,imchname,tw,bts)
% Usage ... [ii,trigid]=reportBiopacImageIntake(biopac_matname,imChName,time_extent,sampling_time)
if length(nargin)<4,
ts=0.001;
end;
if length(nargin)<3,
tw=160;
end;
if isempty(imchname),
imchname='MainCam';
end;
verb... |
fac9a0df18486271941a7337c9c7a591676956b3e76c7b916737141c0b07c66b | MATLAB | 1,557 | 70 | % This Matlab script demonstrates the usage of this package.
%
% ----------------------------------------------------------------------
% Matlab tools for "Predicting human gaze beyond pixels," Journal of Vision, 2014
% Juan Xu, Ming Jiang, Shuo Wang, Mohan Kankanhalli, Qi Zhao
%
% Copyright (c) 2014 NUS VIP - Visual I... |
15ee390c4532f1fa0254c9eed377b16491c47864812a9fd21199d963c1c4aa79 | MATLAB | 1,558 | 48 | function map = PhaseMap(positions,phases,varargin)
%PhaseMap - Compute spatial phase map.
%
% Compute phase map (e.g. for a place cell), as well as occupancy and count maps.
%
% USAGE
%
% map = PhaseMap(positions,phases,<options>)
%
% positions position samples
% phases phases in radians
% <... |
471e71776e4cd3ad64ecc22d54c49f5762cf932091d5c8a8cfdeeb88400d321d | MATLAB | 1,558 | 50 | function [cs matchInds scores] = performMatching(grpRes,indRes,matchingFlag)
% [cs matchInds scores] = performMatching(grpRes,indRes,matchingFlag)
%
% NOTE: This function is not exactly the same with Danial Lashikari's
% function performMatching.m, which can be found here:
% http://people.csail.mit.edu/dan... |
edba59da06ba658e0dfc310d14db08e6d75f42fbe9b29eab147d3c10614df839 | MATLAB | 1,558 | 32 | % Extract data from each region in a standardized atlas, averaging over voxels in the region
% Method 1
% pass fmri_data object img into canlab_connectivity_preproc, using the 'extract_roi' keyword and passing in the atlas
img = load_image_set('emotionreg'); % a sample fmri_data object; insert your single-subject 4-D... |
8f8857745bdc00c1b7252998370314921ea4dbe33391418380e467b3c993f117 | MATLAB | 1,560 | 32 | function new_tractset = ea_update_settings(tractset,new_settings)
% Updates the given tractset object based on the
% struct passed into the function
tractset.calcthreshold = new_settings.calcthreshold;
tractset.posvisible = new_settings.posvisible;
tractset.negvisible = new_settings.negvisible;
... |
994360107dcc68a6e174f9bcd8accbd43f94408fff58628775866db515e50514 | MATLAB | 1,560 | 53 | function [nvar, names, types] = nex_info(filename)
% nex_info(filename) -- read and display .nex file info
%
% [nvar, names, types] = nex_info(filename)
%
% INPUT:
% filename - if empty string, will use File Open dialog
% OUTPUT:
% nvar - number of variables in the file
% names - [nvar 64] array of variable names... |
8d37ca3d4e440c84af9825aeb93ddb6267dc3391a0ec15b159f891ed2602f2d4 | MATLAB | 1,561 | 40 | function [biomass_avg] = avgBiomass(BMD,numReplicates)
% This file is a part of the MDSINE program.
%
% MDSINE: Microbial Dynamical Systems INference Engine
% Infers dynamical systems models from microbiome time-series datasets, and
% predicts biologically relevant behaviors of the ecosystems.
% Copyright (C) 2015 ... |
909665bad8fff0434c1849956c43557fb96cde7254eb9ac9c2db962a26f7d869 | MATLAB | 1,561 | 60 | function [ind, tf] = UnderThresholdDetect(A, thresh, min_sep, min_length)
% ind = ThresholdDetect(A, thresh, min_sep, min_length);
% [ind, tf] = ThresholdDetect(A, thresh, min_sep, min_length);
%
% Searches for continuous epochs for which A is under thresh, merges those
% separated by less than min_sep indices, and ret... |
ec08c6cd4ee60be907e06f7c4ca7431056cd51dced00d96c70176c2ca128b3b4 | MATLAB | 1,562 | 73 | function y = cvx_recip( x )
%RECIP Internal cvx version.
%
% Determine the expression types
%
narginchk(1,1);
persistent remap
if isempty( remap ),
remap_1 = cvx_remap( 'constant' ) & ~cvx_remap( 'zero' );
remap_2 = cvx_remap( 'log-valid' ) & ~remap_1;
remap = remap_1 + 2 * remap_2;
end
... |
512e41158e8e800dd9ce377898488e6cbf7ad72c29af28a4b21c09b9104c7ce6 | MATLAB | 1,563 | 39 | % tutorial() - Bring up the ICA / electrophysiology toolbox tutorial
% in a browser window (see docopt.m in the toolbox dir).
% Tutorial URL: http://www.sccn.ucsd.edu/tutorial/
% Download: See http://www.sccn.ucsd.edu/ica.html
%
% Authors: Scott Makeig & Tzyy-Ping Jung, SCCN/INC/U... |
96fe19e5df9ea89c05833b6b0e419ca21b801b408c92c00b2e4e871527d7e1a5 | MATLAB | 1,563 | 47 | function StateIntervals = StateEditorToInts(basepath,basename)
% Takes output from stateeditor and puts it back into StateIntervals. Also
% puts metadata into apppropriate places as well, including saving any
% manual thresholds
% Brendon Watson July 2016
if ~exist('basepath','var')
[~,basename] = fileparts(cd);
... |
a56a275b077c90673150d3038c1e081985f931908d229a29f4e02411861ddf65 | MATLAB | 1,563 | 76 | function fit = coxnet(x,is_sparse,irs,pcs,y,weights,offset,parm,nobs,nvars,...
jd,vp,cl,ne,nx,nlam,flmin,ulam,thresh,isd,maxit,family)
% Internal glmnet function. See also glmnet, cvglmnet.
%time --- column 1
%status --- column 2
ty = y(:,1);
tevent = y(:,2);
if (any(ty <= 0))
error('negative event times enc... |
4553e6e1bdafa86b526874a826b3b9d5f1ea5513c931d24c2cbff84eef5ca67d | MATLAB | 1,564 | 56 | function vol=smoothbinvol(vol,layer)
%
% vol=smoothbinvol(vol,layer)
%
% perform a memory-limited 3D image smoothing
%
% author: Qianqian Fang <fangq at nmr.mgh.harvard.edu>
%
% input:
% vol: a 3D volumetric image to be smoothed
% layer: number of iterations for the smoothing
%
% output:
% vol: the volumetr... |
6cd770b4e970485d9c0a6033c5ab523a43d1e4642fd4d2d6263dc5a98f55844f | MATLAB | 1,564 | 47 | % Solve a floor planning problem given graphs H & V
% Section 8.8.1/2, Example 8.7, Boyd & Vandenberghe "Convex Optimization"
% Joelle Skaf - 11/13/05
% (a figure is generated)
%
% Rectangles aligned with the axes need to be place in the smallest
% possible bounding box. No overlap is allowed. Each rectangle to be plac... |
b5f6069114ddaf6c4c30113a56ee30b983f0494b3174b47a646f6a954365b98e | MATLAB | 1,564 | 52 | function [adfreq, n, ad] = plx_ad_span_v(filename, channel, startCount, endCount)
% plx_ad_span_v(filename, channel): read a span of a/d data from a .plx or .pl2 file
%
% [adfreq, n, ad] = plx_ad_span_v(filename, channel, startCount, endCount)
%
% INPUT:
% filename - if empty string, will use File Open dialog
... |
e5dc42aaee3e208991fee7b7965aaddd29c32fb34eb08b39337e66dcdc0f3e28 | MATLAB | 1,565 | 65 | atl = load_atlas('yeo17networks');
def = select_atlas_subset(atl, {'Default'});
figure; montage(def);
%%
def = select_atlas_subset(atl, {'Default'}, 'flatten');
% figure; hh = addbrain('inflated surfaces')
% surface(def, 'surface_handles', hh);
figure; hh = addbrain('foursurfaces_hcp');
[~, cm] = seaborn_colors(22);
... |
0ddf9fa5c1592b6f31ab2329bd738d2a90d99ddf121865f6deef53c2ad76507a | MATLAB | 1,566 | 44 | function [t_obs, p_val, t_null] = perm_paired_ttest(x, y, nPerm)
% perm_paired_ttest 符号付置換による対応のある t 検定
%
% [t_obs, p_val, t_null] = perm_paired_ttest(x, y, nPerm)
%
% 入力
% x, y : 対応のあるサンプルベクトル（同長ベクトル、または同サイズの行列）
% nPerm : 置換回数（例：5000）
%
% 出力
% t_obs : 観測された t 統計量
% p_val : 両側検定の p 値
% ... |
12d142f93cb2bcbec503e045c65cd7494ad374f185d53bc507d1b18e838153c3 | MATLAB | 1,566 | 53 | %% Optimization of a simple (Rosenbrock) function, with no constraints
% The unconstrained solution is at [1,1]
rosen = @(x) (1-x(1)).^2 + 105*(x(2)-x(1).^2).^2;
% With no constraints, operation simply passes through
% directly to fminsearch. The solution should be [1 1]
xsol = fminsearchbnd(rosen,[3 3])
%% Full lowe... |
5621c788e58dd7535a545b915d0240a69a8dc11445557a502f0214706bd0186c | MATLAB | 1,566 | 38 | function my_fprintf(fid, varargin)
%This function is needed because Matlab R2006B does not support fprintf with
%fid=0, i.e., no output. This is a workaround.
%
%Internal function of SeDuMi.
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko
% Copyright (C) 2006 McMaster University, Hamilton, CANADA... |
7347d978e976c1daf0fc3f0135242538d7dab99472c2a0de49e64f465e06a698 | MATLAB | 1,566 | 58 | function ea_brainsresample(varargin)
% Wrapper to apply BRAINSFit transformation using BRAINSResample
fixedVolume = varargin{1};
movingVolume = varargin{2};
outputVolume = varargin{3};
volumedir = [fileparts(ea_niifileparts(movingVolume)), filesep];
if nargin >= 4
affine = varargin{4};
else
% determine the a... |
c329bc4b2a513bd51afd67d824324f17a8294bd991ae8c5ec0a52417d5af2078 | MATLAB | 1,566 | 58 | function score = ea_discfibers_predict(atlas, groupAnalysis, improvement, mode, selection, side, posneg)
if isfolder(groupAnalysis)
load(ea_getGroupAnalysisFile(groupAnalysis), 'M');
elseif isfile(groupAnalysis)
load(groupAnalysis, 'M');
end
if ~exist('mode', 'var') || isempty(mode)
mode = 'bin';
end
if ... |
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