sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
6bae2d1dddf28079e42ee127acd853f5c58292847661475e9466cbb4eb0677a3 | MATLAB | 1,619 | 48 | % std_reset() - Remove all preloaded measures from STUDY
%
% Usage:
% >> STUDY = std_reset(STUDY);
%
% Inputs:
% STUDY - EEGLAB STUDY structure
%
% Outputs:
% STUDY - EEGLAB STUDY structure
%
% Author: Arnaud Delorme, CERCO/CNRS & SCCN, INC, UCSD, 2009-
% Copyright (C) Arnaud Delorme, arno@sccn.ucsd.edu
%
% This... |
818a379db6660ec2d10c20c377802cc6a48501f0fd598e4659143a68cded4532 | MATLAB | 1,620 | 48 | % Quadratic discrimination (separating ellipsoid)
% Section 8.6.2, Boyd & Vandenberghe "Convex Optimization"
% Original by Lieven Vandenberghe
% Adapted for CVX by Joelle Skaf - 10/16/05
% (a figure is generated)
%
% The goal is to find an ellipsoid that contains all the points
% x_1,...,x_N but none of the points y_1,... |
4ec5de09277f3309993b43c1c2992ea744b7e6c2008961f0f1f2c4ac69b2e6ef | MATLAB | 1,623 | 51 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% angular resolution
dt=pi/40;
t=0:dt:2*pi-dt;
%% parameters of a side-cut fiber
h=100;
r1=20;
r2=25;
a=-1;
b=0;
c=1;
d=-h;
%% key nodes of a side-cut fiber
n... |
b7caded6db67e102a7006e138a67014643bef62d51cfaace7f7ab6fd168e10ba | MATLAB | 1,623 | 46 | function [cp,selectFeature,featureWeight,featureCOH] = innerCOHBinclass(CFCdata,trialtag,fold,featureNumber)
CFCdata = CFCdata';
cp = classperf(trialtag);
crossInd = crossvalind('Kfold',trialtag,fold);
selectFeature = [];
featureWeight = [];
featureCOH = [];
for r = 1:10
testGroup = (crossInd == r);
trainGroup... |
20bd13ae1059503146b409e93cb6b4129c2616e24a94437426a80be3146ecea9 | MATLAB | 1,625 | 43 | function fileList = searchFilesRecursive(baseDir, pattern, maxDepth, currentDepth)
% searchFilesRecursive Searches subdirectories for files matching a regexp pattern up to a certain depth
% fileList = searchFilesRecursive(baseDir, pattern, maxDepth) searches
% baseDir and its subdirectories up to maxDepth levels fo... |
2a8c9e5aa58a2e2eedf51967563617cd0a05e594ef37a3ce67b2c9ea3a2c769a | MATLAB | 1,625 | 51 | function [ params ] = config()
% [ params ] = config()
%
% ----------------------------------------------------------------------
% Matlab tools for "Predicting human gaze beyond pixels," Journal of Vision, 2014
% Juan Xu, Ming Jiang, Shuo Wang, Mohan Kankanhalli, Qi Zhao
%
% Copyright (c) 2014 NUS VIP - Visual Informa... |
cade25c0b7a43bec2c6e380e17d3caf3100549260535d62c5c94d57bebdde00f | MATLAB | 1,625 | 64 | function [Ygreen, Yred] = makeStacks3(folder, pctUpdate)
if(nargin<2)
pctUpdate = [];
flag = false;
else
flag = true;
end
files = jdir(folder,'ChanA_*.tif');
if(~isempty(files))
r = imread(fullfile(folder,files(1).name));
else
... |
a7a80d1ceb4855113e80227a2425a68f71720a7954c45f541d83d54ffdc951e8 | MATLAB | 1,626 | 61 | %isiscalar - Test if parameter is a scalar (integer) satisfying an optional list of tests.
%
% USAGE
%
% test = isiscalar(x,test1,test2,...)
%
% x parameter to test
% test1... optional list of additional tests
%
% EXAMPLES
%
% % Test if x is a scalar (double)
% isiscalar(x)
%
% % ... |
f2c02be90d6a2bf8c1d9a05f22c2227b941a6f0fd034cdc844d9ac7473465ae4 | MATLAB | 1,626 | 87 | function alpha = circ_vmrnd(theta, kappa, n)
% alpha = circ_vmrnd(theta, kappa, n)
% Simulates n random angles from a von Mises distribution, with preferred
% direction thetahat and concentration parameter kappa.
%
% Input:
% [theta preferred direction, default is 0]
% [kappa width, default is 1]
... |
b0eebd82be3ad2709ad01273403dd7b16c0821d4025c4b0e10babf0cb431b56d | MATLAB | 1,627 | 39 | function CBIG_ArealMSHBM_example_single_subject(out_dir)
% CBIG_ArealMSHBM_example_single_subject(out_dir)
%
% This function will call a simplified wrapper to run a single subject parcellation using gMSHBM. This example use
% HCP trained group priors in fsaverage6 space.
% Results of the parcellation will be saved in... |
43141c45834861d5d0e498f5dea7b8349fa8df8596aff6718600be63378bea95 | MATLAB | 1,628 | 41 | function SANDIinput = AnalyseAllDatasets(SANDIinput)
StudyMainFolder = fullfile(SANDIinput.StudyMainFolder,'derivatives','SANDI_analysis');
PreprocMainFolder = fullfile(SANDIinput.StudyMainFolder,'derivatives','preprocessed');
SubList = dir(fullfile(StudyMainFolder,'sub-*'));
SANDIinput.DatasetList = SubList;
for su... |
8662d87fcb03325ad46b082d138569cc3bb3de6bd9cb2e69835f8173a1f1ee53 | MATLAB | 1,628 | 42 | function [nCoords, nDim, nVTMode, c] = plx_vt_interpret(ts, sv);
% plx_vt_interpret - interpret CinePlex video tracking data
%
% [nCoords, nDim, nVTMode, c] = plx_vt_interpret(ts, sv);
%
% INPUT:
% ts - array of timestamps (in seconds) (see plx_event_ts.m)
% sv - array of strobed event values (see plx_event_... |
aec870ca6771f3bf294ab46bc6a2d9b6b0799fb22d9e101fbc7486da3e23434a | MATLAB | 1,628 | 55 | function [peaktimes,winints,peakmags] = FindPeakInWin( data,timestamps,peakthresh,winthresh,minwindur,minseparation )
%[peaktimes,winints,peakmags] = FindPeakInWin(data,timestamps,peakthresh,winthresh,minwindur,minseparation )
%
%
%DLevenstein 2017
%% DEV
% data = -normGAMMA;
% timestamps = gammaLFP.timestamps;
% peakt... |
e0bfbacbfaa77ade96c07ef99d7c447495acf54e67f3edad8a9e2a9da70b7e8b | MATLAB | 1,628 | 55 | function cvx_optval = det_inv( X, p )
%DET_INV determinant of the inverse of an SPD matrix.
% For a square matrix X, DET_INV(X) returns 1.0./DET(X) if X is symmetric
% (real) or Hermitian (complex) and positive defininte, and +Inf otherwise.
%
% This function can be used in many convex optimization problems that... |
eb7349c9af7761cfeb5f841f53e4afde57da8f8b33ac8105b5d8d9dd4540b285 | MATLAB | 1,628 | 61 | % Example 8.3: Bounding correlation coefficients
% Boyd & Vandenberghe "Convex Optimization"
% Joelle Skaf - 10/09/05
%
% Let C be a correlation matrix. Given lower and upper bounds on
% some of the angles (or correlation coeff.), find the maximum and minimum
% possible values of rho_14 by solving 2 SDP's
% m... |
f46362420452eb132891b146961d2e278aa9edf324a8cb38150559c91554ef9c | MATLAB | 1,628 | 61 | %isiscalar - Test if parameter is a scalar (integer) satisfying an optional list of tests.
%
% USAGE
%
% test = isiscalar(x,test1,test2,...)
%
% x parameter to test
% test1... optional list of additional tests
%
% EXAMPLES
%
% % Test if x is a scalar (double)
% isiscalar(x)
%
% % ... |
55cf9caabc22072d5cd7ffb3f095acbf7bca4f6f7657bb34cac050c63e1f2d61 | MATLAB | 1,630 | 71 | function [mp rho_p mu_p] = circ_moment(alpha, w, p, cent, dim)
% [mp cbar sbar] = circ_moment(alpha, w, p, cent, dim)
% Calculates the complex p-th centred or non-centred moment
% of the angular data in angle.
%
% Input:
% alpha sample of angles
% [w weightings in case of binned angle data]
... |
c990292820a74c430505660e5c2fc643a66a03ec580af70f17db52c39affa36a | MATLAB | 1,630 | 67 | function plotPairwiseZReject(out, groupNames)
% plotPairwiseZReject Visualize pairwise rejection matrix as an image
%
% Inputs
% out : struct from pairwiseTwoPropZ (expects fields .reject and .alpha)
% groupNames : 1xG cellstr/string array for tick labels (optional)
% ax : (optional) target axis h... |
f3da389d1a6c200aee48de115677560baca564930f3367b52e0a6e2cecba9c4c | MATLAB | 1,630 | 58 | %% Prepare data harmonisation
%
%
%% Configuration
clear
clc
fprintf(' *** Preparing functional connectivity data for harmonization ...\n')
%Define cohort, session, correlation
Cohort = '2';
Ti... |
261be14a5b8ea3586ebafe231ef717b2ef4f23dcd267ec4f2911c7fce03ef3d1 | MATLAB | 1,631 | 52 | function b = copyfields(a, b, fields)
% COPYFIELDS copies a selection of the fields from one structure to another
%
% Use as
% b = copyfields(a, b, fields);
% which copies the specified fields over from structure a to structure b. Fields that
% are specified but not present will be silently ignored.
%
% See also KEE... |
96f366bd57ea3e4d9b97add4725579173ba187c80ce3b08c8c7f6e75a17ef3c7 | MATLAB | 1,631 | 39 | % GIfTI Class for MATLAB
%
% Geometry format under the Neuroimaging Informatics Technology Initiative
% (NIfTI):
% http://www.nitrc.org/projects/gifti/
% http://nifti.nimh.nih.gov/
%
% This MATLAB class is part of SPM:
% http://www.fil.ion.ucl.ac.uk/spm/
%
... |
c5d27a8fc8ebff009e2cb404771228fa67fecd6a9959a748ef294b06ad124b05 | MATLAB | 1,632 | 33 | % Copyright (C) 2012-2013 Acoustics Research Institute - Austrian Academy of Sciences;
% Licensed under the EUPL, Version 1.1 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "License")
% You may not use this work except in compliance with the License.
% You may ob... |
2aa06511422792f9e8dce718f7f3fb792d50766dc38a30a1cda6d03aad249845 | MATLAB | 1,634 | 50 | function tree = copy(tree,subuid,uid)
% XMLTREE/COPY Copy Method (copy a subtree in another branch)
% FORMAT tree = copy(tree,subuid,uid)
%
% tree - XMLTree object
% subuid - UID of the subtree to copy
% uid - UID of the element where the subtree must be duplicated
%______________________________________... |
b81bddbd40e30123229d06fb13f904ddf020bbf7402a15a71af114265b3cdd95 | MATLAB | 1,635 | 51 | % Periodic Boundary Conditions version
function [plist, alist] = get_cell_shape_LE(V, C, strain)
% GET_CELL_SHAPE_LE Compute perimeter and area of every cell polygon
% under Lees-Edwards (sheared) periodic boundary conditions.
%
% [plist, alist] = GET_CELL_SHAPE_LE(V, C, strain) computes, for each
% cell, the peri... |
f60c6e96a7299e29287a625771c2b7f9a86187bbc1eec9543b289bdba91afbe0 | MATLAB | 1,635 | 59 | function [n, npw, ts, wave] = plx_waves_v(filename, channel, unit)
% plx_waves_v(filename, channel, unit): read waveform data from a .plx or .pl2 file
%
% [n, npw, ts, wave] = plx_waves_v(filename, channel, unit)
%
% INPUT:
% filename - if empty string, will use File Open dialog
% channel - 1-based channel n... |
ce6c5ba481acf774e2fda0df7504cbdb9674f5a44561cae789c6ac97944fbcbb | MATLAB | 1,636 | 41 | %% Contents
% buzcode\analysis\
%% lfp
% bz_Filter: Filter - Filter samples.
% bz_DownsampleLFP: takes a buzcode lfp structure and returns a buzcode lfp structure downsampled
% bz_LFPPowerDist: calculates the power distribution of an LFP signal.
% bz_LFPSpecToExternalVar: calculate... |
0e1b5a4d848e99144b122c72b23cf4e7477808458b0a4e5984a19738ad212bc8 | MATLAB | 1,637 | 28 | function ciftisavereset(cifti, filename, varargin)
%function ciftisavereset(cifti, filename, ...)
% Compatibility wrapper for cifti_write.
periods = find(filename == '.', 2, 'last');
if length(periods) < 2
warning('ciftisavereset wrapper called with non-cifti file extension');
else
... |
08957f9c7d0906b81961de8f7d45554f55db005aed9d98c95e3e5e762046e11b | MATLAB | 1,638 | 40 | % ccc;
clear; clc;
SINGLEPATHs = dir("..\MAT Data\granger result minus base\PE\**\single\**\*.mat");
SINGLEPATHs = unique({SINGLEPATHs.folder})';
% SINGLEPATHs = SINGLEPATHs(contains(SINGLEPATHs, 'Active'));
SINGLEPATHs = SINGLEPATHs(contains(SINGLEPATHs, 'Passive'));
%% Collect data
[~, temp] = cellfun(@(x) mu.getla... |
454ab750efd606d819559d82d91b73c6ea62caef711dd60a22f2de553f9b20f2 | MATLAB | 1,638 | 57 | function s = CumSum(data,stops)
%CumSum - Cumulative sum of elements. Partial sums can also be computed.
%
% USAGE
%
% sum = CumSum(data,stops)
%
% data data to sum
% stops optional logical indices where sum should be restarted
%
% EXAMPLE
%
% % Simple cumulative sum
% s = CumSum([1... |
7f7d5630d435c3b0c100d5272be1813328458fc969b781767320b9ba5314dae5 | MATLAB | 1,638 | 49 | %%*************************************************************************
%% ToeplitzApprox: find the nearest symmetric positive definite Toeplitz
%% matrix to a given symmetric matrix F.
%%
%%
%% max -y(n+1)
%% s.t. T(y(1:n)) + y(n+1)*B >= 0
%% [I 0 ] + sum_{k=1}^n y(k) [0 ... |
da76161ed664492da1b9257b904ccf5c61391f9fafbf7fad53a797ce41eaf4c2 | MATLAB | 1,638 | 47 | function Y = palm_gammainc(X,A,tail)
% Quick patch until the "gammainc" function in Octave is fixed
% http://savannah.gnu.org/bugs/?47800
%
% Inputs and outputs are as in "gammainc", except
% that A must be scalar.
%
% _____________________________________
% Anderson Winkler
% FMRIB / University of Oxford
% Apr/2016... |
7cb6f562cef77c5c43944111ecb86520056ff3f05612ad7eabf9b0efbaee5469 | MATLAB | 1,639 | 50 | function showEyeData(params, subject)
% showEyeData(params, subject)
%
% ----------------------------------------------------------------------
% Matlab tools for "Predicting human gaze beyond pixels," Journal of Vision, 2014
% Juan Xu, Ming Jiang, Shuo Wang, Mohan Kankanhalli, Qi Zhao
%
% Copyright (c) 2014 NUS... |
aea45bce352fe166557fe7999bdb4d9cc0a45ea496a72f3ed4407f06a97a078a | MATLAB | 1,639 | 40 | function z = psdinvjmul(xlab,xfrm, y, K) %#ok
% z = psdinvjmul(xlab,xfrm, y, K)
%
% PSDINVJMUL solves x jmul z = y, with x = XFRM*diag(xlab)*XFRM'
%
% ********** INTERNAL FUNCTION OF SEDUMI **********
%
% See also sedumi
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko
% Copyright (C) 2005 McMas... |
5b94e42a586c69f7fad8b37bf455a6478d6f2b66b71329dbb55e85baf5b3a78e | MATLAB | 1,640 | 32 | function new_tractset = ea_unifiedmapping_update_settings(explorer,new_settings)
% Updates the given tractset object based on the
% struct passed into the function
explorer.calcsettings.calcthreshold = new_settings.calcthreshold;
explorer.posvisible = new_settings.posvisible;
explorer.negvisible = ... |
721e4fdd0ac229246c7e3b50874b85e1481b5bc1f8eef6754ff54c4c647ef006 | MATLAB | 1,640 | 53 | % sample script to create volumetric mesh from
% multiple levelsets of a binary segmented head image.
%
% Author: Qianqian Fang <fangq at nmr.mgh.harvard.edu>
% load full head image (T1 MRI scan)
fprintf(1,'loading binary head image...\n');
for i=1:256
head(:,:,i)=imread('head.tif',i);
end
% load segmented brain... |
eb56882d4899b3e218e41ae6c7743612337788272ce13dc4986a8ebe17cffe99 | MATLAB | 1,640 | 37 | % SOFA API - demo script
% Copyright (C) 2012-2013 Acoustics Research Institute - Austrian Academy of Sciences
% Licensed under the EUPL, Version 1.1 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "License")
% You may not use this work except in compliance with t... |
c2b4f71a3f4ea3ef2383192ab01071b7df8c20c6a569864efe69a2fd34bc2262 | MATLAB | 1,641 | 39 | % written by Yiyuan Han, Essex BCI-NE Lab, 03/09/2020
% getEEGmapCFC: get the map of the channels with CFC as the selected
% features
function CFCmap = getEEGmapCFC(featureLabels,channelPos,electrodes,map)
CFCmap = imread(map);
indices = unique(featureLabels(3,:));
for node = 1:size(channelPos,2)
CFCmap = insertSha... |
713348e2cad5f2f7d2974d9d5694a3042255178d06e66ef7a4402412d6f3818c | MATLAB | 1,642 | 57 | function C = approx_multiway_cut(A,vs)
% APPROX_MULTIWAY_CUT Solve a 2-approximation to the multi-way cut problem
%
% C = approx_multiway_cut(A,vs)
%
% Outputs C, the set of edges cut in a 2-approximation to the multiway cut
% problem. The multiway-cut problem is to find a minimum cost set of edges
% to disconnect al... |
a7c9463831069504f607250b0282f2184aa9fe228768dd5e698b78340bc0f163 | MATLAB | 1,642 | 54 | function cg = ea_colorgradient(steps, color1, color2, color3)
% Generate linear color gradient (used for customized colormap)
if ~exist('steps', 'var') % Input steps
steps = inputdlg('Please enter the number of the steps:','Steps',1,{'256'});
steps = str2double(steps);
end
if ~exist('color1', 'var') % Inpu... |
e3e17c7a554641371afdbed1ecba8fd1800ccf5814c8999daca4ced92974c00a | MATLAB | 1,642 | 40 | % ccc;
clear; clc;
SINGLEPATHs = dir("..\MAT Data\granger result minus base\Prediction\**\single\**\*.mat");
SINGLEPATHs = unique({SINGLEPATHs.folder})';
% SINGLEPATHs = SINGLEPATHs(contains(SINGLEPATHs, 'Active'));
SINGLEPATHs = SINGLEPATHs(contains(SINGLEPATHs, 'Passive'));
%% Collect data
[~, temp] = cellfun(@(x) ... |
6a1619f78a0318eae5e72b77d9529af4c543fec45f0ca38633bcbb0914f574db | MATLAB | 1,643 | 38 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% calculate trace means
function [IndivClustersRAW_means] = CalculateTraceMean(IndivClustersRAW)
fns = fieldnames(IndivClustersRAW);
for k=1:size(fns,1)
% read cluster data from structure
ClusXYZRAW = IndivClustersR... |
6bc86f5e93ba7843f7bf8ab59f96d43e383bf2fca4290c6fed6a43d64743f24e | MATLAB | 1,643 | 50 | %% Setup: Define File and Sheet Info
Wt_E8_fileName = 'Data_1.xlsx';
Wt_E8_sheetName = 'Wt_E8.5_data';
%% Data Import
% Read the full table from the specified sheet
Wt_E8_data = readtable(Wt_E8_fileName, 'Sheet', Wt_E8_sheetName);
%% Filtering: NMPROI == 1 and Marker Positivity
% Subset for NMP cells only
Wt_E8_datan... |
a6977f60ddb05d9693f455e33fdf154d45d7aaa0edb728d5089437783505f2a9 | MATLAB | 1,643 | 52 | function Mset = palm_msetread(fname)
% Read a .mset file, i.e. a file containing
% multiple matrices (2D arrays)
%
% Mset = palm_msetread(filename)
%
% filename : File name.
% Mset : Cell array with the matrices.
%
% _____________________________________
% Anderson M. Winkler
% FMRIB / University of Oxford
% Feb/20... |
bf29cff873488b42d0baa5aa87518a8f9b9aed2d1b6da7a8334f6ea5731c0abd | MATLAB | 1,643 | 44 | function [DPF_760, DPF_850, info] = compute_dpfs(model, epsilon_mm_uM, brain_nodes_idx, wl_idx, dist_ch, nCh)
%COMPUTE_DPFS Channel DPFs from Jacobian-derived total pathlengths.
% [DPF_760, DPF_850, info] = nirsproc.compute_dpfs(model, epsilon_mm_uM, brain_nodes_idx, wl_idx, dist_ch, nCh)
arguments
model stru... |
a4e0d9f07b67628cbf80f961a1c579348f0ff6b28865f2477e231504db2d039d | MATLAB | 1,644 | 52 | function ea_crop_nii_bb(input, bbox, output)
% Crops nifti to a specific bounding-box.
arguments
input {mustBeFile}
bbox {mustBeNumeric} % in mm
output {mustBeTextScalar} = ''
end
% Validate bbox size
if ~isequal(size(bbox), [2 3])
ea_cprintf('CmdWinErrors', 'Wrong bounding box size! Should be 2x... |
f50349eabc7a574fd6b9f53419892c2d879914098d0a5f9e15442e51ba24fd68 | MATLAB | 1,644 | 46 | classdef HButtonBox < uix.HButtonBox
%uiextras.HButtonBox Arrange buttons horizontally in a single row
%
% obj = uiextras.HButtonBox() is a type of HBox specialised for
% arranging a row of buttons, check-boxes or similar graphical
% elements. All buttons are given equal size and by default a... |
08fc16b7e9657d55c3eee4ceb357b73f7ea1aad578102587e5964ad890e664e4 | MATLAB | 1,646 | 50 |
function [vals inds equal_max_val_inds] = randmax(X)
% The function is the same as the regular max function, but if there are ties in maximum value,
% this function returns a randomly selected best index rather than always choosing
% the index with the smallest value (as would happen if normal max is used). Thi... |
83332d9022db440852162f1d7a14cf67a715d855221e6de8d9b4332eb6a277f9 | MATLAB | 1,646 | 44 | function [Y0] = buildInitialConditionVectorsFromData(T,init_times,concentrations)
% This file is a part of the MDSINE program.
%
% MDSINE: Microbial Dynamical Systems INference Engine
% Infers dynamical systems models from microbiome time-series datasets, and
% predicts biologically relevant behaviors of the ecosyst... |
0b98b5b7c6ccf410791056f481dfbbece2fa74ca0888e742c7e5c144a9114d8f | MATLAB | 1,647 | 46 | classdef VButtonBox < uix.VButtonBox
%uiextras.VButtonBox Arrange buttons vertically in a single column
%
% obj = uiextras.VButtonBox() is a type of VBox specialised for
% arranging a column of buttons, check-boxes or similar graphical
% elements. All buttons are given equal size and by defau... |
f8dd846a746481a529e86ee397ac0360fbaee3ba154ce911a364d751364d6bd5 | MATLAB | 1,647 | 46 | function plotAreaROItSNE(allROIs, areas, colors)
% Plots tSNE coordinates for allROIs, colored by area
% Create plot
fig;
axis square
axis off
alpha = 0.5;
% Get data
allCoords = cat(1,allROIs.tsneCoords);
% Z position, randomized for better visuals for M2, M1 and S1-fl
zCoords = 0.8*rand(size(allCoords,1),1);
zCoor... |
fabb0da3172f3fff2eb4517d174569eaa211a603d9c43a33477a65bca9dcd062 | MATLAB | 1,647 | 56 | %%*******************************************************
%% maxcut: MAXCUT problem.
%%
%% (primal problem) min Tr C*X
%% s.t. diag(X) = b;
%%
%% Here, b = e, C = -(diag(B*e)-B)/4.
%%
%% (dual problem) max b'*y
%% s.t. diag(y) + Z = C.
%%---------... |
48e6f352d5174ac96e13ec5f70c65520d4f60739389457e3b41991eda8b5ae23 | MATLAB | 1,648 | 54 | %%*******************************************************
%% max_kcut: MAX k-CUT problem.
%%
%% (primal problem) min <C,X>
%% s.t. diag(X) = b
%% Xij >= -1/(K-1) for all i ~= j
%% X positive semidefinite
%%
%% Here, b = e, C = -(1-1/K)/2* (diag(B*e)-B).
%%... |
3cd011e5c73989434c690b2bd630a7e90ec83207591a1582015d18db6cd6d05a | MATLAB | 1,649 | 55 | function answer = max_cell(a)
%MAX_CELL maximum of 2D cell or 2D numeric matrix.
% MAX_CELL(A) calculates the maximum of the contents of A,
% provided A is a 2 dimesional numeric matrix or
% a 2 dimensional cell matrix containing a mix of
% 2D cell matrices and 2D numeric matrices, which in
% turn ma... |
d70506675decb25f959baf997839994c83774a7e48508e558aaa26d6a3aa6b9c | MATLAB | 1,649 | 55 | function answer = min_cell(a)
%MIN_CELL minimum of 2D cell or 2D numeric matrix.
% MIN_CELL(A) calculates the minimum of the contents of A,
% provided A is a 2 dimesional numeric matrix or
% a 2 dimensional cell matrix containing a mix of
% 2D cell matrices and 2D numeric matrices, which in
% turn ma... |
469d55a0d8cc1330e614158d67a706f7bae960293038e44290f571d2d90623ab | MATLAB | 1,650 | 56 | %% Figure 5 main
YOURDATAPATH = '';
% Load ROIs and PETHs data
fileList = searchFilesRecursive(YOURDATAPATH, 'allROIs.mat');
load(fullfile(fileList.folder, fileList.name))
load('allenDorsalMap.mat');
% Using only cue-modulated henceforth
allROIs = allROIs([allROIs.modCue] == 1);
% Params
smoothSD = 0.15;
color = [0,1,... |
28d8367829b6951601dc4953e04437a85cb5c280a49c27868a5bdfdf7c6fd4a7 | MATLAB | 1,651 | 44 | function tdetx = tdet(x,K)
% tdetx = tdet(x,K)
%
% TDET Computes twice determinant for Lorentz block
%
% ********** INTERNAL FUNCTION OF SEDUMI **********
%
% See also sedumi
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko
% Copyright (C) 2005 McMaster University, Hamilton, CANADA (since 1.1)
... |
38323b61d77bcc78e084c4b483f1f5a112e8bc7f83f20b3edf6ace149dd5666c | MATLAB | 1,652 | 39 | function y = huber( x, varargin )
%HUBER Huber penalty function.
% HUBER(X) computes the Huber penalty function
%
% HUBER(X) = |X|^2 if |X|<=1,
% 2|X|-1 if |X|>=1.
%
% HUBER(X,M) is the Huber penalty function of halfwidth M, M.^2.*HUBER(X./M).
% M must be real and positive.
%
% HUB... |
67ec9610be195c6c8e9619482bcafb144a448e672b97122f300076845cc4dfcc | MATLAB | 1,652 | 58 | n = 10;
%% ---- Linear System ----
figure; hold on;
x1 = 1:size(linearSystem_CM,1);
h1 = plot_with_shade(x1, linearSystem_CM(:,1), linearSystem_CM(:,2)/sqrt(n), [0 0 0], '-');
h2 = plot_with_shade(x1, linearSystem_PM(:,1), linearSystem_PM(:,2)/sqrt(n), [0.3 0.3 0.3], '-.');
h3 = plot_with_shade(x1, linearSystem_CU(:... |
9a47613f78f166b8881bfc63e7edc4eb15e5e39e6ce3262f876d078a50b93f35 | MATLAB | 1,652 | 47 | % cc = getCorrcoef(I1,I2,c1,c2)
% ---------------------------------------
%
% Return the normalized correlation coefficient expressed in Fourier space
%
% Inputs:
% I1 Complex Fourier transfom of image 1
% I2 Complex Fourier transfom of image 2
%
% Outputs:
% cc Normalized cross-correlation... |
b0cfb841367bdc43e7d595cbd791628ae687c8ff951aaf291d6cb1d368b424b9 | MATLAB | 1,652 | 87 | function alpha = circ_vmrnd(theta, kappa, n)
% alpha = circ_vmrnd(theta, kappa, n)
% Simulates n random angles from a von Mises distribution, with preferred
% direction thetahat and concentration parameter kappa.
%
% Input:
% [theta preferred direction, default is 0]
% [kappa width, default is 1]
... |
73ac784215aac9272db6e785b338f309cb0c49ec8a8a69a8d161b771a01fe8e9 | MATLAB | 1,653 | 46 | % x = blk2vec(X,nL)
%
% Converts a block diagonal matrix into a vector.
%
% ********** INTERNAL FUNCTION OF FROMPACK **********
function x = blk2vec(X,nL)
%
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko
% Copyright (C) 2005 McMaster University, Hamilton, CANADA (since 1.1)
%
% Copyright (C)... |
cdd86fb80e10069fb87b8eede596f30671ab86b07d68f01369fe2f468087ab1a | MATLAB | 1,653 | 44 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% SORTING %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
load spikes2
%% The following commands run the Fee algorithm
spikes = ss_dejitter(spikes);
spikes = ss_outliers(spikes);
spikes = ss_kmeans(spikes);
spikes = ss_energy(spikes);
spikes = ss_aggregate(spikes);
%% The following commands merge/spl... |
b3b083f4d8e5a3d9ea9769a2c6dc8e4f54cb2c02ad072db71303f293a76f409d | MATLAB | 1,655 | 46 | function TtrfAnmlWithDprime = tuningQualityToTtrfAnml(TtrfAnml)
boots = 1000; %add to params eventually?
dPrime = cell(size(TtrfAnml,1),1);
for aNo = 1:size(TtrfAnml,1)
[~,BFidx] = ismember(TtrfAnml.BFuDB{aNo},TtrfAnml.freqList{aNo});
%This looks one dB lvl below at BF freq, and above and below... |
faf8d0ac89eb70eba36d433a0a5d3003be4b516203d5131ed0a484b155b8d372 | MATLAB | 1,655 | 45 | function bfInitLogging(varargin)
% BFINITLOGGING initializes the Bio-Formats logging system
%
% bfInitLogging() initializes the logging system at WARN level by default.
%
% bfInitLogging(level) sets the logging level to use when initializing
% the logging system
%
% Examples
%
% bfInitLogging();
% bfInitLog... |
2e09137d18a19fbf1a49b559399c681964b02c4ae9dbff18750dbf7d5a2d85de | MATLAB | 1,656 | 39 | classdef CBIG_MSHBM_unit_test < matlab.unittest.TestCase
% Written by Ru(by) Kong and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
methods (Test)
function test_example(testCase)
% create output folder
CBIG_CODE_DIR = getenv('CBIG_CODE_DIR');
... |
5c3b7568e243c1bf0fde1d6ad9fba799947d062994e32ce81252814388482163 | MATLAB | 1,656 | 56 | function [ events,filename ] = bz_LoadEvents(basePath,eventsName)
%[ events ] = bz_LoadEvents(basePath,eventsName) function for
%loading events.mat files. events.mat files are saved as...
% datasetPath/baseName/baseName.eventsName.events.mat
%
%eventsName can be the name of a events.mat file, If empty, prompts the user... |
f4778beecb9c82f559ad637bdc9fd1090df1fbffa5a70217e8a1e5cbc8aac159 | MATLAB | 1,656 | 41 | function [res] = plx_test_bad_parameters()
% trying all functions with invalid file name
res.allTestsPassed = 1;
res=VerifyError('[a,b,c,d,e] = plx_ad(1, 1);', res);
res=VerifyError('[a,b] = plx_ad_chanmap(1);', res);
res=VerifyError('[a,b,c,d] = plx_ad_gap_info(0, 1);', res);
res=VerifyError('[a,b,c] = pl... |
da0a7db4bf65573380395a02420719db6f0c47cc29e2de1d4da50fb139126de4 | MATLAB | 1,658 | 56 | function b = renamefields(a, old, new)
% RENAMEFIELDS renames a selection of the fields in a structure
%
% Use as
% b = renamefields(a, old, new);
% which renames the fields with the old name to the new name. Fields that
% are specified but not present will be silently ignored.
%
% See also COPYFIELDS, KEEPFIELDS, R... |
99e4989e313a0a129e802ca01eacd4db4f228a765810abc52050b711d2db8969 | MATLAB | 1,659 | 66 | function baseline = CBIG_hypoTest_2t(betas, stats)
% baseline = CBIG_hypoTest_2t(betas, stats)
%
% Written by CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
baseline = zeros(3, 3);
%% AD
fprintf('\n--------------------------------- AD ---------------------------------\n\n');
%... |
2869efa8c7aae6ff2ecbbefbca0c5acebca587b745c87022fdf298dc792dfb89 | MATLAB | 1,660 | 60 | function trial = trialbytrial(headpath,fileexpnum,imskip,expskip,deltamode,FrameRate)
myfields = {'template';'trtype';'fluordata';'redfluor'}; %;'processedfluor';'processedred'}; ?
for i = 1:numel(myfields)
trial.(myfields{i}) = [];
end
% redtemplate={};
cd(headpath); %'D:\TWO-PHOTON IMAGING\Metadata'... |
2afca70e90ca30decfb75b451fe0da370736985768822c4057752bf12ac94d95 | MATLAB | 1,660 | 37 | function [cxitem,cxmenu] = find_uimenu(parent, tag, label, callback)
%FIND_UIMENU Finds/creates an item in a UIcontextmenu.
% HITEM = FIND_UIMENU(PARENT,TAG) searches the UIcontextmenu (if any)
% associated with the object PARENT for a menu item with tag TAG. If
% such a menu item exists, its handle is re... |
66709f77beb5c32db10b11137f29892d0f46b88ac2b032a053878d6b96b786b1 | MATLAB | 1,660 | 40 | function y = invcholfac(u,K, perm) %#ok
% y = invcholfac(u,K, perm)
%
% INVCHOLFAC Computes y(perm,perm) = u' * u, with u upper triangular.
%
% ******************** INTERNAL FUNCTION OF SEDUMI ********************
%
% See also sedumi, getada3
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko
% Cop... |
09c3c2e4288cf17f38f6f459b759b7de3a457a443fc08a0e1878a89327ce4a9c | MATLAB | 1,661 | 33 | function ciftisave(cifti, filename, varargin)
%function ciftisave(cifti, filename, ...)
% Compatibility wrapper for cifti_write.
if ~isfield(cifti, 'diminfo')
error('cifti structure has no diminfo field, maybe use the old ciftisave code instead?');
end
tic;
if length(size(cifti.cdata))... |
638d9757136db8bb0d0b61ea141ac0343e33d628c60e62a278c5b58acfa14bd7 | MATLAB | 1,661 | 56 | %isdmatrix - Test if parameter is a matrix of doubles (>= 2 columns).
%
% USAGE
%
% test = isdmatrix(x,test1,test2,...)
%
% x parameter to test
% test1... optional list of additional tests
%
% EXAMPLES
%
% % Test if x is a matrix of doubles
% isdmatrix(x)
%
% % Test if x is a matr... |
67cbf4f866c05cc42ec50bd781ae3200ba7fe00fb9510b40d61b3b2bddf8c2c3 | MATLAB | 1,661 | 77 | function [p,idx]=ea_isosignificance(varargin)
% inputs: values at coordinates, threshold, max dist
vizz=0;
XYZV=varargin{1};
% clear NAN vars:
XYZV(isnan(XYZV(:,4)),:)=[];
XYZV=zscore(XYZV);
try
thresh=varargin{2}; % standard deviation
catch
thresh=1.5;
end
try
mdist=mean(ea_pdist(XYZV(:,1:3)))*varargin{3}... |
aa81944296de69b479f09150d1786c67919968a5633f7b0fedfc69a347dec99e | MATLAB | 1,661 | 48 | function copydata2targetwithT1(PGout,ROIdirs,IMGdirs,T1dirs,namelist)
for i = 1:length(namelist)
[pth1 fil1 ext1] = fileparts(IMGdirs{i});
[pth2 fil2 ext2] = fileparts(ROIdirs{i});
[pth3 fil3 ext3] = fileparts(T1dirs{i});
Outdirs = [PGout,filesep,namelist{i},filesep];
mkdir(Outdirs);
if strcmp(e... |
a650062c4cdcf0a05f665cbf0aa7a142dda72b0c007da7439ce5484cc7817fae | MATLAB | 1,662 | 63 | %% Example 1 of applying author topic model (AT)
%
% This example shows how to run the AT Gibbs sampler on a small dataset to
% extract a set of topics. This code will produce a single |WP| and |AT| count matrix
% and will show the most likely words and authors per topic. It also writes the results
% to a file
... |
b176445630e0e39fed3f2a4cd697c74827fa5adeccb8adcfb67693ff33b8ad89 | MATLAB | 1,662 | 48 | %% bombcell: Methods Text Generation
% This script demonstrates how to automatically generate a methods section
% paragraph for a scientific paper, based on the parameters used to run
% bombcell
%% 1. Generate methods text from default parameters
% If you just want to quickly generate the text with default BombCell
% ... |
4f0ea7b6ba69e726d864510caaa9913942fb0279b5be7b9f096f4d97dd461fd5 | MATLAB | 1,663 | 42 | function y = sqrtinv(q,vlab,K) %#ok
% y = sqrtinv(q,vlab,K)
%
% SQRTINV Computes for PSD-cone, y = (Q / diag(sqrt(vlab)))', so that
% Y'*Y = inv(Q * diag(vlab) * Q').
%
% ********** INTERNAL FUNCTION OF SEDUMI **********
%
% See also sedumi
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko
% Co... |
6ada5b23a0fb4eac0044869e7b7d1437276ff60b80f74af82275bf8aee94b6ec | MATLAB | 1,663 | 44 | function [vatlist,FilesExist] = ea_discfibers_getlattice(obj)
% Return list of VATs
numPatient = length(obj.allpatients);
vatlist = cell(numPatient,2);
FilesExist = zeros(numPatient,2); % no sense to check for mirrored here
disp('Check for 4-D niftis...')
for sub=1:numPatient
[~,subj_tag,~] = fileparts(obj.M.pat... |
a99f0502585a93faa968babc47542b91c998e8c7a10996d380c5ad9c0ea74318 | MATLAB | 1,663 | 50 | function computeFixationMaps(params)
% computeFixationMaps(params)
%
% ----------------------------------------------------------------------
% Matlab tools for "Predicting human gaze beyond pixels," Journal of Vision, 2014
% Juan Xu, Ming Jiang, Shuo Wang, Mohan Kankanhalli, Qi Zhao
%
% Copyright (c) 2014 NUS V... |
01b5230fa43948c17d092b9bf50b101005b60927438b091a586745f22e64a093 | MATLAB | 1,664 | 57 | function [IIM JJM deltaI Iabs] = AutoFeature_detection(im, sigma, quant, plot_flag)
% a function of particle detection. Use Delaunay triangulation to
% estimate local background intensity and t-test to determine true particles.
% Inputs:
% im: an image,
% sigma: level of gaussian smoothing on the raw image
% quant: q... |
21420fa98caba55f835b2ebc4f0b11955bf321b21a00798193d79ee86f8d70b3 | MATLAB | 1,664 | 69 | function active_lfp_ind = ChooseActiveLFP(root)
% active_lfp_ind = ChooseActive(root)
for k = 1:length(root.b_lfp)
pr(k) = calc_spectrum(root.b_lfp(k));
end
[~, active_lfp_ind] = max(pr);
end
function power_ratio = calc_spectrum(lfp)
import CMBHOME.Utils.*
... |
635ed9d72599531f1c3f884188807af1c3df7d5756bf98c83eac8b5b31e91f30 | MATLAB | 1,664 | 62 | addpath bva-io-master/
addpath (genpath('eeglab2022.1/'));
eeglab
load("dataset_ds005284.mat");
selected_channels = {'C3','C4','CZ','PZ'};
aveERP = zeros(length(selected_channels),300);
for figi=1:length(selected_channels)
for i=1:size(data,2)
disp (num2str(i))
EEG = data{i};
EEG = pop_... |
86a923c61f5b0d28d1cdf40c6c1a1610bf09dee5fde0ec4439775e0e258c536a | MATLAB | 1,665 | 66 | function baseline = CBIG_hypoTest_2t(betas, stats)
% baseline = CBIG_hypoTest_2t(betas, stats)
%
% Written by CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
baseline = zeros(3, 3);
%% AD
fprintf('\n--------------------------------- AD ---------------------------------\n\n');
%... |
8e075dead4caecb7948b0410392d461b10d3259b9f8d1be20eb5f2cc203501f2 | MATLAB | 1,665 | 59 | function [ spiketimes_jitt ] = JitterSpiketimes(spiketimes,jitterwin,varargin)
%[ spiketimes ] = JitterSpiketimes(spiketimes,jitterwin) jitters spiketimes
%of all cells within a designated window.
%
%INPUT
% spiketimes {Ncells} cell array of [Nspikes] vectors of spiketimes for
% each cell (seconds)
% ... |
ed94d4222423ec03c14def623a5bcc046bd54a206c2c1e23ec652fb7dca71aed | MATLAB | 1,665 | 47 | function obj=set_order_options(obj,varargin)
% set_order_options() Set ordering options for categorical
% variables
%
% Ordering options are available for 'x', 'color', 'marker',
% 'size', 'linestyle', 'row', 'column', 'lightness'
% For each variable, the option is provided with a 'name',
% value pair. Example for sett... |
1499e9c378188a6489cecd5eec449cd0ffaa2a3041f89a52af3cf5984cac71a4 | MATLAB | 1,666 | 32 | function [tapers,eigs]=dpsschk(tapers,N,Fs)
% Helper function to calculate tapers and, if precalculated tapers are supplied,
% to check that they (the precalculated tapers) the same length in time as
% the time series being studied. The length of the time series is specified
% as the second input argument N. Thus if p... |
33cc108fd3274aafb9417cc00df5409d21d4e3353a779e02e036abbb39791a46 | MATLAB | 1,666 | 41 | function rid = CBIG_select_predementedGrp(rid_dx, grpName)
% rid = CBIG_select_predementedGrp(rid_dx, grpName)
% Possible values: ad_188 mci_394 a+_mci_147 converter_mci_198 a+_hc_43 a+_hc&mci_190
%
% Written by CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
switch grpName
ca... |
673b160f995ac33219ff1208decc77eadb63bcc569e80247b2eeae160e3e2626 | MATLAB | 1,666 | 41 | function y = bwdpr1(Lden, b) %#ok
% y = bwdpr1(Lden, b)
%
% BWDPR1 Solves "PROD_k L(pk,betak)' * y = b", where
% L(p,beta) = eye(n) + tril(p*beta',-1).
%
% ********** INTERNAL FUNCTION OF SEDUMI **********
%
% See also sedumi, dpr1fact, fwdpr1
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko... |
6f968e371ad43a5e2b42d60465f82ecc85b95371db76df4e8f50cd31d9bd5e06 | MATLAB | 1,667 | 41 | function varargout = nifti_stats(varargin)
% Conversion among various statistics
% FORMAT P = nifti_stats(VAL,CODE,OPT,PARAM)
% CODE can be one of
% 'CORREL' 'TTEST' 'FTEST' 'ZSCORE'
% 'CHISQ' 'BETA' 'BINOM' 'GAMMA'
% 'POISSON' 'NORMAL' 'FTEST_NONC' 'CHISQ_NON... |
678eeb3c3f222bc722669a3be3ae12ad43132870d4b7f96c702c717c2c221ff7 | MATLAB | 1,668 | 40 | function [u,perm,gjc,g] = urotorder(u,K, maxu,permIN) %#ok
% [u,perm,gjc,g] = urotorder(u,K, maxu,permIN)
%
% UROTORDER Stable reORDERing of triu U-factor by Givens ROTations.
%
% ********** INTERNAL FUNCTION OF SEDUMI **********
%
% See also sedumi
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Roman... |
acf61110455838151ea6aea2ec06f83d7071454a5abbdcdefb0524a62b53c22b | MATLAB | 1,668 | 46 | function [vtx,fac] = palm_srfread(filename)
% Read a surface file, in ASCII format.
%
% [vtx,fac] = palm_srfread('filename');
%
% - vtx contains the coordinates (x,y,z), one vertex per row
% - fac contains the indices for the three vertices of each face
%
% The indices for the vertices start at 1, not 0.
%
% ______... |
e2a1b0866c7d798383d22b10fdf459740159b30685c552788b6c7518f6442a88 | MATLAB | 1,668 | 45 | function [ad] = PL2AdBySource(filename, source, channelInSource)
% PL2AdBySource(filename, source, channelInSource): read all a/d data for the specified channel from a .pl2 file
% returns a/d values in millivolts
%
% examples:
%
% ad = PL2AdBySource(filename, source, channelInSource)
% ad = PL2AdB... |
18221fd35ba052a206236d19e530ded136093e1ef57c10c2e7772c0b131a511a | MATLAB | 1,669 | 61 | % Figure 7.1: Logistic regression
% Section 7.1.1
% Boyd & Vandenberghe, "Convex Optimization"
% Original by Lieven Vandenberghe
% Adapted for CVX by Argyris Zymnis - 01/31/06
%
% We consider a binary random variable y with prob(y=1) = p and
% prob(y=0) = 1-p. We assume that that y depends on a vector of
% explanatory ... |
3744f6e0a3ca50692b92d85fc2e5868e2d07d2cfcfe9d9a50606abbf6d93f50d | MATLAB | 1,669 | 53 | function CBIG_ASDf_CCA_plotBar(score_names, struc_coeff, output_name)
% CBIG_ASDf_CCA_plotBar(score_names, struc_coeff, output_name)
%
% This function plots the CCA behavioral score structure coefficients vs raw behavioral scores as
% bar plot. If output_name is specified, the plot will be saved.
%
% Input:
% - sco... |
6e6c554ece6d6e269dc4671396f2ac453e73aa0cb1ef7ff1180c78090ea3c3b7 | MATLAB | 1,669 | 61 | function Sigmoid = ea_SigmoidFromEfield(varargin)
vizz=0;
% map E-field to sigmoid function
% by Till Dembek
Efield = varargin{1};
if nargin == 1
minEfieldthresh = 0.061; % Astrom et al. 2014, 7.5µm, 1.5V
maxEfieldthresh = 0.351; % Astrom et al. 2014, 2.5µm, 5V
reestimatesteepness = 0;
elseif nargin == 3
... |
d449e0c880b15f9188d442351e29532c4bbedd4ab4e8f08df4bbb22a0beb725d | MATLAB | 1,669 | 43 | function parms = SD_registerPairOfSpheres(fixed_sphere, moving_sphere, SD_atlas, reg_parms)
% SD_registerPairOfSpheres(fixed_sphere, moving_sphere, SD_atlas, parms)
%
% Diffeomorphic registration of 2 spheres.
% Calls SD_registerAtlas2SphereMultiRes by creating a fake atlas using moving_sphere.
%
% Just need to pass ... |
ead670bfa3c7da9681686b056f2944ad00d23113a272d501f21263a743a9013d | MATLAB | 1,669 | 49 | function ff = draw_edges_LE(V, topo, strain, fignum)
% DRAW_EDGES_LE Plot every edge of the tissue network (rather than cell
% polygons), each drawn in a distinct color, under Lees-Edwards sheared
% PBC.
%
% ff = DRAW_EDGES_LE(V, topo, strain, fignum) draws each edge as a
% short line segment from its first vertex... |
31b436fe52b32faee8e99d2245824a22dd45ad72d9300aea43802779f32ab587 | MATLAB | 1,670 | 62 | function valnew=surfdiffuse(node,tri,val,ddt,iter,type1,opt)
%
% valnew=surfdiffuse(node,tri,val,ddt,iter,type1,opt)
%
% apply a smoothing/diffusion process on a surface
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% node: list of nodes of the surface mesh
% tri: triangular element list of the surf... |
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