sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
364cabe09d5e786442864871b1f6fca08710a1dca419dd1a6a7d4e9bb2582d56 | NEURON | 7,213 | 207 | begintemplate SAADR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
08c3275238ed58a1db2f8cdf5479885efe1df1acb7f26b8674efd538c508c3b5 | NEURON | 7,230 | 192 | begintemplate PDEL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
f841a8d29216c76a0e69e88a5c85c5ba3a4f013c2f6cfcbf60dc5fc34f843b0b | NEURON | 7,257 | 193 | begintemplate DB01
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
6831f8ba7fa7121183f5efa70fa6bef90ad682362a65c40a178d3f03a7a40d2f | NEURON | 7,262 | 254 | load_file("subiter.hoc")
proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
// biophys_inhomo()
}
create soma
create dend2
create dend2a
create dend3
create dend4
create dend5
proc topol() {
connect dend2(0), soma(1.0)
connect dend2a(0), dend2(1.0)
connect dend3(0), dend2a(1.0)
... |
68e0a4c2c4cf040be3ba8f0bd93465fe978a2f98a65bc7dfdd36d2e3f2e6b8a0 | NEURON | 7,273 | 190 | begintemplate DB04
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
4c28d798ca1c8eeb58cf69ff5999ff98054c3085207d526961fdd97d916f96e7 | NEURON | 7,301 | 208 | begintemplate DD05
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
f89a9b30e6e2404e54695d30b820d81331f1ceec4d662d7d0fb02401d9ea28af | NEURON | 7,303 | 211 | begintemplate DD06
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
64868518b26c20a170cc46e1c40d4d3ba7f55a5e228f886d04c10864249345e5 | NEURON | 7,308 | 197 | begintemplate AVAR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
cd80d48e253e61ce4e88d7a3a30748fe221306cfd44605cd02d39f7da2e4e37b | NEURON | 7,323 | 193 | begintemplate PDER
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
7349a6b9b967f4be0f18e8fb86b93a472b84b8c198425589a6664ef72d476707 | NEURON | 7,324 | 207 | begintemplate SAADL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
09f164603e2f1ec5b92d32494ef1f120d1948efb38ac805193e087e58fe41e12 | NEURON | 7,329 | 249 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
K_C_1D (Type: Channel mechanism, Model: ChannelML based process)
with parameter... |
12fd794909d860fcc64ca25fa264c50a5587a2e7d8eff7860c5320349f36175f | NEURON | 7,330 | 261 | load_file("subiter.hoc")
proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
// biophys_inhomo()
}
create soma
create dend2
create dend2a
create dend3
create dend4
create dend5
proc topol() {
connect dend2(0), soma(1.0)
connect dend2a(0), dend2(1.0)
connect dend3(0), dend2a(1.0)
... |
01bd311da26862e9f0d69f3dad96103974514fd5d2fddd9b2df586f5e587bd52 | NEURON | 7,331 | 197 | begintemplate AVAL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
78d74758162d115df17af5dd75a8f1cdd7632f5fbe82fe09c4b6f18309f1efde | NEURON | 7,339 | 259 | load_file("subiter.hoc")
proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
// biophys_inhomo()
}
create soma
create dend2
create dend2a
create dend3
create dend4
create dend5
proc topol() {
connect dend2(0), soma(1.0)
connect dend2a(0), dend2(1.0)
connect dend3(0), dend2a(1.0)
... |
4f09b81362744f0337c2b19201679e94dc7733234213022132d9ce1463c54090 | NEURON | 7,353 | 211 | begintemplate DD03
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
00f24b685819f40a35e6a420456a21d78710bfbe9df1b58109fb3fdcdee6a162 | NEURON | 7,356 | 197 | begintemplate AVDL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
85b90327d51cc6a8c0ffe466585e5838ef598629b82edb44ed27ba82d28b41ef | NEURON | 7,380 | 197 | begintemplate AVDR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
9e9449596494e569dce69537f83c55eeed9e5a8f702479de3a0f81a82f30ed7b | NEURON | 7,525 | 211 | begintemplate DD06
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
bbe39b4b2db8ce4cf9c696c9f21b722cf297905a9db2f72f66fdc4632c96b079 | NEURON | 7,570 | 159 | module github.com/replicate/cog
go 1.26
require (
github.com/anaskhan96/soup v1.2.5
github.com/containerd/errdefs v1.0.0
github.com/creack/pty v1.1.24
github.com/docker/cli v29.5.2+incompatible
github.com/docker/docker v28.5.2+incompatible
github.com/docker/go-connections v0.6.0
github.com/getkin/kin-openapi v... |
8dedd0842920c48c23e1d93cfa97924ba7f46c106d5a111ddfcfcbb234cdbb6a | NEURON | 7,626 | 195 | begintemplate AVFL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
39b4ec2be7de1fc0a588817a7538dd06ec3d89e0513e8ffbcd6e339474d6be4a | NEURON | 7,642 | 211 | begintemplate DD03
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
669f9dd0b66c4d7153e47398055dc27f7cefa74a467c47beb01ef55b1e0f73c6 | NEURON | 7,691 | 207 | begintemplate RID
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon, ... |
38a3154cbbddbac18ba5a6f2af6d3b7f336b9d804dae1f13a0b55c0de33749c9 | NEURON | 7,697 | 196 | begintemplate AVFR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
322b1f0a417985bb861aa1fc2c5c38449ca82efffac00d2c0e40de5ab5ebeb5e | NEURON | 7,711 | 205 | begintemplate RMEV
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
854067d8647efce6fded4d7ae779eb885e5c345e88ec2d7b553a7f9151e35b4f | NEURON | 7,733 | 216 | begintemplate PLML
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
4a8e0bc6740b320c3602849ebc7fbd16d2b7c3d7e9d331a54b08174e1a4eded1 | NEURON | 7,804 | 216 | begintemplate PLMR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
b219dac0a3e3318b7853fd4dd1e7b428997e3e2890d3dcc10f726e6381c20d33 | NEURON | 7,833 | 204 | begintemplate AVKL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
aaaa355d4cda6d585311f5754a41a363f1e9c58da652572637ca582e0577c4db | NEURON | 7,848 | 231 | begintemplate RIBL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
05b8fd2eaedc7a75e768b148f2bcb714e764ce195e0146ec819871eac63f56fa | NEURON | 7,875 | 231 | begintemplate RIBR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
feeefbb8584bd2e3addaff9ff7242c296cbc235453f146b8d33cdf3870243e6d | NEURON | 7,950 | 231 | begintemplate RIBL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
3a3a154b8979fdcb1007e4ef1ada834aa981dc8594d52c0596831b7fd3e700fb | NEURON | 7,952 | 221 | begintemplate DD04
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
1dcf58380fed1e6525182f8a61357fa88046e3d2d04b77e6e19555c5eeab21bc | NEURON | 7,955 | 213 | : Modified 2026-09-24 by Valis Sowilo (github.com/ValisSowilo): removed the duplicate 'RANGE new_seed' and stale VERBATIM nrn_random declarations so this file compiles on NEURON 9. See CHANGES_NEURON9.md.
TITLE AMPA and NMDA receptor with presynaptic short-term plasticity
COMMENT
AMPA and NMDA receptor conduc... |
47515701146526f9019b024acba9f0cc6cc1dff219ca37518901ac471abaa37b | NEURON | 7,977 | 231 | begintemplate RIBR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
8a81458c5f1f15aef33f4336ab610bf01232533cc0b8fb9e233a8cfc37333f32 | NEURON | 8,039 | 227 | begintemplate RIPL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
5cbc233896899b6ac9fa5cc067e1927e0f7deac230f2a81320b23b33eebf2099 | NEURON | 8,042 | 204 | begintemplate AVKR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
561ae53443b0d148389173d47ca505fe6ebdbe068b00513f8560e22c5c4ce588 | NEURON | 8,050 | 205 | begintemplate RMEV
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
944e5f23e97366ffc77354ca374f86cb8c6cfb29e644c5836599063bc3b3c981 | NEURON | 8,087 | 205 | begintemplate PVR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon, ... |
a4de7f7cf860d72c30c5530d534295cd0f4376a1c36a03edd62a74e8b9ba90c8 | NEURON | 8,088 | 227 | begintemplate RIPR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
c6a75a1c4bb8afc394664641d4d41a7755a9df8a3a950c1c52b0acda4cfc6891 | NEURON | 8,189 | 216 | begintemplate AVBR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
ffe60a68f8c820a962309677f10bf29b6a6595b7580141cbe28cf7a8ab847b10 | NEURON | 8,189 | 216 | begintemplate AVBL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
903e27f20f323db2a886e1777dd0b595ed1349df1a88d62a24bdedaf3a23fffe | NEURON | 8,302 | 221 | begintemplate DD04
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
62c87f17623e546d64ce5c34e4086f2eee42af0dc211b80317f92ca816eeeb2b | NEURON | 8,527 | 216 | begintemplate AVBR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
da8ebdc4110c1ede97da16e57534d279e650a3f95898c2e38569c1fc2907504b | NEURON | 8,535 | 211 | // Code Originaly Taken from Aberra et al, JNE 2018 and modified by Chaitanya Goswami
/*
* Procedures for launching desired cell model, scaling diameters/lengths, and adding myelinated axon
* AUTHOR: Aman Aberra, Duke University
* CONTACT: aman.aberra@duke.edu
*/
cell_id = 0 // leave unset until user selects cell
objr... |
56ba6b7fe651b7a90d097db6d18d35c7b166a789fe12a88b8a84fc458a20f13d | NEURON | 8,555 | 216 | begintemplate AVBL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
39de3fc9e7cd91010333cd93ea685246199043cca84caf0e0db54d1a537368e2 | NEURON | 8,729 | 306 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma, dend[5], apic[6]
proc topol() { local i
connect dend(0), soma(0.5)
connect dend[1](0), soma(0.5)
connect dend[2](0), dend[1](1)
connect dend[3](0), dend[2](1)
connect dend[4](0), dend[2](1)
connect apic(0), soma(0.5)
... |
43689cac6122021d490cc2512cc450c20ea69a3dde244b31a36c120e4b13c18b | NEURON | 8,811 | 335 | load_file("subiter.hoc")
proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
// biophys_inhomo()
}
create soma
create dend2
create dend2a
create dend3
create dend4
create dend5
proc topol() {
connect dend2(0), soma(1.0)
connect dend2a(0), dend2(1.0)
connect dend3(0), dend2a(1.0)
... |
bc097b31fff7334870792a341cd238e739225a0b4fbcbbaddceb10799694007e | NEURON | 8,838 | 255 | begintemplate VC05
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
db024ce74888d6a63bcd194372ebfe78f634290327efaea57fd10bf8eac62a6d | NEURON | 8,853 | 255 | begintemplate VC04
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
f31570dad2ce870fbd9534072544c6467f09a1163f49da7cf85c31f9d7137578 | NEURON | 8,875 | 227 | begintemplate SIBVR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
384ff4549fb2dc0e6177f10afb3406a3d04b7619fcae78c9817237bfaef2e8b6 | NEURON | 8,966 | 227 | begintemplate SIBVL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
59249ccf737f0c97f0b291d7f5a501b18b04f4210b9d2ad033d98fa4901e3f51 | NEURON | 9,022 | 290 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
K_A_dist (Type: Channel mechanism, Model: ChannelML based process)
with paramet... |
5a7fc4e07b5dd4612a7d90298eb32fc71aa783ec488f5e49608f9975c39ee1b5 | NEURON | 9,022 | 290 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
K_A_prox (Type: Channel mechanism, Model: ChannelML based process)
with paramet... |
f28ad809b70d01b1121a18017c11c587afab03a5224012d8fdbc5ffdd00bf64b | NEURON | 9,512 | 256 | begintemplate M5
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon, p... |
219c7e579ed6711fbb805b2026cf7c9b1498086d64a951ad6a6aa210e3293fdd | NEURON | 9,542 | 295 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
CaN (Type: Channel mechanism, Model: ChannelML based process)
with parameters: ... |
757be11d2136c9983d6c803bc8fbf03e7ca98cd4cb2778283a035284cfcad9cb | NEURON | 9,551 | 295 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
CaT (Type: Channel mechanism, Model: ChannelML based process)
with parameters: ... |
f601703e056cb8b0f0a6005275378eb56360de47701da8b4e9e3719d5b8aece8 | NEURON | 9,612 | 287 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
CaR (Type: Channel mechanism, Model: ChannelML based process)
with parameters: ... |
1b4914a4873d95d8c31b5a0386169da91bbc639fe3b6700f7cd54e087f882796 | NEURON | 10,011 | 261 | begintemplate FLPL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
4be5df148d19196e923d2afa48be1ac130a2720cc8db06083f643c30a9ec9de1 | NEURON | 10,071 | 261 | begintemplate FLPR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
f1a1120bd028d7ca9f892637dfd55973236b12f1198443cc1a9d24e160e910ef | NEURON | 10,803 | 283 | // Code Taken from Aberra et al, JNE 2018
/* Adapted from interpxyz.hoc:
* $Id: interpxyz.hoc,v 1.2 2005/09/10 23:02:15 ted Exp $
* 2018/05/20 Modified by Aman Aberra
* AUTHOR: Aman Aberra, Duke University
* CONTACT: aman.aberra@duke.edu
*/
// original data, irregularly spaced
objref xx, yy, zz, length
// interpolated... |
96a336d35c0d7ae420d6ad6e621bc4f24e7e1d518209d539b8b1cfd03aa7fc8a | NEURON | 11,120 | 275 | begintemplate VC03
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
0248089ca99e38af52cb9a6185e04ee4a3dbf2e37f80d0ff91c37de2e9d03f57 | NEURON | 11,207 | 259 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
26659f9f64575075834eaed0411a5fef26837c51ae5ed083eaefd6df94e6945a | NEURON | 11,207 | 259 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
28f184ce7a6829bd59de32f7b96ebf03b9d8f24386c589d5a1aa88f886f5988f | NEURON | 11,207 | 259 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
6721d8b6c23d9cdf1d360a5a172203e085f7a1272f5146b0f6a14243162f51e2 | NEURON | 11,207 | 259 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
f5abcadbd6bc6d357023798422cf06ccae1a4123bb898e9cc1aa989bd363ab0f | NEURON | 11,207 | 259 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
1ded3cd85fafba7bed9d350366c3f46140ada5a9a5b5ecee42a4440863eab934 | NEURON | 11,211 | 259 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
3947abc585f25aa249fe49eaab3f42c3ab21e864492d1b1ca90d0e9f329c47e8 | NEURON | 11,211 | 259 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
3e4ecd26db6a9b291f0eb3aa4bb3268a679ff6d27507051fa3662a4050b58d96 | NEURON | 11,211 | 259 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
6a8337cda8406441cc4d97e42809c000ad5b5ffa5b2512d1c96c6b30ba769ebf | NEURON | 11,211 | 259 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
8b77eb129e11902c070389957ed351dacf250339384266838cb035d70fd09bd1 | NEURON | 11,211 | 259 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
9881caf2f06e1830e883ad5259b3c62a1d13716a1fc1a10538f9ced23159f0db | NEURON | 11,995 | 287 | begintemplate PVNR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
67f6cb2ab77d1ea680e901ee0e30efe66581479ead13702001d8f53dc4b3b0b8 | NEURON | 12,901 | 350 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
Na_soma (Type: Channel mechanism, Model: ChannelML based process)
with paramete... |
9549a0f00efd984087642280317618c8b450d0d12cf560fade6e75a1a8e7999e | NEURON | 13,615 | 322 | begintemplate PVNL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
67f7bfb52acbc7bfb3b48682c0627f9a148103da5e29873eab781fd32f1e8453 | NEURON | 14,374 | 375 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
Na_dend (Type: Channel mechanism, Model: ChannelML based process)
with paramete... |
92b989c635d4870ed85a1e1820d4d2ed1715b33358ae9ede7c0256e492cc5b72 | NEURON | 15,587 | 363 | begintemplate I5
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon, p... |
41b0f9c13d0fb161120146191238c4eb3b4b414719a4e15526a85a250820494d | NEURON | 15,837 | 364 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
729961ec82b053a8cb94d607f076680b6c45f9b5d177ad7d0f20d59d03f2f569 | NEURON | 15,837 | 364 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
dfa891aec3ca51893a21009f54a260275ab66e23c15f0ce62fd09639424e1cae | NEURON | 15,837 | 364 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
2a9140d2066e59f87beb6bc7ca4032c48951df1826f598c94790b2dcf7f56554 | NEURON | 15,838 | 364 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
89c804b507ee5df082e1c74ef780d8f096e619d281cddcce9d1c9e3866e3353a | NEURON | 15,838 | 364 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
a0273b61b498da974541bf669cc79e0293c3d365da3335b1c6b78adcac9ff67b | NEURON | 15,838 | 364 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
d8783178c557cdd696003566a0f799e6535f22035cbfb44f72714bdd261b21d2 | NEURON | 15,838 | 364 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
6c0f9f66fd186d3eb69bf7016098ef212d942cb6538d0693edadb7ac3d81cae9 | NEURON | 15,839 | 364 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
ba541aa357780b5c9ac5b74f62ca19016506a6be93ebd662a119d64a4ecba1f4 | NEURON | 15,839 | 364 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
0b32622648c2fdbb6f2723e0774e3d6e23837ce4662cfc5c75eb8fc3c09e8f68 | NEURON | 16,038 | 369 | /* Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ... |
7f72323951fad080f81630d73ef1fd3a78d8f5645ae08c5ace338329ef273fcf | NEURON | 27,121 | 1,212 | //initializing the membrane parameters of the CA1 PC
func lambda_f() { local i, x1, x2, d1, d2, lam
if (n3d() < 2) {
return 1e5*sqrt(diam/(4*PI*$1*Ri*Cm))
}
// above was too inaccurate with large variation in 3d diameter
// so now we use all 3-d points to get a better approximate... |
0012069e34acfbd3f4fdb37cfcede342e80d4e4d31f418c6c7107cfe2a3802ce | NEURON | 29,648 | 619 | // Code Taken from Aberra et al, JNE 2018
/*
* Procedures for generating myelinated axon from original, unmyelinated morphology
* Preserves original geometry, replaces axon with new sections named Myelin, Node, and Unmyelin
* AUTHOR: Aman Aberra, Duke University
* CONTACT: aman.aberra@duke.edu
*/
// input scale facto... |
c578cf3a95bd12eae4a839503476e9504b4b28daf66603ea6789dab4085a3271 | NEURON | 45,828 | 1,283 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma, dend[63]
proc topol() { local i
connect dend(0), soma(0.5)
for i = 1, 3 connect dend[i](0), dend[i-1](1)
connect dend[4](0), dend[2](1)
for i = 5, 6 connect dend[i](0), dend[4](1)
connect dend[7](0), dend[1](1)
for i ... |
6aa6a14b8d237eaa4efeed833788d3304d23cab0f1c573bdfcdf01393ded3cd4 | NEURON | 58,349 | 1,822 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma[1], dend[80]
proc topol() { local i
connect dend(0), soma(1)
for i = 1, 3 connect dend[i](0), dend[i-1](1)
connect dend[4](0), dend[2](1)
connect dend[5](0), dend[1](1)
connect dend[6](0), dend(1)
for i = 7, 8 connect ... |
861483449b2ae188b22b4e7a47769d586188a3e93ea96fbec661947ef6777faa | NEURON | 58,979 | 1,723 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma[1], axon[43], dend[17], apic[17]
proc topol() { local i
connect axon(0), soma(0.5)
for i = 1, 6 connect axon[i](0), axon[i-1](1)
connect axon[7](0), axon[5](1)
connect axon[8](0), axon[4](1)
connect axon[9](0), axon[3](1... |
7a219bb66432d070d21f922ee424b58b0ee142ae922e7a0c6db7bc8785dbbd43 | NEURON | 73,318 | 1,825 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma, apic[19], dend[49]
proc topol() { local i
connect apic(0), soma(0.5)
for i = 1, 2 connect apic[i](0), apic(1)
for i = 3, 4 connect apic[i](0), apic[1](1)
for i = 5, 6 connect apic[i](0), apic[2](1)
for i = 7, 8 connect ... |
7b1cf24822209d645567e11b90aaffa1d6679dbdc2a2e22864e49409d154bb4b | NEURON | 73,318 | 1,825 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma, apic[19], dend[49]
proc topol() { local i
connect apic(0), soma(0.5)
for i = 1, 2 connect apic[i](0), apic(1)
for i = 3, 4 connect apic[i](0), apic[1](1)
for i = 5, 6 connect apic[i](0), apic[2](1)
for i = 7, 8 connect ... |
926aa1371c433c5bd01e78301abaa67e211f6d96409960ce48e8b3ac2cbfcfc8 | NEURON | 78,520 | 2,146 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma, dend[50]
proc topol() { local i
for i = 0, 1 connect dend[i](0), soma(0.5)
for i = 2, 3 connect dend[i](0), dend[i-1](1)
connect dend[4](0), dend[2](1)
connect dend[5](0), dend[1](1)
for i = 6, 7 connect dend[i](0), som... |
9755095a8728b38c1f965727a1555c3f566cc0917fbacbf9063fa62c92e5df43 | NEURON | 87,291 | 2,224 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma, apic[13], dend[72]
proc topol() { local i
connect apic(0), soma(0.5)
for i = 1, 2 connect apic[i](0), apic(1)
for i = 3, 4 connect apic[i](0), apic[1](1)
for i = 5, 6 connect apic[i](0), apic[2](1)
for i = 7, 8 connect ... |
5412db138f3e048f0a2d3710c988a9b5dbb8f76f1a1ddf0dd43faabe69b3a4de | NEURON | 94,669 | 2,520 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma, dend[55]
proc topol() { local i
connect dend(0), soma(0.5)
for i = 1, 2 connect dend[i](0), dend[i-1](1)
connect dend[3](0), dend[1](1)
for i = 4, 5 connect dend[i](0), dend[i-1](1)
connect dend[6](0), dend[4](1)
conn... |
ff4adcfedab9a0afee21259d0cf3c65294daed090da43c91e65ec5fd22601312 | NEURON | 106,111 | 2,637 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma[2], dend[62], apic[19]
proc topol() { local i
connect soma[1](0), soma(1)
connect dend(0), soma(1)
for i = 1, 2 connect dend[i](0), dend(1)
for i = 3, 7 connect dend[i](0), soma[1](0.5)
for i = 8, 9 connect dend[i](0), d... |
f575d7f6fa0dc65110e517fd0c7c42de78e2ade9fb1455df478af28f2c9ad397 | NEURON | 136,918 | 4,313 | /*----------------------------------------------------------------
%W% %G%
j4.txt translated Mon Nov 1 16:56:20 1993 by ntscable 2.0
source file syntax: Douglas 3D
output file syntax: CABLE
soma: diameter = 25 um length = 35 um area = 2747.9 um2
11 primary neurites
87 branches totaling 17667.6 um in length, 52996.2 ... |
9e343e055a6efe2b106c289c1e047fbc032879bf278776c97be52dd030c63083 | NEURON | 139,121 | 4,417 | /*----------------------------------------------------------------
%W% %G%
j4.txt translated Mon Nov 1 16:56:20 1993 by ntscable 2.0
source file syntax: Douglas 3D
output file syntax: CABLE
soma: diameter = 25 um length = 35 um area = 2747.9 um2
11 primary neurites
87 branches totaling 17667.6 um in length, 52996.2 ... |
6b1059bee6b30822a5c94613deffc6dcef2f08824f4c8edca91ff2679aec7267 | NEURON | 157,396 | 4,071 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma, apic[83], dend10[11], dend9[5], dend8[5], dend7[13], dend6[11]
create dend5, dend4[7], dend3[5], dend2[13], dend1[9]
proc topol() { local i
connect apic(0), soma(0.5)
for i = 1, 2 connect apic[i](0), apic(1)
for i = 3, 4 co... |
00364200c467c9fa9f014eb6c9043f8d8ecf268b17cc3af927317d4e5ad1edfb | NEURON | 200,000 | 5,354 | load_file("nrngui.hoc")
proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma, axon[5], dend[22], apic[116]
proc topol() { local i
connect axon(0), soma(0.5)
for i = 1, 2 connect axon[i](0), axon(1)
for i = 3, 4 connect axon[i](0), axon[2](1)
connect dend(0),... |
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