sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
ee4a65ba95f03c923ad2d17e7ff43beb28028372b72a2806fc657eed5a7e2dd7 | Shell | 1,987 | 48 | #! /bin/sh
#
# DO NOT CHANGE: This clears old freesurfer variables if they previously exists
if [ -n "$FREESURFER_HOME" ]; then
$FREESURFER_HOME/bin/clear_fs_env.csh
fi
# PLEASE CHANGE: Please specify location of CBIG repository
export CBIG_CODE_DIR=/data/users/jzchen/storage/CBIG_private
# PLEASE CHANGE: define l... |
db3617fe314f58f13e63465a65bc4577a4b6a6544fb4e691e39a251c2db6c869 | Shell | 1,998 | 23 | # python3 -W ignore scperb.py --model_name CD4T --exclude_celltype CD4T --data pbmc
# python3 -W ignore scperb.py --model_name CD14+Mono --exclude_celltype CD14+Mono --data pbmc
# python3 -W ignore scperb.py --model_name B--exclude_celltype B --data pbmc
# python3 -W ignore scperb.py --model_name CD8T --exclude_celltyp... |
e521b083df154d4b55594d1939b24746903b0e74565430677fbb713771ffc556 | Shell | 1,998 | 57 | #MOLGENIS walltime=05:59:00 mem=10gb ppn=6
#string Project
#string pythonVersion
#string beadArrayVersion
#string bpmFile
#string projectRawTmpDataDir
#list Sample_ID
#string SentrixBarcode_A
#list SentrixPosition_A
#string pipeline
#string callrateDir
#string gapVersion
#string logsDir
#string intermediateDir
#Funct... |
52127bc41ef4dd688b177e235a824d6c765518c4715203257532fafc4d5b5732 | Shell | 2,008 | 39 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
44778682108b783ca291e059aa862f0e371ec3f4b48e43c8c3e2ce15ec279e56 | Shell | 2,014 | 46 | #! /bin/sh
# Last successfully run on Dec. 7, 2018
# Written by CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# DO NOT CHANGE: This clears old freesurfer variables if they previously exists
if [ -n "$FREESURFER_HOME" ]; then
$FREESURFER_HOME/bin/clear_fs_env.csh
fi
# PLEASE CHA... |
ee071d47f5a952eb655f40e68d3d68c9915fd1814cdb4fc7cce952c6691586ba | Shell | 2,022 | 66 |
study=act
# mkdir output/gwas/"$study"/polmm
# create SNPMatrix
# mkdir data/act/SNPMatrix
# ./code/gwas/ordinal/polmm_create_SnpMatrix.R \
# --bim data/act/act_np.bim \
# --out data/act/SNPMatrix/
# phenos=$(cat data/mega/"$study"_np_ord.pheno | \
# cut -d " " -f 3- | \
# awk 'NR == 1{print}')... |
36097b3e484aee611e2ec438ee43fd896a8de1040fe4064e7f853d5bc403bb81 | Shell | 2,029 | 60 | #!/bin/sh
# This function replicates the variance component model results in the GSP dataset shown in Li et al., 2019
# Only two behavioral measures are included: Shipley_Vocab_Raw and Matrix_WAIS
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
########... |
988d6b275ec734bed5c39589d5a0ea23ff9383ae40cedcdda77785e47ee4c68e | Shell | 2,029 | 58 | #! /bin/bash
# Train the model 20 times in parallel
# note: the outputs are crazy, please leave them away
for i in {0..9}
do
echo "python lib/train_meta.py --data_path Dataset/relative_abundance.csv \
--metadata_path Dataset/metadata.csv \
--edge_list output/NetworkInput/genus/EdgeList.csv \
--output output/ \
--c... |
4081cab39becb8aa3d568281dd8e1129463809518163141c776fe81abf0c8191 | Shell | 2,032 | 70 | #!/bin/bash
#########################################################################
# Copyright (c) 2019-~ Beisi Xu && St Jude
# This source code is released for free distribution under the terms of the
# CreativeCommons BY-NC-SA 4.0 International License
#*Author: Beisi Xu < xubeisi [at] gmail DOT com >
# File... |
06bddfac380beee3b5936d98a2db96e710f1051fd5f692a72175c272f89abb43 | Shell | 2,037 | 72 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
96a7325712aa10010533ddca6935543b6a627fc4dd205d81787640dd592cced4 | Shell | 2,040 | 30 | #! user/bin/bash
start=$1
end=$2
export session_id=cookies
module load anaconda/2020-04-tf2
logfiles=(/m/cs/archive/networks-pm/behavioral/smartphone/*.csv.partial)
if [[ -f ${logfiles[0]} ]]; then
echo 'deleting partial files'
rm /m/cs/archive/networks-pm/behavioral/smartphone/*.csv.partial
fi
python3 /m/cs... |
f77aba6bce7cc06eec67887acbbcb57289e210dae5e638b7a6c87b3baed15e00 | Shell | 2,040 | 61 | #==================================================================
# Run SAIGE GWAS for binary variables: hs, microinf, and grossinf
#==================================================================
study=adni
mkdir ./output/gwas/$study/saige/
pheno_file=tmp/"$study"_saige.pheno
Rscript --vanilla ./code/SAIGE/make_... |
cb201e7b5b7655ef4da622d06f69ab589d2536513bbe52ea39665a19ad3a4834 | Shell | 2,041 | 56 | #!/bin/sh
# This function uses variance component model to estimate the explained variance of fluid intelligence score
# (PMAT24_A_CR) in the HCP dataset.
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
########################
# setup for CIRC cluster... |
8e2bd3d3a268e7ffb6135ffb7158b71b6d90ef29e2a47f718e80d5cab428b9af | Shell | 2,043 | 58 | #!/bin/bash -l
export TPU_LOAD_LIBRARY=0
export TPU_NAME=$1
export ZONE=$2
python3 train_model_atac_pretrain.py \
--tpu_name=$1 \
--tpu_zone=$2 \
--wandb_project=$3 \
--wandb_user=$4 \
--wandb_sweep_name="atac_pretraining" \
--gcs_project=$5 \
... |
135a64c382fb7410b500840c403050b43cbb83f0a7b799bbc52c3f6c8cb94979 | Shell | 2,045 | 41 | #!/bin/bash
#Purpose: Create label files in fs6 space - from individual parcellation files
#Inputs: parc2annot annotation files
#Outputs: .label.gii parcellation files
#Written by M. Peterson, Nielsen Brain and Behavior Lab under MIT License 2022
#SET PATHS
HOME=/fslgroup/fslg_spec_networks/compute
CODE_DIR=${HOME}/c... |
c10c812caab5f3e65ecb2c2dbd2a5138a0222397eeea57040cfab2b7c5213eee | Shell | 2,046 | 24 | #$ -N partherit
#$ -cwd
#$ -q multi15.q
#$ -S /bin/bash
# Dyslexia
#/data/workspaces/lag/workspaces/lg-genlang/Working/SCRIPTS/23andMe/clap-beat_dyslexia/pleiotropyevo/ldsc/partherit_baseline.sh /data/clusterfs/lag/users/gokala/beat-dyslexiaevol/data/munged/dyslexia.sumstats.gz neanDepRegions_hg19.sorted /data/cluste... |
5e9c8769cf3426facc58169fe414cfe1a82e54ac6ae4902ec4b7d41f03273c99 | Shell | 2,050 | 64 | #!/bin/bash
## 1. receive arguments from 04rmdup.sub
sample=$1
outdir_staging=$2
conda_pack_squid=$3
job=$4
## 2. configure the conda enviroment
set -e
workdir_pac=$(basename $conda_pack_squid)
ENVNAME=$(basename $conda_pack_squid .tar.gz)
ENVDIR=$ENVNAME
# these lines handle setting up the environment; you shouldn... |
9458d128c1f01286ea1205b507d88a0cf199aae87f8339a699c0df630a362ba0 | Shell | 2,050 | 50 | #!/bin/sh
#SBATCH --account=humbio
#SBATCH --partition=sadacc-long
#SBATCH --nodes=1 --ntasks=40
#SBATCH --time=150:00:00
#SBATCH --job-name=GSEA
#SBATCH --mail-user=stychr009@myuct.ac.za
#SBATCH --mail-type=BEGIN,END,FAIL
#Try on all cell types
#Gene lists ranked by -log(p-value)*log2FoldChange
module load java/j... |
dd13bcd01df90b765d56d64f739828ac605975f96ff40c5ec9342d1e5cca876a | Shell | 2,056 | 24 | #$ -N partherit
#$ -cwd
#$ -q multi15.q
#$ -S /bin/bash
# Dyslexia
#/data/workspaces/lag/workspaces/lg-genlang/Working/SCRIPTS/23andMe/clap-beat_dyslexia/pleiotropyevo/ldsc/partherit_baseline.sh /data/clusterfs/lag/users/gokala/beat-dyslexiaevol/data/munged/dyslexia.sumstats.gz nean_RA_hg19-rinker_et_al.sorted /data/... |
6857331378d3d04825f227ef79c64f24eac4f228b1d0725cc36e259760c67864 | Shell | 2,060 | 61 | #==================================================================
# Run SAIGE GWAS for binary variables: hs, microinf, and grossinf
#==================================================================
study=act
mkdir ./output/gwas/$study/saige/
pheno_file=tmp/"$study"_saige.pheno
Rscript --vanilla ./code/SAIGE/make_p... |
2012189e096e45d71b50a0971c37e75db3117e6781b1717dd6cd35c923051550 | Shell | 2,061 | 69 |
mkdir output/gwas/rosmap/polmm
# create SNPMatrix
mkdir data/rosmap/SNPMatrix
./code/gwas/ordinal/polmm_create_SnpMatrix.R \
--bim data/rosmap/rosmap_np.bim \
--out data/rosmap/SNPMatrix/
phenos=$(cat data/mega/rosmap_np_ord.pheno | \
cut -d " " -f 3- | \
awk 'NR == 1{print}')
for pheno in c... |
ad072f823667e9efb0056d153d2eec3f3896550a3c4b7474ed6ebc7322d66e9a | Shell | 2,064 | 45 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
e5eb31c0b21e1c999999be90d4455a715750fd1d535362509cb8df27b00790ae | Shell | 2,065 | 60 | #!/bin/bash
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to ... |
3ee43d7372b6c336313b928f429a740660dca957652fe2adae292a697a130f6a | Shell | 2,066 | 60 | #==================================================================
# Run SAIGE GWAS for binary variables: hs, microinf, and grossinf
#==================================================================
covars=$(cat ./data/mega/mega_np_pheno_covar.txt | \
cut -d " " -f 6- | \
awk 'BEGIN {FS=" "; OFS =... |
83111c4898f7bd345a5726bcb2722e5ce01bc557358c61eeeb16a17cc8f41883 | Shell | 2,070 | 61 | #==================================================================
# Run SAIGE GWAS for binary variables: hs, microinf, and grossinf
#==================================================================
study=rosmap
mkdir ./output/gwas/$study/saige/
pheno_file=tmp/"$study"_saige.pheno
Rscript --vanilla ./code/SAIGE/mak... |
e0db91bdb0594d6f671502c84641da7abb66018a48e2c79e7335f393bfeda94a | Shell | 2,077 | 60 | #! /bin/sh
# Usage: bash <repo>/esm/scripts/download_weights.sh /path/to/weights/
# re run the command to continue downloading incomplete files.
echo $0
run_dir=$(readlink -f $(dirname $0)) ;
if [[ "$(which aria2c)" == "" ]];then
echo aria2c is required for downloading!
exit 1
fi
for _sh_exec in /bin/sh bash zsh;... |
81fd72f6eadcac7be9d864619dcbb0c0be72030feeb64454dc54259d1908b947 | Shell | 2,081 | 24 | # python3 -W ignore scperb.py --model_name CD4T --exclude_celltype CD4T --data pbmc
# python3 -W ignore scperb.py --model_name CD14+Mono --exclude_celltype CD14+Mono --data pbmc
# python3 -W ignore scperb.py --model_name B --exclude_celltype B --data pbmc
# python3 -W ignore scperb.py --model_name CD8T --exclude_cellty... |
de01bb51d8377e4fb59a111b64ff00943082c9506e93f0240c4f161760e8b8a6 | Shell | 2,083 | 78 | #!/bin/sh
# test Open Babel with CML
# Make sure we know the absolute path of the programs we're trying to
# call, in case the test is called from somewhere else
unset BABEL_LIBDIR
if `env | grep ^builddir > /dev/null 2>&1`; then
BABEL=$builddir/../tools/babel
BABEL_LIBDIR="$builddir/../src/formats/.libs:$build... |
8367f2d46bc2ae4ad9d778ead20a77e6d84dbd45fb5412e31cfc36d1b36fd636 | Shell | 2,084 | 63 | #! /bin/bash
root=/gpfs51/dors2/gpc/JamesBooth/JBooth-Lab/BDL/jinwang/PlausGram_9-10
topnum="250"
subjects_file_path=${root}
subjects_file=scripts/5mvpa/data_info.txt #This should be a txt file with only a list of subject numbers
contrastsname="allsentence_vs_PC"
contrasts="spmT_0017.nii" #This should correspond to my... |
6f54704b675feee200ef478987b437d4b55541fb366362ef5dd1eab569a2a8c6 | Shell | 2,086 | 64 |
# phenos=$(cat data/mega/mega_np_ord.pheno | \
# cut -d " " -f 3- | \
# awk 'NR == 1{print}')
#
# for pheno in $phenos
# do
# null_model=output/gwas/mega/polmm/"$pheno"_null_model.Rds
# ./code/gwas/ordinal/polmm_null_model.R \
# --covar data/mega/mega_np.covar \
# --pheno data/mega/me... |
7ac31d7d2b5a9c28dd8bd8a1ed66cf692a6fbfcaf847cf6abd74210044314c15 | Shell | 2,087 | 80 | #!/bin/bash
inputfolder=$1
outputpath=$2
boxSize=$3
TeraFlyBrains=$4
Vaa3dPath=$5
#multi-thread
threadNum=46
tempfifo="bouton_intensity_temp_fifo"
mkfifo ${tempfifo}
exec 6<>${tempfifo}
rm -f ${tempfifo}
for ((i=1;i<${threadNum};i++))
do
{
echo ;
}
done >&6
for neuron in $(ls $inputfolder/*swc)
do
r... |
808556a72e8980abdd6fa1f22ab236fb1c10ab397e154611a31bf8dfafa937b5 | Shell | 2,093 | 51 | #!/usr/bin/env bash
# Copyright 2017 Google Inc.
# All Rights Reserved.
#
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of... |
a311bb06f31f1ad5f0b4911f1fd4ad6edf08b6d71ff39c4929e6c9775d0ec07a | Shell | 2,093 | 76 | #!/bin/bash
# author : sjn
# date : Dec.2022
set -euox pipefail
# For a background bin size along the genome, calculate the proportion of di-nucleosome footprints
# Numerator: nucleosome footprints overlapping that bin by at least 1 bp that are 220-450 bp in length
# Denominator: nucleosome footprints overlapping... |
fc87bf37b4201d6b9af28984ad16163c172e1ced239ea9e82efe2880b5f9d682 | Shell | 2,116 | 64 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
bd73ee88cec02b5cf75c8ae757bc30e1817f8a640ec8ec62c78aa9318456959f | Shell | 2,122 | 87 | #!/usr/bin/env bash
#
# Copyright Bradley Lowekamp
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0.txt
#
# Unless required by appli... |
c78811778c892500fd4d67150cfe521a47591faec580b33fbb3e51cf0519b36a | Shell | 2,124 | 61 | #==================================================================
# Run SAIGE GWAS for binary variables: hs, microinf, and grossinf
#==================================================================
study=act
mkdir ./output/gwas/$study/saige/
pheno_file=tmp/"$study"_cerad_adj_saige.pheno
Rscript --vanilla ./code/SA... |
0c83fdcf87f2f225f9639f28688e358813f261f9c382681c004b2b7d4455dcbb | Shell | 2,125 | 61 | #!/bin/bash
# Written by Xiuming Zhang and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
###########################################
# Usage and Reading in Parameters
###########################################
# Usage
usage() { echo "
Usage: $0 -g <GMList> -t <affineTmp> -o <ou... |
62471d248888a68da973e8d9c4d35dc8b4f727b6aa2bde3e811b611600b5ee3c | Shell | 2,126 | 47 | #!/usr/bin/env bash
# Copyright 2017 Google Inc.
# All Rights Reserved.
#
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of... |
f993fde588707360858e499afcc241fef9d713246d9ce5e65adaf80991eadde3 | Shell | 2,128 | 48 | #! /bin/sh
# Last successfully run on Aug 1st, 2018
# Written by Nanbo Sun and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# DO NOT CHANGE: This clears old freesurfer variables if they previously exists
if [ -n "$FREESURFER_HOME" ]; then
$FREESURFER_HOME/bin/clear_fs_env.csh
f... |
1806aa795c7861090ecdcb3f64f8751ad4d9ea960cd1e34967b73405dcadc492 | Shell | 2,129 | 51 | #! /bin/sh
# Last successfully run on Jan 12nd, 2018
# Written by CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# DO NOT CHANGE: This clears old freesurfer variables if they previously exist
if [ -n "$FREESURFER_HOME" ]; then
$FREESURFER_HOME/bin/clear_fs_env.csh
fi
# PLEASE CH... |
4976f18c663ea970e0998be7fa05e04a9aadd9ad6d1f4b8f697b6d36e414916c | Shell | 2,129 | 59 | #==================================================================
# Run SAIGE GWAS for binary variables: hs, microinf, and grossinf
#==================================================================
study=rosmap
mkdir ./output/gwas/$study/saige/
pheno_file=tmp/"$study"_cerad_adj_saige.pheno
Rscript --vanilla ./code... |
1d6fad6a9796547febd9030fef257918061f2bac45e0075b7c59d3406752b601 | Shell | 2,135 | 63 | #!/bin/bash
# Function to train the wavelet model
train_wavelet() {
echo "Training Wavelet model with $1 train observations per class, $2 test observations per class, and alignment processing: $3..."
python3 Keras_wav_software.py --train "$1" --test "$2" --alignment "$3"
}
# Function to train the curvelet model
t... |
4065ff5779c8459349d6b33d2e3b20603dad695d9c4963210abd0fb202e4bdf0 | Shell | 2,139 | 24 | #$ -N partherit
#$ -cwd
#$ -q multi15.q
#$ -S /bin/bash
# Dyslexia
#/data/workspaces/lag/workspaces/lg-genlang/Working/SCRIPTS/23andMe/clap-beat_dyslexia/pleiotropyevo/ldsc/partherit_baseline.sh /data/clusterfs/lag/users/gokala/beat-dyslexiaevol/data/munged/dyslexia.sumstats.gz allchr.phyloP46way.primate_lessThanMinu... |
7c97de93dec36555ff3cfd842568343b8391e211f0632c86933742bae915fa75 | Shell | 2,139 | 24 | #$ -N partherit
#$ -cwd
#$ -q multi15.q
#$ -S /bin/bash
# Dyslexia
#/data/workspaces/lag/workspaces/lg-genlang/Working/SCRIPTS/23andMe/clap-beat_dyslexia/pleiotropyevo/ldsc/partherit_baseline.sh /data/clusterfs/lag/users/gokala/beat-dyslexiaevol/data/munged/dyslexia.sumstats.gz allchr.phyloP46way.primate_lessThanMinu... |
4ae2d796f988d6bc49a8405c38ba4f99c9b8b1225ef90b245d51c481e6311623 | Shell | 2,147 | 62 | #!/bin/bash
# Written by Xiuming Zhang and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
###########################################
# Usage and Reading in Parameters
###########################################
# Usage
usage() { echo "
Usage: $0 -b <brainList> -o <outDir> -t <br... |
9acf81f13eb36a03234855e50917d9c966641186359279d27943ac043f2e0ce0 | Shell | 2,155 | 78 | #!/usr/bin/env bash
set -euo pipefail
# Install ColabMDA from GitHub Release assets without cloning the full repository.
#
# Usage:
# bash scripts/install_colabmda_release.sh
# bash scripts/install_colabmda_release.sh <tag> <install_dir>
#
# Examples:
# bash scripts/install_colabmda_release.sh latest /content/co... |
9b8b6f3434a9ff77150895d55f0ac11c1d9833a9bd833dc40ae53bbbf14ebe76 | Shell | 2,156 | 40 | #!/bin/sh
# Fetch the DRAGEN reference outputs needed by concordance.py for a 5-Base sample
# from the BaseSpace "Illumina 5-Base DNA" demo project (id 471431965).
#
# Downloads ONLY the small reference files (not the multi-TB BAM/FASTQ):
# *.CX_report.txt.gz per-CpG methylation report (-> concordance.py meth... |
c428fc1ee0d7abd437cf1086c5b01c5f9e7af8e1b64f8d0c49bc1e2726850b74 | Shell | 2,165 | 30 | #!/bin/bash
cd ../src
main_id=$1
echo START MAIN EXPERIMENT
python3 train_neonatal.py meta.experiment=${main_id}_main_multirun meta.tag=${main_id}_run_01
echo START SINGLE MODALITY EXPERIMENT
python3 train_neonatal.py meta.experiment=${main_id}_np_multirun +experiment=single_mod_np meta.tag=${main_id}_np_01
python3... |
bc058d372228d95e0328e8b443cdf10920778ba45d8b900e4d51c592c81832ba | Shell | 2,166 | 47 | #! /bin/sh
# Last successfully run on May 28th, 2018
# Written by CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# DO NOT CHANGE: This clears old freesurfer variables if they previously exists
if [ -n "$FREESURFER_HOME" ]; then
$FREESURFER_HOME/bin/clear_fs_env.csh
fi
# PLEASE ... |
c266863162a3002ceec866e9e0287bd7359d50a8e8b72c5b2c9f181b34c9a56f | Shell | 2,169 | 45 | #!/bin/bash
# calculate the mean depth of all contigs for correlation-based assignment
## 1. configure the conda enviroment
set -e
ENVDIR=WGS_analysis
. $ENVDIR/bin/activate
## 2. run the patch code
bam_list=bam_list.txt # input table of bam files, with sample name at the begining of each '_' delimited string
genom... |
4a3f4a11c721b807256dd6dddaa3718634d38a5963a77bfcaccd6faee3787472 | Shell | 2,170 | 57 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
fd0dcb805da5e08b38b41db10c3f3a6cd59119e51bb5d504656f4e017e90bdc5 | Shell | 2,172 | 61 | #!/bin/bash
# Written by Xiuming Zhang and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
###########################################
# Usage and Reading in Parameters
###########################################
# Usage
usage() { echo "
Usage: $0 -g <GMList> -t <nonlinTmp> -o <ou... |
5c4e868e2ae37616e9165e4455bd5a0f99f6f1810bccecbbd7ba68e5c75ab08a | Shell | 2,173 | 66 | #!/bin/bash
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to ... |
9c3884e60147a0386a87bc6163b1dbc0bfa63adea2e39c62253be996d3dca959 | Shell | 2,174 | 75 | #!/bin/bash
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to ... |
522b28e70b288b2922ba15668052c47d4fff896dca37e74f478561fe5f04d6d7 | Shell | 2,183 | 58 | #!/bin/bash
#
# This script will extract LDSC genetic correlation
# results from log files.
#
# Gokberk Alagoz - 09.02.2023
#
#############################
munged="/data/workspaces/lag/workspaces/lg-genlang/Working/23andMe/Dyslexia2/Evolution/dys_rhy_pleiotropy/resources/external_sumstats/munged/"
inDir="/data/cluster... |
b27fe4645bf49ae40f78bce38767688af40ff1afc3919e71cd7e717f745b6f19 | Shell | 2,187 | 19 | #UNET
CUDA_VISIBLE_DEVICES=2,3 python -m torch.distributed.launch --nproc_per_node=2 --master_port=1249 train.py --launcher pytorch --max_iter 11 --loss_l1 --net_name UNET --name std8_15_fastmri_UNET --trainset FastMRITrainSet
CUDA_VISIBLE_DEVICES=2,3 python -m torch.distributed.launch --nproc_per_node=2 --master_... |
19be38382c48faae13bd2d1bdc3b024337be740875ac15bd85dad1832df382da | Shell | 2,191 | 24 | #$ -N partherit
#$ -cwd
#$ -q multi15.q
#$ -S /bin/bash
# Dyslexia
#/data/workspaces/lag/workspaces/lg-genlang/Working/SCRIPTS/23andMe/clap-beat_dyslexia/pleiotropyevo/ldsc/partherit_baseline_and_extraAnnot.sh /data/clusterfs/lag/users/gokala/beat-dyslexiaevol/data/munged/dyslexia.sumstats.gz fetal_hge_hg19.merged.so... |
99b43a0ec7ee7dc7296af800b402d7a573d3efbf174c12e5a4701467dee7dbf4 | Shell | 2,201 | 70 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
0f4887e4b823bd29a003759a36f25d5711691d63a9292f5bafa4f01aee2d16a0 | Shell | 2,207 | 41 | #!/bin/bash
#
# Gokberk Alagoz - 19.05.22
#
# This script will subset dyslexia and rhythm summary statistics using
# the list of gw-sig-SNPs in the MA results.
# First download this list from FUMA. #TODO get this list manually with PLINK
##########################
# Variables
SNPs4filtering="/data/clusterfs/lag/users... |
d27908590f2eea8033219f51895490ea7e3c6ffc13233742d10b91f1ae12d4cc | Shell | 2,209 | 70 | ## Sets up the various kappa directories and submit each run
## Usage: bash setupNsubmit.sh template_directory kappa.txt
## k1, k2, k3 are kappa values
## kappa.txt file should not have empty lines on the end of file
###############################################################################
# Help ... |
9f316eb39f38b8944aaa85d78a051d79d99b227c4d83a68f6fa2df815975cdb0 | Shell | 2,210 | 62 | #!/bin/bash
# Written by Minh Nguyen and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
ROOTDIR=`readlink -f $0 | xargs dirname`/../
export PYTHONPATH=$PYTHONPATH:$ROOTDIR
mkdir -p output
echo Generate 20 cross-validation folds
python -m cbig.Nguyen2020.gen_cv_fold \
--spreads... |
a58a0517194f5882d7d12bbb6e598fa6b7e62da5a99ea09dd7f934aa3b1f63b1 | Shell | 2,220 | 48 | #!/usr/bin/env bash
# Copyright 2017 Google Inc.
# All Rights Reserved.
#
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of... |
8d1a66fb028793d258c4b08ccdd709efa71c718d325ada87e16f0e4c6a0c44b0 | Shell | 2,222 | 81 | #!/bin/bash
## 1. receive arguments from 02align_split.sub
sample=$1
read1=$2
read2=$3
genome=$4
job=$5
bwa_index_squid=$6
conda_pack_align_squid=$7
## 2. configure the conda enviroment
set -e
workdir_pac=$(basename $conda_pack_align_squid)
ENVNAME=$(basename $conda_pack_align_squid .tar.gz)
ENVDIR=$ENVNAME
# these... |
15379062b484a78a8965acac8d2244d70ba615543443ff17b3cc11417b79e018 | Shell | 2,223 | 57 | #!/usr/bin/env bash
#
# oxy_idle_gate.sh — block until oxy is idle enough to run a clean benchmark.
# Part of plans/05302026_extractor-fulldata-validation/PLAN.md.
#
# oxy is shared with sibling sessions (coverage2cytosine, alignments, dedup,
# methylation_consistency). A contended box ruins timing AND interferes with
... |
5dc1ab9832707774a9c8d73e90312a2eeb0ce98f3ea9e9fdbd53c7edec397852 | Shell | 2,229 | 49 | #!/usr/bin/env bash
# Copyright 2017 Google Inc.
# All Rights Reserved.
#
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of... |
c272415d86e874e4a807e7af00ea6d0eb6b8683ba5dca18152c3e7853882a341 | Shell | 2,237 | 63 | #!/bin/bash -l
export TPU_LOAD_LIBRARY=0
export TPU_NAME=$1
export ZONE=$2
python3 train_model_rampage_finetune.py \
--tpu_name=$1 \
--tpu_zone=$2 \
--wandb_project=$3 \
--wandb_user=$4 \
--wandb_sweep_name="atac_rampage_paired" \
--gcs_project=$... |
03a89090382006ead3f13abb58daa35db932fe800e5a7e225f9a5a27f2dbc074 | Shell | 2,247 | 70 | #==================================================================
# Run SAIGE GWAS for binary variables: hs, microinf, and grossinf
#==================================================================
mkdir ./output/gwas/adc/saige/
pheno_file=tmp/nacc_saige.pheno
Rscript --vanilla ./code/SAIGE/make_pheno_file.R \
-... |
86d86f3922e4b6b56348c6327e0560703daf895159b2f1cc2eedf50e4537ee90 | Shell | 2,260 | 61 | #! user/bin/bash
date=$1
path=/m/cs/archive/networks-pm/mri/$date;
cd $path
if [ ! -d $path/$date ] ; then
echo "unzipping files..."
for filename in $(find . -name '*.zip');
do
unzip -d "${filename%.zip}" "$filename"
done
fi
for folder in $(find -maxdepth 4 -mindepth 4 -type d );
do
se... |
9b237336b002e72028d10ffafe96694d12937698b1d6d33e391f18edd8fc6469 | Shell | 2,261 | 68 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
1f985958f3c8c1ef746296e8980cee2977ad235bf14e6eda27ae33432455476a | Shell | 2,277 | 68 | #!/bin/sh
# This function uses linear ridge regression to predict fluid intelligence score (PMAT24_A_CR) in the HCP dataset.
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
########################
# setup for CIRC cluster
########################
curr_... |
7a770c47c45f4c1b50959efe7527084c71b9a878df5f95065fcd3937b9b26ac7 | Shell | 2,293 | 90 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
1fdab51831872834d84397245ac1ed48a1204539c569609aebdfa81a652cc86b | Shell | 2,301 | 71 | #!/bin/bash
# Function to kill MLflow UI on exit
# cleanup() {
# echo "Stopping MLflow UI..."
# kill $MLFLOW_PID
# echo "MLflow UI stopped."
# }
# Trap SIGINT and SIGTERM to cleanup properly
# trap cleanup SIGINT SIGTERM
# Start MLflow UI in the background
# mlflow ui &
# MLFLOW_PID=$!
# Capture the cur... |
8a4e85bffa184e503362d1513be4eb9a5a8cf349d9e16cfd31439ae0f1ea36a7 | Shell | 2,302 | 78 | #!/bin/bash
# Run feature selection experiments across a few genes, with selected cancer
# types held out (either partially or completely)
RESULTS_DIR=./02_cancer_type_classification/results/lasso_range
ERRORS_DIR=./lasso_range_errors
# number of features to "preselect" to by mean absolute deviation
# -1 == no prese... |
2f22fd44bb8e0d5b1bfa3ca9baa25448a4989a6da5a41b8343ffc64f83267e8a | Shell | 2,310 | 71 | #!/bin/sh
# This function replicate the linear ridge regression results in the GSP dataset shown in Li et al., 2019
# Only two behavioral measures are included: Shipley_Vocab_Raw and Matrix_WAIS
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
##########... |
085d6dc4c3e602b8b73d8927ab9f5fb22d3fe209013b54a52af303439d11a108 | Shell | 2,311 | 75 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
b764fa865e0556c21d5a29985dc7e725a98d086ad00d2117231b3c7af6dc20ac | Shell | 2,317 | 69 | #!/bin/sh
# This function replicate the kernel ridge regression results in the GSP dataset shown in Li et al., 2019
# Only two behavioral measures are included: Shipley_Vocab_Raw and Matrix_WAIS
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
##########... |
dc53ee3c452f4ede1429e698167d21d2e2077c80ca8276644df5d12119f6cee4 | Shell | 2,331 | 68 | #!/bin/sh
# This function uses kernel ridge regression to predict fluid intelligence score (PMAT24_A_CR) in the HCP dataset.
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
########################
# setup for CIRC cluster
########################
curr_... |
5b99298b7bb6fbf54c9be6506f2b0d1783311976905fd42d0b730ec52f8e5629 | Shell | 2,332 | 41 | #!/bin/bash
# This script will 1) run snp2gene (annotation),
# 2) run gene analysis,
# 3) run gene-set analysis on evo. gene lists.
# Gokberk Alagoz, 11.10.22
##########################
# Set Paths
programs="/home/gokala/programs/"
inDir="/data/workspaces/lag/workspaces/lg-genlang/Working/23andMe/Dyslexia2/... |
e21362b5d8191b34120226b8b151bfb7f47face6843335dd9d652c197b683895 | Shell | 2,348 | 71 | #!/usr/bin/env bash
# Written by Wu Jianxiao and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
#This function projects x, y, z index volumes of a single subject (after being warped into each subject's T1 space) onto the Freesurfer fsaverage surface space, using FreeSurfer's mri_vol... |
ef5257214bfbf8ee109804f4565d0583133149302b3bb34a058b053d06a9d364 | Shell | 2,351 | 70 | #==================================================================
# Run SAIGE GWAS for binary variables: hs, microinf, and grossinf
#==================================================================
mkdir ./output/gwas/adc/saige/
pheno_file=tmp/nacc_cerad_adj_saige.pheno
Rscript --vanilla ./code/SAIGE/make_pheno_fi... |
8cfc3765e37106b173617782cb4a46067aafeb84426acb1ccdb09baf9527e364 | Shell | 2,352 | 85 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
9b74bbdda139b45c3ebb64dbc157aa241e8c1caef6f724038e32ec8173a12bc1 | Shell | 2,354 | 95 | #!/bin/bash
export VFC_BACKENDS="libinterflop_mca.so --mode=mca --precision-binary64=53 --precision-binary32=24"
export LD_PRELOAD=$PWD/../libmath.so
declare -A signature_a
declare -A type_a
signature_a=([univar]="univariate" [bivar]="bivariate" [lgamma_r]="lgamma_r" [sincos]="sincos")
type_a=([float]="binary32" [dou... |
bf9bbc3e072bf1609902e06fd63c7a2946b5448094ea79f7d44933438c157b32 | Shell | 2,366 | 77 | #!/bin/sh
#======================================================================
# FILE: cansmiles_shuffle.sh
# AUTHOR: Craig A. James
# DESCRIPTION:
# Tests SMILES canonicalization. For each SMILES of input:
#
# * Writes the SMILES (repeats it) N times
#
# * Runs the N repeated SMILES through "obabel ... -o smi... |
736b3f4581c46df96884e52f25c3330a7c47595be51477c9663405a5d9a65d38 | Shell | 2,386 | 24 | #$ -N partherit
#$ -cwd
#$ -q multi15.q
#$ -S /bin/bash
# Dyslexia
/data/workspaces/lag/workspaces/lg-genlang/Working/SCRIPTS/23andMe/clap-beat_dyslexia/pleiotropyevo/ldsc/partherit_baseline.sh /data/clusterfs/lag/users/gokala/beat-dyslexiaevol/data/munged/dyslexia.sumstats.gz allchr.phyloP46way.primate_lessThanMinus... |
d565284989b1ca57c5ac15d66e5891e724bfd70951e77430f0922ac80d0989e5 | Shell | 2,386 | 24 | #$ -N partherit
#$ -cwd
#$ -q multi15.q
#$ -S /bin/bash
# Dyslexia
/data/workspaces/lag/workspaces/lg-genlang/Working/SCRIPTS/23andMe/clap-beat_dyslexia/pleiotropyevo/ldsc/partherit_baseline.sh /data/clusterfs/lag/users/gokala/beat-dyslexiaevol/data/munged/dyslexia.sumstats.gz allchr.phyloP46way.primate_lessThanMinus... |
60871374a05b23d9d2e6ccb833936a11b84540596539531669555fe86a0f7353 | Shell | 2,388 | 40 | #!/bin/bash
# Gokberk Alagoz - 11.11.21
# This script will find the overlapping SNPs in clap-beat and
# dyslexia GWAS sumstats and will create subsets with only
# overlapping SNPs for both traits.
# Subset & sort clap-beat sumstats
awk 'NR==FNR{a[$42];next} $19 in a {print $0}' clap_to_beat.merged.1kgenomes_02222019.... |
3c0be30659229ca73fff95ecde8d5d569bcfb7d810851a21d98eecc67b126a8d | Shell | 2,400 | 70 | #!/bin/bash
#########################################################
# Make .annot and .l2 files for LDSC part. heritability
# Download the latest version of bedtools to your local
# directory. Set path to that dir. with:
# export PATH="/home/gokala/programs/bedtools2/bin:$PATH"
# Run this on lux13, ldsc virtual envir... |
ca909a9cbe4db6af402d6fb4e82713e5b99a8c0b824987efba38d78e35a4edf0 | Shell | 2,414 | 30 | ##merge fq.gz files and quality control
for i in RNA-seq/*
cd $i
zcat CL*_1.fq.gz | gzip > merge_1.fq.gz
zcat CL*_2.fq.gz | gzip > merge_2.fq.gz
fastqc -t 8 ./merge_*.fq.gz
cd ..
done
##STAR & RNA-seQC & picardtools:collect sequncing statistic metrics
for i in sample1 sample2 sample3; do /opt/tools/seq-analysis/STAR... |
ce73c978379694781b54ae6ed1c01db30da10a817d857689fb233e2fc0af5a95 | Shell | 2,415 | 65 | #!/bin/bash -l
export TPU_LOAD_LIBRARY=0
export TPU_NAME=$1
export ZONE=$2
python3 train_model_atac_rampage_test.py \
--tpu_name=$1 \
--tpu_zone=$2 \
--wandb_project="atac_rampage_paired_test" \
--wandb_user="njaved" \
--wandb_sweep_name="atac_rampage_paired... |
19ffb915420846469fc43f8dc4ff6d21c9cbf33fc50e986d08e75457835c0dff | Shell | 2,418 | 35 | sigfile="test/mixer/disease.list1"
for trait1 in `cat $sigfile`;do
for i in $(seq 1 20);
do
#if [ ! -f "test/mixer/result/"$trait1".fit.rep"$i".json" ]; then
cmd="python3.8 mixer/mixer-master/precimed/mixer.py fit1 --trait1-file test/cFDR/traitfolder/"$trait1" --out test/mixer/result/"$trait1".fit.rep"$i" --power-curv... |
e69e4f90e53bbb95c979e9f8b1afca3ffecf9c470a310b30924a56a8fb7d5086 | Shell | 2,419 | 29 | # # echo "Saving mesh for mito example..."
python3 main.py mito-preprocess --input-mesh-file /root/shared/gitrepos/smart-comp-sci/meshes/mito1_coarser2_mesh.xml \
--output-mesh-file /root/scratch/write-meshes/mito/meshes/mito_mesh.h5 --input-curv-file /root/shared/gitrepos/smart-comp-sci/meshes/mito1_coarser2_curvature... |
bc5a896f6035bbe778f3db6cd34a3144d28f7922ca4213fa4db93f1977cbf724 | Shell | 2,423 | 25 | phe=0218
for i in $(seq 20 20);do
cmd="python3.8 mixer/mixer-master/precimed/mixer.py fit2 --trait1-file test/cFDR/traitfolder/"$phe".csv_z.csv.gz --trait2-file test/cFDR/traitfolder/MDD2013_noMHC.csv.gz --trait1-params-file test/mixer/result/"$phe".csv_z.csv.gz.fit.rep"$i".json --trait2-params-file test/mixer/result/M... |
6152bafe4d3cfedf4f334f379510fc334041dd51e2db881e262b2eec93fb4a0d | Shell | 2,425 | 72 | #!/bin/bash
# Written by Xiuming Zhang and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
###########################################
# Usage and Reading in Parameters
###########################################
# Usage
usage() { echo "
Usage: $0 -i <imgList> [-n <nameList>] -p <... |
19fb53a0d46dd1f85cfedf238f6a211e3fa9ba3f222e8a0209b4105a92420ddf | Shell | 2,448 | 72 | ###############################################################################
# Help #
################################################################################
Help()
{
# Display Help
echo "Prepare the cafemol input file"
echo
... |
55026f1f1c91c28a42772141dcd73deb3c3ff222a624570b8b1f80e5fabb9fd3 | Shell | 2,448 | 29 | #!/bin/bash
# Written by Jianzhong Chen and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
id=$1
output_dir=$2
FD_th=$3
DV_th=$4
proc_scripts_dir=${CBIG_CODE_DIR}/stable_projects/preprocessing/CBIG_fMRI_Preproc2016
mid_bold=`cat ${output_dir}/${id}/logs/${id}.mid.bold`
nback_bold=... |
ff3c5a69dc104e950787cd4f85c0d0e1193e82a0650389bfec9b724b766ec588 | Shell | 2,449 | 29 | # # echo "Saving mesh for mito example..."
# python3 main.py mito-preprocess --input-mesh-file /root/shared/gitrepos/smart-comp-sci/meshes/mito1_coarser2_mesh.xml \
# --output-mesh-file /root/scratch/write-meshes/mito/meshes/mito_mesh.h5 --input-curv-file /root/shared/gitrepos/smart-comp-sci/meshes/mito1_coarser2_curva... |
4435194ab1f5e58ef76f83b840df6831ceaa5241960e300ec220b6074958c7e7 | Shell | 2,451 | 74 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
469b9d1f2533d9b8c7ddbee8181d418dda17c928ed46d8057bb5ddf412ed08aa | Shell | 2,460 | 62 | #MOLGENIS walltime=05:59:00 mem=8gb ppn=1
#string pythonVersion
#string beadArrayVersion
#string gapVersion
#string bpmFile
#string projectRawTmpDataDir
#string intermediateDir
#string SentrixBarcode_A
#string SentrixPosition_A
#string concordanceInputDir
#string Sample_ID
#string tmpName
#string logsDir
#string Proje... |
12479bedb2cacb507bd6d1cbcffa4a7c988330c66184b664f7c825a5831b3235 | Shell | 2,479 | 90 | #!/bin/bash
set -e
set -u
set -o pipefail
#
# Disable some shellcheck warnings:
# * SC2004: $/${} is unnecessary on arithmetic variables.
# But for consistency we prefer to always use ${} anyway.
# * SC2015: Note that A && B || C is not if-then-else. C may run when A is true.
# We know and use... |
df40211a72643048652f65d085cf2b55f577d91d28c19ca237f1e17f983ae279 | Shell | 2,482 | 75 | #!/usr/bin/env bash
# Written by Wu Jianxiao and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
#This script linearly registers a volume file from its original template's space to its norm.mgz space
###########################################
#Main commands
########################... |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.