sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
f0cd3e624bb878289207e2997862f5e95c095ea303209a7398cefed3aeb59528 | Shell | 3,249 | 83 | #!/bin/bash
mkdir -p collapsed_bam_H1_20230719
mkdir -p H1_parse_tmp
mkdir dedupped_bam_H1_20230721
mkdir -p AEI_H1_v2
mkdir -p AEI_H1_v2/tmp_20230126
mkdir -p AEI_H1_v2/log_20230126
mkdir -p AEI_H1_v2/index_20230126
mkdir -p AEI_H1_v2/mpileup_20230126
for FILE in cb_listsH1/v5/*
do
ter_id="$(echo $FILE | cut -d'_... |
766097a17a5428e3c6671478fa8da2b4b662959551c4392893c6cdb207033fd3 | Shell | 3,256 | 50 | #!/usr/bin/env bash
# Regenerate Phase-2 (v1.x --drach/--m6A) byte-identity goldens from the repo's
# Perl coverage2cytosine (v0.25.1, self-contained). Run from this directory
# (tests/data/phase2_drach). Creates the tiny fixtures AND the per-mode Perl
# golden output dirs under ./gold/ — full provenance.
#
# ⚠️ SLOW: ... |
eee387e8c9ebab560ee033f24a6b1d661d8ecd69e9b498047dff1c022eab2198 | Shell | 3,256 | 102 | #!/usr/bin/env bash
# Written by Wu Jianxiao and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
#This function script projects a single volume to fsaverage space using Affine approach. It is required to finish running the recon-all results before running this function.
BIN_DIR=$(di... |
eded57e1994426b236d0987bd41ea0e62982249db98462bae8717a56294d1ea1 | Shell | 3,270 | 110 | #!/bin/bash
#SBATCH -t 01:00:00
#SBATCH --job-name=Sup
#SBATCH -c 4
#SBATCH --mem=30g
#SBATCH --output=sup.out
# Load necessary modules
# module purge
# module load gcc/8.2.0
# module load python/anaconda3.10-2022.10
# source activate deeptools
module purge
# load conda
# shellcheck disable=SC1091
source /ihome/ial... |
42d191df9d9256f3eb9a3ec6a7482c5b5870cb60a0d6ac1eb32e410cbe2e69a2 | Shell | 3,276 | 88 | #!/bin/sh
# This function replicates the variance component model results in the GSP dataset shown in Li et al., 2019
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
########################
# setup for CIRC cluster
########################
curr_dir=$(p... |
3b88692f27aa309f1e66a3fb470ef3b35b944f2ef7544acd5c5851062d324d21 | Shell | 3,280 | 134 | #!/bin/bash
set -ex
install_ubuntu() {
# NVIDIA dockers for RC releases use tag names like `11.0-cudnn8-devel-ubuntu18.04-rc`,
# for this case we will set UBUNTU_VERSION to `18.04-rc` so that the Dockerfile could
# find the correct image. As a result, here we have to check for
# "$UBUNTU_VERSION" == "18.04"... |
b0dd99b01fe51daff85a6838f0f555fbd87062259da401ce7ad720ac5ee7a793 | Shell | 3,300 | 57 | #!/bin/sh
# MAKE SURE FUSION.compute_weights.R IS IN YOUR PATH
# FILL IN THESE PATHS
if [ $# -gt 5 ]; then
echo "ERROR: YOU MUST INPUTE 5 PARAMETER like: bash permute.bash sample_size index PEER_factor FDR output_dir"
else
../permutation/index.R $1 $2
mkdir $5
cat qqnorm_all | awk 'NR==FNR&&NR>=1{a[$1]=0}N... |
d45cccd58f50f46f2d7e8c6f9f7caa5bebf1d7507411a56953d48561117d86d2 | Shell | 3,319 | 87 | #!/usr/bin/env bash
# Written by Wu Jianxiao and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# This warpper script runs CBIG_projectVol2fsaverage.sh for an example input
if [ "$(uname)" == "Linux" ]; then
SCRIPT_DIR=$(dirname "$(readlink -f "$0")")
elif [ "$(uname)" == "Darwin... |
9ccc7a7c225aa2818cfbcf51f8fc214488138f01efe1dab3a176a35772878cf7 | Shell | 3,327 | 87 | #!/usr/bin/env bash
# Written by Wu Jianxiao and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# This warpper script runs CBIG_projectVol2fsaverage.sh for an example input
if [ "$(uname)" == "Linux" ]; then
SCRIPT_DIR=$(dirname "$(readlink -f "$0")")
elif [ "$(uname)" == "Darwin... |
fd630ba1445dfe5f9fda1e4d29eb257d69576b01c4e4ed8e1eccca8c275afe1d | Shell | 3,338 | 119 | #!/bin/bash
path2scripts=/hpc/hub_oudenaarden/aalemany/bin/map/starmap
path2bcfile=/hpc/hub_oudenaarden/aalemany/bin/mapandgo
path2trimgalore=/hpc/hub_oudenaarden/aalemany/bin/TrimGalore-0.4.3
path2cutadapt=/hpc/hub_oudenaarden/aalemany/bin/
path2star=/hpc/hub_oudenaarden/avo/nascent/STAR-2.5.3a/bin/Linux_x86_64
if [... |
a2a33ab73a5e3799c6414abcd24a7dbd3d3482c09a908f9aadc3f345e35ec619 | Shell | 3,348 | 107 | #!/bin/bash
# Written by Nanbo Sun and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
###########################################
# Usage and Reading in Parameters
###########################################
# Usage
usage() { echo "
Usage: $0 -i <inDir> -d <idList> -r <reorientMa... |
0859cbce42e20ef781ac7c6a3a1fe66bb08cefa9e81fd656b60b8b191c9fca8e | Shell | 3,370 | 91 | #!/bin/bash
set -ex
## This file is only used for testing in OceanCode
# Setting system global variables
ls /deps/*
ls -lrt ./
export PATH=/deps/disperse/bin:$PATH
export PYTHONPATH=/code/python:$PYTHONPATH
# Directories for output data
mkdir -p tests/results
# mkdir -p /data/synthetic_test/out
mkdir -p /data/tutori... |
2eeeeabccd6f30e0cc0d32d826376a3fb48a60de7f95bfd89079da178e531aa9 | Shell | 3,372 | 121 | #!/bin/bash
set -e
set -u
function showHelp() {
#
# Display commandline help on STDOUT.
#
cat <<EOH
===============================================================================================================
Usage:
$(basename $0) OPTIONS
Options:
-h Show this help.
Required:
-i inputfile (final report ... |
ffdc89843a57498882e3cd2503054d5e9cc9e3e70af86bc05f2b394e756ddab9 | Shell | 3,396 | 105 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
892804c2328951b6717dc0c704f1129767e98aebc24546778a5625367949c3df | Shell | 3,404 | 116 | #!/bin/bash
## 1. receive arguments from 08annotate.sub
outdir_staging=$1
conda_pack_squid=$2
genome_seq_squid=$3
genome_ann_squid=$4
genome_info=$5
ann_version=$6
job_parent=$7
job=$8
## 2. configure the conda enviroment
set -e
workdir_pac=$(basename $conda_pack_squid)
ENVNAME=$(basename $conda_pack_squid .tar.gz)
... |
d9cca67673c3efa541da4ddfe97fd5ea907e1885797730cd313ca4e0ba66fc5f | Shell | 3,443 | 95 | #! /bin/bash
# Written by Wei Hou Tan and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
echo "Executing this script will install Python packages used by CBIG."
read -p "Are you sure? (y/n) " answer
if echo "$answer" | grep -iq "^y" ; then
# store current directory
WORKDI... |
2de77fb30dcff9f0c1e703ce6cf4ef53ae5305463b1be3b75048cacdcb354e4b | Shell | 3,447 | 140 | #!/bin/bash
set -Eeuxo pipefail
mkdir -p build
cp source/browser-compatibility.js build
cp source/colormap.js build
cp source/constants.js build
cp source/deferred.css build
cp source/image.js build
cp source/index.html build
cp source/main.css build
cp source/main.js build
cp source/manifest.json build
cp source/mov... |
0faef4cd6703f9b211366489892f6d85bca136285b27d98d53b121f8a0b60571 | Shell | 3,467 | 103 | #!/usr/bin/env bash
# Written by Wu Jianxiao and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
#This function script projects a single surface in fsaverage space to a volume space using Affine approach. It is required to finish running the recon-all results before running this func... |
538e12ce5a1117df604863470ba7de605b8c013f47f149f8375cf3e4e0bfe893 | Shell | 3,471 | 98 | #!/usr/bin/env bash
# Written by Wu Jianxiao and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
#This function script projects a single surface in fsaverage space to a volume space using FS-recon approach. It is required to finish running the recon-all results before running this fu... |
0a3ed7ee9c67edabd40070ff9be79b2ca05e61f03aa2f3ce2c02a9e3df76568b | Shell | 3,484 | 113 | #MOLGENIS walltime=05:59:00 mem=10gb ppn=1
#string Project
#string pythonVersion
#string beadArrayVersion
#string intermediateDir
#string bpmFile
#string projectRawTmpDataDir
#list Sample_ID
#list SentrixBarcode_A
#list SentrixPosition_A
#string logsDir
#string diagnosticOutputFolder
#string resultDir
#string pipeline... |
30160bedbf93d67975e98f2d1a64174ad67b61816c7b2841d4d86b6cb748c2a3 | Shell | 3,494 | 75 | #!/bin/bash
# Written by Xiuming Zhang and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
###########################################
# Usage and Reading in Parameters
###########################################
# Usage
usage() { echo "
Usage: $0 -b <brainList> -n <nuisanceVars> ... |
b330c4909d016013f9cc82961c4d09b31719f6b6207a7325f264755508faff60 | Shell | 3,498 | 105 | #!/bin/bash
# Written by Nanbo Sun and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
###########################################
# Usage and Reading in Parameters
###########################################
# Usage
usage() { echo "
Usage: $0 -d <docs> -t <setting> -k <no_topics>... |
6161ee137f6774bab86b497c517dbdf5de30091dabdc1e11e7e946e663fcc068 | Shell | 3,501 | 97 | #!/bin/bash
#Purpose: Determine which subjects have which number of runs available and create lists accordingly for MSHBM Step3.
#Inputs: Generate_data_step_2.5 sess_lists output.
#Outputs: Text lists with corresponding subjects for each number of sessions.
#Written by M. Peterson, Nielsen Brain and Behavior Lab und... |
f508f6881285f401828e5383169c72c1863280519df689f41ae25cc77cb57731 | Shell | 3,534 | 118 | #!/bin/bash
# tested with dorado 0.3.4 and ONT barcoding software version 7.1.4+d7df870c0 (Mk1c distribution)
# call one fast 5, then exit. Employ user-specified settings for kit and basecalling model
# usage: thisscript SAMPLENAME BCMODEL BARCODEKIT
# e.g.
# SAMPLENAME=MinKNOW_experiment_name
# BCMODEL=dna_r9.4.1_e8... |
31bcd7e197431905d80dc89df7593324b38c2b97833a19ba6c173e1eb33211bb | Shell | 3,566 | 67 | #!/usr/bin/env bash
#
# p4_matrix.sh — Phase 4 (extractor inline epic) downstream byte-identity matrix.
#
# Drives scripts/phase_h_smoke.sh over the downstream bedGraph/coverage2cytosine
# cells for the 10M + full_size datasets on oxy, comparing the Rust extractor's
# in-process `--bedGraph`/`--cytosine_report` output ... |
e5f6540d9474eaefaaf8e50af341111424a203c73cd4ebf07e50cd218b0abd2f | Shell | 3,581 | 103 | #!/bin/bash
set -ex
# Optionally install conda
if [ -n "$ANACONDA_PYTHON_VERSION" ]; then
BASE_URL="https://repo.anaconda.com/miniconda"
MAJOR_PYTHON_VERSION=$(echo "$ANACONDA_PYTHON_VERSION" | cut -d . -f 1)
case "$MAJOR_PYTHON_VERSION" in
2)
CONDA_FILE="Miniconda2-latest-Linux-x86_64.sh"
;;
... |
9137bf76c785669e2fa22248c0ea5a30ac003db4beb0a90416989f2ec6ae871e | Shell | 3,597 | 77 | ## ------------------------------------------------------------------------------------
sigfile=/cFDR/MDD_CT_list
line_count=$(awk 'END{print NR}' "$sigfile")
for i in $(seq 1 $line_count);do
IDP=`cat $sigfile|awk 'NR=='$i' {print $1}'`
disease=`cat $sigfile|awk 'NR=='$i' {print $2}'`
name=$(echo "$disease" | awk -F'_'... |
e446ad76fcb597ae2025c1ef7c21553586b6fd4480d7d99ea7a5c44b04aba574 | Shell | 3,598 | 122 | #!/bin/bash
# tested with dorado 0.4.2
# call one fast 5, then exit. Employ user-specified settings for kit and basecalling model
# usage: thisscript SAMPLENAME BCMODEL BARCODEKIT
# e.g.
# SAMPLENAME=MinKNOW_experiment_name
# BCMODEL=dna_r9.4.1_e8_hac@v3.3 / dna_r10.4.1_e8.2_400bps_hac@v4.2.0 / dna_r10.4.1_e8.2_260bp... |
31a229b7b5cc167dfa32ef1f6a2dce6475dc4eff34364ab903387511718fa727 | Shell | 3,632 | 107 | #!/bin/bash
# created: 06-06-2018, Anna Alemany (Avo lab)
# The script first takes as input the root name of a set of fastq files (R1, R2) and, when required, merges the different lanes.
# Next, if filters out reads that do not have a proper protocol structure (specific cell-seq barcode, UMI position and length, etc).... |
cf5a5a8921fc360d0d91144a6cb089ffa9fbf656f71efa608f54e03191cc078a | Shell | 3,647 | 54 | #!/bin/sh
# MAKE SURE index.r RNA_processing.r and FDR.r ARE IN YOUR PATH
# FILL IN THESE PATHS
if [ $# -ne 6 ]; then
echo "ERROR: YOU MUST INPUTE 6 PARAMETER like: bash robust_eQTL.sh sample_size index.txt PEER_factor FDR output_dir raw_counts.txt"
else
Rscript index.r $1 $2
mkdir $5
cat $6 | awk 'NR==... |
f6518266a802cec915cd791f61b123a8c6f7038381cb541ec8c87dbf7e70eac2 | Shell | 3,665 | 43 | # precomputed h5 files for human (pM10Kb_cv) and mouse (pM10Kb_Mouse_cv) are provided only to save space
# but all can be generated as below:
python setup_training_files.py --cv Roadmap_FantomAnnotations.InputData.pM10Kb.txt.gz pM10Kb_cv
python setup_training_files.py --cv Roadmap_FantomAnnotations.InputData.pM10Kb.... |
115982afc57c32e5a1cda9d231c08ec4ac797a6c10981252548ad37c17604570 | Shell | 3,667 | 55 | #!/usr/bin/env bash
# Regenerate Phase-1 (v1.x --gc/--gc_context + --nome-seq) byte-identity goldens
# from the repo's Perl coverage2cytosine (v0.25.1, self-contained). Run from this
# directory (tests/data/phase1). Creates the tiny fixtures AND the per-mode Perl
# golden output directories under ./gold/ — full provena... |
aefe2dab258437b728a504f860dacb76eb18aa946a9b17dff7b14ae8590d5526 | Shell | 3,710 | 98 | #!/bin/bash
# Written by Xiuming Zhang and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
###########################################
# Usage and Reading in Parameters
###########################################
# Usage
usage() { echo "
Usage: $0 -b <brainList> [-t <brainList_tmp... |
99a2ec9c451b90d73ed29b6b223394342239ecdc1659415d77e2dad60c457c54 | Shell | 3,715 | 85 | #!/bin/bash
rm -r collapsed_bam_TS_20230124
mkdir collapsed_bam_TS_20230124
mkdir dedupped_bam_TS_20230125
mkdir -p AEI_TS_v4rerunverbose
mkdir -p AEI_TS_v4rerunverbose/tmp_20230623
mkdir -p AEI_TS_v4rerunverbose/log_20230623
mkdir -p AEI_TS_v4rerunverbose/output_index_20230623
mkdir -p AEI_TS_v4rerunverbose/output_m... |
7ff00888264e5ee796e81cac2f69187e61f1262228314515e6178c6cd9b87cfc | Shell | 3,718 | 109 | #!/bin/bash
# author : sjn
# date : Aug 22, 2022
# histogram of per read #m6A on read / # of A/T bases on read
# histogram of the ec field's distribution
# this depends upon rust's cargo and fibertools developed by Mitchell
# module load gcc/10.2.0
# module load cmake/3.21.1
# cargo install --git https://github... |
5400b624fc403d8b90b860c5342effc2352f492f0c9ac643bc2ff5ed4835442c | Shell | 3,736 | 90 | #!/bin/bash
input_dir=/media/NAS1/Sammi_NAS1/CellRanger_Output/cortical_organoids_cr
mkdir -p collapsed_bam_CO_20230627
mkdir -p collapsed_bam_CO_20230627/tmp
mkdir -p tagged_bam_CO_20230627
mkdir -p dedupped_bam_CO_20230627
mkdir AEI_CO_v2
mkdir AEI_CO_v2/tmp_20230627
mkdir AEI_CO_v2/log_20230627
mkdir AEI_CO_v2/ou... |
d9d63ae6fa697051eb5fe7d616a1d56bcddbfd7e7d3942efacd36e737ee78640 | Shell | 3,772 | 112 | #!/bin/sh
# This function replicate the kernel ridge regression results in the GSP dataset shown in Li et al., 2019
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
########################
# setup for CIRC cluster
########################
curr_dir=$(pwd... |
33c4d71eff44a575ac848d952aecc20717be2e1534337b480bee786a45657609 | Shell | 3,791 | 128 | #!/bin/bash
#================================
# Step 3: Remove ethnic outliers
#================================
prefix=act
#---------------------------------------
# Sync variant IDs between filesets
#---------------------------------------
# need to remove :A1:A2 from "$prefix" variant IDs
cat tmp/"$prefix"_qc1.tmp... |
beac66a6ca48833be442e763ba2541c3ff3ff72cbdd5b33eee773d0d76a4b728 | Shell | 3,808 | 68 | #!/bin/bash
# ==========================================================================
# Phase-1 spike (v1.x) — HISAT2 determinism.
#
# QUESTION: Is Perl Bismark v0.25.1 + HISAT2 2.2.2 byte-deterministic run-to-run
# on real bisulfite reads (→ a byte-identity Rust HISAT2 wrapper is reachable)?
# Capture the exact HIS... |
a854170b6218ef86dd36bdfe61841663167c084a67a97b2fc524a0e88c553a1c | Shell | 3,830 | 119 | #!/usr/bin/env bash
# Written by Wu Jianxiao and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
#This script projects MNI152 volume to fsaverage surface space using Freesurfer baseline approaches
###########################################
#Define paths
############################... |
84cbf0426668a7ae580bb4338719d1e6d9c27691b81448a71319add87407c35c | Shell | 3,832 | 123 | #!/bin/bash
# for dorado 0.5.0
# call one fast 5, then exit. Employ user-specified settings for kit and basecalling model
# usage: thisscript SAMPLENAME BCMODEL BARCODEKIT
# e.g.
# SAMPLENAME=MinKNOW_experiment_name
# BCMODEL=dna_r9.4.1_e8_hac@v3.3 / dna_r10.4.1_e8.2_400bps_hac@v4.3.0 / dna_r10.4.1_e8.2_260bps_hac@v4... |
50add0470225bc2cb498dd29239c76e90fee539f8290943addc93de354b671c7 | Shell | 3,836 | 102 | #!/bin/bash
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to ... |
f3a3c3cb91cae72bee892dbcefc708948b0b13447b23bbde3e7ba48bfd2da4b5 | Shell | 3,841 | 149 | #!/bin/bash
### 1. set paths ###
## set parameter parsings for user-specified paths ##
usage="## Parallely extract SNPs with known predicted ancestral alleles.\n
usage: sh $0 [-h/--help] [-w/--work_directory <path>] [-a/--in_anno_seq <path>]\n
[-m/--in_map <path>] [-s/--script <path>] [-r/--in_assembly_rep <path>]\n
[... |
fdacb3bc229f38ce8d00c7bc3b779b24272639e2c8f9da446a6d4be51393c01a | Shell | 3,870 | 130 | #!/bin/bash
## 1. receive arguments from 05realign.sub
sample=$1
outdir_staging=$2
indir_staging=$3
conda_pack_squid=$4
genome_seq_squid=$5
job_parent=$6
job=$7
## 2. configure the conda enviroment
set -e
workdir_pac=$(basename $conda_pack_squid)
ENVNAME=$(basename $conda_pack_squid .tar.gz)
ENVDIR=$ENVNAME
# these... |
df7fb70ab4861c306f0ba331aaaab0749ea551f6c1bcd3829e1ce04651c871c3 | Shell | 3,880 | 35 | # # circle sims
python3 main.py --ntasks 1 --submit-tscc mechanotransduction --mesh-folder /root/scratch/meshes/circle_hEdge_0.1_full3dfalse --time-step 0.01 --e-val 0.1 --outdir /root/scratch/circle_E0.1_full3dfalse --axisymmetric
sleep 10 # sleep between calls to avoid opening the same h5 file at the same time
python... |
cc920971f4720a47a8e4dccae25511cda93b7a0f216ddddd13ae8f1ba4c9fa38 | Shell | 3,894 | 88 | #!/bin/bash
rm -r collapsed_bam_KO_20230201
mkdir collapsed_bam_KO_20230201
mkdir dedupped_bam_KO_20230203
mkdir AEI_KO_v1
mkdir AEI_KO_v1/tmp_20230203
mkdir AEI_KO_v1/log_20230203
mkdir AEI_KO_v1/output_index_20230203
mkdir AEI_KO_v1/output_mpileup_20230203
for FILE in cb_listsKO/v1/*.txt
do
ter_id="$(echo $FILE ... |
2f5be64fb5929d127d8fe71d3b25b47981b77f9bedaa33d167166674b3037944 | Shell | 3,949 | 90 | #! /bin/bash
# run freesurfer surface extraction on fetal brain atlas
# following protocols from here:
# https://prime-re.github.io/structural/surfaces_and_flatmaps_notebook/Surfaces_and_Flatmaps.html
# and here:
# https://freesurfer.net/fswiki/ExVivo
# create dummy volume first and edit voxel dimensions to 1mm isotro... |
c650832972c6986b20930591dcd80208ebab045d720f849d761837550aa621e3 | Shell | 3,951 | 121 | #!/bin/bash
# Argument parsing
if [ "$1" = "jacoco" ]
then
JACOCO_ENABLED=true
else
JACOCO_ENABLED=false
fi
# Clean out any old sandbox, make a new one
OUTDIR=sandbox/single
MKDIR=mkdir
SEP=:
case "`uname`" in
CYGWIN* )
MKDIR=mkdir.exe
SEP=";"
;;
esac
rm -fr $OUTDIR
$MKDIR -p $OUTDIR
f... |
2b65c870b6ac67e990d0bf7015e6f277fd4e4e278e44f0e4d489ccc043bac37c | Shell | 3,959 | 122 | #!/bin/bash
# Copyright 2026 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... |
3f104f6f3264a1f99e04705bd8df9de68480764d8b5e7a251ff5e4a38466bf20 | Shell | 3,968 | 127 | #!/usr/bin/env bash
# Written by Wu Jianxiao and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# This function runs the make_xyzIndex_vol function to make index volumes for both the original MNI152 template and the
# normalised version
###########################################
... |
093d11e14d73300fd0d4c1ab26654593f8e0ff915a70c66b2ae4697e8ad8f475 | Shell | 3,981 | 121 | #!/bin/bash
# Argument parsing
if [ "$1" = "jacoco" ]
then
JACOCO_ENABLED=true
else
JACOCO_ENABLED=false
fi
# Clean out any old sandbox, make a new one
OUTDIR=sandbox/single
MKDIR=mkdir
SEP=:
case "`uname`" in
CYGWIN* )
MKDIR=mkdir.exe
SEP=";"
;;
esac
rm -fr $OUTDIR
$MKDIR -p $OUTDIR
f... |
d5c7066347a2477270a7c08455aa93e13c980abe01ad56e727075549f7869e93 | Shell | 4,051 | 156 | #!/bin/bash
#mouse genome primary assembly: from https://www.gencodegenes.org/mouse/ version GRCm39 (mm39), release M29
#mouse gene annotation: from https://www.gencodegenes.org/mouse/ version GRCm39 (mm39), release M29
maindir=$1
indexdir=$2
samplefile=$3
tempoutdir=$4
indir=$maindir/raw_fastq
######### read... |
f4f0517bf0f685575a70d5e8ad7f7b0fe835d6d58ce198022f45eafa8d9e53e5 | Shell | 4,051 | 74 | #!/bin/bash
# Phase-3 spike — minimap2 determinism + both-strand selection (oxy). Throwaway.
#
# Q1 (gating): is Perl bismark --minimap2 + minimap2 2.31 byte-deterministic
# run-to-run on 10k SE reads (→ a byte-identity Rust wrapper is reachable)?
# Q2: what `aligner_options` does Bismark assemble for minimap2 (the -... |
c6ad7d85c5a4bc5027e49ee3d969f4e6cd2fb578ba70e40ba889ad9dc0a7ebc0 | Shell | 4,070 | 132 | #!/bin/bash
### m6Anet
OUT=/PATH/TO/OUTPUT/DIR
FAST5=/PATH/TO/FAST5
FASTQDIR=/PATH/TO/FASTQ
REF=/PATH/TO/REF
JOB=m6anet
# basecalling
guppy_basecaller -c rna_r9.4.1_70bps_hac.cfg -i $FAST5 -s $FASTQDIR -r --compress_fastq
cat $FASTQDIR/*.fastq.gz > $FASTQDIR/pass.fastq.gz
FASTQ=$FASTQDIR/pass.fastq.gz
FASTQSUM=$FASTQ... |
08e1695b9c268ff9264ba1a67f7422321627cd0e538a42149e859e5beff8a440 | Shell | 4,101 | 102 | #!/bin/bash
module list
host=$(hostname -s)
environmentParameters="parameters_${host}"
function showHelp() {
#
# Display commandline help on STDOUT.
#
cat <<EOH
===============================================================================================================
Script to generate a pipelin... |
53f1033f3d8c767c3d6880b9a1541fddbeab389da510a64cc776b16822f318e4 | Shell | 4,125 | 132 | #!/bin/bash
#MOLGENIS walltime=05:59:00 mem=8gb ppn=1
#string tmpName
#string Project
#string logsDir
#string intermediateDir
#string HTSlibVersion
#string bedToolsVersion
#string ngsUtilsVersion
set -e
set -u
module load "${HTSlibVersion}"
module load "${bedToolsVersion}"
module load "${ngsUtilsVersion}"
module li... |
8b5f10f49510a8010a94e2de4b820ac98280fe4094346508cc02cc105c91689e | Shell | 4,138 | 127 | #!/bin/bash
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to ... |
6d69bdee57f969ab3d83eb0746cb96ba59488ece309fff3dfac8cfe8cb4d795e | Shell | 4,187 | 69 | #!/bin/bash
#
# Gokberk Alagoz - 01.11.22
#
# This script will do the following:
# 1) Make a list of gw-sig SNPs at least in one of these summary statistics
# files: Genomic SEM CPM meta-analysis results, dyslexia, rhythm impairment.
# 2) Remove recurrent SNPs from this list.
# 3) Get Effect Sizes and SEs per SNPs, cal... |
eae8a6a38ddf023ef5fa3f913248317391cff74e01d430bdfdfcc6506bd28182 | Shell | 4,205 | 43 | # Example of training of gkmExplain Models
lsgkm-master/src/gkmtrain -T 16 FA_file/EX_Human_Fold0_Pos_Train.fa FA_file/EX_Human_Fold0_Neg_Train.fa gkmExplain_Model/EX_Human_Fold0
lsgkm-master/src/gkmtrain -T 16 FA_file/EX_Human_Fold1_Pos_Train.fa FA_file/EX_Human_Fold1_Neg_Train.fa gkmExplain_Model/EX_Human_Fold1
lsgkm... |
ac2fc0dde02b3b12753a46b4e83ab2fa99f718f18bc3b3ada257202d53411986 | Shell | 4,213 | 105 | # Aim: Run global Fst analysis to compare anadromous (below) vs. resident (above) groups.
# move to correct directory before running
######################################################
######################################################
echo "1. Create SAF files for groups"
######################################... |
0d5c9ab34d0cbcc2cc6caad93889862591f1607c2866ed53c958f3fdb7e7f9f3 | Shell | 4,234 | 70 | # Deep Explain CV computes the following methods:
# 'deeplift', 'grad*input', 'saliency', 'elrp', 'intgrad'
# 'grad*input' and 'intgrad' are presented in the paper for the reasons described
# thus only these two have stored precomputed results to save space in download
#human (using best model from 10 trials on each o... |
9f8efaa60ec20cf9ea0fbdb81cba7bb105d9547ad8d2b4174348e537b5489c0e | Shell | 4,237 | 158 | #!/bin/bash
### 1. set paths ###
## set parameter parsings for user-specified paths ##
usage="## this script calculates biallelic minor allele frequency.\n
usage: bash $0 [-h/--help] [-w/--work_directory <path>] [-s/--dir_snp <path>]\n
[-m/--dir_mpileup <path>] [-c/--chr_assignment <path>]\n
[-v/--mincov <path>] [-t/-... |
e277c872c5724aedbb632cdb9cbfd0f5baf968978ed53e31572e5b280962a75b | Shell | 4,343 | 178 | #!/bin/bash
### 1. set paths ###
## set parameter parsings for user-specified paths ##
usage="This script parallelly runs genomic reannotations.\n
usage: sh parallel_by_chr [-h/--help] [-w/--work_directory <path>] [-s/--script <path>]\n
[-b/--bedtools <path>] [-a/--input_anno <path>] [-g/--input_genome_seq <path>]\n
... |
7f88fb673679ed8c75535370290931e5b0ac3197f880ab0d469e19c78b1bb0f8 | Shell | 4,349 | 119 | #!/bin/bash
# Written by Nanbo Sun and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
###########################################
# Usage and Reading in Parameters
###########################################
# Usage
usage() { echo "
Usage: $0 -a <docs1> -b <docs2> -t <setting> -k... |
c2bc493a9cae74325c3e64984c07d4a42a56e724c4d6b2264425c7803926a443 | Shell | 4,355 | 107 | #!/usr/bin/env bash
# Create or verify the project environment, then start the Observatory.
# ./scripts/launch_observatory.sh CUDA GUI (default)
# ./scripts/launch_observatory.sh --cpu explicit CPU validation
# ./scripts/launch_observatory.sh --replay F offline replay, no model weights
# Any other... |
de8f210637f38b1fbd05fa732815be28fba6f0d385112251b0776e8d0083bc71 | Shell | 4,362 | 144 | #!/usr/bin/env bash
# Written by Wu Jianxiao and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# This function registers a moving volume to a fixed volume using ANTs
###########################################
# Main commands
###########################################
main(){
#... |
8b0a79eb19a93e32bfbd52eec1bfb9f236cbc71416179b070a37404d1d24ce1d | Shell | 4,491 | 196 | #!/bin/bash
#mouse genome primary assembly: from https://www.gencodegenes.org/mouse/ version GRCm39 (mm39), release M29
#mouse gene annotation: from https://www.gencodegenes.org/mouse/ version GRCm39 (mm39), release M29
maindir=$1
indexdir=$2
samplefile=$3
indir=$maindir/raw_fastq
######### read in sample names f... |
34bc617170c4352ed0f3230c4fe5ae7f1a54b2af97d42a9a52ebd6971c60d815 | Shell | 4,493 | 133 | #!/bin/bash
# This is Step 2.5, which will generate the profile lists for Step 3
##########################
# Specify output directory
##########################
HOME=/fslgroup/fslg_spec_networks/compute
HOME_D=/fslgroup/fslg_HBN_preproc/compute
out_dir=${HOME_D}/HCPD_analysis/parc_output_fs6_HCPD_REST
preproc_outp... |
92c7b4b50d966d4a3a6ca473cbcb8815e1a35960fe416f38e543856c3cd53882 | Shell | 4,535 | 76 | #!/usr/bin/env bash
# Regenerate Phase-B byte-identity goldens from the repo's Perl coverage2cytosine
# (v0.25.1, self-contained Perl). Run from this directory (tests/data/phase_b).
set -eo pipefail
C2C="$(cd "$(dirname "$0")/../../../../.." && pwd)/coverage2cytosine"
for mode in default cx zero thr; do
case $mode in... |
ef443fafe60d2d9d9b335b54400afc16cd18d84174d1110b0b77a433ff5b13f9 | Shell | 4,556 | 172 | #!/bin/bash
#
# Some quick shortcuts to quickly test ACME's proper functionality
#
# Copyright © 2020-2025 Ernst Strüngmann Institute (ESI) for Neuroscience
# in Cooperation with Max Planck Society
# Copyright © 2026 Ernst Strüngmann Institute (ESI) of the Max Planck Society
#
# SPDX-License-Identifier: BSD-3-Clause
#
... |
10b3c02e6ca5ed650a589feac4c3616ff7dc3a3052d436939141f58e0ea66ea2 | Shell | 4,572 | 145 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_2.sh
# Simulator : Aldec Riviera-PRO Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source fi... |
75488351b3130f28bb96c2bd0236598b53d955509299f4bd98a9d46f77ce0d6e | Shell | 4,572 | 145 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : vio_0.sh
# Simulator : Aldec Riviera-PRO Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source fi... |
a5ad44faf775d7e07c573c41a234c4b6911c20280972b87281881249015c5e84 | Shell | 4,572 | 145 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_4.sh
# Simulator : Aldec Riviera-PRO Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source fi... |
aaa51691caa8a45e6a848a964eb5d00468143d99b751d8c3ce389a38ebd90f49 | Shell | 4,572 | 145 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_3.sh
# Simulator : Aldec Riviera-PRO Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source fi... |
cd23df5799fa5a9bd0a4a7466e0ef4ed70edd5c155907b4181d44a81af90a604 | Shell | 4,572 | 145 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_1.sh
# Simulator : Aldec Riviera-PRO Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source fi... |
08240e73c7d3d6bcca9d088c8f3fdc55197c5c3b226a3f2c85932c98118d3b81 | Shell | 4,573 | 145 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_3.sh
# Simulator : Aldec Active-HDL Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source fil... |
31fe422f7dd44bf426c87126ca8c946df75b2ddc0bec9aeccad1c459551804ad | Shell | 4,573 | 145 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : vio_0.sh
# Simulator : Aldec Active-HDL Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source fil... |
40e6e66e2a3d8dd11b445abe846c3ed3e3f4dd3162b46b97eea1fb006d683947 | Shell | 4,573 | 145 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_1.sh
# Simulator : Aldec Active-HDL Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source fil... |
7254bb993234659adfd344ea362b8675f04aaad9cb9f5cef8f561167e62ddd46 | Shell | 4,573 | 145 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_2.sh
# Simulator : Aldec Active-HDL Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source fil... |
a9f9453ec0d49aee1767ad2da43a86abcadc6459213ba796892d7ef827774b2f | Shell | 4,573 | 145 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_4.sh
# Simulator : Aldec Active-HDL Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source fil... |
ee410028baa778af886360b63b2a25dfc24a7a8f7b810d1fc913828d375ca549 | Shell | 4,590 | 63 | #!/bin/bash
# DPABISurfSlurm is designed for running DPABISurf on high-performance computing (HPC)
# You should have your data (BIDS and subjects.txt) at as defined in DATADIR.
# You should have DPABISurfSlurm at as defined in DPABISurfSlurmDIR.
# You should have SetEnv.sh at as defined in SetEnvScriptDir.
# You shoul... |
d50aa33ee3fd3c1f50772cc9aaad5a30d50fba0f806ed5f1bc982aeb61f718f7 | Shell | 4,596 | 139 | #!/bin/bash
# Load necessary modules
module purge
module load gcc/8.2.0
module load python/anaconda3.10-2022.10
source activate deeptools
# Define constants
BLACKLIST="/bgfs/ialdiri/Genomes/mm10-blacklist.v2.bed.gz" # mm10 (PLUTO FILES)
CHROM_SIZE="2650000000"
WINDOW_SIZE=10
# Define paths for SOX2 CR Files
SOX2_BAM... |
8711859adf6b07195eea3b533439e9e71f2381a798f7f82c6e4b781dc89035f4 | Shell | 4,611 | 143 | #!/bin/bash -f
# Vivado (TM) v2015.4 (64-bit)
#
# Filename : clk_wiz_0.sh
# Simulator : Xilinx Vivado Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source files.
# The script will automatically create the design libraries sub-directories in the run
#... |
fabd5e91ebe5fc8f520ab0a0ba65309fe1a75f92fd097a8a070c71046e9feb0e | Shell | 4,624 | 150 | set -e
set -u
function preparePipeline(){
local _projectName="NIST_TRIO"
rm -f "${tmpfolder}/logs/${_projectName}/run01.pipeline.finished"
echo "TMPFOLDER: ${tmpfolder}"
pwd
rsync -r --verbose --recursive --links --no-perms --times --group --no-owner --devices --specials ${pipelinefolder}/test/rawdata/2036939900... |
7179f8c910266eaa71416b302e20b45a3715089d54742bb965df9d5fd674e293 | Shell | 4,654 | 79 | #! /bin/bash
# using manually-defined ROI, align ubrain cortical surface to dHCP fetal template
#1. ensure A1 cortex is not labeled in superiortemporal label
wb_command -metric-math '(y - x) > 0' cortical_roi/ubrain.superiortemporal.func.gii -var y cortical_roi/ubrain.superiortemporal.func.gii -var x cortical_roi/ubr... |
b9dd154cdac0ac8fec077c8c0f2499894a9e2e28e1d778a02ca9e28507ed8d9d | Shell | 4,674 | 133 | #!/bin/bash
source ../multiNodeUtils.sh
# Argument parsing
if [ "$1" = "jacoco" ]
then
JACOCO_ENABLED=true
else
JACOCO_ENABLED=false
fi
# Clean out any old sandbox, make a new one
OUTDIR=sandbox/multi
MKDIR=mkdir
SEP=:
case "`uname`" in
CYGWIN* )
MKDIR=mkdir.exe
SEP=";"
;;
esac
rm -fr $... |
748682d3fc92148d5cb5a0232e7f92d4eb73d05bd719a29322077d8cfb13374b | Shell | 4,704 | 133 | #!/bin/bash
source ../multiNodeUtils.sh
# Argument parsing
if [ "$1" = "jacoco" ]
then
JACOCO_ENABLED=true
else
JACOCO_ENABLED=false
fi
# Clean out any old sandbox, make a new one
OUTDIR=sandbox/multi
MKDIR=mkdir
SEP=:
case "`uname`" in
CYGWIN* )
MKDIR=mkdir.exe
SEP=";"
;;
esac
rm -fr $... |
5467dd16c82e331fec916215693791e030d8307e75bf50b0061cdffc480e287d | Shell | 4,713 | 153 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_0.sh
# Simulator : Aldec Riviera-PRO Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source fi... |
0bfec20f6bbc7c5b4df7a6ba6d0ba934dccb436de1d6fb09dcb3389279feaf2d | Shell | 4,715 | 145 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : fifo_generator_0.sh
# Simulator : Aldec Riviera-PRO Simulator
# Description : Simulation script for compiling, elaborating and verifying the projec... |
3aaa0638ebf467f68c04b999e378d7bd38d21a3968611c177c773078315cbc8c | Shell | 4,716 | 145 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : fifo_generator_0.sh
# Simulator : Aldec Active-HDL Simulator
# Description : Simulation script for compiling, elaborating and verifying the project... |
96038fde158f5ea5d12de7ba69c15b0a388e6dc51c90c9ce61dc172c46fe10b4 | Shell | 4,716 | 153 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_0.sh
# Simulator : Aldec Active-HDL Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source fil... |
7ef0b63cc4b1288fd19a467987faa8f798405111c07b7eca040c4037a3e843ad | Shell | 4,725 | 142 | #!/usr/bin/env bash
# Written by Wu Jianxiao and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# This function runs the CBIG_make_xyzIndex_surf function to make index volumes for each GSP subject (x/y/z coordinates
# of vertex in fsaverage registered to subject's surface space)
#... |
b9b22da8ad0f4044a1bb248d05cbe627213d98a004fe3bd8f11e6a0d77a2a9cf | Shell | 4,731 | 79 |
VGGMODEL10="vgg19/18112020/10push0.9506.pth/"
VGGMODEL20="vgg19/18112020/20push0.9489.pth/"
VGGMODEL30="vgg19/18112020/30push0.9483.pth/"
RESMODEL10="resnet152/19112020/10push0.8167.pth/"
RESMODEL20="resnet152/19112020/20push0.9678.pth/"
DENSMODEL10="densenet161/25012021/10push0.9800.pth/"
DENSMODEL20="densenet161/250... |
83fdbf00eeb95e2092ed283bab3360d74bfc6d23d7edfcd198bf4239bc2b3f5d | Shell | 4,733 | 160 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_2.sh
# Simulator : Mentor Graphics Questa Advanced Simulator
# Description : Simulation script for compiling, elaborating and verifying the pro... |
b35388b81e6f47fc2d24495135b3aac383d1014c4494c5379fe7698b68801573 | Shell | 4,733 | 160 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_3.sh
# Simulator : Mentor Graphics Questa Advanced Simulator
# Description : Simulation script for compiling, elaborating and verifying the pro... |
cc2288f30813744ae2c64cdbbfd0ef191277151f12121bd41069bf7ccc5c5ec7 | Shell | 4,733 | 160 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_1.sh
# Simulator : Mentor Graphics Questa Advanced Simulator
# Description : Simulation script for compiling, elaborating and verifying the pro... |
e0ba971744b68426f947128c5c6a53466292d3f6530c44372eeb3c18eee22257 | Shell | 4,733 | 160 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : vio_0.sh
# Simulator : Mentor Graphics Questa Advanced Simulator
# Description : Simulation script for compiling, elaborating and verifying the pro... |
e40094559fc1a51769803a0b86961a961c354a3c88281a8c88e0a0d887c7577d | Shell | 4,733 | 160 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : ila_4.sh
# Simulator : Mentor Graphics Questa Advanced Simulator
# Description : Simulation script for compiling, elaborating and verifying the pro... |
8905ffa25d3c5eef84b3b82bad44acb632bad78ddd2caf6a580686ce8c0e7b02 | Shell | 4,753 | 119 | #!/bin/bash
# Written by Nanbo Sun and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
###########################################
# Usage and Reading in Parameters
###########################################
# Usage
usage() { echo "
Usage: $0 -a <docs1> -b <docs2> -t <setting> -k... |
523f1a92ae5434718056f485fffad2b68d61c29aa8399cefb06a79e90816d6e4 | Shell | 4,755 | 153 | #!/bin/bash -f
#*********************************************************************************************************
# Vivado (TM) v2018.2 (64-bit)
#
# Filename : system.sh
# Simulator : Aldec Riviera-PRO Simulator
# Description : Simulation script for compiling, elaborating and verifying the project source f... |
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