sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
0fc38edcc6bbd11ce3ff7009c07bae73847e7764878b086296944f11c54b2762 | MATLAB | 422 | 22 | function [status, start_time] = newStartScan()
% This code will trigger the 3T GE scanner at CNI using the E-prime trigger
% cable. --Michael 09/30/2013
try
s = serial('/dev/tty.usbmodem123451', 'BaudRate', 57600);
fopen(s);
fprintf(s, '[t]');
fclose(s);
catch
err = 1;
end
if exist('err','var') ==... |
f8de2c1cf543a60b66d56e9433173699958bff4989cff27a4fd930973a77b86d | MATLAB | 422 | 13 | function SONSetChanComment(fh, chan, str)
% SONSETCHANCOMMENT sets the channel comment
% FH = SON file handle
% CHAN = channel number (0 to Max-1)
% str = string with new comment
%
% Author:Malcolm Lidierth
% Matlab SON library:
% Copyright © The Author & King's College London 2005-2006
global SON_CHANCOMSZ... |
1c2b9bd01d8cfd5fbb0e45b962c18a34a400587eecf996d8dcb46740486009d1 | MATLAB | 423 | 27 | function stim = deltaStimExtend(bt, nT, v)
% Returns a sparse vector with events at binned timings
if bt<0
bt=-bt;
invert=1;
else
invert=0;
end
bidx = bt <= nT;
bt = bt(bidx); % ignore the events after nT bins
o = ones(numel(bt), 1);
if nargin < 3
v = o;
else
v = v(bidx);
end
assert(numel(o) ==... |
b376d687742d07192eb7bddd7b9376b984418cb85759a0c643fd04312b031b30 | MATLAB | 423 | 18 | % mglText.m
%
% $Id$
% usage: mglText('string')
% by: justin gardner
% date: 05/10/06
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Returns image of string.
%
% e.g.:
%
%mglOpen
%mglVisualAngleCoordinates(57,[16 12]);
%mglTextSet('Helvetica',32... |
07f9da15203c9e1e49dd0f8162e1a1b5b5af13e7770f67d0f6e4a20b5821cc73 | MATLAB | 424 | 9 | function [notched] = ml_util_filter_powerline_noise(eeg, fs)
%fs = 400; % Sampling frequency of the EEG
% Notch filter for the 60 Hz line frequency
d = designfilt('bandstopiir','FilterOrder',4, ...
'HalfPowerFrequency1',59,'HalfPowerFrequency2',61, ...
'DesignMethod','b... |
a103f511b25e7ae693dffd7ed4dfa7954f75f1151d875769786fb86a605784a9 | MATLAB | 424 | 17 | function [rotatedxys] = rotateCoordinates(xys, rotate_amount)
%ROTATECOORDINATES Summary of this function goes here
% Rotates a set of xy coordinates by an angle rotate_amount.
% Rotate_amount is in degrees.
theta = rotate_amount; % degrees
% Create rotation matrix
R = [cosd(theta) -sind(theta); sind(theta) cosd... |
cf262e5a9c377f9fa7d58a63f20085469fc2c1afadd6c2b78acfb25a5ddabb03 | MATLAB | 424 | 8 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
function [sessions] = get_sessions_from_table(T)
% Returns a unique table of animal name / session name pairs
animalIndex = find(ismember(T.Properties.VariableNames, 'animalName'));
sessionIndex = find(ismember(T.Properti... |
168f0125fbe0d3b8b1c540f59084fd07cd83221636abea5ae6c9e30b6865f28d | MATLAB | 425 | 16 | function PlotERP(data,label,lower,higher,sampleRate,butterOrder,smoothPara)
channel = [1:17, 19:30];
MIEEGData = data;
trigger = find(MIEEGData(:,33)==2);
EEG = zeros(2500,29,40);
for i = 1:length(trigger)
EEG(:,:,i) = MIEEGData(trigger(i)-500:trigger(i)-500+2499,channel);
end
h = figure;
set(h,'posi... |
61b3aa409c66a95d3759917e4dc619e6eb69b944a3471d78680d003b66f97fc5 | MATLAB | 425 | 18 | function spikeTimes = ml_nlx_mclust_load_spikes_32bit(filename)
% Load t-files as 32 bits
% returns spike times in seconds
fid = fopen(filename, 'rb','b');
if (fid == -1)
error('Could not open t-file %s.', filename);
end
ml_mclust_readheader(fid);
spikeTimes = fread(fid,inf,'u... |
26aeb5384b94a66c5b2e9c77d4b2446d94c6d9af166abed37b8cdb0b7ad9d90f | MATLAB | 426 | 12 | function ml_egomaps_draw_arena(ARENA_WIDTH_CM, ARENA_HEIGHT_CM)
a = [0, ARENA_HEIGHT_CM];
b = [0, 0];
c = [ARENA_WIDTH_CM, 0];
d = [ARENA_WIDTH_CM, ARENA_HEIGHT_CM];
refCanPts = [a(1), b(1), c(1), d(1); a(2), b(2), c(2), d(2)];
poly = refCanPts';
plot(poly(:,1), poly(:,2), 'b-o', 'linewidth... |
26b73046a862d417f41db338e4e4f9d7ba701baa54b5c5e3537957f1df46559a | MATLAB | 426 | 25 | function [FD, cat_FD, FD_TR, frame_removal]=read_motion_data(filename,ticks);
if nargin<2
ticks=51;
end
load(filename);
try
mot=FD_data;
end
try
mot=motion_data;
end
cat_FD=mot;
FD_TR=mot{1}.epi_TR;
[r c v]=size(mot);
if v==1
FD=zeros(1,ticks);
frame_removal=zeros(c,length(mot{1}.frame_removal));
en... |
91feb512f1b40d0739cf8c5b2d1fb7ed064938fba439c60b2a23adfe577f3285 | MATLAB | 426 | 9 | function mltp_plot_bfo_90_placey_sessions(obj)
mltp_plot_bfo_general_placey_sessions(obj, 90, 'same');
mltp_plot_bfo_general_placey_sessions(obj, 90, 'different');
mltp_plot_bfo_general_placey_sessions(obj, 90, 'all');
numContexts = obj.Experiment.getNumContexts();
for iContext = 1:numContexts
... |
a6d7aaaa3a79896f86b2216da5c4f43ade32397096765bd594a97e0b5ccaf2d6 | MATLAB | 426 | 19 | % mglGetSecs: Get current or elapsed time
%
% $Id$
% Syntax: mglGetSecs([t])
% By: Jonas Larsson
% Date: 04/10/06
% Purpose: Timing events
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% Usage: Get current time in s
% t=mglGetSecs
%
% ... |
efcc49dd7193fdc4420ef0c2bf4b76823ad66a3ff7a34fec2ee1a6924afc5564 | MATLAB | 426 | 14 | function phaseL=create_rand_phases(SC,num_masks,windw_pix)
N=SC.N;
n=SC.n;
hn = n+1;
phaseL=zeros(N,N,num_masks);
windw_pix_n = (floor(windw_pix/2)*2+1)/2-0.5;
wind_small = zeros(N,N);
wind_small(hn-windw_pix_n:hn+windw_pix_n,hn-windw_pix_n:hn+windw_pix_n)=1;
for i_phase=1:num_masks
I=rand(N).*exp(1i*2*pi*rand(N))... |
4bbc10baafd59c8cf5aef4114bba142689142e3702735c5ff1be354b2da4d71d | MATLAB | 428 | 7 | function [numTrials] = ml_nlx_nvt_get_num_trials(nvtFullFilename, CONFIG_NVT_FILE_TRIAL_SEPARATION_THRESHOLD_S)
% Load the nvt file and split it into trials
%nvtFullFilename = fullfile(pwd, 'VT1.nvt');
%CONFIG_NVT_FILE_TRIAL_SEPARATION_THRESHOLD_S = 100;
nvtTrials = ml_nlx_nvt_split_into_slices( nvtFull... |
18a3f30394745eead862a4ad893c9368d1817b5afdec374475e81e66bea20af5 | MATLAB | 430 | 18 | %
% Harmonic Gaussian Field (HGF) model for label propagation
%
% INPUT
% L: (combinatorial) graph Laplacian (n times n)
% Y: Label indicator matrix (n times num. of classes)
% OUTPUT
% F: Estimator matrix for Y
%
function F = HGF(L, Y)
n = size(Y,1);
lb_idx = find(sum(Y,2));
ul_idx = setdiff(1:n,lb_idx);
... |
36b327677eb9e14d97cc95fdc53658e08e281d5b332af0fc1edd742dcf6a5856 | MATLAB | 431 | 15 |
function do_bp_current_net=check_do_bp_current_net(work_info_batch, net_run_config, net_info)
% check whether need to do bp:
do_bp_current_net=net_run_config.do_bp;
if ~isempty(net_info)
do_bp_current_net=do_bp_current_net && net_info.ref.do_bp;
if do_bp_current_net && net_info.r... |
381d12ae5ace1742306f8c8c005e0451130e82a06a7b3f857a145543e877f6db | MATLAB | 431 | 17 | function [keycode,keyname]=mglShowKey;
% [keycode,keyname]=mglShowKey;
%
% Displays the keycode of a single pressed key. Useful for returning the keycodes of
% special keys, e.g. ESC, CTRL, function keys etc.
pause(0.5)
keycode=[];
while(1 & isempty(keycode))
a=mglGetKeys;
if (~isempty(a))
keycode=find... |
7f19c8ea653070286162bec61771561b7a93bcc08e5b9b4e414549814a0f5929 | MATLAB | 431 | 16 | function y = vec(x)
% y = vec(x)
%
% This function just returnes the vectorized version of the input x into
% the vector y. If x is a order-N tensor with M_j elements in the j^th
% dimension, then y is of size [ \prod_{j=1}^N M_j ]x 1.
%
% 2017 - Adam Charles
y = x(:);
end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%... |
e5eb8059c3c873bb2641d2517e1e720fecd5af038fb96480d08eca27e1bdc2c1 | MATLAB | 431 | 27 | %
% Extract the tags from the metadata of a network.
%
% RETURN VALUE
% ret A struct contain a field for every tag
%
% ARGUMENTS
% meta The metadata, as returned by read_meta()
%
function ret = get_tags(meta)
ret = struct();
if ~ isfield(meta, 'tags')
return;
end
tags = meta.tags;
match = regexp(tags, '... |
d1a4a207b8394ddf99a955b484e42f42bbefe6ab786aeec4df131aad7caf0d25 | MATLAB | 434 | 15 | function flag=SONLatestTime(fh, chan, sTime)
% SONLATESTTIME is used to flush data to disk
%
% FLAG=SONLATESTTIME(FH, CHAN, STIME)
% where FH is the SON file handle, Chan is the channel, and STIME is the
% latest valid time in clock ticks
%
% See CED documentaion
%
% Author:Malcolm Lidierth
% Matlab SON library:
% Co... |
fb7199208c25fe01cbc06a99e47065c167dcf386ae6132a4ccea461275cdba48 | MATLAB | 434 | 19 | function results = vl_test_grad(varargin)
% VL_TEST_GRAD
vl_test_init ;
function s = setup()
s.I = rand(150,253) ;
s.I_small = rand(2,2) ;
function test_equiv(s)
vl_assert_equal(gradient(s.I), vl_grad(s.I)) ;
function test_equiv_small(s)
vl_assert_equal(gradient(s.I_small), vl_grad(s.I_small)) ;
function test_equiv... |
492017100e1c4c122c00dd42e10d58c8ed480ebf66a34aa79ec97466a412139b | MATLAB | 435 | 26 | function [] = fsfigure(indf,fullscreenoption)
%default: 50 70 100 170
bordo1 = 50;
bordo2 = 70;
bordo3 = 100;
bordo4 = 170;
if (nargin == 2),
if (strcmp(fullscreenoption,'fullscreen') == 1),
bordo1 = 0;
bordo2 = 0;
bordo3 = 0;
bordo4 = 0;
end,
end,
screen_size = get(0, 'ScreenSize');
if (nargin == 0),
f1 = figure(... |
5f7b360ac90e551b0fd35440ee1567c40accea24233ed23c4b0937dc0a35ad35 | MATLAB | 435 | 18 | function TR=IcosahedronMesh
% Generate a triangular surface mesh of an icosahedron.
%
% AUTHOR: Anton Semechko (a.semechko@gmail.com)
%
% Get the vertex coordinates
t=(1+sqrt(5))/2; % golden ratio
x=[0 1 t];
s=[1 1 1; 1 1 -1; 1 -1 -1; 1 -1 1];
x=repmat(x,[4 1]).*s;
x=[x;circshift(x,[0 -1]);circshift(x,[0 -2])];
x_L2=... |
8dd918b9c2290228807b69c3cc1a6cf5670df7283123e566df3aaf9399ec70cc | MATLAB | 435 | 11 | function dspec = initDesignSpec(expt)
% Initialize the designSpec structure
%
% DesignSpec tells us how to compile the experiment data into a
% specfic design matrix. Each analysis you do could have different
% design -- different covariates to include, different parameterization,
% or some nonlinear transformation/fea... |
db372c2b22c6aa10cdc605c29b5d3d6801fd6c4e908def98f16952b1cedaae17 | MATLAB | 435 | 12 | function mltp_compute_bfo_90_placey_average(obj)
mltp_compute_bfo_general_placey_average(obj, 90, 'same');
mltp_compute_bfo_general_placey_average(obj, 90, 'different');
mltp_compute_bfo_general_placey_average(obj, 90, 'all');
numContexts = obj.Experiment.getNumContexts();
for iContext = 1:numContex... |
e5103f2173f58c4d1fac45b1d14ab63f72da5b3f1747b920f0425fbdcf409db5 | MATLAB | 435 | 16 | function width = widthestimate3D(matrix,fraction)
%calculates fwhm if fraction is 0.5, fw 1/e for 1/e, etc., uses linear
%interpolation
if nargin<2
fraction = 0.5;
end
vec1 = squeeze(sum(sum(matrix,3),2));
vec2 = squeeze(sum(sum(matrix,3),1));
vec3 = squeeze(sum(sum(matrix,2),1));
width1 = widthestimate(vec1,fract... |
5e797196aec378f93c94d26e441f78df56b039c7bc8302b3973c896bec02442e | MATLAB | 436 | 13 | function tf = isfield(this,field)
% Isfield method for GIfTI objects
% FORMAT tf = isfield(this,field)
% this - GIfTI object
% field - string of cell array
% tf - logical array
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimagi... |
87dc89fcc96c96ef99b24c06613f890c17482d2ee7bb9eccc3692873d74c8a0a | MATLAB | 436 | 14 | function [json] = ml_util_json_read(filename)
% Make sure that the file exists
if ~isfile( filename )
error('The json file (%s) does not exist.', filename);
end
% Try to read the file to get its information
try
json = jsondecode( fileread(filename) );
catch ME
error... |
dfb345a6471e13fa99a8b15104b44e2a043132f8f0d6eb66699bf829d0830217 | MATLAB | 436 | 14 | function [r,c,max_val] = max_rc(I,pix_smooth)
%returns location r and c of maximum in image,
% max_val returns mean of small area around r c determined by pix_smooth
if(~exist('pix_smooth','var'))
pix_smooth = 0;
end
[~,maxind] = max(I(:));
[r,c,~] = ind2sub(size(I),maxind);
try
max_val = mean(I(r-pix_smooth:r... |
d3ed7fee464eaff1038d9780353cecf7474a7e9f8dc3b8f782942405bc771e52 | MATLAB | 437 | 11 | function [cum_distances] = find_cumulative_distance(points)
% given a set of points in order, return the cumlative distance from the
% first point until all subsequent points
if size(points,1) <= 1
cum_distances = 0;
else
distances = sum(abs(diff(points)),2); %get the manhattan distance
... |
d7e8d697edf4514868c0adc1b09506a0ee4e2a85d3134a025475048639e5d263 | MATLAB | 437 | 13 | function pchan=SONPhyChan(fh, chan)
% SONPHYCHAN returns the physical channel (hardware port) for a channel
% in a file
%
% PCHAN=SONPHYCHAN(FH, CHAN)
% where FH is the SON file handle and CHAN is the file channel number.
% PCHAN is negative for channels with no hardware port
%
% Author:Malcolm Lidierth
% Matlab SON... |
ec4b552c3fa0b60e9290cc898a65adc7cd47de0c2ec148a40b69f21076267749 | MATLAB | 437 | 19 | function roig = roi_gauss(roi)
% gauss filt for the post process
% Jinghao Lu 05/20/2017
[d1, d2, d3] = size(roi);
d = d1 * d2;
roig = zeros(d, d3);
swin = 1;
cthres = 0.2;
% if ndims(roi) ~= 3
% d3 = size(roi, ndims(roi));
% roi = reshape(roi, d1, d2, d3);
% end
for i ... |
3550f91157074b9aa13a5412d59597f46dda5d0fdec3d2852da1778c1b377367 | MATLAB | 438 | 9 | function eventFT = table2FT(eventT, fsample)
% converts event in table format with timestamps to events in Fieldtrip
% format (structure format) with samples based on the given sample
% frequency
eventT.Properties.VariableNames={'timestamp', 'duration', 'type', 'value'};
eventT.duration=round(eventT.duratio... |
5babc7678332110a42c5d304812842294ca5f396502ee6353143107e056adfd9 | MATLAB | 438 | 12 | function handle=SONOpenNewFile(str, extrabytes)
% SONOPENNEWFILE (obsolete) creates a new SON file and returns the handle
%
% HANDLE=SONOPENNEWFILE(STR, EXTRABYTES)
% where STR is the file name (with path). EXTRABYTES sets the size of the
% optional user data area
%
% Author:Malcolm Lidierth
% Matlab SON library:
% Co... |
71779413739d71099918889e7a57ad786ab582397ba14daf589f88cf937ff101 | MATLAB | 438 | 22 | function cm_data=My_hsv(m)
cm=[213 62 50;
252 141 89;
254 224 139;
203 225 145;
153 213 180;
50 136 189;
94 79 162;
158 1 66]./255;
if nargin < 1
cm_data = cm;
else
hsv1=rgb2hsv(cm);
%hsv(153:end,1)=hsv(153:end,1)+1; % hardcoded
cm_data=interp1(linspace(0,1,size(cm,1)),hsv1,... |
a28e463ac834efd493705d904abfc4bd16072df4af122eba3de1df597f36354f | MATLAB | 439 | 24 | function start_pool(poolsize_set)
% poolsize_set = 2;
%If no pool, do not create new one
poolobj = gcp('nocreate');
if isempty(poolobj)
parpool(poolsize_set);
else %if isempty(poolobj)
%current poolsize
poolsize = poolobj.NumWorkers;
if poolsize ~= poolsize_set
d... |
4f2c8b5532debf5f70c7048c6c7c0592d73a6d91672cfeb977d881801ac09d50 | MATLAB | 440 | 10 | % mglUnbindFrameBufferObject.m
%
% $Id: mglUnbindFrameBufferObject.m cgb $
% usage: mglUnbindFrameBufferObject
% by: Christopher Broussard
% date: 09/07/10
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Unbinds a frame buffer object from the current Op... |
9eb5b9e4f092e291bc5cfa627952fe061b4d6f840cc9dafe73719bf77cec8d49 | MATLAB | 442 | 15 | % computeVelocity.m
%
% Simple function to lowpass filter position and compute velocity
function vel = computeVelocity(pos, sampleRate)
[b,a] = butter(2 , 0.5, 'low');
% filter data using butterworth function
filtPos = filtfilt(b, a, pos);
filtPos = filtfilt(b, a, filtPos);
% transform from radian... |
1beb23d29c6072e7e0e8138f07e0a692ac8596e8910dd9ee8721faa86ce319cf | MATLAB | 443 | 11 | % VL_IKMEANSPUSH Project data on integer K-means paritions
% I = VL_IKMEANSPUSH(X,C) projects the data X to the integer K-meanns
% clusters of centers C returning the cluster indeces I.
%
% See also: VL_IKMEANS(), VL_HELP().
% Copyright (C) 2007-12 Andrea Vedaldi and Brian Fulkerson.
% All rights reserved.
%
% ... |
286a5e1d17c0162a42049c763bfa77cf077aeb2ab19cbdffce2248e2e4230882 | MATLAB | 443 | 16 | function [position, lookDirectionDeg] = ml_core_behavtrackvid_h5_read( filename )
if ~isfile(filename)
error("Cannot read from (%s) as it does not exist.", filename);
end
pi = h5read( filename, '/pos_vid_pixel_i');
pj = h5read( filename, '/pos_vid_pixel_j');
lookDirectionDeg = h5read( filename, '/look_vid_deg' )... |
3455f12fbb0028d86d96691695ddc7b00e34f6277b58d8e7157a01107629ca76 | MATLAB | 443 | 14 | function Fline = external_energy(I, sigma)
%Make derivative kernels
[x,y]=ndgrid(floor(-3*sigma):ceil(3*sigma),floor(-3*sigma):ceil(3*sigma));
DGausx =-(x./(2*pi*sigma^4)).*exp(-(x.^2+y.^2)/(2*sigma^2));
DGausy = -(y./(2*pi*sigma^4)).*exp(-(x.^2+y.^2)/(2*sigma^2));
% Calculate the forces from the image
Fline(:,:,1... |
49b8feba207cc0df20b948094c963111fe0dd6cf5b53d4e42e156a6af314b3e4 | MATLAB | 443 | 14 | function om = vl_ihat( H )
% VL_IHAT Inverse vl_hat operator
% OM = VL_IHAT(H) returns a vector OM such that VL_HAT(OM) = H.
% H hast to be 3x3 skew-symmetric.
%
% See also: VL_HAT(), VL_HELP().
% Copyright (C) 2007-12 Andrea Vedaldi and Brian Fulkerson.
% All rights reserved.
%
% This file is part of the VLFeat... |
77f8fa059ed26459b703592b456f24b4db552eb04e9b12a1cb0f198c8525561a | MATLAB | 443 | 13 | function state=SONIsSaving(fh, chan)
% SONISSAVING returns the save state for a specified channel
%
% STATE=SONISSAVING(FH, CHAN)
% where FH is the SON file handle and CHAN is the channel number
% (0 - SONMaxChan()-1)
% Returns 0 if not saving, 1 if saving or a negative error code
%
% Author:Malcolm Lidierth
% Matlab... |
b109808af52d2e2b4f29cf32ad9b8f6bb13f7840601917173fd13cf424f9d339 | MATLAB | 443 | 9 | function [angleMap] = ml_egomaps_binsystem_anglemap(binSystem)
% Make a map of angles. We need to rotate it for our coordinate system to
% be consistent.
angleMap = atan2(binSystem.YY, binSystem.XX);
angleMap = rot90(angleMap,1);
angleMap(angleMap < 0) = angleMap(angleMap < 0) + 2*pi; % Change angle... |
45069932d67a2ee594999de01b6aaca00e79ea5702bdd877adad9e9bd8c7976d | MATLAB | 444 | 13 | function numSamplePerInd = getNumSamplePerInd(filesProc)
%loop on files to compute num of samples for each ind
numSamplePerInd = zeros(numel(filesProc), 1); %larger init to be sure
for i = 1 : numel(filesProc)
filename = filesProc(i).name;
ind = str2double(getIndName(filename));
numSamplePerInd(ind) = num... |
48d7fa7a3be78e344a0cd65cd27e426e409acd4ce776a8e7e53d1ccc71664cc2 | MATLAB | 444 | 10 | function [meanFiringRateMap] = ml_placefield_meanfiringratemap(spikeCountMap, dwellTimeMap)
% Compute the mean firing rate map, lambda(x,y)
%meanFiringRateMap = imgaussfilt(spikeCountMap,4)./ imgaussfilt(dwellTimeMap,8);
meanFiringRateMap = spikeCountMap ./ dwellTimeMap;
% There should be NANs for bins... |
5b03d41c4459c2a6aa753d3c679bfeeb3bbc89c4c2f3b9722267e46c830c0c96 | MATLAB | 444 | 20 | function out = BoxResize(in, f)
% out = BoxResize(in, f)
%
% Resize the boxes by a factor f
[nR nC] = BoxSize(in);
newR = f .* nR;
newC = f .* nC;
addR = round((newR - nR) ./ 2);
addC = round((newC - nC) ./ 2);
% For too small factor, only happens when even number
addR(addR * -2 == nR) = addR(addR * -... |
70b010032c3c75dec37e5b6013dbda868c6305ccc320123cfaaaefe2b9d0891d | MATLAB | 444 | 12 | function similarity = BlobSimBoW(a, b, image, simParams)
% Calculate textureHistogram intersection for similarity measure
% We abuused texture for Bag of Words histogram
bowSim = sum(min(a.textureHist, b.textureHist));
% We also want a size similarity
imSize = size(image,1) * size(image,2);
sizeSim = (imSize ... |
d01e31780d9718ed079db01cc88bce6e98c9e8df1607fa57639c1bb0fba10593 | MATLAB | 444 | 6 | addpath(genpath('/home-new/fym313/MATLAB/MuLaNA_External/CellReg-master/.'));
addpath(genpath('/home-new/fym313/MATLAB/MuLaNA_External/CNMF_E-master/.'));
addpath(genpath('/home-new/fym313/MATLAB/MuLaNA_External/MiniscopeAnalysis_CNMF_E/.'));
addpath(genpath('/home-new/fym313/MATLAB/MuLaNA_External/NoRMCorre/.'));
addp... |
f14e34f1a3ed158bd9ca16caa66307247cc4782a6c6162b667a9ae28c7667396 | MATLAB | 444 | 15 | function mulana_project_list()
% This code lists all of the available projects for a user
[projectsAvailable, ~] = mulana_project_helper_get_list();
if isempty(projectsAvailable)
fprintf('Apparently there are no projects, but there were when I made this!\n');
else
fprintf('The following projects are available... |
b7ba4d1c46ee6f84d7a24bd026c2830c037bf33978377ea664de9c4373d8c35a | MATLAB | 446 | 19 |
function class_info=gen_class_info_pascalcontext()
class_info=[];
class_names=load('./pascalcontext_class_names.mat');
class_names=class_names.class_names;
class_info.class_names = class_names;
class_info.class_label_values=uint8([0: (length(class_names)-1)]);
class_info.background_label_value=uint8(0);
class_info... |
456e1f04854230fa8a50992fcbf665cdcf025edcbec46e18e3fe82e27fb19c77 | MATLAB | 447 | 24 |
function [file_names, file_infos]=my_list_file(ds_dir)
file_infos=dir(ds_dir);
file_names=cell(0, 1);
valid_sel=false(length(file_infos), 1);
for file_idx=1:length(file_infos)
if file_infos(file_idx).isdir
continue;
end
one_file_name=file_infos(file_idx).name;
file_names{file_i... |
fb40ca3c2cc671822895084d608b7cda2391e0edc10259c3c5ce74928485e55a | MATLAB | 447 | 15 | % mglGetWindowPos.m
%
% usage: windowPos = mglGetWindowPos
% by: Justin Gardner
% date: 07/29/17
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Returns the position of a windowed context opened with mglOpen(0)
% returned position will be in pixels... |
279118f5c270b593d3c6332fed204502e708793aeea71273f3da33dbf92dbc0c | MATLAB | 449 | 13 | function pchan=SONPhyChan(fh, chan)
% SONPHYCHAN returns the physical channel (hardware port) for a channel
% in a file
%
% PCHAN=SONPHYCHAN(FH, CHAN)
% where FH is the SON file handle and CHAN is the file channel number.
% PCHAN is negative for channels with no hardware port
%
% Author:Malcolm Lidierth
% M... |
3db6f50a88b6c41b96a4bb38a8baab6226a46bfff8acc9406f7c39d2fdbaa1e6 | MATLAB | 449 | 12 | function handle=SONOpenNewFile(str, extrabytes)
% SONOPENNEWFILE (obsolete) creates a new SON file and returns the handle
%
% HANDLE=SONOPENNEWFILE(STR, EXTRABYTES)
% where STR is the file name (with path). EXTRABYTES sets the size of the
% optional user data area
%
% Author:Malcolm Lidierth
% Matlab SON libra... |
716c4c60d05dc4f3367948c60acfdd8765f2e7ad0e8406c68c6189380b4f531e | MATLAB | 449 | 17 | function [validinds, means, sems] = binnedsemcurve(data, filledbins, centers, binmin,varargin)
binmin = 5;
% process varargin and overwrite default values
if (~isempty(varargin))
assign(varargin{:});
end
for b = 1:length(centers)
binavg1(1,b) = mean(data(filledbins(:,b),b));
binsem1(1,b) = std(da... |
86cf9818cb8176529b0efa705e8efb7f694dfcfb2864854f7b8354c8f5e7d3e5 | MATLAB | 449 | 15 | function flag=SONLatestTime(fh, chan, sTime)
% SONLATESTTIME is used to flush data to disk
%
% FLAG=SONLATESTTIME(FH, CHAN, STIME)
% where FH is the SON file handle, Chan is the channel, and STIME is the
% latest valid time in clock ticks
%
% See CED documentaion
%
% Author:Malcolm Lidierth
% Matlab SON lib... |
bfb98d9d77355672bf1bdb859322bbefdc06618dbc85d860185e91f85fbc120e | MATLAB | 449 | 14 | function [folderPath, overwriteFlag] = createResultFolderNoOverwrite(parentDir, numDir, string)
overwriteFlag = 0;
folderPath = [];
existFolder = searchFolder(parentDir, string);
expNum = find_expnum(numDir, '_');
folderName = strcat(expNum,'_',string);
[success,message] = mkdir(parentDir,folderName);
if ~success
... |
0a28f76a38ac46bb1242e3fbac9b3cb2ca08f36ba15bb5e1d7f5ad4dfad2a8b2 | MATLAB | 450 | 23 | function lab= convertLab(lab,nlab)
lab=char(lab)
%keyboard
for i=1:nlab
ilab=lab(i,:);
ind= strfind(ilab,'VOL');
ilab(ind:ind+2)=[];
ind= strfind(ilab,'resA');
ilab(ind:ind+3)=[];
ilab = char(ilab)
ind= strfind(ilab,'_norm');
if length(ind) > 0
ilab(ind:ind+4)=[];
ilab=... |
6b89f5e2a0cc2b87a738fdee2906b6e6dda477c9811cdd4653675c4127719841 | MATLAB | 451 | 20 | function fmri_analysis(DATA,ROI,AddInfo)
%
% This Aedes plugin does a basic fMRI analysis.
%
if AddInfo.isDataMixed || ndims(DATA{1}.FTDATA)<4
error('Input data has to have at least 4 dimensions.')
end
% Get brain mask if available
if ~isempty(ROI) && any(strcmpi({ROI(:).label},'mask'))
roi_ind = find(strcmpi({ROI(... |
72d9c35d3c4e2908e6ab6b97fa923e6adb70962065ca40e9b5121ecf836fdbbe | MATLAB | 451 | 19 |
function class_info=gen_class_info_sal()
class_info=[];
class_info.class_names = { 'background', 'salient', 'void'}';
void_class_value=255;
class_info.class_label_values=uint8([0, 1, void_class_value]);
class_info.background_label_value=uint8(0);
class_info.void_label_values=uint8(void_class_value);
% ad... |
853f581833b18925c6eb4274a5045839b6173972dedd7c47e7127943b4087a3c | MATLAB | 451 | 15 | %% plot omega~eta
% omega = sqrt(Delta_E.^2 + (Delta_I - b).^2);
% get eta (diff)
rootFolder = "figure_linReg/";
data = readFilename(rootFolder+"agree/*_*_*_*_*_*.png",'%f_%f_%f_%f_%f_%f');
data( all(~data,2), : ) = [];
diff = 2;
idx = data(:,4) < diff & data(:,4) > 1/diff;
roi = data(idx,:);
omega = sqrt(roi(:,1).^2 +... |
9fe2bfa9173d9e8420dc57a09eda2d0e4d1858dd6f1c17b200f8e330e287d603 | MATLAB | 451 | 14 | function minmax=SONYRange(fh, chan)
% SONYRANGE returns the expected minimum and maximum values for a channel
%
% MINMAX=SONYRANGE(FH, CHAN)
%
% MINMAX is a 2-element vector containing the minimum and maximum values
%
% Author:Malcolm Lidierth
% Matlab SON library:
% Copyright © The Author & King's College London 20... |
ca57b86ce1a7f983b3c386357cc2febfe0430af06543fefe5d8bcd1a5c9bdc34 | MATLAB | 451 | 24 | %% setup
clear;clc;close all
A = fopen('Z:\1_Maxwell_Gagnon\ProjectData_Sriram\Firing_spike_count\RecordA0.txt');
C = fscanf(A, '%f');
start = 1;
dispLen = length(C) / 300;
addition = 200;
i = 1;
%% Get Frames
while start+dispLen+addition < length(C)
plot(C(start:start+dispLen+addition))
frames(i) = get... |
c9958a94f9dbbdb69b12e3e9522acbcaa1e02a339bec8aa1ff27b895b6080d90 | MATLAB | 452 | 19 | function [spk_delta] = spk_t2delta_vector(spk_t,data_len)
%spk_t2delta_vector.m
%5/22/22
spk_delta = zeros(data_len,1); % column to save memory
% this is spk_t2delta convention
tmp_spk = 1+round(1000*spk_t);
% will cut of anything trailing if exceeds bounds after rounding
spk_delta(tmp_spk(tmp_spk <= data_len)) = 1;... |
e50f03c5ab9af882825f7b4eb7ee288ff5ad68fe8c0e17286dd53b2b224a1c8a | MATLAB | 452 | 17 | function imout = demons_prep(img, mag, denom)
% create feature maps good for demons
% Jinghao Lu, 05/11/2017
if nargin < 2
mag = 20;
end
if nargin < 3
denom = 3;
end
ithres = (max(img(:)) + min(img(:))) / denom;
tmp = sigmf(img, [mag, ithres]);
% tmp = sigmf(img, [mag, prc... |
aa75d6c0e1353c17fd782836a7689faa15127064fe99f9bc1571d52e1e2507e6 | MATLAB | 453 | 14 | function ml_nlx_mclust_convert_clusters_to_muzzis(mclustClustersFilename, outputMuzzisFilename)
data = load(mclustClustersFilename, '-mat');
Muzzio_Colours = data.MClust_Colors;
numClusters = length(data.MClust_Clusters);
Muzzio_Clusters = {};
for iCluster = 1:numClusters
Muzzio_Clusters{... |
a46e0f6bb27ab6ae61259b396a424e675c0d96abb73d3eec876e028c0f0f7f52 | MATLAB | 454 | 17 | function executable = vgrid
% VGRID is a helper m-file to locate the binary executable
f = mfilename('fullpath');
[p, f, x] = fileparts(f);
% construct the full path to the binary executable
executable = fullfile(p, 'bin', lower(computer), 'vgrid');
if ispc
executable = [executable '.exe'];
end
if ~exist(executa... |
c18d09d5f744c067aa2e2c31d90f08ac0716b04d008cb347371548d3b348d641 | MATLAB | 454 | 12 | function [handles, seqs_removed] = RemoveFlyEvent(handles,fly,f0,f1)
% remove all suspicious sequences involving fly in frames f0 to f1
% splintered from fixerrorsgui 6/23/12 JAB
seqs_removed = [];
for i = 1:length(handles.seqs)
if ismember(fly,handles.seqs(i).flies) && f0 <= min(handles.seqs(i).frames) && ...
... |
c30ef8c015f040a5f11f20c9debb400445c93b58e562647243d5d67d1d93d6a4 | MATLAB | 454 | 14 | function ensure_file_does_not_exist(raw_file_path)
if isempty(raw_file_path) ,
error('File path cannot be empty') ;
end
file_path = absolute_filename(raw_file_path) ;
if isempty(file_path) ,
error('File path cannot be empty') ;
elseif exist(file_path, 'file') ,
%system_from_l... |
01329488a166cc8a0b34e2e8eeedf0619c0609496adfffce8b6bdca6895e171c | MATLAB | 455 | 22 | function out = onlineripfilter(raw)
window = 19; %samples
gi_dec = .2;
gi_inc = 1.2;
%initialize with average of first 19 samples
filt = nan(length(raw),1);
filt(window) = mean(raw(1:window));
for i = 20:length(raw)
if raw(i) > filt(i-1) % envelope increasing
filt(i) = filt(i-1) + gi_inc*(abs(raw(i))-fi... |
0314eb52bba6bcfae6c88d1a9ea8a4f2265ca3d2b33dc943ccf3fd64efc49b63 | MATLAB | 455 | 17 | function usPerTime=SONGetusPerTime(fh)
% SONGETUSPERTIME returns the tick interval in units of SONTimeBase()
% USPERTIME=SONGETUSPERTIME(FH)
% FH SON file handle
%
% See also SONGETTIMEPERADC, SONCHANDIVIDE
% Author:Malcolm Lidierth
% Matlab SON library:
% Copyright © The Author & King's Co... |
8718db69f4976bae04665872cd2d42f3cb908c20cd02328bd5fd4d6450ccd31e | MATLAB | 455 | 29 | function ynn_v = ValNLSprlNLD(Imat_v,dsr_init,nn_stat,nn_dyn,Xi,Ai,tv,no)
u_v = Imat_v;
y_s_v = sim(nn_stat,u_v);
y_d_init = dsr_init - y_s_v(:,1);
X = tonndata(u_v,true,false);
yv = nn_dyn(X,Xi,Ai);
yn = zeros(no,tv-1);
for i = 1:tv-1
yn(1:no,i) = yv{i};
end
ynn_v = zeros(tv,no);
ynn_v(1,1... |
65ae0c859fd51282c93d3047fbc6325dc2cf7f8c756966abe26f8a5fb53aee56 | MATLAB | 456 | 22 | function [ISI] = getISI(delta_mat,varargin)
%getISI.m
% 5/7/22
n_trials = size(delta_mat,1);
switch iscell(delta_mat)
case false
isiFn = @(x) diff(find(delta_mat(x,:)));
case true
isiFn = @(x) diff(find(delta_mat{x,:}));
end
if nargin == 1 || ~varargin{1}
ISI = cell2mat(arrayfun(@(x) isi... |
9153320f7ecbac310658ea20dc34a6a5c7815ced7bfecfe2e1efe7a0487a8fe8 | MATLAB | 456 | 13 | function state=SONIsSaving(fh, chan)
% SONISSAVING returns the save state for a specified channel
%
% STATE=SONISSAVING(FH, CHAN)
% where FH is the SON file handle and CHAN is the channel number
% (0 - SONMaxChan()-1)
% Returns 0 if not saving, 1 if saving or a negative error code
%
% Author:Malcolm Lidierth
... |
9a39f4b3d41f2322ecf974246f65541065649db942ebb4539626c3d4470a0e1f | MATLAB | 456 | 20 | function [frame] = plotSFPs(obj)
% Plot the combined spatial footsprints of this trials neurons
[frameWidth, frameHeight] = obj.getScopeVideoDimensions();
numNeurons = obj.getNumNeurons();
% the frame we will make
frame = zeros(frameHeight, frameWidth);
for iNeuron = 1:numNeurons
neuron = obj.getNeuronById(iNeur... |
6c3968b0ecac2eb904900b269bdaefc5b22a2fb49633b91266ca09c7b8eb010c | MATLAB | 457 | 20 | function[final_ids]=make_final_ids(final_red_vect,final_ident)
% function to make sure that mcherry==1 and tdtomato==2
final_ids=nan(length(final_red_vect),1);
count=1;
for i =1:length(final_ids)
if final_red_vect(i)==0
final_ids(i)=0;
elseif final_red_vect(i)==1
if final_ident(count)==1
... |
e6bdb3df304c4e70297be0723e951459d98dde1186eb0e4eb02d3ae3d9a287ac | MATLAB | 457 | 13 | function no_weight_edges = get_edge_pairs(number_of_behaviors, with_self)
%this generates all possible transition pairs (with and without out self
%edges)
if nargin < 2
with_self = false;
end
no_weight_edges = fliplr(combvec(1:number_of_behaviors, 1:number_of_behaviors)');
if ~with_self
... |
f4e442b5eeb8a4424eef57f65384d71d8257f72ae1b1233504589f0b65ec2f9a | MATLAB | 457 | 10 | % Example of mixed integer problem
% This example corresponds to MEIGO toolbox example: ex3.m
% http://gingproc.iim.csic.es/meigo.html
function [F g]=matlabMINLP(x)
F = x(2)^2 + x(3)^2 + 2.0*x(1)^2 + x(4)^2 - 5.0*x(2) - 5.0*x(3) - 21.0*x(1) + 7.0*x(4);
g(1) = x(2)^2 + x(3)^2 + x(1)^2 + x(4)^2 + x(2) - x(3) + x(1) - x(... |
22c12c5d2e103e4c2cee66e68b21011a8e4e86c24684268a0bafad0ea5c2428f | MATLAB | 458 | 15 | function [newVectors, meanValue] = remmean(vectors);
%REMMEAN - remove the mean from vectors
%
% [newVectors, meanValue] = remmean(vectors);
%
% Removes the mean of row vectors.
% Returns the new vectors and the mean.
%
% This function is needed by FASTICA and FASTICAG
% @(#)$Id: remmean.m 8776 2013-11-14 09:04:48Z ro... |
566b4ae91fc4472280ef18adb9bec192397f63a4b01ee12b3a2baed7f6ebc970 | MATLAB | 458 | 14 | function interleave=SONChanInterleave(fh, chan)
% SONCHANINTERLEAVE Returns the channel interleave factor for ADCMark channels
% in SON V6 or above
% INTERLEAVE=SONCHANINTERLEAVE(FH, CHAN)
% FH SON File Handle
% Chan Channel number
%
% Author:Malcolm Lidierth
% Matlab SON... |
6dca9c00c8603fef0952e57f1d753fb956c8d71036e9dd5b95527dbd86565f4b | MATLAB | 458 | 15 | % loadBD.m
function [BDTrns, burstEl] = loadBD(folder, fName)
% startFolder = pwd;
% cd(folder)
filename = fullfile(folder, fName);
load(filename);
burstEl = find(~cellfun('isempty', burst_detection_cell));
BDTrns = [];
for k = 1:length(burstEl)
BDcurElec = burst_detection_cell{burstEl(k)};
NumBcurElec = size(B... |
3a636cf568adbe439bfdcec60b51e7b003d487048b80a4f5dc58010625a42982 | MATLAB | 459 | 29 | %
% The norm used for normalizing central matrices.
%
% PARAMETERS
% data_decomposition
% x Central matrix
%
% RESULT
% pivot The pivot value
%
function [pivot] = pivotize(data_decomposition, x)
pivot = 1;
if ~data_decomposition.n
if data_decomposition.l
a = diag(x);
a_nonzero = a(a ~= 0);
... |
4f904825e72121d9517092cdaafa722e184b8e5d04652ea2bb70d127ce254899 | MATLAB | 459 | 18 | function Data= TDMS_read(filename)
%TDMS_READ Summary of this function goes here
% Detailed explanation goes here
if ~exist(filename,'file')
error('The file specified for tdms reading doesn''t exist, FILENAME: %s',filename);
end
rawdata=TDMS_readTDMSFile(filename);
ChannelName=rawdata.chanNames;
Data=rawdata.dat... |
84565df8e0532d2f3824f6b39fcf03ae40570ebdb325df5902b92c6e3b4842a4 | MATLAB | 459 | 10 | % mglBindFrameBufferObject.m
%
% $Id: mglBindFrameBufferObject.m cgb $
% usage: mglBindFrameBufferObject(fboObject)
% by: Christopher Broussard
% date: 09/07/10
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Binds a frame buffer object to the current O... |
968e938cc4569b9755a0430f50feec72330e04546ba0161903e313f1c5838b62 | MATLAB | 459 | 15 | function normedResponse = normMax(response)
% Function to set max height of response to 1
%
% normedResponse = normMax(response). See also normSum.m
%
% INPUT:
% response : (vector or matrix) pRF time series (time points by pRFs)
%
% OUTPUT:
% normedResponse : (vector or matrix) normalized pRF time se... |
ae71cc4ce4fe0d68e5d502c1c8adfb929de0e68d441ed2abf8def45dbee6c4b0 | MATLAB | 459 | 22 | function [] = plotROI(probe)
%PLOTROI Plots the perimeter of the ROI
% plots the perimeter of the ROI.
hold on
% Add the first xy coordinate to the matrix
first_xycoor = probe.roi(1,:);
perimeter_coors = [probe.roi; first_xycoor];
% Plot the perimeter.
plot(perimeter_coors(:,1), perimeter_coors(:,2), 'k--','Lin... |
f7310da748e4b2338f91d9cc60e4cfe8004c021d428dd46316f8d191cd50dc81 | MATLAB | 459 | 16 | %%
cleanTracks = masterData.cleanTracks
TimeZ2 = sum(vertcat(cleanTracks.TimeInZ2))
TimeZ1 = sum(vertcat(cleanTracks.TimeInZ1))
TimePI = (TimeZ2 - TimeZ1)./(TimeZ1 + TimeZ2)
%%
DistZ2 = sum(vertcat(cleanTracks.DistInZ2))
DistZ1 = sum(vertcat(cleanTracks.DistInZ1))
DistPI = (DistZ2 - DistZ1)./(DistZ2 + DistZ1)
%%
L... |
647af1ee74c3bb94a3ee276c710f7f2724d3d65a602e4db2ce03312c1c23fea9 | MATLAB | 461 | 11 | function [jointEntropy] = ml_alg_joint_entropy_images(Ia, Ib)
% Ia and Ib must be discrete valued
indrow = double(Ia(:)) + 1;
indcol = double(Ib(:)) + 1; %// Should be the same size as indrow
jointHistogram = accumarray([indrow indcol], 1);
jointProb = jointHistogram / numel(indrow);
indNoZero ... |
a892a4aa82ff27dbd99dc20cd38ffb52918813b0e203177fbb67961c38ef7b63 | MATLAB | 461 | 16 | function MaxTime=SONChanMaxTime(fh, chan)
% SONCHANMAXTIME returns the sample time for the last data item on a channel
%
% MAXTIME=SONCHANMAXTIME(FH, CHAN)
% where FH is the SON file handle
% CHAN the channel (0-SONMaxChannels()-1)
%
% MAXTIME is returned in clock ticks
%
%
% Author:Malcolm Lidierth
%... |
f32670086bda8b37622636bead6aa3a701c7ef7eb8834d49054292d2735adadc | MATLAB | 461 | 19 | % Example of mixed integer problem
% This example corresponds to MEIGO toolbox example: ex2.m
% http://gingproc.iim.csic.es/meigo.html
global k1=0.09755988;
global k3=0.0391908;
global k2=0.99*k1;
global k4=0.9*k3;
function [F g]=matlabNLP(X)
F=-x(4);
%Equality constraints
g(1)=x(4)-x(3)+x(2)-x(1)+k4*x(4).*x(6);
g(2)... |
da2d9319b9b00cdfb685d680ecedee01a234d49dd8ed1c7fcd9719ff0c953ecd | MATLAB | 462 | 27 | function up_idx = eventedgefinder_HERE(data,threshold,up,Num)
if size(data,2)==1;data=data';end
switch up
case 1
A=find(data>threshold);
case -1
A=find(data<threshold);
end
if ~isempty(A)
idx= find(diff(A)~=1);
start_idx = [1 idx+1];
end_idx= [idx numel(A)]... |
ec3c6dfa598fdce96eb0f7b7ebf93258619986f9ded182a6baac1e7e6235f421 | MATLAB | 462 | 19 | %
% Compute local prediction.
%
% PARAMETERS
% method Prediction method
% a Adjacency/biadjacency matrix
% at (e*2) Each row is a vertex pair (i,j) for which to compute a prediction
% format
% weights
%
% RESULT
% predictions{submethod} (e*1) Prediction scores
%
function [predictions] = prediction_local_compute... |
44b24adfe542d483da458269d420c2de001337ecd94ce4b1111196e906d08943 | MATLAB | 463 | 17 | function results = vl_test_hikmeans(varargin)
% VL_TEST_IKMEANS
vl_test_init ;
function s = setup()
rand('state',0) ;
s.data = uint8(rand(2,1000) * 255) ;
function test_basic(s)
[tree, assign] = vl_hikmeans(s.data,3,100) ;
assign_ = vl_hikmeanspush(tree, s.data) ;
vl_assert_equal(assign,assign_) ;
function test_elka... |
1d10614c0e627f2e068dacab757aede178f8a315b7f2702f94d70d818efe8a98 | MATLAB | 464 | 18 | function view(tree)
% XMLTREE/VIEW View Method
% FORMAT view(tree)
%
% tree - XMLTree object
%__________________________________________________________________________
%
% Display an XML tree in a graphical interface
%__________________________________________________________________________
% Copyright (C) 2002-20... |
63b70eb532987d7a0b72ea21350ba80632678e123fe48098ea8223bf93d0a092 | MATLAB | 464 | 19 | function mask = createCirclesMask(varargin)
narginchk(3,3)
if numel(varargin{1}) == 2
% SIZE specified
xDim = varargin{1}(1);
yDim = varargin{1}(2);
else
% IMAGE specified
[xDim,yDim] = size(varargin{1});
end
centers = varargin{2};
radii = varargin{3};
xc = centers(:,1);
yc = centers(:,2);
[xx,yy] = ... |
ce58f272ab28cd7d034510a5292e594b762ec49edaa2c207479ed4386dbe34fb | MATLAB | 464 | 24 | %
% Save the full dataset (not split) in a MAT file. If timestamps are
% present, the data is sorted.
%
% PARAMETERS
% $input Input filename (out.*)
% $output Output filename (*.mat)
%
% INPUT FILES
% $input
%
% OUTPUT FILES
% $output Matlab file
% T The data in triple/quadruple format as found in the out.* f... |
4c2579657e5e61bfa1bb3fc1b494283cc0c8e2f4895680f3e159324dd06d24bb | MATLAB | 465 | 15 | function [flipCombinations] = flip_combinations(numTrials)
% Returns a matrix of unique combinations of 0s and 1s. Each row
% is one combination.
flipCombinations = zeros(1,numTrials);
for i = 1:numTrials %6
s = zeros(numTrials,1);
s(1:i) = 1;
p = unique(perms(s), 'rows');
... |
5cb61727b6a8a92cf2c8d62c9919eafe7b2891f228612978a495bd4a50953fc9 | MATLAB | 466 | 10 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
function [mmap2] = get_map_registered_cell_names_to_registered_cell_id(CellRegTable)
if isempty(CellRegTable)
error('There is no cellreg table to retrieve names from.\n');
end
uniqueRegisteredCellNames = uni... |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.