sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
0115d66d2e579db2ddc964c5617ca74aa74c99b66ac6dba586fb2ed9227aa177 | MATLAB | 550 | 15 | function stats_combined = stat_summary_seaky(H0_ctrl_403)
%function stats_combined = stat_summary(H0_atrial_10, H0_atrial_25, H0_atrial_50, H0_10_25, H0_10_50, H0_25_50)
sz = [1 3];
varTypes = {'string','double','double'};
stats_combined = table('Size',sz,'VariableTypes',varTypes);
stats_combined.Properties.Variabl... |
0ec11638c4e15a6c06aa3f04f4d57060022fc319414ec55d12e6d38d45e2c32c | MATLAB | 550 | 16 | function []=examine_outliers(cell_stat,red_vect,chosen_combination,threshold,intensities,info,flatwave_identities,combination_results)
silhouettes=combination_results.all_silhouettes{chosen_combination}
outliers=find(silhouettes<threshold);% find outliers in isred coordinates
centroids=combination_results.centroids... |
87913235b20b67fdfe2882d73e6196a18745d01518ce67f739119823b263f742 | MATLAB | 550 | 23 | clear all
close all
load('ff_values.mat');
value_list = [.25 .5 .75 1 1.25 1.5];
[~,~,stats] = anova2(ff_values',1,"off");
c1 = multcompare(stats);
tbl1 = array2table(c1,"VariableNames", ...
["Group A","Group B","Lower Limit","A-B","Upper Limit","P-value"])
% d = randi(10, 20, 3);
% figure(1)
... |
7d3064ba34b2979c8386cc435e167781bb7c08f3c03b8f397b8b9c35f89e9c1d | MATLAB | 552 | 15 | function p_value=stat_test(data_1,data_2)
%%%% data_1 and data_2 should be column vector with one column
[mean_data_1,~,~]=bootstrap_mean_and_ci(10000,0.05,data_1(:,1));
[mean_data_2,~,~]=bootstrap_mean_and_ci(10000,0.05,data_2(:,1));
x1_bar_expt=mean_data_1;
x2_bar_expt=mean_data_2;
n1=size(da... |
a6c5eb77c239c0e45ccc945fbdc798aaa6424fc208f58fcdab720f702711e729 | MATLAB | 552 | 23 | % mglIsMrToolsLoaded.m
%
% $Id:$
% usage: mglIsMrToolsLoaded()
% by: justin gardner
% date: 04/20/14
% purpose: Test whether mrtools is in path or not
%
function tf = mglIsMrToolsLoaded()
% check arguments
if ~any(nargin == [0])
help mglIsMrToolsLoaded
return
end
if ~exist('mrParamsD... |
31b847f8407678442784ee117d13245787eb0bd4a56711756965944944715378 | MATLAB | 553 | 14 | function [quality] = ml_cai_quality_led_position_difference(x, a)
% Compute the difference in the position between frames
% This assumes that the frames are sequential and about the same frame rate
dv = diff(x); % dv has one less element than ledPosPixel
dvMedian = median(dv);
dvMAD = median( abs(dv - dvMedian) );
dvM... |
33449966a9475f2dfd2892aaebccbea4082eabbb702c2953f150f31fef40ae7b | MATLAB | 553 | 16 | function ensure_folder_does_not_exist(raw_file_path)
if isempty(raw_file_path) ,
error('File path cannot be empty') ;
end
file_path = absolute_filename(raw_file_path) ;
if isempty(file_path) ,
error('File path cannot be empty') ;
elseif strcmp(file_path, '/') ,
error('Not goi... |
bf38aab9e4879dee566989ac9f46128980f5f64384b7cd51461c3e0e586485d0 | MATLAB | 553 | 12 | function position = WAIT(device)
% Wait for motion to stop
while(0 ~= device.IsMoving('x') || 0 ~= device.IsMoving('y') || 0 ~= device.IsMoving('z') || 0 ~= device.IsMoving('u') || 0 ~= device.IsMoving('v') || 0 ~= device.IsMoving('w'))
pause(0.1);
end
% Wait for axes to be on target
... |
cb1c879bb9ce75f2b81b4cc3937226b70e9d5f7216602c7a8d61ccde7b36f578 | MATLAB | 553 | 17 | rectWidth = 1;
rectHeight = 1;
nSamples = 1000000;
anglesBias1 = ml_alg_center_out_angle_continuous_bias(rectWidth, rectHeight, nSamples);
anglesBias2 = ml_alg_center_out_angle_continuous_circle_bias(nSamples);
edges = 0:1:360;
figure
subplot(1,2,1)
histogram(anglesBias1, edges)
title(sprintf('Picked from uniform re... |
48b34be95a842e992d11658ac6e96428511eb78db33c0c7542da58866879e70a | MATLAB | 554 | 27 | classdef My_copy_layer < dagnn.ElementWise
properties
end
methods
function outputs = forward(obj, inputs, params)
outputs = inputs ;
end
function [derInputs, derParams] = backward(obj, inputs, params, derOutputs)
derInputs = derOutputs ;
derParams = {} ;
end
% -----... |
e193a9107cd17c25cfbaf314df84d90d69c67f6361a0014151a3e78baeff901a | MATLAB | 554 | 16 | function [dwellTimeMap] = ml_placefield_dwelltimemap(xi, yi, ts_s, nbinsx, nbinsy)
numSamples = length(xi);
% Check the uniformity of the timestamps
dts_s = diff([0; ts_s(:)]);
% small correction
dts_s(1) = median(dts_s(:));
% Perform the dwell time by hand because I don't trust MATLAB... |
2c600f2ebcac94d1318f965c55299a8ccbdab2ec8f6350ad2153b28c5e5460af | MATLAB | 555 | 20 | function [entropyX] = ml_it_entropy(x, binMethod)
if strcmpi(binMethod, 'uniformly_spaced')
edges = ml_it_edges_x_uniformly_spaced(x);
elseif strcmpi(binMethod, 'uniform_density')
edges = ml_it_edges_x_uniform_density(x);
else
error('Invalid bin type (%s)', binMethod);
end
... |
a512f83f0e6594590dec91f23926feca6e05e9803068692ff4c4e118158fac74 | MATLAB | 555 | 20 | function [ theta_new, alpha_new ] = conjugate_rotational_axis( theta, alpha )
% function [ theta_new, alpha_new ] = conjugate_rotational_axis( theta, alpha );
%
% Function to return the conjugate rotational axis so that it produces a
% mirroring brain response about the mid-sagittal plane. Given theta and
% alp... |
f86436801e0d2777aa103d693e5eb48ead4f61a126720f041b90e0cd2e07b33d | MATLAB | 555 | 17 | function handles = fix_DeleteFly(handles,fly)
% find birth and death event for this fly, if it exists
% splintered from fixerrorsgui 6/21/12 JAB
handles = fix_RemoveBirthEvent(handles,fly);
handles = fix_RemoveDeathEvent(handles,fly);
fns = fieldnames(handles.trx(fly));
for i = 1:length(fns),
fn = fns{i};
handles... |
1c806b893ea3898137b487ce4addf704d44eef039ec24d6fe9e071c1b9e184c7 | MATLAB | 556 | 24 | % userSelectTrial.m
%
% Function that brings up the user interface for them to select the trial
% folder to process.
%
% INPUTS:
% none - but prompts user through folder-selection gui
%
% OUTPUTS:
% uTrialPath - full path of selected trial folder
% curDir - present working directory
%
% CREATED: 5/21/19
% UPDATE... |
e6fc06f4b13ad0369151dc532a331fc1f0004385b74279d52fe05e752b6e7a8c | MATLAB | 556 | 10 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
function [filteredPredictionDatasets] = filter_prediction_datasets(predictionDatasets, params)
filteredPredictionDatasets = cell(length(predictionDatasets),1);
for iDataset = 1:length(predictionDatasets)
predictionDat... |
f33022ed69f1e598983c400d4d29ae3b0669a94bfdf3b3c4eb68bdd62cd16322 | MATLAB | 556 | 25 |
function net_run_opts=gen_net_run_opts_basic()
net_run_opts=[];
net_run_opts.global_init_fn=[];
net_run_opts.epoch_init_fn=[];
net_run_opts.epoch_finish_fn=[];
net_run_opts.batch_init_fn=[];
net_run_opts.batch_finish_fn=[];
net_run_opts.batch_info_disp_fn=[];
net_run_opts.epoch_info_disp_fn=[];
net_run_opts.batch_... |
21f9e97f792360f0a5adbc06dc0fd15fbdfabb85eee074cafb81448aa4088071 | MATLAB | 557 | 22 | ShowUnitsQs = {'tags[x100]'; 'QA'; 'POm'};
tags = [0 1 0 0];
key = 'tags[';
Larray = length(tags);
Lkey = length(key);
show=1;
if find(strncmpi(ShowUnitsQs,key,Lkey)),
it = strfind(ShowUnitsQs,key);
itrow = min(find(~isempty(it)));
tagstr = cell2mat(ShowUnitsQs(itrow));
showtags = tagstr(... |
4800628be258a4ff933ada691e275c4fd3ab9823f27028fd60d6c02200c565d0 | MATLAB | 557 | 25 | %
% Compute the number of lines in the definition of a network, i.e.,
% the number of lines in the out.* file. This is different from the
% volume for networks with multiple edges without timestamps, because
% these networks aggregate multiple edges into one line.
%
% PARAMETERS
% $network
%
% INPUT
% dat/info.$ne... |
4cd708938a60569cb97e212f547fc32b673bc1ed421525d731db32aad2c59315 | MATLAB | 557 | 17 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
function [fieldSets] = helper_load_bfo90_fieldsets_to_record()
fieldSets(1).name = 'all';
fieldSets(1).fieldNames = {'any'};
fieldSets(2).name = 'context1';
fieldSets(2).fieldNames = {'context1'};
fieldSets(3).n... |
520e35ff82f8c594621f1299763b01744eefeda2881796fb3f194ee80683460a | MATLAB | 557 | 29 | function x = calc_FD_HCP_octave(prefix,brain_radius_in_mm)
if nargin < 2
brain_radius_in_mm=50;
end
%% Read the first 6 columns
fileID = fopen(prefix,'r');
tline = fgetl(fileID);
X = [];
while ischar(tline)
tline = strtrim(regexprep(tline,' +',' '));
row = str2double(strsplit(tline, ' '));
row = row(1:6... |
ac8d9c7564f5ebef10ee477cf87d8c53366b82ce08ca0183f9d94f8b5f32da07 | MATLAB | 557 | 15 | function [ track_indecies ] = folder_indecies_to_track_indecies( folder_indecies )
%Converts folder indecies to track indecies
current_folder_index = 1;
track_indecies = zeros(size(folder_indecies));
track_indecies(1) = 1;
for index = 2:length(folder_indecies)
if folder_indecies(index) ~= current... |
bf87217868a7286633f23c99b8d9b2966b37838ca3f097932e5e2f69e7b852d6 | MATLAB | 557 | 19 | function [kspace,data,msg_out]=mge3d_recon(kspace,Dat,procpar)
% This is a custom VNMR k-space reconstruction code for MGE3D data used by
% aedes_readvnmr.
% If called without input arguments, return the list of sequence names that
% this code reconstructs
if nargin==0
kspace = {'mge3d'};
return
end
data=[];
msg... |
d82ac0bb40adfc02ef51f4889566a4dcdfb7e3ff62658012cd27082bad5a246c | MATLAB | 557 | 14 | function smoothed_x = binary_smoothing(x, window)
%smoothes a binary vector over a window (window should be odd)
half_window = floor(window/2);
votes = zeros(size(x));
for current_window = 1:half_window
shift_right = circshift(x, [0, current_window]);
shift_right(1:half_window) = x(1);
... |
eae7197804cb5ef4e37c4020dacedd7b6f8c917f52c70d34957ae2ab775791cc | MATLAB | 558 | 18 | function vector = Blob2Vector(blob, im)
% vector = Blob2Vector(blob, image) creates a vector representation of the
% blob. Each entry for vector(i,:) is the i-th pixel colour-value of the
% blob.
% first crop image
vector = im(blob.rect(1):blob.rect(3), blob.rect(2):blob.rect(4),:);
% reshape image and mask... |
245c52bd35c73bbeb66188385b0f829615b6fe4010052d78907b5ca61ecb8fdf | MATLAB | 559 | 17 | function p = parent(tree,uid)
% XMLTREE/PARENT Parent Method
% FORMAT uid = parent(tree,uid)
%
% tree - XMLTree object
% uid - UID of the lonely child
% p - UID of the parent ([] if root is the child)
%__________________________________________________________________________
%
% Return the uid of the parent... |
30ed64fbc34ccec3c604d36cd379d913a656756e8a3734f1f83341a8248de523 | MATLAB | 559 | 21 | function a = reshape(b,varargin)
% Overloaded reshape function for file_array objects
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: reshape.m 8776 2013-11-14 09:04:48Z roboos $
if length(struct(b))~=1, error('Can only re... |
bc042a01873f3aa8eea82c5bb6e19b37e9b9e020051b2e1ad5534d916392dbc7 | MATLAB | 559 | 25 | function [val1] = GetValFromImage(Im, coords, xform)
%
% val = GetValFromImage(Im, coords, [xform])
%
% Adapted from dtiGetValFromImage in VISTASOFT (interpolation was eliminated)
% Cesar Caiafa (2017)
if(~exist('xform','var') || isempty(xform))
xform = eye(4);
end
if(size(coords,2)~=3) coords = coords'; end
i... |
d8c7513a02f702b8b895177eddef2a75b63d879f11b4b0a2c84fd2c1edfe96e5 | MATLAB | 559 | 28 |
function class_info=gen_class_info_ade()
class_info_ADE=load('class_info_ADE.mat');
class_info_ADE=class_info_ADE.class_info_ADE;
class_names=class_info_ADE.Name;
class_names{end+1}='void';
class_label_values=uint8([1:150 0]);
class_info=[];
class_info.class_names = class_names;
class_info.class_label_values=... |
39eba239eb747dabe57e6f083df8a60aae7c0e190541d0ca344666827223f912 | MATLAB | 560 | 17 | % mglPrivateListener.m
%
% $Id: mglPrivateListener.m 18 2006-09-13 15:41:18Z justin $
% usage: mglPrivateListener()
% by: justin gardner & Jonas Larsson
% date: 04/03/06
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: plot 2D points on an OpenGL screen ... |
e38ba831e12e8d2b62e10328b2f8fcc9b191ba6b1c2f7453f4a2cbfe624c4d48 | MATLAB | 560 | 18 | % mglPoints2.m
%
% $Id$
% usage: mglPoints2()
% by: justin gardner & Jonas Larsson
% date: 04/03/06
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: plot 2D points on an OpenGL screen opened with mglOpen
% usage: mglPoints2(x,y,size,color)
% ... |
e5a7c2fa190411104d1f1a8c70f3599dca85c9433ce15ee587a0ea28c581f4c7 | MATLAB | 560 | 29 | %
% Labels for combined method/submethods.
%
% RESULT
% labels
% .([method "." submethod]) Readable label of the
% method/submethod combination
%
function labels = get_labels_method_submethod()
labels = struct();
labels.sym_expo = 'SINH';
labels.sym_rato = 'NEU';
labels.sym_polyo = 'POLY';
labels.sym_polyon = 'P... |
b1f7bc48700c0ba55a3012111cbf6197ce41dc3f5ef004853f68d0f39be6bc9f | MATLAB | 562 | 12 | function [section, times] = segmentSeries(A)
A(1) = 0; A(end)=0;
ne0 = find(A~=0); % Nonzero Elements
ix0 = unique([ne0(1) ne0(diff([0 ne0])>1)]); % Non-Zero Segment Start Indices
eq0 = find(A==0); % Zero Elements
ix1 = unique([eq0(1) eq0(diff([... |
3529c691a273edec005b20cbb72d1db5ac51b5219cec02b01522903dc5d77930 | MATLAB | 563 | 20 | function SONSetInitLow(fh, chan, flag)
% SONSETINITLOW sets the initial state on an EventBoth (level) channel
%
% SONSETINITLOW(FH, CHAN, FLAG)
% where FH is the SON file handle and CHAN is the channel number.
% FLAG is 'TRUE' if the first transition is high-to-low, 'FALSE' otherwise.
% No return value
%
% Author:Mal... |
87f7fc83e2951d7732251265ea830d1b9c900bb98b85b6dab23336ce2e5fec92 | MATLAB | 564 | 22 | function chanData = maestro2dat(filename, samplerate)
% Assume sample rate of 50,000
if ~exist('samplerate','var')
samplerate = 50000;
end
%% Load Ephys Data
ephys = openmaestro(filename);
if isempty(ephys)
warning('Something went wrong!')
chanData = [];
... |
a135c13e22098172d8c69e26f386840e6b29b9467b1df91048116a1ed73683aa | MATLAB | 564 | 22 | %
% Please cite this paper if you use any component of this software:
% S. Soltanian-Zadeh, K. Sahingur, S. Blau, Y. Gong, and S. Farsiu, "Fast
% and robust active neuron segmentation in two-photon calcium imaging using
% spatio-temporal deep learning," Submitted to PNAS.
%
% Released under a GPL v2 license.
functio... |
ac21abaf0406890a6f012f18a8011b798c06b42c970a3c3bd7aa9a0cf09c06d6 | MATLAB | 565 | 19 | %Function: transform RGB image to the 8-bit HSV index image for color CENTRIST
%Input:
% rgb_img -RGB image
%Output:
% idx_img -8-bit HSV index image
% Author: Yang Xiao @ IMI NTU (hustcowboy@gmail.com)
% Created on 2013.2.13
% Last modified on 2013.2.14
function [idx_img] = hsv_idx_transform(rgb_img)... |
0626ced13b26c397a8fc8526e66c37b4485d9f869916eabc4cdad5150a11de93 | MATLAB | 566 | 20 | % $Id$
% program: mglPolygon.c
% by: denis schluppeck, based on mglQuad/mglPoints by eli,
% justin, jonas
% date: 05/10/06
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: mex function to draw a polygon in an OpenGL screen
% opened with mglOpen.
% ... |
116bd40aa2d518c2e7048045d27179f721136cf5bea7608f808fc1a6e520ca71 | MATLAB | 566 | 24 | % mglStencilCreateEnd
%
% $Id$
% usage: mglStencilCreateEnd
% by: justin gardner
% date: 05/26/2006
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Ends drawing to stencil
%
% e.g.:
%mglOpen;
%mglScreenCoordinates;
%
%%Draw an oval stencil
%mglSte... |
13f5d0b8c7e23b8ce602fd6b75b288449a8e5a608e4d61e863688e84b8845c16 | MATLAB | 568 | 21 | % VL_DEMO_SIFT_OR Demonstrates SIFT orientation detection
I = vl_impattern('wedge') ;
ur = 1:size(I,2) ;
vr = 1:size(I,1) ;
% distribute frames on a grid
[u,v] = meshgrid(ur(5:10:end-4),vr(5:10:end-4)) ;
f = [u(:)';v(:)'] ;
K = size(f,2) ;
f = [f ; 4 * ones(1,K) ; 0 * ones(1,K)] ;
% detect orienntations
f = vl_sift... |
b78601cc98c1b98cb1433365fb2cd4b072f54eecd9119b338a83b9849c6055c6 | MATLAB | 568 | 12 | % After unzipping the UFARSA.zip into your desired directory, simply run this
% script to add UFARSA to the search path of MATALB.
%
% Author: Vahid Rahmati (December, 2017)
UFARSA_folder = fileparts(mfilename('fullpath'));
addpath(sprintf('%s', UFARSA_folder))
addpath(sprintf('%s%sfunctions', UFARSA_folder, fi... |
10a2b59c93225fa675ede6059e5637b07c06258cdf3b828b8f5a3905f071653f | MATLAB | 569 | 15 | function SONSetFileClock(fh, usPerTime, timePerADC)
% SONSETFILECLOCK sets the basic time units and the clocks per ADC conversion
%
% SONSETFILECLOCK(FH, USPERTIME, TIMEPERADC)
% INPUTS: FH the SON file handle
% USPERTIME the number of microseconds per clock tick
% TIMEPERADC the number of clock ticks ... |
3d91d969da17030e6c6ddd14361b823fd7bd635765c35a12d70f2a9899aae062 | MATLAB | 570 | 19 | clear
close all
clc
addpath(genpath('J:\Data\Matlab'));
%%
% Select the directory to search
directory = uigetdir;
% List all .swc files
fileList = dir([directory, '\*.swc']);
% Loop through each .swc file, copy it and give new extension: .txt
for i = 1:numel(fileList)
file = fullfile(di... |
490b3a79f2c2088cb3d4742c3b7195636c34894873b22ab6faff2a1bc9c177d5 | MATLAB | 571 | 25 | function [Dmat] = JaccardDist(M1,M2)
N1 = size(M1,3);
N2 = size(M2,3);
M1 = single(reshape(M1,[],N1));
M2 = single(reshape(M2,[],N2));
A1 = M1'*M1; a1 = repmat(diag(A1),1,N2);
A2 = M2'*M2; a2 = repmat(diag(A2)',N1,1);
intersectMat = M1'*M2;
unionMat = a1 + a2 - M1'*M2;
JaccardInd = intersectMat./unionMat;
Dmat = 1... |
271d145e34d401f49ee786da602083dfc491180203140d2857859876d5294817 | MATLAB | 572 | 12 | function [ score ] = compare_predicted_and_actual_rates(predicted_rates, observed_events)
%computes a metric to see how predictive our model is against the actual
%observed rates; not used in paper
fps = 14;
dt = 1/(fps*60);
%observed_rates = double(observed_rates)*fps*60; % put it in transitions/min
rd... |
2d90f1196881440aac0cc8eb3d477c72b685d0b2f411b006193efb31963fcd64 | MATLAB | 572 | 19 | <<<<<<< HEAD
function [FMR, FNMR] = computeDET(gmsVector, imsVector, REJngra, REJnira, base)
for ii = 1:length(base)
th = base(ii); % define threshold
FMR(ii) = computeFMR(imsVector, REJnira, th);
FNMR(ii) = computeFNMR(gmsVector, REJngra, th);
end
=======
function [FMR, FNMR] = computeDET(gmsVector, ims... |
52d2f38e58214dab81ecc557288c1e26bc679489b49f20c739febc8fb21b5284 | MATLAB | 572 | 19 | function name = get_user_name()
% GETCOMPUTERNAME returns the name of the computer (hostname)
% name = getComputerName()
%
% WARN: output string is converted to lower case
%
%
% See also SYSTEM, GETENV, ISPC, ISUNIX
%
% m j m a r i n j (AT) y a h o o (DOT) e s
% (c) MJMJ/2007
... |
1ae30dd86a7a86130f20cc9deda20652e21fcd76962448242dd986f56b5abb17 | MATLAB | 573 | 19 | function SONSetADCScale(fh, chan, scale)
% SONSETADCSCALE sets the scale on an ADC channel
%
% SONADCOFFSET(FH, CHAN, SCALE)
% where FH is the SON file handle, CHAN is the channel number and SCALE is
% the new value to be written to the file
%
% An ADC value is converted to a real value as:
% Real value=(16-bi... |
2f547f5016b76fa2238ea9a0e163efe27de0089b0bc7afeef7e37d666680804a | MATLAB | 573 | 14 | function vt_out = f_ListEventClasses()
% List event class for ripple classification. For adding more clasess
% consider including names after position 7.
vt_out = {...
'None';... % Original class 1
'Gamma';... % Original class 2
'Ripple';... % Original class 3
... |
38f1f37f2a5f116af20e0d5d4449c1513e26b40e39cad19534e92b6e35256680 | MATLAB | 573 | 25 | % mglCameraInfo.m
%
% usage: cameraInfo = mglCameraInfo;
% by: justin gardner
% date: 10/07/19
% purpose: Function to get information about connected FLIR cameras
% For verbose info
%
% cameraInfo = mglCameraInfo('verbose=1');
%
% For more detailed info:
%
% ... |
70b025ada21a403445e3b49967c84f69944d99bc507ce1940d9c4e1e849c1305 | MATLAB | 573 | 19 | function colorRGB = varysat(origColor,satValues)
% varies the hue of a specified color
% origColor is n x 3
% satValues is 1 x m, specifying range of saturation
% output is is n x m x 3
%
colorHSV = zeros([size(origColor),length(satValues)]);
for icond = 1:size(origColor,1)
temp = rgb2hsv(origColor(icond,:));
... |
99b0cdb22b871e55d5247080d38638918105366ad4b70455d2bc0955bf0d0e33 | MATLAB | 573 | 24 | function name = get_host_name()
% GETCOMPUTERNAME returns the name of the computer (hostname)
% name = getComputerName()
%
% WARN: output string is converted to lower case
%
%
% See also SYSTEM, GETENV, ISPC, ISUNIX
%
% m j m a r i n j (AT) y a h o o (DOT) e s
% (c) MJMJ/2007
... |
9a850643d03f1d0f4644dc64f19a72c082114b6e4be1ca90baab420f5d6e1168 | MATLAB | 573 | 17 | function [ratio]=get_ratio(cur_onsets,tr,ds_events,ds)
if strcmp (cur_onsets(tr).condition,'SOM')
ratio = ds_events(ds).mch_pop_signal(cur_onsets(tr).peak) / ds_events(ds).tdt_pop_signal(cur_onsets(tr).peak);
if ds_events(ds).tdt_pop_signal(cur_onsets(tr).peak)<0
ratio = 10;
end
elseif strcmp (cur_... |
d4ce1b045a971c3484c948942ec1f12857b3a2ca19fd706c6a3e8f44303429d2 | MATLAB | 573 | 19 | function dTickLen=SONTimeBase(fh, dTb)
% SONTIMEBASE Get or set the base time units for the file
% (usually 1e-6seconds)
% DTICKLEN=SONTIMEBASE(FH, DTB)
% FH SON file handle
% DTB If <= 0 ignored
% >0 the new value to set
% ... |
97f19cfff5a6c00f4c9e83c982918c5f69eca97334999110902b4cfae45b4d49 | MATLAB | 574 | 21 | %
% Please cite this paper if you use any component of this software:
% S. Soltanian-Zadeh, K. Sahingur, S. Blau, Y. Gong, and S. Farsiu, "Fast
% and robust active neuron segmentation in two-photon calcium imaging using
% spatio-temporal deep learning," Submitted to PNAS.
%
% Released under a GPL v2 license.
%
func... |
08f195005ad41915910bb0eaee9fcb730bd55bb950240377f4b4cbd7adb000ba | MATLAB | 575 | 21 | function d=Discriminability(Data)
%caculate d-prime for gonogo task
%Data=[Hit Miss CR FA]
for i=1:size(Data,1)
hitrate=Data(i,1)/(Data(i,1)+Data(i,2));
FArate=Data(i,4)/(Data(i,3)+Data(i,4));
if hitrate==1
hitrate=1-1/(2*(Data(i,1)+Data(i,2)));
end
if hitrate==0
h... |
2becd5273384c7c443c86289386d973e79607a7cea9612fc1702975402deb4d4 | MATLAB | 575 | 18 |
function Av = startAvalanche(avCount, cluster, t)
if size(cluster,1)~=1; cluster = cluster'; end
Av = avalanche;
Av.label = avCount;
Av.size = length(cluster);
Av.startTime = t;
Av.endTime = t; %this will be incremen... |
ea242cd2aed106c994b003c7edec6b8a00ac5a366fa9d4f25dd931dd3e8296f8 | MATLAB | 575 | 14 | function [similarity indSim] = SSSimBoxFill(a, b, blobStruct)
% Calculate similarity for a single edge.
% a is blob a.
% b is blob b.
% blobStruct is the list of blobStruct
newArea = (max(blobStruct.boxes(a,3), blobStruct.boxes(b,3)) - ...
min(blobStruct.boxes(a,1), blobStruct.boxes(b,1)) + 1) .* ...
... |
0700d20c3fe9e80cedd7ca7d639a67c7438ac4d7712266e1730ac308346dc830 | MATLAB | 576 | 25 | function chi = delta2chi_tso(delta, D, thresh)
% chi = delta2chi_tso(delta, D, thresh)
%
%% Author: Xu Li
% Affiliation: Radiology @ JHU
% Email address: xuli@mri.jhu.edu
% QSM TKD method
warning off all
%% threshold based susceptibility mapping (TSO or TKD)
delta_k = fftshift(fftn(delta));
IndIll = abs(D) < thresh... |
0f01bd16362a9f985b345f74bc919230447ca5cc426a5598a4639f9b85c78269 | MATLAB | 576 | 18 | function y = vl_gaussian(x)
% VL_GAUSSIAN Standard Gaussian density function
% Y=VL_GAUSSIAN(X) computes the standard (zero mean, unit variance)
% Gaussian density.
%
% To obtain the Gaussian density of standard deviation S do
%
% Y = 1/S * VL_GAUSSIAN(X/S).
%
% See also: VL_DGAUSSIAN(), VL_DDGAUSSIAN(), V... |
4d4f934a47513950c5fbea18a46286262589f2e2a7ae45073790b329e332353b | MATLAB | 576 | 11 | function nd_sampled_stimulus = centerline_sampled_stimulus_to_nd_sampled_stimulus(centerline_sampled_stimulus, nd)
%nd is the number of "zones" to resample to
n_centerline_pts = size(centerline_sampled_stimulus,2);
spacings = linspace(1, n_centerline_pts+1, nd+1);
nd_sampled_stimulus = zeros(size(center... |
8ab681567ff5e329dddc10c7e769e46fada448d4e14eb55242bb5da16461a8df | MATLAB | 576 | 23 | function mask_bold = BoldIsolate(mask,params)
%BoldIsolate 太い主要血管のみをmaskから取り出した画像を返す。
erodePx = params(1);
dilatePx = params(2);
N = size(mask,3);
mask_bold = zeros(size(mask));
for i = 1:N
A = squeeze(mask(:,:,i));
B = imerode(A,strel('disk',erodePx));
C = imdilate(B,strel('disk',dilatePx));
... |
b7068fcaadd5b0dd973c5a69bd102ba4f4c52ed77df58b4470f3d9b1402d4998 | MATLAB | 576 | 17 | function filename = getfilename(tree)
% XMLTREE/GETFILENAME Get filename method
% FORMAT filename = getfilename(tree)
%
% tree - XMLTree object
% filename - XML filename
%__________________________________________________________________________
%
% Return the filename of the XML tree if loaded from disk and an em... |
2445e2aac6aa1836d51c702a5800e745808bc8ea347b1f53e5d9ca4b41a62f72 | MATLAB | 577 | 18 | function SONSetADCOffset(fh, chan, offset)
% SONSETADCOFFSET sets the offset on an ADC channel
%
% SONADCOFFSET(FH, CHAN, OFFSET)
% where FH is the SON file handle, CHAN is the channel number and OFFSET is
% the new value to be written to the file
%
% An ADC value is converted to a real value as:
% Real value=... |
380ebe499251884556491da71fe56f58f8912c0c97f9d8d656c8ce3a8ade56a3 | MATLAB | 577 | 26 | clear all
clc
[data_name] = uigetdir(pwd,'Select the PeakTrain_Joint folder');
cd(data_name);
p = dir;
cd(p(3).name);
pp = dir;
load(pp(3).name);
fs=10000;
acq_time=length(peak_train)/fs/60; %minutes
cd ../..
[path_name] = uigetdir(pwd,'Select the NetworkBurstDetectionFiles folder');
cd(path_name);
d = dir;
... |
6127d7f45e5c8a51cd2ddcc99ca5904b67a249cd6fb6ad322e3ecb5992de10ba | MATLAB | 577 | 18 | % mglPoints3.m
%
% $Id$
% usage: mglPoints3()
% by: justin gardner & Jonas Larsson
% date: 04/03/06
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: plot 2D points on an OpenGL screen opened with mglOpen
% usage: mglPoints2(x,y,z,size,color)
% ... |
00ed8185c40b7838826ac0191546e91632af88f6e5714d7be7860fbf4e732419 | MATLAB | 578 | 31 |
function imdb=my_gen_imdb(train_opts, ds_info)
task_info_train=[];
task_info_train.data_type='train';
task_info_train.task_idxes=ds_info.train_idxes;
task_info_val=[];
task_info_val.data_type='val';
task_info_val.task_idxes=ds_info.test_idxes;
imdb=[];
imdb.ds_info=ds_info;
imdb.task_info_train=task_info_train;... |
25c2fe1997647c9db007493ac9d7e90f5d2448ebab11327869cb943fc90da16e | MATLAB | 578 | 11 | figure(1); clf;
subplot(121); [hh, ax] = pareto(codingBlue,VarNames); set(ax(2),'visible','off');
set(hh(1),'facecolor','b');
set(ax(1),'view',[90 90],'ylim',[0 max(get(hh(1),'ydata'))],'ytickmode','auto');
subplot(122); [hh, ax] = pareto(codingRed,VarNames); set(ax(2),'visible','off');
... |
ef7b07afdf76193b26fa8701d9efe298c3f01ae3844b196d03ff2ca5f2200072 | MATLAB | 578 | 19 | function retval=is_filename_absolute(filename)
% If you do x=fileparts(x) until you reach steady-state,
% the steady-state x will be empty if and only if the initial x is relative.
% If absolute, the steady-state x will be "/" on Unix-like OSes, and
% something like "C:\" on Windows.
%
% Note t... |
921542db84e23623f2a7de92fbc7457173c1803a072df282737c7fd8ce5b3edc | MATLAB | 580 | 25 | function ml_util_draw_correlation_matrix_patches(M)
colour = [1,1,1];
m = size(M,1);
n = size(M,2);
x = 1:n;
y = 1:m;
edgesX = x - 0.5;
edgesX(end+1) = edgesX(end) + 1;
edgesY = y - 0.5;
edgesY(end+1) = edgesY(end) + 1;
hold on
[px, py] = meshgrid(edgesX, edgesY);
f... |
45262939943c07757b9eed19498292afdf3ebb734876092e4a206517c6bed3a7 | MATLAB | 581 | 22 | function ShowRectsWithinImage(rects, numRow, numCol, image, imageNames)
% ShowRects(Rects, numRow, numCol, image)
%
% Shows only the rectangles of the image
if ~exist('imageNames', 'var')
imageNames = cell(size(rects,1), 1);
for i=1:size(rects,1)
imageNames{i} = sprintf('%d', i);
end
end
... |
6f1232a0d4ae4e9440a025f954e8c70baec75464e207038e5d7d6512e45459eb | MATLAB | 581 | 26 | function results = vl_test_ihashsum(varargin)
% VL_TEST_IHASHSUM
vl_test_init ;
function s = setup()
rand('state',0) ;
s.data = uint8(round(16*rand(2,100))) ;
sel = find(all(s.data==0)) ;
s.data(1,sel)=1 ;
function test_hash(s)
D = size(s.data,1) ;
K = 5 ;
h = zeros(1,K,'uint32') ;
id = zeros(D,K,'uint8');
next = zer... |
04a656df1b3dab321b900002f319df3fac81e4bc5a4f87a84bcaa5f60fa9c695 | MATLAB | 582 | 19 | f1 = [0.38,0.55,0.63,0.69,0.68,0.71,0.79,0.79,0.79,0.82, 0.78, 0.78];
kappa = [0.01,0.22,0.37,0.45,0.44,0.51,0.64,0.62,0.63,0.67,0.61,0.62];
time = [1,2,3,4,5,6,7,8,9,10,15,20];
clf;
axesH = axes;
yyaxis left;
plot(time, f1, 'LineWidth', 2);
ylabel('Weighted-F1 score', 'FontWeight', 'bold') ;
xlabel('Epoch len... |
0d05866556ce408b89d0649aa034562edde9e18b01aac3b9cbce58583f207ae8 | MATLAB | 582 | 20 | function SONSetInitLow(fh, chan, flag)
% SONSETINITLOW sets the initial state on an EventBoth (level) channel
%
% SONSETINITLOW(FH, CHAN, FLAG)
% where FH is the SON file handle and CHAN is the channel number.
% FLAG is 'TRUE' if the first transition is high-to-low, 'FALSE' otherwise.
% No return value
%
% Au... |
2076193a7d5345d8c10f6b60ea21833955fa0b6323a0a04e0b0152e9a14575a5 | MATLAB | 582 | 18 | function [ new_labels ] = combine_watersheds( L, indecies_to_combine )
%This function combines the indecies in indecies_to_combine
if length(indecies_to_combine) < 2
new_labels = L;
return
end
BW = im2bw(L, 0);
BW_combined_indecies = ismember(L, indecies_to_combine);
BW_combined_inde... |
3075169d02aea7d4a7cf9568f5cc2f34da54d0dac196243b3f35760a3e5a4d55 | MATLAB | 582 | 21 | function [ data ] = ml_cai_behavtrackvid_h5_read_all( filename )
% Reads a 'behav_track_vid.hdf5' file specified by the filename given in filename
info = h5info(filename);
h5Fields = {info.Datasets.Name};
matFields = h5Fields;
numFields = length(h5Fields);
data = [];
for iF = 1:numFields
fieldName = sprintf('/%s',... |
31f7b9e19e5959d65cd5e43b50a27347697354e32848e2cd59e51f732278de0e | MATLAB | 582 | 15 | function flip = spm_flip_analyze_images
% Do Analyze format images need to be left-right flipped? The default
% behaviour is to have the indices of the voxels stored as left-handed and
% interpret the mm coordinates within a right-handed coordinate system.
%
% Note: the behaviour used to be set in spm_defaults.m, but t... |
2dd95607357268c6ce5f3068e8ed1a7a86165e2b38ea63b55ccca96748c09da9 | MATLAB | 583 | 21 | function [timeRange, pupilSize] = getPupilSize(obj, startIdx, endIdx)
assert(isa(obj, 'Edf2Mat'), 'Edf2Mat:plot', ...
'Only objects of type Edf2Mat can be plotted!');
if ~exist('startIdx', 'var')
startIdx = 1;
end
if ~exist('endIdx', 'var')
endIdx = numel(obj.Samples.p... |
62ca92e316989b9d8e3a02cf6ad15f573b9da9ec5323e8e37225559df44714db | MATLAB | 584 | 22 | % testradiipupil
% Test pupil radius parameters for initial search
function [pupilStart1,pupilStart2] = testradiipupilmanual(img1, img2)
% Camera 1
clf; subplot(1,2,1); imagesc(img1); colormap(gray); axis image;box off
% Camera 2
subplot(1,2,2); imagesc(img2); colormap(gray); axis image;box off
%% Get pupil cen... |
62f37946538ed580525706ac459806f31a9d523b009719a3e8585e8c80fd1124 | MATLAB | 584 | 29 | function fixticks(scale)
% FIXTICKS(scale)
% Put tick marks outside figure, sizes them according to full figure
if ~exist('scale','var')
scale = 1;
end
npoints = 2;
h = findall(gcf,'Type','axes');
% Get length of current axes
% pos = get(h(1),'Position');
% Based only on maximum VISIBLE axis, use special fun... |
8c97eb84cc7aedab31147b38d15d243b2b0eb2403b8145c26684506fa721ed6e | MATLAB | 584 | 15 | function SONSetFileClock(fh, usPerTime, timePerADC)
% SONSETFILECLOCK sets the basic time units and the clocks per ADC conversion
%
% SONSETFILECLOCK(FH, USPERTIME, TIMEPERADC)
% INPUTS: FH the SON file handle
% USPERTIME the number of microseconds per clock tick
% TIMEPERADC the number of clock ... |
eeee98d241722e182fc20768d6d8adacbbcb8a5ef8cce1a9816b571366c32d42 | MATLAB | 584 | 21 | % f_GetIdxPosition.m [As a part of HFO Detection Project]
% Written by:
% Miguel G. Navarrete Mejia
% Electrical Engineering MS candidate
% UNIVERSIDAD DE LOS ANDES
% Colombia, 2012
% mnavarretem@gmail.com
function pst_Pos = f_GetIdxPosition(pst_Pos,pst_Data)
pst_Pos.s_IdxIni = f_GetIdx(pst_Pos.s_... |
1d1b0bfb34a78baa6ac9d61dd403e8142f7066188b6c390f5a1aacfbdb24ae7d | MATLAB | 585 | 26 | function [imagesCellTrain, imageSize] = adjustFormat(imagesCellTrain)
%compute image size
%image size must be a power of 2
im = imagesCellTrain{1};
closPow2 = pow2(floor(log2(size(im,1))));
imageSize = [closPow2 closPow2];
for i = 1 : numel(imagesCellTrain)
%load
im = imagesCellTrain{i};
%back t... |
a3de7ef3fc88ddbc91d48f789addfd9e59f6d561a5b02e875f60cdf7a4df3640 | MATLAB | 585 | 24 | function deviceNumber = getBoxNumber
% Checks connected USB devices and returns the device number corresponding
% to the scanner button box (buttonBoxID should be set the the productID of
% the button box used locally).
% Written by KGS Lab
% Edited by AS 8/2014
% change to productID number of local button box
buttonB... |
cc19f179b9a534e7c38c73c361abafcb87cfa5e27a6628b5a49e8c61d21b9c73 | MATLAB | 585 | 21 | frame_id = round(rand(1,100)*v.NumFrames);
frame_id = frame_id(frame_id>0);
% im_rep = [];
v.CurrentTime = 0;
im_rep = [];
disp('Generating Background Model...')
for i = 1:length(frame_id)
% frame_id = round(rand(1,1)*vid.Duration);
get_im = rgb2gray(read(v,frame_id(i)));
% get_im = im2gray(readFrame(vid));... |
f808f262721278d18d5f4fa6bd830c28553c4011e23185b66674410f8f140d0c | MATLAB | 585 | 25 | function [finalmask] = cjlabel( maskin,groups )
finalmask = zeros([size(maskin) groups]);
for groupnum = 1:groups
bmask = zeros([size(maskin)]);
for ii =1:size(maskin,3)
L = bwlabel( maskin(:,:,ii) );
if L == 0
bmask(:,:,ii) = maskin(:,:,ii);
else
[counts, bins... |
0a8dcd3df1dd4277825f2f23496ba099756a4c31d01c65013b4e63bae5c6c163 | MATLAB | 586 | 16 | function dss_message(state, level, message)
% Logging based on verbosity level
% dss_message(state, level, message)
% state DSS state with verbose-parameter
% level Used logging level
% message Logged message
% Copyright (C) 2004, 2005 DSS MATLAB package team (dss@cis.hut.fi).
% Distributed by Lab... |
fffa90cc4aa6e7cd42890c9608cae754752b1c5810fa8f71c59d5dda23884daf | MATLAB | 586 | 21 | function [probe] = toggleModules(probe, moduleidx, modulestate)
%TOGGLEMODULES Toggle the active state of a module
% Toggles the active state of modules. moduleidx can be either an
% integer, or an array of module indeces. modulestate must be 'on' or
% 'off'. This changes the fourth column of probe.modules.
if (... |
b8bd8524ee5453c65b3434ddf252d9ef77014d94f707693ce0accb6232b84e99 | MATLAB | 587 | 26 | function [Y] = NotchFilter(X,Fs,Fa)
% This function is Notch filter function.
%
% Input£º
% X Raw EEG Data, the data format is [Nchans * Ntime], where Nchans
% is number of channels (EEG electrodes) and the Ntime is the number of EEG samples
% Fs the sampling frequency (in Hz)
% Fa Notch ta... |
649022ad9331b9e9c096796e20e09492b96ef1a0dd0411902b4973e144586e7b | MATLAB | 588 | 22 | function sTracks = storeTracks(tracks,sTracks,counter)
if counter == 1
% create an empty array of tracks
sTracks = struct(...
'id', {}, ...
'data',{},...
'trackedFrames', 1);
end
ids = 1:size(vertcat(tracks.id),1)
for i = 1:length(ids)
IDpos = ids(i);
sTrack... |
9db6e8d5a4304fdd869c131999ba2902be7906a26e4e9e2011dc377bfb76708c | MATLAB | 588 | 18 | function y = vl_dgaussian(x)
% VL_DGAUSSIAN Derivative of the Gaussian density function
% Y=VL_DGAUSSIAN(X) evaluates the derivative of the standard Gaussian
% density.
%
% To obtain the Gaussian density of standard deviation S, do
%
% Y = 1/S^2 * VL_DGAUSSIAN(X/S) .
%
% See also: VL_GAUSSIAN(), VL_DDGAUSS... |
1659f22ede87917a44a825ef315acfea37991754d5a934a71bc00df93ac35a0b | MATLAB | 589 | 18 | function [ql,qu]=idealf(x)
% Compute the ideal fourths for data in x
% The estimate of the interquartile range is:
% IQR=qu-ql;
% Adapted from Rand Wilcox's idealf R function, described in
% Rand Wilcox, Introduction to Robust Estimation & Hypothesis Testing, 3rd
% edition, Academic Press, Elsevier, 2012
% Cyril Perne... |
55bf3f554a3e1c5d06d7588f2c7324e9889971102f9fb816e94282168d8f4f8d | MATLAB | 589 | 14 | function [similarity indSim] = SSSimBoxFillOrig(a, b, blobStruct)
% Calculate similarity for a single edge.
% a is blob a.
% b is blob b.
% blobStruct is the list of blobStruct
newArea = (max(blobStruct.boxes(a,3), blobStruct.boxes(b,3)) - ...
min(blobStruct.boxes(a,1), blobStruct.boxes(b,1)) + 1) .* ...
... |
bcc857f6793cfb8ddec9a01702370280f6c3461440e98c7524196879511b5900 | MATLAB | 589 | 18 | function [results] = ml_dir_regexp_files(containerFolder, str, searchAllSubFolders)
if searchAllSubFolders == 1
files = dir(fullfile(containerFolder, '**'));
else
files = dir(fullfile(containerFolder, '*'));
end
keep = zeros(1, length(files));
for i = 1:length(files)
if regex... |
46d61299675bf88ff68ab60e3954891ff8808dc16742463b9e760486c9c5f24b | MATLAB | 590 | 38 | %
% Draw a full graph (with edges) using decomposition data.
%
% PARAMETERS
% x, y (n*1) Coordinates
% T (e*2) Edges
% dense 0/1 dense plot
%
function map_line(x, y, T, dense)
if dense
line_width = 0.1;
else
line_width = 1;
end
colors_letter = konect_colors_letter();
if dense
style = '-';
else
... |
99bd2bab315d6be2343308a017eaddaff53004fa292f1b8962b003412982fb27 | MATLAB | 591 | 15 | %VL_THREADS Control VLFeat computational threads
% [NUM,MAXNUM] = VL_THREADS() returns the current number of
% computational threads NUM and the maximum possible number MAXNUM.
%
% VL_THREADS(NUM) sets the current number of threads to the
% specified value. NUM = VL_THREADS(NUM) does the same, but returns
% ... |
04a5c907199ef1eed4e2fd82a3a656f0f6f813dc4d2cb17f608a039aa6754e96 | MATLAB | 592 | 24 | % mergeStructs.m
%
% Function to merge two structs into one struct with fields from both
% structs.
% NOTE: only works if the two structs don't share fields with the same name
%
% INPUTS:
% struct1 - struct 1 to merge
% struct2 - struct 2 to merge
%
% OUTPUTS:
% mergedStruct - single struct with fields from both... |
2378d213e94d0a84f62fa564704db44807594aa2acf7cd06d3aa9ebf130dd6be | MATLAB | 592 | 19 | function SONSetADCScale(fh, chan, scale)
% SONSETADCSCALE sets the scale on an ADC channel
%
% SONADCOFFSET(FH, CHAN, SCALE)
% where FH is the SON file handle, CHAN is the channel number and SCALE is
% the new value to be written to the file
%
% An ADC value is converted to a real value as:
% Real valu... |
77bd83e89f09e9986eac95a6f88abfdbd40c4087c47ad6a7dbaf00932d96a810 | MATLAB | 592 | 19 | function dTickLen=SONTimeBase(fh, dTb)
% SONTIMEBASE Get or set the base time units for the file
% (usually 1e-6seconds)
% DTICKLEN=SONTIMEBASE(FH, DTB)
% FH SON file handle
% DTB If <= 0 ignored
% >0 the new value to s... |
ca1d762915cca7ed2d1d8751d4aeecd2ed1cc04e5fcf99fded613a9d93588e35 | MATLAB | 592 | 27 | function res = adjD(y)
%y1 = ones(imsize)*y(1)/sqrt(prod(imsize));
%yx = (reshape(y(2:prod(imsize)+1), imsize(1), imsize(2)));
%yy = (reshape(y(prod(imsize)+2:end), imsize(1), imsize(2)));
res = adjDx(y(:,:,:,1)) + adjDy(y(:,:,:,2)) + adjDz(y(:,:,:,3));
return;
function res = adjDz(x)
res = x(:,:,[1,1:end-1]) - x;... |
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