sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
509da20783a32d26e3b350a2a3b7e50a63d48120d2c0e8b95ff1db129e790a20 | MATLAB | 958 | 51 | function M1 = vox2ras_0to1(M0)
% M1 = vox2ras_0to1(M0)
%
% Converts a 0-based vox2ras matrix to 1-based, ie,
% Pxyz = M0*[c r s 1]' = M1*[(c+1) (r+1) (s+1) 1]'
%
%
% vox2ras_0to1.m
%
% Original Author: Doug Greve
% CVS Revision Info:
% $Author: nicks $
% $Date: 2007/01/10 22:55:10 $
% $Revision: 8776 $
%
% C... |
8cec7b95e8c7ad646f543dae967146d1fcf527252673da08d495432e79dd6ba0 | MATLAB | 958 | 34 | %% Author: Jiri van Bergen and Xu Li
% Affiliation: Radiology @ JHU - Kirby Center
% Contact via xuli@mri.jhu.edu
% Open file
[FileName,PathName,FilterIndex] = uigetfile(handles.Params.fileTypes, 'Select files (PAR/REC, DICOM, NIFTI)');
% Something?
if(FileName ~= 0)
% Get data
tableData = get(han... |
8cff45641281fc48366d38c5cf525f0dde682f6cca1afd45aed7b155810ac1ec | MATLAB | 958 | 28 | function stdout = system_from_list_with_error_handling(command_line_as_list)
% Run the system command, but taking a list of tokens rather than a string.
% Each element of command_line_as_list is escaped for bash, then composed into a
% single string, then submitted to system_with_error_handling().
... |
f2f7c8b96ae1f8b7b5cfc324a8b7903af519a374783f5d49a89a5bed170c7b9b | MATLAB | 958 | 34 | function [h] = mlgp_plot_cumulative_similarity(obj, session)
tmp = load( fullfile(session.getAnalysisDirectory(), 'best_fit_orientations', 'bfo_180_percell.mat') );
perCell = tmp.perCell;
t = {'all', 'same' , 'different', 'context1', 'context2'};
h = figure;
for it = 1:length(t)
X = [perC... |
39b87b58cdf0644ef797b51d948b1ff7199c352fedf8852eee7dcb9b31fc68b4 | MATLAB | 959 | 23 | function [params, beta] = beta_global(params, state, denf)
% Beta function for global spectral shift based on gaussian noise.
% [s_new, params] = beta_global(params, state, s)
% params Function specific modifiable parameters
% state DSS algorithm state
% denf Denoising function
% beta Global ... |
9f4f6a69abc85584a22df57789c506d6e6de18a0225bb0a2d7e2a200322cf6f5 | MATLAB | 959 | 34 | function tifwriteblock(imData,imFilename,imHeader,dataType,blocksize)
if length(size(imData)) ~= 3
error('image is not 2D or 3D')
end
if nargin<5 || isempty(blocksize)
blocksize = 1000;
end
if nargin<4 || isempty(dataType)
dataType = class(imData);
else
imData = eval([dataType '(imData)']);
end
if nargin... |
b5b7a6ee1a4718378fe8c131e836cb5eaed30896713eaac02557894667e1988e | MATLAB | 961 | 31 | function format_string = format_generator(skip_keep_vector)
% This function assumes 1 = remove or skip and 0 = keep. It also assumes
% the pre-skip frame and 2 post-skip frames are already in the
% skip_keep_vector.
if isstr(skip_keep_vector)
disp('You are silly, because you put a string, when I want a vector')
... |
be94c3eb4c5d97e011797f93dc7f05e572ffb990f56f769e08d44ed4ef5689c6 | MATLAB | 961 | 47 |
function my_save_file(cache_file, data_obj, force_overide, be_quite)
if nargin<3
force_overide=false;
end
if nargin<4
be_quite=false;
end
finished=false;
while ~finished
try
if ~force_overide && exist(cache_file, 'file')
disp('file exist, save to new name.');
... |
d21093b253118144f20033e9434ae00df8277448cac266d58f602351e77f08a7 | MATLAB | 961 | 29 | function ml_mclust_convert_clusters_to_muzzis(mclustClusterFilename, muzzioClusterFilename)
% Basically a direct copy from a .clusters file to a new .muzzis file.
% We can't just use copyfile because the structures were renamed.
% Load the MClust '.clusters' file
data = load(mclustClusterFilename, '... |
ef441198e7c4451dbaa894a0ced7514361881ffdecf1bb93891ed0a1d42b2c97 | MATLAB | 961 | 40 | function[]= check_shift(redcell_vect,cell_stat,img,shift,img_brightness)
% Function that plots masks over both the mean functional image and the
% mean from the wavelength stack to make sure that the registration
%% MAKE VARIABLES
xshift=shift(1);
yshift=shift(2);
red_idx=1:length(cell_stat);
red_idx=red_idx(re... |
06b64302f13fcc1e8b198a3d49542b00d1832bdf03188be37324e7c7c5353c03 | MATLAB | 962 | 35 | function artinis_license
% ARTINIS_LICENSE prints the license only once upon the first call to
% this function. If the user does a "clear all", the license will
% again be shown. This function should be included in every artinis
% function to ensure that the license is displayed at least once.
% Copyright (C) 2009-2... |
1cc51369f289f96441d03ad9448904d12f62bf654a464450412d3e4a7e338965 | MATLAB | 963 | 21 | function [thinned_image_outline, thin_iteration] = find_possible_centerline_image(BW, best_thinning_iteration)
%find the centerline image by removing best_thinning_iteration pixels
%from the outside of the BW image and finding the outline
%remove spurs
spurless_BW = bwmorph(bwmorph(BW, 'close'), 'spur... |
5e664c52e117dcbaf725d3475820b23ee76d572a35e650e6301343c7a9268bf6 | MATLAB | 963 | 31 | function [ ] = bemf1_graphics_coil_CAD_3color(coil, flag)
Gc = [0.11 0.93 0.1];
Rc = [1 0 0];
Bc = [0.01 0.01 0.98];
if flag == 1 % x coil
Pfull = coil.P;
p = patch('vertices', coil.PX, 'faces', coil.tX);
p.FaceColor = Rc; % [0.72 0.45 0.2];
p.EdgeColor = ... |
70ee04a24d4d04648ce3e84e84826c385212c07cb19ed5603a028d5239c14ca2 | MATLAB | 963 | 32 | %
% Please cite this paper if you use any component of this software:
% S. Soltanian-Zadeh, K. Sahingur, S. Blau, Y. Gong, and S. Farsiu, "Fast
% and robust active neuron segmentation in two-photon calcium imaging using
% spatio-temporal deep learning," Proceedings of the National Academy of Sciences (PNAS), 2019.
%
... |
f1263ef0eb3c9932bed68ca9064ff7f50b5cd6fd0e6c9a99eff14623f64426a3 | MATLAB | 963 | 22 | function n_ch = powerlaw_range(xx)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% If you use this code, then please cite:
% 1.- Ana P. Millan, et al. "Individualized epidemic spreading models
% predict epilepsy surgery outcomes: a pseudo-prospective study."
% medRxiv (2023): 2023-03. doi: https... |
347591cac9a4065dbbcf358282c64b5fb5d06116d68e871057e052703f7c7cf0 | MATLAB | 964 | 36 | function [centerOutAngle] = centerOutRadians(map)
% from -180 to 180;
boxSize = size(map);
centerXY = [boxSize(2)/2, boxSize(1)/2];
% calculate center of mass
M = map;
k = prctile(M, 95, 'all');
if isnan(k)
centerOutAngle = nan;
return;
end
bw = zeros(size(M));
bw(M>=k) = M(M>=k);
labeledImage = bwlabel(bw);... |
51d7d62158e161c92969dc75c21a48c6f093104baf2057b8c06bd32f27d0cc78 | MATLAB | 965 | 28 | function [params, result] = ortho_default(params, W, w)
% Default DSS orthogonalization function
% W = orthof(W) for symmetric dss
% w = orthof(W, w) for deflation dss
% W Matrix with projection vectors as rows. For deflation
% algorithm only previously calculated projections are given.
% w Curre... |
6f72a12faa0581702421e7196071faa84573b5e1685f3b83d919862cb728339a | MATLAB | 965 | 30 | function [exportedFilename] = ml_limelight_export_video(limelightFilename, frameRate_hz)
%frameRate_hz = 15;
[filepath, name, ext] = fileparts(limelightFilename);
if ~strcmp(ext, '.llii')
error('Can only read FreezeFrame video that end in ".llii".\n');
end
if ~isfile(limelightFilename)... |
e1b99c92039013b016afd18a3f48042c9a3322b3c5590356e58cef691ad617c0 | MATLAB | 965 | 13 | function LHS = bemf4_surface_field_lhs(c, Center, Area, contrast, normals, weight, EC)
% Computes the left hand side of the charge equation for surface charges
%
% Copyright SNM 2017-2020
toc
% LHS is the user-defined function of c equal to c - Z_times_c which is
% exactly the left-hand side of t... |
68d561ca0adf5dda3eb957b2c8380ecf85a317f5c98d984c1d2aee0764b1093f | MATLAB | 966 | 23 | % SONFMODE creates a filter mask structure and/or
% sets the mode for marker filtering
%
% Implemented though SONFMode.dll
%
% FILTERMASK=SONFMODE(MODE)
% FILTERMASK=SONFMODE(FILTERMASK, MODE)
%
% INPUTS: FILTERMASK, if present, is a filter mask structure that will be
% copied to the output
%... |
d5abd0f5ffd1eaab8afae222fa415d3f4b7871ea45b91781a2c71ae9d66bfc39 | MATLAB | 966 | 28 | function PruneRecording(recordingParams)
if ~exist(recordingParams.outputDirectory,'dir')
mkdir(recordingParams.outputDirectory);
end
stable_time = recordingParams.stable_time;
stable_channels = recordingParams.channels+1;
if recordingParams.hasTriggerChannel
num_of_raw_channels = 385;
else
num_of_raw_ch... |
04c9ea4510d9347f53a0cf4836866a2ff1b46627fcdbff7ad1b4ec7c25cf202b | MATLAB | 967 | 34 | function [ data_cost, reg_cost ] = compute_costs( chi, phase, kernel )
% Calculates the costs associated with a TV regularization
% Useful to build a L-curve plot
%%
% Parameters:
% chi: calculated susceptibility map
% phase: acquired phase or local phase map.
% kernel: dipole kernel in the frequency space
%
% Output:
... |
07bf055d4d835d4cd99a9b087edb390824674f443405591e5a4c1b1cb40f82b8 | MATLAB | 967 | 30 | % Simplified FIM for GBM
% Original Source: Marisa Eisenberg (marisae@umich.edu)
function FIM = GBMMiniFisher(tspan,fixed,params,indexchooseparam,initialcondition,variablenum)
delta = 0.001; %percent change we'll use, default 0.1%
X = [];
for j=1:length(params)
params1 = params;
params2 = params;
params... |
61b9955c70c41050d7c2bd8720cddf5874f828880417e7a3b05da2a9bf950a30 | MATLAB | 968 | 27 | [filename, path] = uigetfile({'*'}, 'MultiSelect','on','Çë¶ÁÈ¡tdmsÎļþ');
if ischar(filename)
file_num=1;
full_file_path=fullfile(path,filename);
[~,~,file_part]=fileparts(full_file_path);
if strcmp(file_part,'.tdms')
reading = TDMS_readTDMSFile(full_file_path);
data=cat(1,reading.data{3... |
7878d7f714be6401d5051021a780b5c63c945bf73fd66b8ff191014b75f5f0fe | MATLAB | 968 | 27 | function[out,hout]=SONRealToADC(in,header)
% SONREALTOADC Converts floating point array to int16
% and returns a header with updated scale and offset
%
% Example:
% [OUT,HOUT]=SONREALTOADC(IN, HIN)
% The input data are scaled to fill the maximum range of the int16
% output array. Scale and offset in HOUT are updated in... |
4e214ab6b9d97b1b88fcbdc445662428b061c9be230212da84afff46f666554a | MATLAB | 969 | 52 | %
% Test which distributions fit the hop distribution.
%
% PARAMETERS
% $network
%
% INPUT
% dat/info.$network
% dat/hopdistr.$network
%
% OUTPUT
% dat/hopdistr_distrtest.$network.mat
% .data.[distr-name]
% the data of the fit as returned by
% distrtest_plot()
%
network = getenv('network');
consts = konect_cons... |
168c357237806bda1b1c6b8268bd3166f83f5dffa9ef451e21920e87070cecf0 | MATLAB | 970 | 38 | function [p,dp,negCinv,logdetrm] = logprior_ridge(prvec,rho,iirdge,rhoNull)
% [p,dp,negCinv,logdetrm] = logprior_ridge(prvec,rho,iirdge,rhoNull)
%
% Evaluate a Gaussian log-prior at parameter vector prvec.
%
% Inputs:
% prvec [n x 1] - parameter vector (last element can be DC)
% rho [1 x 1] - ridge parameter (pre... |
4fec1757c8d6c5acbd3a6a6ee6028fb18903bc449c893c56eaa8344a8faa4a4b | MATLAB | 970 | 27 | function [params, s_new] = denoise_fica_skew(params, s, state)
% FastICA skew nonlinearity as DSS denoising function
% [params, s_new] = denoise_fica_skew(params, s, state)
% params Function specific modifiable parameters
% state DSS algorithm state
% s Source signal estimate, matrix of row vecto... |
d3e588423cce840aa55e3f4aa87f5382db912dcf6c9a7a44cfc60094869237b3 | MATLAB | 972 | 24 | function subsample_coord = SubSampleTrack(coord, time, fps, interpolate)
% not used in paper
subsample_coord = zeros(floor(max(time)*fps),2);
time_index = 2;
for i = 1:length(subsample_coord)
curr_time = i / fps;
while time(time_index) < curr_time
time_index = time_index + 1;
... |
4e8a61fd3f3e6832be662fd0744850d18e272e113aab039fbb6a713344fb9d17 | MATLAB | 973 | 30 | % mglSocketClose: Close a socket.
%
% $Id$
% usage: s = mglSocketClose(s)
% by: justin gardner and ben heasly
% date: 12/26/2019
% copyright: (c) 2021 Justin Gardner (GPL see mgl/COPYING)
% purpose: Close a local/unix socket.
% usage: s = mglSocketClose(s)
% s -- a socket ... |
4fdca5ebfcfe7b203869dc8135e6ee1d451f4603f394d7d63cd89b8a5c9a8cc5 | MATLAB | 973 | 37 | % mglMoveWindow.m
%
% $Id$
% usage: mglMoveWindow(leftPos,topPos)
% by: Christopher Broussard
% date: 10/23/07
% purpose: Moves the current AGL window with the left edge of the window
% at 'leftPos', the top edge at 'topPos'.
%
%mglOpen(0);
%mglMoveWindow(100,100);
function mglMoveWin... |
3639276ca9c92b54f9a797fba7d71d4e6d1b232cb9c081b54c46233416c9e2bb | MATLAB | 974 | 27 |
% Determine whether detections are atomic based on
% a) body is large enough to belong to a single fly, or
% b) body is the only (or largest) component within foreground.
%
function is_atomic = is_atomic_detection(det,params)
n_obj = det.body_cc.NumObjects;
is_atomic = zeros([n_obj 1]);
mean_body_area = param... |
68bbd30a6a3e5a610ae6f46db5700e5d6580d941333906ba143700e200e84aee | MATLAB | 974 | 43 | %wrap - Set radian angles in range [0,2pi] or [-pi,pi].
%
% USAGE
%
% y = wrap(x,range)
%
% x angles in radians
% range optional: 1 for [-pi,pi] (default)
% 2 for [0,2pi]
%
% SEE ALSO
%
% See also isradians.
%
% Copyright (C) 2010-2011 by Michaël Zugaro... |
240e9460410cb05f7aa42a391443757f4fd2879071525145e26b0818b49513f6 | MATLAB | 975 | 25 | function frame = msReadFrame(ms,frameNum,columnCorrect, align, dFF)
%UNTITLED Summary of this function goes here
% Detailed explanation goes here
vidNum = ms.vidNum(frameNum);
vidFrameNum = ms.frameNum(frameNum);
frame = double(ms.vidObj{vidNum}.read(vidFrameNum));
if (columnCorrect)
... |
4be62b71c81f278a02c4be41f0c7b62d361284439e85d10d7865ed4402ab2e46 | MATLAB | 975 | 30 | % get1stHalfStepPhase.m
%
% Helper function for getLegPhaseFromSteps() that takes in step start max
% position and step mid min position to convert a vector of leg positions
% between the two to leg phases between 0 and 180 degrees, with a linear
% mapping.
% For a linear mapping: phase = 180(pos - startPos)/(midPos... |
7394ebd4bc79088cff013d8e061a058b05ea1ffbb31f2c26515ced808485070a | MATLAB | 975 | 66 | %
% Plot the rating evolution, i.e. the mean rating of each item in
% function of number of ratings.
%
% PARAMETERS
% $network
%
% INPUT FILES
% dat/data.$network.mat
%
% OUTPUT FILES
% plot/rating_evolution.[ab].$network.eps
%
network = getenv('network');
data = load(sprintf('dat/data.%s.mat', network));
ids = u... |
ec1fbd2a48526855bdb90ef58bdb6ee9da45d80e226446c658a409fb9ee6149d | MATLAB | 976 | 44 | function varargout = myparse(params,varargin)
nin = length(varargin)/2;
nout = nargout;
if mod(2*nin,2)~=0 || mod(length(params),2)~=0,
error('Odd number of parameters expected');
end;
% set defaults
varargout = varargin(2:2:2*nout);
% parameter names
names = varargin(1:2:end);
% go through parameters
for i = 1:2... |
ec19ca76e0aec7d39e4ba6f9e59aa00b243f63952e09dd7f43b6d1d9f7b7acf0 | MATLAB | 977 | 36 | function ml_cai_neurondataset_plot_sfp(neuronDataset, nidToShow)
I = [];
for nid = 1:neuronDataset.num_neurons
sfp = neuronDataset.neuron(nid).spatial_footprint;
J = bwperim(sfp);
if isempty(I)
I = J;
else
I = I + J;
end
end
[sfpc, ri, ci... |
ac056c85794ee7e916afc11db6f6a066d4135385dd2068b57a8e48d6e20ef57b | MATLAB | 978 | 30 | function [alpha, logLL, scale] = fwd_nolog(seq, pi, A, b, n_state)
%% Forward algorithm
%% authors: Stefano Diomedi
%% date: 22nd February 2024
% Prepend a dummy value to the sequence
seq = [9999, seq];
n_bin = length(seq); % Determine the length of the sequence
% Initialize alpha matrix and scaling factor
alpha = z... |
b18ac32d0c6672a458d7b95cf739b1cab4205332af54739720a65a4c685f18da | MATLAB | 978 | 26 | function [ text ] = getSessionInformation( obj )
% Display information about session date.
%
% Syntax:
% GETSESSIONINFORMATION( obj );
%
% Input parameters:
% * obj - object containg data
%
% Example:
% GETSESSIONINFORMATION( );
%
% Available at: https://github.com/NCN-Lab/DBScope
% For referencing, please use: ... |
5562f6ba8a8ef37cec369c17a4b12a32b68456ae126ed664dab61069c16ad509 | MATLAB | 980 | 31 | function [task myscreen] = mglEyelinkCallbackSaveData(task, myscreen)
% mglEyelinkCallbackSaveData - Assigns eye position to myscreen
%
% Usage: mglEyelinkCallbackSaveData(IP, conntype)
% IP - the ip address of the eyelink eye tracker, defaults to 100.1.1.1
% conntype - the connection type: 0 opens a direct link, 1... |
6aac7e0b8e726c96bfe7caa996f64b8788a993a900e3eb8762bb00236491e3eb | MATLAB | 980 | 20 | function camerasdat_create( obj, session, trial )
% Create the camera dat files (TEXT)
[status, pDat] = ml_cai_daq_camerasdat_create(trial.getTrialDirectory(), 'outputFolder', trial.getAnalysisDirectory(), 'verbose', obj.isVerbose(), 'interactive', false);
if status ~= 0
error('Error encountered in ... |
e3c0459ca3756b7b58f9a40bb138235433f20962d217cdbc84318244affb4cf9 | MATLAB | 980 | 32 | % mglMirrorFlushAll: Flush the primary and any mirrored windows.
%
% $Id$
% usage: results = mglMirrorFlushAll()
% by: ben heasly
% date: 09/07/2022
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Flush the primary and any mirrored windows.
% usage... |
03962fa1d12ec3ea3a9280cfa50eb41a5aa70df1bc314d4053f1cfa9fb118400 | MATLAB | 981 | 38 | function out=cellidentify(Y1,Y2,method,p)
%out:1:yes;0:no;
%y1,y2: m*n mat,m:time,n:trial
%method:‘ranksum’;‘mean_mean';'mean_index1';'peak_index';;
%p:if method is ranksum,p is p-value;for other method,p is thesthod;
if method==1
y1=mean(Y1,1); y2=mean(Y2,1);
[t,~,stat]=ranksum(y1,y2);
if t<p && st... |
878c631d66db7427bc839292f21a9c40e7f2d379c9ffdaeed69ab50a24bccf9e | MATLAB | 981 | 37 | %
% Plot one BIDD curve.
%
% PARAMETERS
% p (e*1) Node indexes
% q (e*1) Multiplicities; [] to denote all ones
% enable_normalization Enable division with degree sum
% type
% name
% symbol
% enable_axis Same semantics as in konect_plot_power_law()
%
function bidd_one(p, q, enable_normalization, type, name, symbol, ... |
0af47103405688b20bdc711be3f1fa0fde9d48bf5b674f4ba918ded23ea2cf0a | MATLAB | 982 | 44 | function newdata=fmri_detrend(data,no_of_anchor_points)
% Performs detrending using spline interpolation on 4D volume data.
%
% newdata=fmri_detrend(data,no_of_anchor_points)
%
% inputs:
% DATA = fMRI data, vectorized or volume data
% NO_OF_ANCHOR_POINTS = Number of anchor points; Default = 6
%
% outputs:
% N... |
d9e5caf6d047e43e6a85a678dc5811299dc79facbd5f5c3eff980ed2085c4259 | MATLAB | 982 | 35 | % function f_Matrix2ZScore.m
%
function m_ZScoreMat = ...
f_Matrix2ZScore(...
pm_InMatrix, ...
ps_FirstIndRef, ...
ps_LastIndRef)
if nargin < 1
error('[f_Matrix2ZScore] - ERROR: bad number of parameters!')
end
m_ZScoreMat = pm_InMatrix;
if ~exist('ps_FirstIndRef', 'var') ... |
c1974d6db0742fc47df6cb9998913ffa215ac2578af203094d3ce5f54cd130ba | MATLAB | 983 | 38 | classdef NWBData < types.hdmf_common.Data & types.untyped.DatasetClass
% NWBDATA An abstract data type for a dataset.
methods
function obj = NWBData(varargin)
% NWBDATA Constructor for NWBData
obj = obj@types.hdmf_common.Data(varargin{:});
p = inputParser;
p.Keep... |
f459a99c3ca2f75c97059c2c741f60e3d362c8cd164b049a69fa79340228e183 | MATLAB | 983 | 35 | function cinew = fcn_relabel_partitions(ci)
%FCN_RELABEL_PARTITIONS relabels partitions
%
% cinew = fcn_relabel_partitions(ci) takes as input an ensemble of
% partitions, ci, of dimensions [nodes x partitions] and relabels
% communities in the order in which each community is encountered. Note
% that the re... |
2a0d3941d90adf5b127949dc9fe8ad5ba0657cc07a36bd7044df56b633cab117 | MATLAB | 984 | 41 | function [s] = SHproj(coef, dirs, lmax)
ndirs = size(dirs,1);
ncoef = (lmax+1)*(lmax+2)/2;
for i = 1:ndirs;
dirs(i, :) = dirs(i, :) / norm(dirs(i, :));
end
el = acos(dirs(:,3));
az = atan2(dirs(:,2), dirs(:,1));
Y = zeros(ndirs, ncoef);
for N=0:2:lmax
... |
43c290ba4f585ee9d2976c786015fedf9355452427c96832f2b9d98b1a4edb57 | MATLAB | 984 | 27 | clear
file=dir('ACC*reverse*.mat');
k=1;
for jj=1:length(file)
load(file(jj).name)
n=length(outcome);
n1=fix(n*0.15);
early=[find(outcome(1:n1,1)==3);find(outcome(1:n1,1)==4);];%early phase
late=[find(outcome(n1+1:n,1)==3);find(outcome(n1+1:n,1)==4)]+n1;%late phase
for i=1:Info.Cellnumb... |
62700b777a10f815a13141e5ba5c518f07a19322f9b650d818204bef3eacf7e8 | MATLAB | 984 | 38 | function D=distance_bin(G)
%DISTANCE_BIN Distance matrix
%
% D = distance_bin(A);
%
% The distance matrix contains lengths of shortest paths between all
% pairs of nodes. An entry (u,v) represents the length of shortest path
% from node u to node v. The average shortest path length is the
% characteri... |
e1ec827ecbd432cd4569570103df881b9d01d249701ec211fef93f4c7d68c6c2 | MATLAB | 984 | 53 | function M0 = vox2ras_1to0(M1)
% M0 = vox2ras_1to0(M1)
%
% Converts a 1-based vox2ras matrix to 0-based, ie,
% Pxyz = M0*[c r s 1]' = M1*[(c+1) (r+1) (s+1) 1]'
%
% See also: vox2ras_0to1
%
%
% vox2ras_1to0.m
%
% Original Author: Doug Greve
% CVS Revision Info:
% $Author: nicks $
% $Date: 2007/01/10 22:55:10 $
%... |
df9afd2ff499fbcbfc75f0bb6a89802fe2bd37fb6ca3c478d961f4b965fac110 | MATLAB | 985 | 39 | % Simulations for normally distributed data
% It is expected that all methods perform well
% with Pearson's being the best
mkdir('normal_no_outlier')
cd('normal_no_outlier')
n = 20;
p= 6;
SIGMA = eye(p);
SIGMA(SIGMA==1) = abs(randn(p,1));
tic
[r_alpha,t_alpha,p_alpha,vr,vt,vp] = MC_corrpval(n,p,'Skipped Pearson');
... |
0eeaea127eb94c4fc886bda91a0e4a26df3cf2c05dbc7f1697872c807eddd0cd | MATLAB | 986 | 43 | function [s] = tostring(values)
% convert parameter value to string
% Copyright (C) 2004, 2005 DSS MATLAB package team (dss@cis.hut.fi).
% Distributed by Laboratory of Computer and Information Science,
% Helsinki University of Technology. http://www.cis.hut.fi/projects/dss/.
% $Id: tostring.m 8776 2013-11-14 09:04:48Z... |
4ff9417ca891236fb2c94b7ad76836f92d4af4e122f862abf4097ed9b3cbef16 | MATLAB | 986 | 29 | function [out] = fftn_c(in)
% function [out] = fftn_c(in)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% 2d & 3d centered Fourier transform
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Tatiana Latychevskaia and Hans-Werner Fink
% "Practical algorithms ... |
22c3fabc90c70b38a460047ce9e715b7cc944cff05df283c20f93787309fcbb8 | MATLAB | 988 | 33 | function Q = M2Q(M)
% Convert from rotation matrix to quaternion form
% See: http://skal.planet-d.net/demo/matrixfaq.htm
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: M2Q.m 8776 2013-11-14 09:04:48Z roboos $
d = diag(M(1... |
68221baac2eab34ecf1a90126c0caa0b0b1e5a95a7fe4e97a0ffa5e2a484b3a5 | MATLAB | 988 | 26 | track_count = length(Tracks);
Tracks(track_count).Centerlines = [];
Tracks(track_count).UncertainTips = [];
Tracks(track_count).OmegaTurnAnnotation = [];
Tracks(track_count).PossibleHeadSwitch = [];
Tracks(track_count).Length = [];
Tracks(track_count).TotalScore = [];
Tracks(track_count).ImageScore = [];
Tracks(track_c... |
6b3d5b5919ad311e7a1cf951e59be0edf5f44fee7814b622957028665cada8d0 | MATLAB | 988 | 42 | function [coef, Y] = SHfit(s, dirs, lmax)
ndirs = size(dirs,1);
ncoef = (lmax+1)*(lmax+2)/2;
for i = 1:ndirs;
dirs(i, :) = dirs(i, :) / norm(dirs(i, :));
end
el = acos(dirs(:,3));
az = atan2(dirs(:,2), dirs(:,1));
Y = zeros(ndirs, ncoef);
for N=0:2:lmax
... |
b8dfe3919075fc0851dccd13867f4b5c5562f9f1d1e063e75458f653483cd55d | MATLAB | 988 | 35 | function [section,param]=zPlane2section(zPlane,param)
% Convert a z-plane index to a section and optical index
%
% Purpose
% Identify which physical section and optical section a
% z section comes from.
%
% Inputs
% zPlane - a scalar defining the optical section we will search for. If a vector
% we return an... |
c8babe5256cc891263ecb1efc46bc0a18c453713af74c81e734a376b4333e54b | MATLAB | 988 | 27 | function om_checkombin
% Check if OpenMEEG binaries are installed and work.
%
% Copyright (C) 2010, Alexandre Gramfort, INRIA
% $Id: om_checkombin.m 8954 2013-12-04 10:50:09Z roboos $
% $LastChangedBy: alegra $
% $LastChangedDate: 2010-09-30 11:15:51 +0200 (Thu, 30 Sep 2010) $
% $Revision: 8954 $
[status,result] = sy... |
ebecf32dccdfcf6147df9519c7a913d1982f828c1ed402761dc87967444928f3 | MATLAB | 988 | 36 | function paramsOut = setParams(dParams, paramsIn)
% paramsOut = setParams(dParams, paramsIn)
%
% paramsOut = setParams(dParams, paramsIn)
%
% The output params struct will include the fields of dParams and paramsIn.
% If the same field exists in both of them, the value will be taken from 'paramsIn'
%
%
%%%%%%%%%%%... |
eac4da7417944307bbb799c1cd629a63e5fde06371e231f4bfdca6414b5f1850 | MATLAB | 989 | 45 | %
% Compute the hop plot of the largest connected component. We always
% compute the undirected hop plot (and thus also the undirected
% diameter).
%
% PARAMETERS
% $NETWORK
%
% INPUT
% dat/data.$NETWORK.mat
% dat/info.$NETWORK
%
% OUTPUT
% dat/hopdistr.$NETWORK
% As integer, the number of hops (zero excluded) ... |
5d61aa89c5aad4393c61bab0ccba1ad611c8ccc27a917fdefddd3b3733784c09 | MATLAB | 990 | 33 | function [period_begin, period_finish] = getPeriod(r)
% Input dimensions
[nChannels, nTime, nCases] = size(r);
% Filter parameters
fs = 100000; % sampling rate
fl = 20; % lower bound frequency
fh = 40; % upper bound frequency
% Initialize output
period_begin = zeros(nChannels, nCases);... |
b62900227a92158a1ca8f07790bc2d26adbf77ad5e724e122fa986156f8b7fe0 | MATLAB | 990 | 30 | function target = Fig2SurfFnc(x_fig,targetonfig,tform_fig_inv,F_camera)
%FIG2SURFFNC ±ÌÖÌTvð±±ÉLq
% Ú×à¾ð±±ÉLq
h = x_fig(1);
theta = deg2rad(-x_fig(2));
u = deg2rad(-x_fig(3));
%w = deg2rad(-x_fig(4));
% % FigureãÅÌÀW(px)©çJ_ÌHexapodÀW(mm)ÉÏ·
target = transform... |
79b7ba6c39fc628f249849901282b4cdc9fbbb783cc7cd37c72e8f995b5a41c1 | MATLAB | 991 | 33 | function [hh, xx] = myhist(Var, VarRange, Nbins, Mode)
% remove VarNargins ([lower upper], plot hist
if nargin<4, Mode = 'lin'; end;
if nargin<3, Nbins = 20; end;
if nargin<2, VarRange = [0,1]; end;
if isempty(VarRange), VarRange = [0,1]; end
if ~any(~isnan(Var)), hh=nan; xx=nan; return; end;
Mode = 'lin';... |
3b4103e6c359f121c6d192e304c2ca4879f52552aefd9744d1bbbc21b8d006a8 | MATLAB | 993 | 45 | %
% Get information about one dataset.
%
% DEPRECATED - instead, load individual statistics from dat/statistic.$STATISTIC.$NETWORK
%
% RESULT
% A struct with the following fields
%
% n1,n2 Number of left/right nodes equal in
% unipartite networks
% n Total number of edges
% lines Number of edges, but mot co... |
46a0733002215c1ff33522b8f336a0c909e2d6a58e98b1e243208312ce0d482b | MATLAB | 993 | 40 | %
% The means by nonnegative linear regression.
%
function [U,V] = means_regrn(T, m, n)
r = size(T, 1);
s = round(r * .8);
val = (1+s) : r;
A_training = konect_spconvert(T(1:s, :), m, n);
A_training_mask = (A_training ~= 0);
A_testtraining = konect_spconvert(T, m, n);
A_testtraining_mask = (A_testtraining ~=... |
af5cb3dd3b8922630d9ea87716a1a8a4dbdac3f337d334cf309fd40aaf7b2a96 | MATLAB | 993 | 38 | function [] = Fig02_Example_TimeCourse_OptStim_Song_pIP10L
% Code for plotting the example trace during optogenetic activation of the pIP10 split-LexA in isolated male flies in Fig. 2b.
TargetFileID = 11;
load('Mic_20211103_01_4.mat')
load('OptStim_20211103_01.mat')
TargetTrial = 1;
load('EthogramComb_pIP10L_Chr.mat'... |
ed74dccc9adf4ab3696ee47a3758177546fb41c8caa2e5a1f977292769b9b9f6 | MATLAB | 993 | 39 | function[final_red_vect,final_ident,final_intensities,final_silhouettes,excluded_cellids,final_iscell]=exclude_cells(exclude_redids,uncertain,final_red_vect,final_ident,final_intensities,final_silhouettes,Fall)
iscell=Fall.iscell(:,1);
%% function that will exclude cells from all variables used in procesing
cell... |
e1ac41335757fdd3353eba35e50f95bf3d1c49c64b9cf2b39bdf34c4093fc1c6 | MATLAB | 994 | 28 | % netBurstDetection_trialCycle.m
% Detects Network Bursts (NBs) from the collection of burst event
% trains (trial per trial)
function [NB, NBpattern] = netBurstDetection_trialCycle(BDfolder, IBeIThreshFolder, param)
BDfiles = dirr(BDfolder);
numTrials = length(BDfiles);
NB = cell(1,1);
NBpattern = cell(1,1);
h = wait... |
38facff76b4cc9e4affb0e96b75857c1e0bd49f291be35e39950040038e7cf28 | MATLAB | 995 | 28 | function [out] = ifftn_c(in)
% function [out] = ifftn_c(in)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% 2d & 3d inverse centered Fourier transform
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Tatiana Latychevskaia and Hans-Werner Fink
% "Practical a... |
3ea75ef4d35914a093efc8692e9236f41358587e124276f0120f8e87477852b4 | MATLAB | 995 | 43 | % mglTestPoints2c: an automated and/or interactive test for rendering.
%
% usage: mglTestPoints2c(isInteractive)
% by: Benjamin Heasly
% date: 03/10/2022
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Test rendering some points.
% usage:
% % ... |
4bab243b2fc6b55838e8114ac4e3afc1208c270e6321466cf99b74c4e379dbfb | MATLAB | 995 | 29 | function [kspace,data,msg_out]=example_recon(kspace,Dat,hdr)
% This is an example of a custom Bruker k-space reconstruction plugin.
% If called without input arguments, return the pluse program names that
% this code reconstructs (matched with hrd.acqp.PULPROG)
if nargin==0
kspace = {'my_pulse_program1.ppg','my_puls... |
9fc12b5ed514906b0c16af0c67a6b307728faeeb6dc40c029bc838734664f56f | MATLAB | 995 | 27 | function[out,hout]=SONRealToADC(in,header)
% SONREALTOADC Converts floating point array to int16
% and returns a header with updated scale and offset
%
% Example:
% [OUT,HOUT]=SONREALTOADC(IN, HIN)
% The input data are scaled to fill the maximum range of the int16
% output array. Scale and offset in HOUT are upd... |
6497de8bd2a4a1c134d591601b42827c10599eae8fab25f93b977f4a7f920eeb | MATLAB | 996 | 24 | function [ text ] = getStimStatus( obj )
% Display information about stimulation status.
%
% Syntax:
% GETSTIMSTATUS( obj );
%
% Input parameters:
% * obj - object containg data
%
% Example:
% GETSTIMSTATUS( );
%
% Available at: https://github.com/NCN-Lab/DBScope
% For referencing, please use: Andreia M. Oliveir... |
64795d3eeb587df917781377dc91d8a4810ad7c59390a83420098f6d157c5de7 | MATLAB | 997 | 35 | % determineLegPhase.m
%
% Function to determine phase of each leg, in degrees from -180 to 180.
% Uses Hilbert transform.
%
% INPUTS:
% legPos - matrix of leg positions, num frames x num tracked pts
% legInd - indicies of leg tracked pts
%
% OUTPUTS:
% legPhase - matrix of leg phases, from negative -180 to 180; n... |
c838f5d0f5ad2f57208b9ad22ee379a68fea993022d54b44e8a80455b3125517 | MATLAB | 997 | 43 | function [A xy] = wheel_graph(n)
% WHEEL_GRAPH Construct a wheel graph of order n
%
% The wheel graph is a cycle graph of order n-1 along with an additional
% vertex that connects all the remaining vertices. (Run the example and it
% will be extremely clear if you are still confused.)
%
% [A xy] = wheel_graph(n) retu... |
078f5b211d1ad27fbe5552762357c9f944e321b9aaf4fa0d98c6ff0927b93d2b | MATLAB | 998 | 39 | function [averLp, Lpi] = gretna_node_shortestpathlength(A)
%==========================================================================
% This function is used to calculate nodal shortest path length of a binary
% graph or network G. Harmonic mean is used to address possible condition
% of multiple components.
%
%
% Sy... |
fad53292e661e48906ca4d8dca0f5ae7d705e99daa77eba5f3181c0545f63f7d | MATLAB | 998 | 27 | function [params, s_new] = denoise_fica_kurtosis(params, s, state)
% FastICA kurtosis nonlinearity as DSS denoising function
% [params, s_new] = denoise_fica_kurtosis(params, s, state)
% params Function specific modifiable parameters
% state DSS algorithm state
% s Source signal estimate, matrix ... |
dab1a8bda06220d37ea0bc70a5b2c43c0e320529f81ddc222ad9ec1f5d699ec0 | MATLAB | 999 | 42 | %% display data
maxT = max(vertcat(cleanTracks.trackedFrames));
%create empty data container
dispData = cell(1,max(vertcat(cleanTracks.id)));
for i = 1:length(dispData)
dispData{1,i} = nan(maxT,11);
end
for i = 1:length(dispData)
trackedFrames = cleanTracks(i).trackedFrames;
dispData{1,i}(trackedFrames,:) = c... |
f3a2f07ed17939787fd454a21f810fe89e510df5117ffa587324fe57fa629616 | MATLAB | 999 | 35 | % mglStencilSelect
%
% $Id$
% usage: results = mglStencilSelect(stencilNumber)
% by: justin gardner and ben heasly
% date: 05/26/2006
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Sets which stencil to use, 0 for no stencil
%
% e.g.:
%mglOpen;
... |
61a746b4fd3e6466e30b8b4d6c000fc205320221afef70970119976cedba090a | MATLAB | 1,000 | 24 | function add_ternary_paths
%add_ternary_paths makes ternary_plots functions available to user
%
% This function adds sub-directories of ternary_plots to the path. This
% means ternary_plots functions are normally unavailable until
% "add_ternary_paths" is called in a script. This is done to avoid any
% confl... |
d53dbda3358cfdb57cb7bbc790a6a8d8a8f60c94fc27f5f958d3f546b8c5a73d | MATLAB | 1,000 | 32 | function [detrendedDataRuns, params] = simseq_detrendDataRuns(dataRuns,verbose)
%% Inputs:
% DataRuns array with time series in dimension order time x runs x voxels
%% Outputs:
% detrendedDataRuns
%% Detrend data (see also detrendTSeries as an alternative)
[nFrames,nRuns,nVox] = size(dataRuns);
% Set detrending p... |
dede4e2394f2fd1e170fc76c51ed2bc2dc424791389836c8f7c839c3950961b1 | MATLAB | 1,000 | 41 | function vid = setupvideoTecknet(pos)
imaqreset;
% If there are any problems with video set up:
imaqhwinfo('winvideo');
a=imaqhwinfo('winvideo',1); a.SupportedFormats';
vid(1) = videoinput('winvideo',1,'MJPG_1920x1080');
vid(2) = videoinput('winvideo',2,'MJPG_1920x1080'); %'YUY2_1920x1080'
% Set up the camera
set(... |
295ae826928cb459594a79045c9f46bcc04292853f69a8df18791ef29a414d49 | MATLAB | 1,001 | 32 | function level = getLevel(signal, tFrom, tTo)
%GETLEVEL get the level of signal for each population under each condition
% signal looks like [16, time, 5]
level = zeros(16,6);
for pop = 1:16
for i = 1:6 % 1 is before Stim, 2 is cond 1, 3 is cond 2...
if i == 1
[pks,locs] = findpeaks(signal(pop,:,1));
... |
8f7eb0dc06ce3af4d728b24eeb3ef3f5b2794207aa542d9f8f1613b4b362a28e | MATLAB | 1,001 | 33 | function newpmap = fmri_cleanclusters(pmap,CL_SIZE_THRES,NN_THRES)
% Removes small clusters from a thresholded map.
%
% newpmap = fmri_cleanclusters(pmap,CL_SIZE_THRES,NN_THRES);
%
% inputs:
% CL_SIZE_THRES = threshold for minimum cluster size
% NN_THRES = threshold for minimum number of nearest neighbors
isvectorinpu... |
8a8398c2712e1310866d34146b287d738e0324c81f3d0ef593a79712cb572601 | MATLAB | 1,002 | 39 | % computeSpikeRate.m
%
% Function that takes in vector of indicies for when spikes occured and a
% timing vector to compute spike rate as the inverse of the
% inter-spike-interval
%
% INPUTS:
% spikeInd - vector of indicies for when spikes occured
% t - time at each index, in seconds
%
% OUTPUTS:
% spikeRate - ... |
f2125f8c75e9adc98c7989404d758af496caca4b9425e3b0e216f36a28462a83 | MATLAB | 1,002 | 27 | function [params, s_new] = denoise_dct(params, s, state)
% DCT filter function.
% [s_new, params] = denoise_dct(params, s, state)
% params.mask DCT filter mask
% state DSS algorithm state (not used)
% s Source signal, matrix of row vector signals
% s_new Filtered signal
... |
5a8d167d523ded84499c3f0f5ebe2f10ec76750addd57c3ba27d99405ae4ec50 | MATLAB | 1,004 | 33 | % get2ndHalfStepPhase.m
%
% Helper function for getLegPhaseFromSteps() that takes in step mid min
% position and step end max position to convert a vector of leg positions
% between the two to leg phases between 180 and 360 degrees, with a linear
% mapping.
% For a linear mapping:
% phase = 180(pos + endPos - 2(... |
dbb16a7411e6b2ff700cd7c955f1cebde758319aa139d7ca481e1e9ea8966871 | MATLAB | 1,004 | 52 | <<<<<<< HEAD
function plotDET(FMR, FNMR, curAxes, typScale, optPlot)
narginchk(2,5);
% set the graphics handler
if nargin == 2
curAxes = figure;
end
% number of bins for distributions plot
if nargin <= 3
typScale = 'linear';
end
% color and type of line
if nargin <= 4
optPlot = 'b-';
end
axes(curAxes);
... |
e40bee2a83922d3800c2f206a2252d4637e97f7c8dc9dc0d84e0f03df36dbe0a | MATLAB | 1,004 | 22 | function [strcoil, Coil] = positioncoil(strcoil, Coil, theta, Nx, Ny, Nz, MoveX, MoveY, MoveZ)
%% Define coil position: rotate and then tilt and move the entire coil as appropriate
% Step 1 Rotate the coil about its axis as required (pi/2 - anterior; 0 - posterior)
coilaxis = [0 0 1];
... |
6a2a04490f4da45807ed970eba5e3d0eda3260ec58b45b01529d51afd69c38b8 | MATLAB | 1,005 | 44 | function [zeroX] = ev_zeroXings(SC, U, thresh)
%ev_zeroXings Computes the zero crossings for all eigenvectors in SC
% This computes the min-cut/max-flow of the graph.
% Usage: min_cut = ev_zeroXings(SC, U, thresh)
%
nroi = length(SC);
if ~exist('thresh','var')
thresh = zeros(1,nro... |
96f8babec9bd40949673e6c19f45b74d263bd406e871f4d954a9a7815a382528 | MATLAB | 1,006 | 32 | function [ ] = bemf1_graphics_coil_CAD_3color(coil, flag)
Gc = [0.11 0.93 0.1];
Rc = [1 0 0];
Bc = [0.01 0.01 0.98];
if flag == 1 % x coil
Pfull = coil.P;
p = patch('vertices', coil.PX, 'faces', coil.tX);
p.FaceColor = Rc; % [0.72 0.45 0.2];
p.EdgeColor = ... |
cc071b83c852df0bf14858ce4e295603ce352089a7b6504243321206984f65c0 | MATLAB | 1,006 | 44 | clear;
mu = [0,0,1];
k=35;
N=1000;
[RandWatson] = randWatson(N, mu, k);
figure;
scatter3(RandWatson(:,1), RandWatson(:,2), RandWatson(:,3),3, 'b', 'filled'), axis([-1 1 -1 1 -1 1]);
clear;
mu = [0,0,1];
k=500;
N=1000;
[RandWatson] = randWatson(N, mu, k);
figure;
scatter3(RandWatson(:,1), RandWatson(:,2), RandWatson... |
0e3d1dc6d72f67e3f8c43a7123df6010f81e7253aababb269245f9fac729e67f | MATLAB | 1,007 | 29 | function [exportedFilename] = ml_freezeframe_export_video(freezeframeFilename, frameRate_hz, exportFolder)
%frameRate_hz = 15;
[filepath, name, ext] = fileparts(freezeframeFilename);
if ~strcmp(ext, '.ffii')
error('Can only read FreezeFrame video that end in ".ffii".\n');
end
if ~isfil... |
bb6a126fe74108999c69b318d2a2d2117e74da381886c38043ddf8847d871c4a | MATLAB | 1,007 | 41 | %
% Generate 'slice' from a temporal statistic.
%
% PARAMETERS
% $statistic Name of the statistic
% $network Name of the network
% $type
% $K The slide ID, i.e., column number
%
% INPUT FILES
% dat/statistic_time.$type.$statistic.$network
% The temporal statistics: one timepoint per line, each
% line contains mult... |
313acb37e47634a791de3df4b69b264964df307bc0ee6d722ec84c88fc289d93 | MATLAB | 1,008 | 27 | function balanced_anova(correct_1,incorrect_1,correct_later,incorrect_later,nsample)
%% balanced_anova resamples the data so that all entries have the same
% number of samples (nsample)
nrep=50;
correct=[ones(nsample,1);zeros(nsample,1);ones(nsample,1);zeros(nsample,1)];
first_later=[ones(nsample,1);ones(nsample,1);... |
7a4f35c4667266eaa6b9491698a41b14b5e3fd3c1f87dd8154011f6d8d75fe41 | MATLAB | 1,008 | 30 | function mglEyelinkEDFOpen(filename)
% MGLEYELINKOPENEDF Opens an edf file on the Eyelink computer for writing
% [] = MGLEYELINKOPENEDF(FILENAME)
%
% Opens a file on the Eyelink computer for writing data. The filename must
% be a valid DOS filename
%
% Created by Eric DeWitt on 2010-03-25.
% Copyri... |
fdf7e10afeedc0e4c478b525942a7ef919c9d2f4150ac09640428b46227d5053 | MATLAB | 1,008 | 34 | function [outermost, inside] = find_outermost_boundary(bnd)
% FIND_OUTERMOST_BOUNDARY locates outermost compartment of a BEM model
% by looking at the containment of the triangular meshes describing
% the surface boundaries
%
% [outermost] = find_innermost_boundary(bnd)
%
% with the boundaries described by a struct a... |
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