sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
56cc38a59a1cc26384ffe91d861b7ecf3f949b2f76e8a90e07b0f4586d59971d | MATLAB | 1,561 | 50 | close all
clear all
clc
% The freezeframe videos don't seem to record the frame rate at which they
% were recorded so set this to what it should be.
frameRate_hz = 15;
% Select a folder that contains the video
msg1 = 'Select the folder containing the FreezeFrame-formatted videos';
fprintf('%s\n\n', msg1);
inputFolder... |
e3b2873688973b3eade70fcf11f3b8c0c9668be69a649370bf66b762c6da4b0e | MATLAB | 1,561 | 42 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
function [R] = compute_group_average_rate_differences_within_across_for_table(RateMatricesAveraged)
numGroups = size(RateMatricesAveraged,1);
R = [];
k = 1;
for iGroup = 1:numGroups
groupId = RateMatrices... |
c9b93ec15dc08c4373f6a3a3907af3f14b946d6e32c1b87f5c7d96000d135d23 | MATLAB | 1,562 | 67 | function save_overlay_as_roi(DATA,ROI,AddInfo)
if ~isfield(AddInfo,'ImageOverlay')
errordlg('Image Overlay not defined.','Error','modal')
return
end
% Get Threshold and clim
clim = round(((AddInfo.ImageOverlayClim-AddInfo.ImOverlayMin)*256)./...
(AddInfo.ImOverlayMax-AddInfo.ImOverlayMin));
if clim(1)==clim(2)
if... |
c078886a4fa55fe3d543c4b72afd6e41523571d9424b03a6e3139d2cdca05c3b | MATLAB | 1,563 | 33 | % readDigPort.m
%
% $Id$
% usage: readDigPort(<portNum>)
% by: justin gardner
% date: 09/21/06
% copyright: (c) 2006 Justin Gardner (GPL see mgl/COPYING)
% purpose: read the National Instruments board digital input.
% portNum defaults to 1, to read from Dev1/port1.
% ... |
2955ba39d26dd4cffe4c68bc67a52456ca8233019efb3339c4e92362fc97eded | MATLAB | 1,564 | 56 | function [nrm] = normals(pnt, tri, opt);
% NORMALS compute the surface normals of a triangular mesh
% for each triangle or for each vertex
%
% [nrm] = normals(pnt, tri, opt)
% where opt is either 'vertex' or 'triangle'
% Copyright (C) 2002-2007, Robert Oostenveld
if nargin<3
opt='vertex';
elseif (opt(1)=='v' | opt... |
8ff1e93b1f8d3ce2089ab353e93ce99455955867efec9c389fcd12e96ef45863 | MATLAB | 1,564 | 54 | function posH = calceyeangle_APP(frameData_cam1, frameData_cam2, theta)
%% Angle between two cameras in degree 5/22 DONT CHANGE
if ~exist('theta','var')
theta = 39.8;
end
%% Horizontal
d1 = [frameData_cam1.pupil_x] - [frameData_cam1.cr1_x];
d2 = - [frameData_cam2.pupil_x] + [frameData_cam2.cr2_x];
posH = atand(... |
f265b03f3eea992e8d4f314ddd0f14c2a0d4b5eb684e2ac3ce82a47472f2633c | MATLAB | 1,564 | 33 | function wdm_params = check_wdm_params(wdm_params)
% widefield imaging parameters
% last update: 9/18/2021. YZ
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Run the checks
if isempty(wdm_params) % Make sure that tpm_params is a struc... |
2d2ad6d7fe2632348e8b5f6eaa6d33ea72669021110be98e2ee0cd37241d6afa | MATLAB | 1,565 | 38 | function [asymmetry,abs_asymmetry,sign_sym] = fcn_get_asymmetry(B)
%FCN_GET_ASYMMETRY returns weight/sign asymmetries
%
% [asymmetry,abs_asymmetry,sign_sym] = fcn_get_asymmetry(B) takes as
% input the matrix of regression coefficients and returns, as output, two
% matrices whose elements correspond to differe... |
c6cb385af06e7e65a9d7b71df63c086102b1f0d05de7398fa112fc0bcb32e872 | MATLAB | 1,566 | 46 | function [f F]=motif3struct_bin(A)
%MOTIF3STRUCT_BIN Frequency of structural class-3 motifs
%
% [f F] = motif3struct_bin(A);
%
% Structural motifs are patterns of local connectivity. Motif frequency
% is the frequency of occurrence of motifs around a node.
%
% Input: A, binary directed connectio... |
ffa50537da93594d3279974352b8d847c899f33155458222ecccaac7ec429ae8 | MATLAB | 1,566 | 47 | %{
Copyright (C) Cambridge Electronic Design Limited 2014
Author: James Thompson
Web: www.ced.co.uk email: james@ced.co.uk, softhelp@ced.co.uk
This file is part of CEDS64ML, a MATLAB interface to the SON64 library.
CEDS64ML is free software: you can redistribute it and/or modify
it under the t... |
152340e848d486032d576aee23aaf499d8615a650fd86e85858b60719aa056cd | MATLAB | 1,567 | 41 | function [folders, folder_tags, folder_count] = catalog_tags(folder_name)
% Look through experimental folders recursively and sort out what the
% experimental tags are
folders = {};
folder_count = 0;
folder_tags = cell(0,0);
start_path = '';
if nargin < 1
folder_name = uigetdir(s... |
e39cc4e7ac6600d78f6c8963fc09bc954eac5682f939f156579fdb217e21f292 | MATLAB | 1,567 | 47 | function dm = compileSparseDesignMatrix(dspec, trialIndices)
% Compile information from experiment according to given DesignSpec
expt = dspec.expt;
subIdxs = buildGLM.getGroupIndicesFromDesignSpec(dspec);
totalT = sum(ceil([expt.trial(trialIndices).duration]/expt.binSize));
growingX = sparse([], [], [], 0, dspec.edi... |
4380455d3e023bdbbbd43ce9b9e6fdedaad6257ea2f23019288241e0617a6b6f | MATLAB | 1,568 | 69 | %
% Plot the rating evolution, i.e. the mean rating of each item in
% function of number of ratings. Plot only the fast stuff.
%
% PARAMETERS
% $network
%
% INPUT FILES
% dat/data.$network.mat
%
% OUTPUT FILES
% plot/rating_evolution.[c].$network.eps
%
network = getenv('network');
bins = 10;
font_size = 22;
line... |
68715f3d7992cc2be25845887d53855c3a7fb20c48082c097f60911156e1e0d7 | MATLAB | 1,568 | 63 | function [Head]=SONFileHeader(fid)
% SONFILEHEADER reads the file header for a SON file
%
% HEADER=SONFILEHEADER(FID)
%
% Used internally by the library.
% See CED documentation of SON system for details.
%
% 24/6/05 Fix filecomment - now 5x1 not 5x5
%
% Malcolm Lidierth 03/02
% Updated 06/05 ML
% Copyrigh... |
75de304d64f4c0988d1e0bfa36827ed20dd3b110f97df173fa1c64f057117faa | MATLAB | 1,568 | 32 | function [regular_timestamps_s, regular_ax, regular_ay, regular_az, regular_totalAcceleration, imuFs] = ml_inscopix_imu_compute_total_acceleration_planar( imuData )
imuFs = 50; % Sampling rate of the IMU in Hz
numSamples = length(imuData.IMU_Time_s);
timestamps_s = imuData.IMU_Time_s;
% Find the v... |
7759b47cca709183dc49b42d7a3c3b12af1e39ecd0d93dc6c774ec8c52124146 | MATLAB | 1,568 | 47 | classdef PupilTracking < types.core.NWBDataInterface & types.untyped.GroupClass
% PUPILTRACKING Eye-tracking data, representing pupil size.
% REQUIRED PROPERTIES
properties
timeseries; % REQUIRED (TimeSeries) TimeSeries object containing time series data on pupil size.
end
methods
function obj = PupilTrackin... |
b7a852862cca701464c12ad12fb093129e9bb227703f47c96dade662b034f827 | MATLAB | 1,568 | 38 | % Demo for showing how to use plot_fig_subcortex
% Author: Xinyu Wu and Guoyuan Yang, BIT.
% dependecy: FreeSurfer MRIread functions.
% File must be MNI152 2mm voxel space with size of 109*91*91.
demo_file = fullfile('demo_file', 'HCP_group_principle_functional_gradient.nii.gz');
% Output file path
% We recommend ge... |
c53c40e990da0fbc2e300f46bf74bcfda55303d012b2bb819ec543239323088e | MATLAB | 1,568 | 59 |
% Author: Guosheng Lin (guosheng.lin@gmail.com)
% this is a simpler demo file for testing on your own images.
function demo_test_simple_voc()
rng('shuffle');
addpath('./my_utils');
dir_matConvNet='../libs/matconvnet/matlab';
run(fullfile(dir_matConvNet, 'vl_setupnn.m'));
run_config=[];
run_config.use_gpu=true;
%... |
a9e9dac968451d6db65a1ea616a1b0cdbf20937ccaf93d5c02f1c878ea590ae0 | MATLAB | 1,569 | 65 | clear all;
close all;
load('Alon_Modep');
%%
ctrlLength = length(xDataCtrl.v);
modepMatV = NaN(length(xData.v),2);
modepMatDo2 = NaN(length(xData.do2),2);
modepMatV(:,1) = xData.v;
modepMatV(1:ctrlLength,2) = xDataCtrl.v;
modepMatDo2(:,1) = xData.do2;
modepMatDo2(1:ctrlLength,2) = xDataCtrl.do2;
%%
figure;
st = su... |
11ffecfa67ccd633ae0a15ebb1f9540d94ff65b9ac0b1fa9c162674ed5672dcf | MATLAB | 1,570 | 54 | function R = Rmatrix_ang(rl, ap, fh, inv_flag, order)
% R = Rmatrix_ang(rl, ap, fh, inv_flag)
%% Header
% Purpose:
% make the rotation matrix according to the angulation parameter
% Assuming Tang = Tang = Trl*Tap*Tfh;
% if inv_flag == 1
% making the inverse rotation matrix i.e. Tang_inv =
% Tfh_inv... |
caa1b72ec21e1cb86fec470e03b811bdbbc4fac02dc425c628babca8ff4e5ac8 | MATLAB | 1,570 | 80 | function J=vl_xyz2lab(I,il)
% VL_XYZ2LAB Convert XYZ color space to LAB
% J = VL_XYZ2LAB(I) converts the image from XYZ format to LAB format.
%
% VL_XYZ2LAB(I,IL) uses one of the illuminants A, B, C, E, D50, D55,
% D65, D75, D93. The default illuminatn is E.
%
% See also: VL_XYZ2LUV(), VL_HELP().
% Copyright ... |
01b1913173e9cd08ca2d18af3074020271da01405877721945e212202abc252f | MATLAB | 1,571 | 41 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
function [MeanTable, ErrorTable] = bfotable_compute_group_averages(BFOTable, SessionsToGroups)
% This should work with any BFO90 or BFO180 table
uniquePairs = unique_groups_sessions_to_groups(SessionsToGroups);
group... |
264caecb4138f8e1609b488c2599fb6e15a703c58a9043d9a1eb84222ad34e85 | MATLAB | 1,571 | 51 | function [Fx,Fy] = vl_imgrad(F,varargin) ;
% VL_IMGRAD Image gradient
% [Fx,Fy] = VL_GRAD(F) returns the finite differencies gradient of the
% image F. The function uses central differencies and for all but
% the boundaries pixels, for which it uses forward/backward
% differencies as appropriate.
%
% VL_GRAD... |
ed490be4ccf132275e613e73f61d6bd3ff3877594e690616a01df48e668d4964 | MATLAB | 1,571 | 47 | classdef Position < types.core.NWBDataInterface & types.untyped.GroupClass
% POSITION Position data, whether along the x, x/y or x/y/z axis.
% REQUIRED PROPERTIES
properties
spatialseries; % REQUIRED (SpatialSeries) SpatialSeries object containing position data.
end
methods
function obj = Position(varargin)
... |
44b3e990852f83c6b7aaed174168061970915ed41e90794b4007ed1ef5e7c74e | MATLAB | 1,572 | 43 | % THIS SCRIPT IS ONLY INTENDED FOR USE BY THE PACKAGE MAINTAINER
% Run GNU Octave from a Bash terminal in a unix-based OS with pandoc installed.
% Octave needs to have the following packages installed:
% - generate_html
% - statistics
% - statistics-resampling
% (The documentation was generated with GNU Octave inst... |
2b873785801f973edcebd250520dd9a5f6a6f014f108fcfb9199061bd27200f1 | MATLAB | 1,573 | 75 |
function ds_info=my_gen_ds_info_voc(ds_config)
ds_dir=fullfile('../datasets', 'voc2012_trainval');
train_idx_file=fullfile(ds_dir, 'ImageSets/Segmentation/train.txt');
fid=fopen(train_idx_file);
train_file_names=textscan(fid, '%s');
train_file_names=train_file_names{1};
fclose(fid);
val_idx_file=fullfile(ds_di... |
c0808757280df4e68b5587e2feeacb546c2771d7144097d847873002110dfd8c | MATLAB | 1,573 | 49 | %function for getting IR zones for anophles vidoes
function [Params] = getzones(Params)
Zones = {};
for foldNumber = 1:length(Params.Folders)
cd(Params.Folders{foldNumber})
vidName = Params.vidNames{foldNumber}{1}
vid = VideoReader(vidName)
zFrame = readFrame(vid);
... |
1614c55a1bfde9f288a9f7e880fc23a4b0199984168182f65264a1b005982f0c | MATLAB | 1,574 | 47 | %{
Copyright (C) Cambridge Electronic Design Limited 2014
Author: James Thompson
Web: www.ced.co.uk email: james@ced.co.uk, softhelp@ced.co.uk
This file is part of CEDS64ML, a MATLAB interface to the SON64 library.
CEDS64ML is free software: you can redistribute it and/or modify
it under the t... |
b89b79f22e16464b7fa8302dd43d5e1f29ebdbb72d344927a660e7ecda17bd31 | MATLAB | 1,575 | 44 | % mglMetalSetWindowFrameInDisplay.m
%
% usage: results = mglMetalSetWindowFrameInDisplay(displayNumber, rect, socketInfo)
% by: Benjamin Heasly
% date: 03/11/2022
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Set the mgl window's displayNumber and frame rect... |
bf76ca57532171d1ceb8451ecaf8acd288f52af6a0c989d31291b286760ed70a | MATLAB | 1,575 | 61 | function h = uimagesc(varargin)
%UIMAGESC Display scaled image with uneven axis.
% UIMAGESC(...) is the same as UIMAGE(...) except the data is scaled
% to use the full colormap. See UIMAGE for details.
%
% Note: UIMAGESC is based on Matlab's original IMAGESC, Revision 5.11.4.5.
% UIMAGESC simply calls UIMAGE w... |
664c7632543eb68b143cc60a558537000d45c4c653fb746e28ac76ec77d20305 | MATLAB | 1,576 | 62 | function surfstatcontrastbatch( Data, Model, Surf, Contrast, FilePrefix)
slm_lin = SurfStatLinMod(Data, Model, Surf);
% contrast
slm_con = SurfStatT( slm_lin, eval( Contrast(1) ) );
[ pval, ~, clus, clusid ] = SurfStatP(slm_con);
qval = SurfStatQ(slm_con);
% contrast, another side
invslm_con = SurfStatT( slm_li... |
167015d8ad10bb2f5502085bd6e839bc9b1cba4fad7f5921b7956852109f60f5 | MATLAB | 1,577 | 75 |
function ds_info=my_gen_ds_info_sal(ds_config)
ds_dir=fullfile('/home/lab/lei', 'sal_trainval');
train_idx_file=fullfile(ds_dir, 'ImageSets/Main/saliency_train.txt');
fid=fopen(train_idx_file);
train_file_names=textscan(fid, '%s %s');
train_file_names = train_file_names{1};
fclose(fid);
val_idx_file=fullfile(d... |
332221a57a6e1fae4bab83e96bfa033c57320d30529598d7f5f9669d5b16acc9 | MATLAB | 1,577 | 55 | function imsegs = processSuperpixelImage(segimage, getInfo)
% imsegs = processSuperpixelImage(fn)
% Creates the imsegs structure from a segmentation image
im = double(segimage);
imsegs.imname = 'empty';
imsegs.imsize = size(im);
imsegs.imsize = imsegs.imsize(1:2);
if size(segimage, 3) > 1.
im = im(:, :, 1... |
33bf9f5f83076f12e89a07092a302c463dbb6d37dd4431b867ab55345a54e45d | MATLAB | 1,577 | 43 | %{
Copyright (C) Cambridge Electronic Design Limited 2014
Author: James Thompson
Web: www.ced.co.uk email: james@ced.co.uk, softhelp@ced.co.uk
This file is part of CEDS64ML, a MATLAB interface to the SON64 library.
CEDS64ML is free software: you can redistribute it and/or modify
it under the t... |
7b72c78b738ec7c06143a134cd9c184f390b5b708a22b5fc19a9e97d6354ca77 | MATLAB | 1,577 | 68 | % mglCameraLoadData.m
%
% usage: mglCameraLoadData(filename)
% by: justin gardner
% date: 10/29/19
% purpose: Fucntion to load data file that is stored by mglCameraThread('save');
%
function retval = mglCameraLoadData(filename)
% default return argument
retval = [];
% check arguments
if ~any(nar... |
bf8e45619856e908b1b8d6300a65d25a0e86831fb1144427f019b57bef470ed6 | MATLAB | 1,577 | 65 | % generate_oscil_ex.m
% to generate the two oscillation examples
% with same simulation parameters
% as were used for figures 2-3
%%
clear all;
close all;
clc;
%% add fn paths if not added yet
% assumes script run within local directory
scriptdirs = {
'../../analyze';
'../../figures';
'../../helper_functions';
'../../s... |
371e02dc7008662d523840fd57e2fb910511db4781c8309a96fc27ea629118bf | MATLAB | 1,578 | 43 | function TR_RecordPlot(Experiment, plotH, Type, IDs)
if Experiment.NumGrps>0
width = 0.2;
plotH.NextPlot = 'replacechildren';
plotH.Visible = 1;
Xstr = cell(Experiment.NumGrps);
maxScore = 0;
Data = cell(Experiment.NumGrps);
for g=1:Experiment.NumGrps
Group = Experiment.Groups(g).Gr... |
041fa3d1c6b55b88e0204ece56073db30e9b4cb8c41c26daaa6cde7778b4786c | MATLAB | 1,579 | 40 | function [DM, xd] = ft_preproc_online_downsample_apply(DM, x)
% function [DM, xd] = ft_preproc_online_downsample_apply(DM, x)
%
% Passes signal x (channels times samples) through the downsampler.
% Returns updated downsample model (numSkip!) and downsampled signal.
% Copyright (C) 2010, Stefan Klanke
%
% This file is... |
43619cb07613a4e431d2b641937771c0c16a7d7d5192154b9fd6aa5fbfb80c05 | MATLAB | 1,579 | 45 | function [lambda,efficiency,ecc,radius,diameter] = charpath(D)
%CHARPATH Characteristic path length, global efficiency and related statistics
%
% lambda = charpath(D);
% [lambda,efficiency] = charpath(D);
% [lambda,ecc,radius,diameter] = charpath(D);
%
% The characteristic path length is the average shor... |
51e91c9eb26731a76dea59c4288d744ae61d85db59d678193257316cc1c71df1 | MATLAB | 1,579 | 63 | function [phandle, chandle,flat_coords] = ternary_scatter3(wlimits, name_E, E, name_F, F, ZData, Cbar, varargin)
%ternary_surf Plot surface on axes defined by handle.
%
%
%% Process inputs
% Check input count
if ( nargin < 5 )
error('Too few Inputs')
end
% If user does not spe... |
7b7391b62035fb8332ea331f3c2aacb6df403b5513169b6a1be4bd7863393534 | MATLAB | 1,579 | 73 | %% Type help for help
help Edf2Mat
%% Example 1 for how to use the Edf Converter
%% Converting the EDF File and saving it as a Matlab File
edf0 = Edf2Mat('eyedata.edf');
%% The edf Variable now holds all information
% lets display it:
disp(edf0);
%% And how about just plot it?
plot(edf0);
%% Of course you can als... |
8b041abab57edd68c8ed45c731db143ec044f1f37a8f124aacb42d82427062c9 | MATLAB | 1,580 | 43 | function NS_RecordPlot(Experiment, plotH, Type, IDs)
if Experiment.NumGrps>0
width = 0.2;
plotH.NextPlot = 'replacechildren';
plotH.Visible = 1;
Xstr = cell(Experiment.NumGrps);
maxScore = 0;
Data = cell(Experiment.NumGrps);
for g=1:Experiment.NumGrps
Group = Experiment.Groups(g).Gr... |
934b5b8549798c212c1e037251a0c6f15af74afc89b04f5232c72be0ed231738 | MATLAB | 1,580 | 48 | function object_task_consecutive_trials_init(referenceFolder)
projectType = 'object_task_consecutive_trials';
instanceFolder = uigetdir(pwd, 'Select project instance folder');
if ~exist(instanceFolder, 'dir')
fprintf('Creating instance folder (%s) ... ', instanceFolder);
mkdir(instanceFolder);
fprintf('do... |
969518cd642704325a4ef67c79f5ebff4947c490ab6e6187a880da409794f617 | MATLAB | 1,580 | 61 | % mglDefaultScreenParams.m
%
% $Id:$
% usage: mglDefaultScreenParams()
% by: justin gardner
% date: 04/26/10
% purpose: Get a default screen parameters
%
% screenParams = mglDefaultScreenParams
%
function screenParams = mglDefaultScreenParams(screenParams)
% get host/display name
if nargi... |
4e1479203496a1d18f81e41639ce7064977f5bb959c768624f2824c86641d7b8 | MATLAB | 1,581 | 45 | function [chnsReg,chnsSim] = edgesChns( I, opts )
% Compute features for structured edge detection.
%
% For an introductory tutorial please see edgesDemo.m.
%
% USAGE
% [chnsReg,chnsSim] = edgesChns( I, opts )
%
% INPUTS
% I - [h x w x 3] color input image
% opts - structured edge model options
%
% OU... |
f8f7cb818c4313e0e066b7df7ff004f3e1f0c7fe492c5c1827c34ecda6e4c091 | MATLAB | 1,582 | 34 | % writeDigPort.m
%
% $Id$
% usage: retval = writeDigPort(portNum,val);
% by: justin gardner
% date: 09/21/06
% purpose: write an ouput to the National Instruments board
% copyright: (c) 2006 Justin Gardner (GPL see mgl/COPYING)
% portNum defaults to 2, to write from Dev1/port2.... |
8e403b7264c07a3e2bcdfa58923deb9dae2bf27a445de31d12ab4f8cb42fb573 | MATLAB | 1,583 | 59 | % Function f_FFT.m
%
% Description:
% This function computes the FFT of a signal or matrix of signals.
%
% Inputs:
% pm_ColInMat: input signal or signals (data in columns)
% ps_SampleFreq: data sample frequency
% ps_ZeroMean: set to 1 if the frequency=0 must contain the signal average
% (default: 1)
% ps_TwoSides: se... |
bfaa930926e612ddd797ee28867d459461a10af43ae3b8b9830339de042c7947 | MATLAB | 1,584 | 47 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
function [C] = tetrodes_compute_fraction_occupied(ratemaps, useSmoothed)
C = [];
k = 1;
numAnimals = length(ratemaps.data);
for iAnimal = 1:numAnimals
d1 = ratemaps.data(iAnimal);
animalName = d1.anima... |
0bebdff291ac9cbc4d4b35c539c533996ac0222bd696f8a5287e48243d9012ca | MATLAB | 1,585 | 56 | function vl_demo_kdtree
% VL_DEMO_KDTREE
% Demonstrates the construction of a kd-tree for uniformly
% distributed 2-D data and data distributed on a circle. Both the
% median and mean threshold selection methods are illustrated.
randn('state',0) ;
rand('state',0) ;
% uniform 2D points
Q = single(rand(2,... |
260ed6c8fff4d00fb1edc483ffe9f85f6f328de25f21fc6de6edc737ec8a489e | MATLAB | 1,585 | 34 | function y = Sparse_L_ij(num_columns,npp,N,num_VTA,l5_rec,l23_rec,l5_l23,l23_l5,l23_l23_cross,l5_l5_cross,l_23_l_VTA,l_VTA_l_VTA,noise)
%instantiation of weight matrix
L_ij1 = zeros(N,N);
rho = .3;%.0675;
rho_2 = .1;
for i = 1:num_columns
j = (i-1)*npp*2;
if i < num_columns
L_ij1(j+npp+1:j+(2*np... |
97b9e7f8d47d72a019010c9292335e4065de94c225296e6a869f0f1fe44dbe61 | MATLAB | 1,585 | 59 | function [pvalue] = nbstrp_paired(data,groupID,nItr,method)
%This function is to combine the hierarchical bootstrapping (for
%resampling) and shuffling "resampled" paired data. two-sided test.
% input
% data - paired data. nx2, where n is number of observations.
% groupID - give the same number for observations from t... |
4262f0cec5c15000ee9501cb306a6acc71f34e2b82ff508be7e5b112382d5922 | MATLAB | 1,586 | 41 | %{
Copyright (C) Cambridge Electronic Design Limited 2014
Author: James Thompson
Web: www.ced.co.uk email: james@ced.co.uk, softhelp@ced.co.uk
This file is part of CEDS64ML, a MATLAB interface to the SON64 library.
CEDS64ML is free software: you can redistribute it and/or modify
it under the t... |
6919016c8bc7650c891ca140c5e84f85b085dda12e93437bdaba1a46bce4e423 | MATLAB | 1,586 | 41 | SC=init_system(SC);
%% hadamard masks
M = OPT_S.M;
rads = OPT_S.rads;
[HAD_S.had_mat,HAD_S.row_i,HAD_S.col_j] = hadamard_matrix(M,rads);
[HAD_S.XM,HAD_S.YM]=meshgrid(linspace(-SC.mask_rad_laser,SC.mask_rad_laser,M));
[HAD_S.XM_int,HAD_S.YM_int]=meshgrid(linspace(-(SC.mask_rad_laser-0.1),(SC.mask_rad_laser-0.1),M));
HAD... |
c444d40c0d990c3a16384905b597735c4097de1d912c150b262c79ec5c1852de | MATLAB | 1,586 | 39 | % mglGetGammaTable.m
%
% $Id$
% usage: mglGetGammaTable(fullTable)
% by: justin gardner
% date: 05/27/06
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: returns what the gamma table is set to.
%
% t = mglGetGammaTable
%
% If the ... |
d6ec310dec910fde75efa9adacb038e54ae00e2a5772dcf87ea5fa1ecdc56676 | MATLAB | 1,586 | 51 | function [data] = ml_singleunits_load_ucla_cnmfe( scopeH5Filename, neuronH5Filename, activityName )
% This function loads the cnmfe data into the single unit structure.
if ~isfile(scopeH5Filename)
error('File (%s) does not exist.', scopeH5Filename);
end
if ~isfile(neuronH5Filename)
... |
667395a94ee0c718d8b45a60c2b263de5c78b94c15b0b7fd95bac82ca1c96349 | MATLAB | 1,587 | 29 | function [ text ] = getLeadConfig( obj )
% Display information about lead settings.
%
% Syntax:
% GETLEADCONFIG( obj );
%
% Input parameters:
% * obj - object containg survey data
%
% Example:
% GETLEADCONFIG( );
%
% Available at: https://github.com/NCN-Lab/DBScope
% For referencing, please use: Andreia M. Olive... |
bed07fc3d31229e744f798b9dfce72646e1ef8d13f8c6e1005695956d45599d1 | MATLAB | 1,587 | 39 | function fH = makeFigure2_exampleV1Data(ds, fLMM, lmmResults, projectDir,subjnr, saveFigs, saveFigDir)
% Function to reproduce main manuscript figure 2:
% panel a: V1 time series for each stimulus condition
% panel b: V1 SEQ vs SIM amplitude voxel scatter plot for each stimulus condition
%
% From the paper:
% Title:... |
e962b2b3c3828e952e9cc1bbd50e5277d29e98e8f79e5a91a2398fd619565a74 | MATLAB | 1,587 | 76 |
function [md, fq] = logbinning(X,a, type)
%logarithmic binning
%From "Complexity and Criticality" -- Christensen and Moloney, 2005
%X is the data to be binned
%a > 1 is the binning factor - bins are made from [a^i a^(i+1)].
%type = disc for discrete avalanches, cont for continous. %note discrete
%avalanches n... |
447e4570c743e0c6856d0bfc4b68c3c78c7f847d5184027ef02fa88ffc6c9047 | MATLAB | 1,588 | 56 | function [R2_other_dir,SIstd,SIall]=R2_other(score,idx_dir,idx_duration,ndim,normalised_t)
%% R2_other calculates the coefficient of determination between trajectories
%% of different directions
%
% INPUTS
%
% score: Projection of the neural activity into the subspace. Rows are
% samples, columns are neurons
% ... |
915b9127384b2827634b1a75ab4676d82c5d2905b52c0e5a288aa15e3b83ac30 | MATLAB | 1,588 | 51 | % testradiipupil
% Test pupil radius parameters for initial search
function [pupilStart1,pupilStart2] = testradiipupil(img1, img2, radiiPupil,dbgon)
%% Reserved parameters
alphaFRST = 0.5; % Sensitivity to radial symmetry
fracRemove = .15;
%% Camera 1
% Take the radial transform
imgRadialPupil = Radial_Sym_... |
fc5d2e7cd7bf90732dd140dff303abe1655a11f9550b41028c802dce28c2a991 | MATLAB | 1,588 | 65 | function [phandle, chandle] = ternary_surf(wlimits, name_E, E, name_F, F, ZData, Cbar, varargin)
%ternary_surf Plot surface on axes defined by handle.
%
%
%% Process inputs
% Check input count
if ( nargin < 5 )
error('Too few Inputs')
end
% If user does not specify ZData, plot... |
1d80d7933fb33cb1b35d9c24f548a49d838364829824cb9126d27a327d83a343 | MATLAB | 1,589 | 39 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
function [h] = plot_cell_rate_difference_matrix_by_context(rateMatrix, rateMatrixTrialIds, rateMatrixContextIds)
if size(rateMatrix,1) ~= size(rateMatrix,2)
error('Rate matrix must be square.');
end
rateMatr... |
546c556ef82b70757a89fe642b68c68e2fb6e6e59f0a3270e22ca4a6037be411 | MATLAB | 1,589 | 38 | function [spike_times_ms] = ml_cai_estimate_spikes(timestamps_ms, trace_raw)
cci = ml_cai_estimate_spikes_indices(trace_raw);
if ~isempty(cci)
spike_times_ms = timestamps_ms(cci);
else
spike_times_ms = [];
end
end
function [spike_times_ms] = ml_cai_estimate_spikes_using_mlspike(ti... |
028ba3f8c7a0a3fab056b6bdb8deffa400c9b6256c007eba7d1f065fcc03f559 | MATLAB | 1,590 | 40 | function [h] = ml_sim_nlx_nvt_header(video_width, video_height)
% This code simulates a header that is needed when saving similated data to
% a Neuralynx NVT file.
% The function should be passed in the timestamps and then we determine
% the open and closed information based on those. Hopefully this wo... |
22f537785bd7b3f4c48fa88bccee0466549b0a1db1933166f3d3efeeb0f1bb5d | MATLAB | 1,590 | 83 | %
% Draw overlay of degree distributions over time.
%
% PARAMETERS
% $NETWORK
% $RANDOMIZE '1' to randomize order of edges
%
% INPUT
% dat/split.$NETWORK.mat
%
% OUTPUT
% plot/time_degree.$NETWORK.eps
%
consts = konect_consts();
network = getenv('NETWORK');
randomize = getenv('RANDOMIZE');
randomize = strcmp(... |
80f6653e9e982a8631f98ab51e98c1e134d8c74e74c4e24c4363c74578c00d4c | MATLAB | 1,590 | 34 | function [plp, rp , art_thresh_analog, art_thresh_elec, art_dist, nstd, fs, cancelFlag]= uigetRTSDinfo()
%
% by Mauro Gandolfo (28 Ottobre 2006)
% by VP, March 2010
mfactor=1000;
cancelFlag = 0;
fs = [];
plp = [];
rp = [];
art_thresh_analog = [];
art_thresh_elec = [];
art_dist = [];
nstd = [];
PopupPrompt = {'Stan... |
b9b375eb4e7479c0b92a66b6cd937a60cc3619abc77ebd049c99c3b540307117 | MATLAB | 1,591 | 55 | function [zPlane,param]=section2zPlane(section,param)
% Convert a section vector [physical_section,optical_section] to a z-plane index
%
% function [zPlane,param]=section2zPlane(section,param)
%
%
% Purpose
% Convert a section vector [physical_section,optical_section] to a z-plane index.
% A z-plane index is a scalar d... |
2fc256499bf92c81e9b58f044c05aff0bdefd3c01aecb3cd2f21abe155114028 | MATLAB | 1,593 | 86 | <<<<<<< HEAD
function [zeroFMR, zeroFNMR, iZFMR, iZFNMR] = computeZeroFMRFNMRindex(FMR, FNMR)
% zeroFMR = min(FNMR(find(FMR == 0)));
% zeroFNMR = min(FMR(find(FNMR == 0)));
%
% % correction on indexes
% if isempty(zeroFMR)
% zeroFMR = 1;
% end
% if isempty(zeroFNMR)
% zeroFNMR = 0;
% end
zeroFMR = [];
zero... |
b64bdcd099ac8d7b0f695175f8faedea1a90c6c79d18c01910ddf73277f57001 | MATLAB | 1,594 | 38 | function [minimum_solution, optimal_solution] = ...
simulated_annealing(handle_neighbourhood, handle_loss,...
initial_connection_indices, data_SA)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% If you use this code, then please cite:
% 1.- Ana P. Millan, et al. "Individualized epidemic spreading ... |
b69653328795a6ac416adba57addb29955961cfe13a68f8c5759caf7bd359ed7 | MATLAB | 1,594 | 54 | function t1_3_parameter_fit(DATA,ROI,AddInfo)
% This Aedes plugin calculates T1 three parameter fit maps
% This function is a part of Aedes - A graphical tool for analyzing
% medical images
%
% Copyright (C) 2006 Juha-Pekka Niskanen <Juha-Pekka.Niskanen@uku.fi>
%
% Department of Physics, Department of Neurobiology
%... |
4772b32974c92b55ddd22ded733cf3d1a4893e7acd9df553043456c9d4685461 | MATLAB | 1,595 | 57 | function [pnt, tri] = read_off(fn);
% READ_OFF reads vertices and triangles from a OFF format triangulation file
%
% [pnt, tri] = read_off(filename)
%
% See also READ_TRI, READ_BND
% Copyright (C) 1998, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.ru.nl/neuroimaging/fieldtrip
% for the documen... |
66a1013194b1a54126a80ac10b586d4ef83baa8b696798df2cfbf57aab0d73d4 | MATLAB | 1,595 | 53 | function [ts] = timestamp_plexon(tsl, tsh)
% TIMESTAMP_PLEXON merge the low and high part of the timestamps
% into a single uint64 value
% Copyright (C) 2007, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.ru.nl/neuroimaging/fieldtrip
% for the documentation and details.
%
% FieldTrip is free... |
8254af94885d6a4866a15336c85b096fd797a5dbe2136aadde452ba4f00e666c | MATLAB | 1,596 | 43 | classdef SelectUploadableTest < matlab.unittest.TestCase
% Tests for webupload.allowedNames and webupload.selectUploadable. Each test builds
% its own folder of empty files.
properties
Dir
end
methods (TestMethodSetup)
function makeDir(tc)
fixture = tc.applyFixture(matl... |
99373ae9ed012fdf674fc7c2ece5a73d69fa615c4df813078898e407d3fa86f1 | MATLAB | 1,596 | 43 | function peTrans = getPET(v,g)
%pathway energy transmission (over some duration)
% Detailed explanation goes here
% Connectivity
p_base = [0.1184, 0.1552, 0.0846, 0.0629, 0.0323, 0.0000, 0.0076, 0.0000;
0.1008, 0.1371, 0.0363, 0.0515, 0.0755, 0.0000, 0.0042, 0.0000;
0.0077, 0.0059, 0.0519,... |
b5e023765febae0135cbcf716efd60af9248518b92fddb1dca11103e11259b4d | MATLAB | 1,596 | 49 | %% LOAD
if ismac
load('/Volumes/runyan2/Christian/Processed Data/shuffled_classifier_final.mat')
load('/Volumes/runyan2/Christian/Processed Data/sp_spm_final.mat')
else
load('Y:\Christian\Processed Data\shuffled_classifier_final.mat')
load('Y:\Christian\Processed Data\sp_spm_final.mat')
end
%% Combine ... |
d8913d773f1434a1900e82aa76f66b0c18d9079da2973a6164bb7b659d5a1884 | MATLAB | 1,596 | 48 | %{
Copyright (C) Cambridge Electronic Design Limited 2014
Author: James Thompson
Web: www.ced.co.uk email: james@ced.co.uk, softhelp@ced.co.uk
This file is part of CEDS64ML, a MATLAB interface to the SON64 library.
CEDS64ML is free software: you can redistribute it and/or modify
it under the t... |
29a90733ba68edaadd807b12adf2a512e440ea8473e989db621d2d6e3fa39565 | MATLAB | 1,597 | 38 | function [probe] = getBrainSensitivity(probe)
%GETBRAINSENSITIVITY Returns Brain Sensitivity for each channel
% Calculates Brain Sensitivity for each channel in
% probe.results.lschannels, since this function can only be executed if
% sdrange is defined. It ignores short separation channels since by
% definitio... |
3c4ebcdd0c7293fee1851819e01f75f6c09d3e34f57b1360e16b95526f4bf4c4 | MATLAB | 1,597 | 38 | function [e_surf,x] = EstimateSurface(standard,template,nonlcon)
%ESTIMATESURFACE vª_ standardðü͵Aè³ê½\Ê e_surfðoÍ·é
% Ú×à¾ð±±ÉLq
fun = @(x)distculfcn(x,standard,template);
options = optimoptions(@fmincon,'Algorithm','active-set','PlotFcn','optimplotfval','UseParallel',true,'MaxFun... |
0b63d42d43f7257d4bcf24001b30c912de5992c8850d6db9664889412ba5abb0 | MATLAB | 1,598 | 54 | function t1_saturation_recovery(DATA,ROI,AddInfo)
% This Aedes plugin calculates T1 saturation recovery maps
% This function is a part of Aedes - A graphical tool for analyzing
% medical images
%
% Copyright (C) 2006 Juha-Pekka Niskanen <Juha-Pekka.Niskanen@uku.fi>
%
% Department of Physics, Department of Neurobiolo... |
a120d2eeed5f4b59129777dfdd25e82339025b3fde8ccdcf059746529f878ccf | MATLAB | 1,598 | 76 | function [code, name, rgbv] = read_fscolorlut(fname)
% [code name rgb] = read_fscolorlut(fname)
%
% Reads a freesurfer color lookup table. By default
% reads $FREESURFER_HOME/FreeSurferColorLUT.txt.
%
%
% read_fscolorlut.m
%
% Original Author: Doug Greve
% CVS Revision Info:
% $Author: nicks $
% $Date: 2011/03/... |
04558ef9bb0d6b589c871766db7d2fac2b51e97d7bcaacc598cda89ad30a6d2b | MATLAB | 1,599 | 47 | function [v, vind] = ml_core_max_pixel_rotated_pixel_cross_correlation_90deg(T1, T2, varargin)
p = inputParser;
p.CaseSensitive = false;
checkmatrix = @(x) isnumeric(x) && size(x,1) == size(x,2);
addRequired(p, 'T1', checkmatrix);
addRequired(p, 'T2', checkmatrix);
% By default use all of ... |
6903ac6d21a2652608ae3c0aca5dbdc764dce7679cd4edf07d783ddf9d3bff6f | MATLAB | 1,599 | 53 | function [el, lab] = read_elec(fn);
% READ_ELEC reads "la/mu" electrode parameters from a MBF electrode file
% which are used to position them on a triangulated surface
%
% [el, lab] = read_elec(filename)
%
% where el = [tri, la, mu]
% and lab contains the electrode labels (if present)
%
% See also READ_TRI, TRANSFER_... |
c13ee7d79c57b454e1246fd21947655a585fd7c8e4f74c4cc48448909a1f9f4e | MATLAB | 1,599 | 59 | % endScreen.m
%
% $Id$
% usage: myscreen = endScreen(myscreen)
% by: justin gardner
% date: 12/21/04
% copyright: (c) 2006 Justin Gardner (GPL see mgl/COPYING)
%
% purpose: close screen and clean up - for mgl
%
function myscreen = endScreen(myscreen)
if nargin == 0
disp(sprintf('(endScr... |
dc32468496c5c3b93bbfc7413399dd92d731fff33334149fbe714c6b35c4e2df | MATLAB | 1,599 | 44 | function PC = getPC(v,g)
%GETPC replacement of PET, try to redefine the pathway current
% getPC(v(1:16,strt_prd:end_prd,1:5), g(1:16,1:16,strt_prd:end_prd,1:5));
% Connectivity
p_base = [0.1184, 0.1552, 0.0846, 0.0629, 0.0323, 0.0000, 0.0076, 0.0000;
0.1008, 0.1371, 0.0363, 0.0515, 0.0755, 0.0000, 0.0042, ... |
df3139e0a3b83cb3f0506ca3eff842b68f808e94d6fbc92ae8851be41a15de6b | MATLAB | 1,599 | 44 | function [smoothed_pos_t_s, smoothed_pos_x_cm, smoothed_pos_y_cm, smoothed_speed_cm_s] = ml_alg_posspeed_estimate_2d_sharifi(pos_t_s, pos_x_cm, pos_y_cm, T_s, dmax_cm, maxSpeed_cm_s)
% Compute the unsmoothed velocity
dt = diff(pos_t_s);
dx = diff(pos_x_cm);
velraw_x = dx ./ dt;
dy = diff(pos_y_cm);... |
fdf25bbbb5fe5226d84674c9a5d6c522114315bf6a21477432089f2e45f43976 | MATLAB | 1,599 | 41 | function [Coil_repos] = position_coils(Coil_init)
strcoil_All = [];
Coil_All = [];
coilaxis = [0 0 1];
theta = 0;
for ij =1:Coil_init.len
Coil_init.strcoil_tmp.Pwire = meshrotate2(Coil_init.strcoil.Pwire, coilaxis, theta);
Coil_init.Coil_tmp.P = meshrotate2(Coil_init.Coil.P, coilaxis, theta);
%... |
7cda322db972c03afcfd7414203eef4347e18fcd5c5342d40f359b3bd8d97034 | MATLAB | 1,601 | 52 | function dimsiz = getdimsiz(data, field)
% GETDIMSIZ
%
% Use as
% dimsiz = getdimsiz(data, field)
%
% See also GETDIMORD
if ~isfield(data, field) && isfield(data, 'avg') && isfield(data.avg, field)
field = ['avg.' field];
elseif ~isfield(data, field) && isfield(data, 'trial') && isfield(data.trial, field)
field... |
c92026f4f0d3c69cf0fee02afd2474e81671dda33cbe396020bb4927f467cad7 | MATLAB | 1,601 | 49 | function plotRawDataSurveyInd( obj, varargin )
% plot Indefinite Streaming raw data
%
% Syntax:
% PLOTRAWDATASURVEYIND( obj );
%
% Input parameters:
% * obj - object containg data
% * ax (optional) - axis where you want to plot
%
% Example:
% PLOTRAWDATASURVEYIND( );
%
% Available at: https://github.com/NCN-... |
b52ee969d55933177d63df9f738fe5e6e439d3d6daecd5a76ed0e34d7e0e4d58 | MATLAB | 1,602 | 62 | function mglPlaySound(soundNum)
% mglPlaySound: Play a system sound
%
% $Id$
% usage: mglPlaySound(soundNum)
% by: justin gardner
% date: 02/08/07
% copyright: (c) 2007 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Plays a system sound. After calling mglOpen, all of
% ... |
e759ef88dbca4dd210f0c75c8bb608ddd93e2ffde940f4017127ba53f6cb27bd | MATLAB | 1,602 | 60 | function [Z] = ml_bs_accumulate_xy(bs, x, y, v)
% This function discretizes the position values using the bin system
% and then accumulates the associated value into the respective
% locations. If v is nan, it will not be added.
if isempty(x) && isempty(y)
Z = zeros(size(bs.XX));
return
... |
2569d29594adad3442c3cd2cc02a45e7dd003996678309043b5f929742866ebd | MATLAB | 1,604 | 59 | % endScreen.m
%
% $Id$
% usage: myscreen = endScreen(myscreen)
% by: justin gardner
% date: 12/21/04
% copyright: (c) 2006 Justin Gardner (GPL see mgl/COPYING)
%
% purpose: close screen and clean up - for mgl
%
function myscreen = endScreen(myscreen)
% make sure to display cursor
mglDispl... |
54b6da6773ec9f07e62896136c3eec5be0ec941cda07a23d91c1de23e0a5b92d | MATLAB | 1,604 | 44 | function IntPC = getIntPC(v,g)
%GETPC replacement of PET, try to redefine the pathway current
% getPC(v(1:16,strt_prd:end_prd,1:5), g(1:16,1:16,strt_prd:end_prd,1:5));
% Connectivity
p_base = [0.1184, 0.1552, 0.0846, 0.0629, 0.0323, 0.0000, 0.0076, 0.0000;
0.1008, 0.1371, 0.0363, 0.0515, 0.0755, 0.0000, 0.... |
4a7ea306dcc468c826473c0bc7d80882cdf3dda8a1df47debd68a145e1c62a0a | MATLAB | 1,606 | 40 | % Y = VEC(x) Given an m x n matrix x, this produces the vector Y of length
% m*n that contains the columns of the matrix x, stacked below each other.
%
% See also mat.
function x = vec(X)
%
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko
% Copyright (C) 2005 McMaster University, Hami... |
7336f0cd68798b1d430ab07b89889b0bc1f43704fcf7a56d261c3eda6fb0c6b5 | MATLAB | 1,606 | 51 | function [rmTbl] =reformatTbl(tbl, vars2remove)
%% reformatTbl
% Marc's output is confusing so add a column that indicates session number
% based on the name of the recording. Use column 'dayUsed' to index day of
% testing.
%tbl = analysisResults.RateMatrices;
animals = unique(tbl.animalName);
rmTbl = [];
for a = 1:le... |
7926a09c07c744ebebf5ba1e98b7bdd674c04a958bc2010b822692961cd32de2 | MATLAB | 1,606 | 58 | function [L,dL,ddL] = neglogli_poissGLM(wts,zaso,fnlin)
% [L,dL,ddL] = neglogli_poissGLM(wts,X,Y)
%
% Compute negative log-likelihood of data under Poisson regression model,
% plus gradient and Hessian
%
% INPUT:
% wts [m x 1] - regression weights
% X [N x m] - regressors
% Y [N x 1] - output (binary vector of 1s a... |
f9d3103565a100a77565791df15bcef56a9f253f341b439ebb7ac4729a4da63e | MATLAB | 1,606 | 71 | function [ans, Prefix] = PrefixStatus (Prefix)
%
% [Status, Prefix] = PrefixStatus (Name)
%
%Purpose:
% Determines if the name chosen is a valid for an AFNI Brick
% If you pass a name containing prefix only and no view then
% View is assumed to be +orig
%
%
%Input Parameters:
% Name: a string containin... |
ff7559ec0e481d454bb6d2902a3394291af671a6d3b5e39552b017eead45be6c | MATLAB | 1,606 | 38 | function phi_dt = worm_phase_velocity(ProjectedEigenValues, parameters)
%This function outputs the phase velocity time series given the PCA time series% not used in paper
phase_determining_PCs = [2, 3]; %which PCs are the sine and cosine of worm locomotion
phase_determining_eigen_values = ProjectedEigenValues(... |
d1556a695331544c520b570686f2754df9b3e507975858eaa9f8942db5538404 | MATLAB | 1,607 | 66 | %
% Generate assortativity plots.
%
% PARAMETERS
% $network Name of the network
%
% INPUT
% dat/data.$network.mat
% dat/info.$network
%
% OUTPUT
% plot/assortativity.[auv].$network.eps
%
consts = konect_consts();
network = getenv('network');
data = load(sprintf('dat/data.%s.mat', network));
info = read_info(ne... |
0e60751a1d1e7a3a3dba0ce497fd251a110a269b3e77db9e3fc6dcf126518dc1 | MATLAB | 1,608 | 73 | function [l] = read_label(sname, lname)
% l = read_label(<sname>, lname)
%
% reads the label file 'lname' from the subject 'sname'
% in the subject's label directory into the vector l
% l will be nvertices-by-5, where each column means:
% (1) vertex number, (2-4) xyz at each vertex, (5) stat
%
% IMPORTANT: the vertex ... |
83ec32d4a490c4c424cea923b0a4f827bec455ad9307ad2f2645fef09be9db0f | MATLAB | 1,608 | 50 | % addMyPaths.m
%
% function to add relevant ephys data analysis paths, including subfolders
%
% Users: change the following paths to match those on your local computer
function addMyPaths()
% Determine which computer this code is running on
comptype = computer; % get the string describing the computer type
... |
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