sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
721ea39db703db761d376bf783547ca93c6a018c4e051af44aaeadfc8ee62bc2 | TypeScript | 1,648 | 70 | /**
* NIIvue UIKit Demo Package
*
* This package provides a medical imaging demo that showcases the UIKit components
* integrated with NIIvue for medical visualization.
*/
export interface MedicalParams {
brightness: number
contrast: number
zoom: number
opacity: number
slice: number
crosshair: boolea... |
7b394fbe6bbf642c0e9cf377e34a7d12c7e3461007d1c94a31db021085e43786 | TypeScript | 1,653 | 52 | // src/ipcHandlers/loadVolume.ts
import React from 'react'
import { NVImage, NVMesh, Niivue } from '@niivue/niivue'
import { MESH_EXTENSIONS } from '../../../common/extensions.js'
const electron = window.electron
export interface HandlerProps {
/**
* Returns the proper Niivue instance or creates a new doc if it’... |
a37719c569d10a48b0384d81a91f3c3530f9c4ec1e52ea9b6206b93a12bbb070 | TypeScript | 1,655 | 52 | // src/ipcHandlers/loadMesh.ts
import React from 'react'
import { NVImage, NVMesh, Niivue } from '@niivue/niivue'
import { MESH_EXTENSIONS } from '../../../common/extensions.js'
const electron = window.electron
export interface HandlerProps {
/**
* Returns the proper Niivue instance or creates a new doc if it’s ... |
6647a76986c5a9a5a9a0b9737601a7e4eabb61bc46f7a8503e52d97816e75698 | TypeScript | 1,664 | 58 | /**
* Authentication service for Ray dashboard.
* Provides functions to check authentication mode and authenticate with tokens.
*/
import axios from "axios";
import { formatUrl, get } from "../service/requestHandlers";
/**
* Response type for authentication mode endpoint.
*/
export type AuthenticationModeRespons... |
bc4cdf5b7276625fa872512d1835697514071d18c4370f2cb5bf1ced40bade8a | TypeScript | 1,673 | 63 | import { ServeApplicationStatus } from "../../type/serve";
export const mockServeApplications = {
applications: {
app1: {
name: "app1",
route_prefix: "/app1",
message: null,
status: ServeApplicationStatus.RUNNING,
deployed_app_config: {
import_path: "app1:graph",
},
... |
402758d22c9254ff66a5d94929c62fd14468d62fc81467a1be28fb4df682a2a1 | TypeScript | 1,712 | 56 | import { UIKRenderer } from '../src/uikrenderer'
import { UIKFont } from '../src/assets/uikfont'
/**
* Type extensions for Niivue to include UIKit properties
* This file extends the core Niivue interface to include UIKit renderer and font capabilities
*/
declare module '@niivue/niivue' {
interface Niivue {
/*... |
21218cab125009c008d5b385d38a470abac1f5041b88613180e7589a8eeb6e2b | TypeScript | 1,718 | 45 | import { test, expect } from '@playwright/test'
import { vec3 } from 'gl-matrix'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS, NiivueTestOptions } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
}... |
2f26289666b6ae11b77bec44ab2565400760f61a81f78a9b823f3377d9c44590 | TypeScript | 1,730 | 50 | export function base64ToJson<T = unknown>(base64String: string): T | null {
try {
const decodedString = atob(base64String)
const jsonObject = JSON.parse(decodedString)
return jsonObject as T
} catch (error) {
console.error('Error converting Base64 to JSON:', error)
return null
}
}
export asyn... |
7cdf67263c017bb10a459f3d4f018fe3770d67d0dee2e17de600b74f9c76220c | TypeScript | 1,736 | 48 | describe('File Loading', () => {
it('should load standard MNI152 volume via IPC', async () => {
// Send loadStandard event to renderer
await browser.electron.execute(
(electron, filename) => {
const win = electron.BrowserWindow.getAllWindows()[0]
win.webContents.send('loadStandard', file... |
93be0547e0a5c8578cdcbfe19ad1cea3f16fdcd3eeea0b38fb8eac71d36c40a8 | TypeScript | 1,787 | 67 | import { writeFile } from 'fs/promises'
import { gzip } from 'zlib'
import { promisify } from 'util'
import { dialog } from 'electron'
import { store } from './appStore.js'
import { refreshMenu } from './menu.js'
import path from 'path'
const gzipAsync = promisify(gzip)
export const saveCompressedNVDHandler = async (... |
4010ea76dbc2e2557477b0ee60087ca5854b42c8e524a764423402a3354e0139 | TypeScript | 1,789 | 74 | interface LogLevelMap {
[key: string]: number
}
class Log {
level: string
name: string
constructor({ name = 'niivue', level = 'info' } = {}) {
this.name = `${name}`
this.level = level
}
// map 'debug' 'info' 'warn' 'error' 'fatal' 'silent' to numbers
// for comparison
st... |
b7afa8245e2153fe704d6dea233d4c67e3ad9e0c3befc0e69308fd6febc7cbd9 | TypeScript | 1,790 | 53 | import { sliceTypeMap } from '../../../common/sliceTypes.js'
import { layouts } from '../../../common/layouts.js'
import { SHOW_RENDER, type Niivue, type SLICE_TYPE } from '@niivue/niivue'
/**
* Registers monkey-patches on the Niivue instance to emit IPC events
* whenever view-related methods are called, keeping the... |
bb00aec8e0353d041c7d8eded2d150ca7b990eda8555e696de46d266682ea167 | TypeScript | 1,798 | 61 | export enum TypeTaskStatus {
// Must be in sync with custom_types.py::TaskStatus
NIL = "NIL",
PENDING_ARGS_AVAIL = "PENDING_ARGS_AVAIL",
PENDING_NODE_ASSIGNMENT = "PENDING_NODE_ASSIGNMENT",
PENDING_OBJ_STORE_MEM_AVAIL = "PENDING_OBJ_STORE_MEM_AVAIL",
PENDING_ARGS_FETCH = "PENDING_ARGS_FETCH",
SUBMITTED_TO... |
79bc8c2253c530202a8d98d317df7ebbf9a79087d3173e9e0ed7303ba8aa30b8 | TypeScript | 1,804 | 65 | import { defineConfig, devices } from '@playwright/test'
const isCI: boolean = Boolean(process.env.CI)
/**
* @see https://playwright.dev/docs/test-configuration
*/
export default defineConfig({
testDir: './playwright/e2e',
testMatch: ['**/*.spec.ts'],
testIgnore: ['**/tests-out/**', '**/dist/**'],
... |
8c36b473a5b639d206d8cea18b369ffc7b288f32ab538f52e50692b2ba769a47 | TypeScript | 1,808 | 58 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue tileMargin -1', async ({ page }) => ... |
0d4045e0ba49855727775612b228c5fe6cd30518950a7f1b6441375713f7a30d | TypeScript | 1,837 | 78 | import { get } from "lodash";
import { useState } from "react";
export const useFilter = <KeyType extends string>({
overrideFilters,
onFilterChange,
}:
| {
overrideFilters?: { key: KeyType; val: string }[];
onFilterChange?: () => void;
}
| undefined = {}) => {
const [filters, setFilters] = us... |
80dfb621140128d13a4ae25cb3d11b405fbfc3b23e7990be99d026c62712fddd | TypeScript | 1,869 | 56 | import { useEffect, useState } from "react";
import { get } from "../service/requestHandlers";
let cachedRedactionEnabled: boolean | null = null;
let fetchPromise: Promise<void> | null = null;
// Exported for tests: reset the module-level cache so each test starts fresh.
export const _resetRuntimeEnvRedactionCache = ... |
fea914204d4ab0036a55506feff0ffc474a145067ee196641aade66f9ffd7314 | TypeScript | 1,871 | 57 | /**
* @license
* Copyright 2026 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
d342721917de21ffb9a07da59337ec720a3b6574e225df085ebf5005fb7a9d7f | TypeScript | 1,890 | 43 | import { SLICE_TYPE } from "@niivue/niivue";
export const groupedConfigMeta = {
Text: [
['isOrientationTextVisible', { type: 'boolean', requiresDraw: true }],
['measureTextHeight', { type: 'slider', min: 0, max: 0.2, step: 0.01, requiresDraw: true }],
['fontSizeScaling', { type: 'slider', min: 0.1, max: ... |
e17e9d3d9820def1e0313be27a48b57bc92eaf759681107a26c069b4779f81dc | TypeScript | 1,902 | 68 | import { useRef, useState } from "react";
import useSWR from "swr";
import { API_REFRESH_INTERVAL_MS } from "../../../common/constants";
import { getJobList } from "../../../service/job";
export const useJobList = () => {
const [page, setPage] = useState({ pageSize: 10, pageNo: 1 });
const [msg, setMsg] = useState... |
121fa7250ed328f515d6e662df6b4ec18649b837c3c1bc2a15e5989049c9fe7e | TypeScript | 1,915 | 60 | import { test, expect } from '@playwright/test'
import { Niivue, NVDocument, DEFAULT_OPTIONS, INITIAL_SCENE_DATA } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
page.on('console', (msg) => {
c... |
a685f3f169788590212f7d841c395821fe6b45ee0586bcb8e6327e8dd5b05e70 | TypeScript | 1,959 | 55 | /**
* @license
* Copyright 2026 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
80f1e04bc5e1b43d5b8173043aa8c55d29230c3d4ceb5ea83a3e31855dce35da | TypeScript | 1,983 | 68 | import { describe, it, expect } from 'vitest'
import { nice } from '../../../src/utils/nice'
describe('nice', () => {
describe('with round = true', () => {
it('should round values less than 1.5 to 1', () => {
expect(nice(1.2, true)).toBe(1)
expect(nice(14.9, true)).toBe(10)
expect(nice(0.14, tr... |
3ea01d0ea3b4f0d631fd73660f1a5606df1534c4e8c80854be1dd1ce34d02579 | TypeScript | 1,992 | 57 | import { Dcm2niix } from '@niivue/dcm2niix'
// Each input item either is a File or has this shape:
export interface DicomInput {
name: string
data: ArrayBuffer
}
// Each output item will have a name and data (ArrayBuffer).
export interface ConvertedFile {
name: string
data: ArrayBuffer
}
/**
* Loads DICOM f... |
a887ff112679ea385fc59a86babfe85d628891ecfafcf281fb5e9b478de86018 | TypeScript | 2,024 | 60 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue advanced world-space demo', async ({... |
211c8325768165a523e074481a5b4159aa7e47f32e4977a5c4fdd16a8272e688 | TypeScript | 2,138 | 58 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
// The header is the first 352 bytes, and the image data is dim1 * dim2 * dim3 * nbyper.
// So for the test case with the mni152 i... |
eae90366978c0940fbfb71e6a8cb248f33ee4425a9e4c419b42f906d6e2e6179 | TypeScript | 2,151 | 60 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue load thumbnail preview', async ({ pa... |
b26569969dc06fd5b1e27e7e761585a5e3b219690d244ab46fece3f159620d2b | TypeScript | 2,154 | 53 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue smooth drawing disabled renders disc... |
00e5982f202360799c5e613a1a8f3d0a13bacc606adb2893b271a3ecb5c766de | TypeScript | 2,179 | 84 | /**
* ColormapManager module
*
* Handles colormap assignment and management.
* This module contains functions for:
* - Setting continuous colormaps
* - Setting discrete label colormaps
* - Managing colormap and opacity properties
*/
import type { NVImage } from './index'
import { cmapper, type ColorMap } from ... |
d5be72b1105ad2233c342f9ab5b72ed1179eb0a8b1af3603bc751d26ca08feb5 | TypeScript | 2,213 | 70 | import { GPUStats, TPUStats } from "./node";
export enum ActorEnum {
DEPENDENCIES_UNREADY = "DEPENDENCIES_UNREADY",
PENDING_CREATION = "PENDING_CREATION",
ALIVE = "ALIVE",
RESTARTING = "RESTARTING",
DEAD = "DEAD",
}
export type Address = {
nodeId: string;
ipAddress: string;
port: number;
workerId: s... |
28df626d24fa7b4ef246f60d10601e06613896400b81a465bd9eee8ef2f00d14 | TypeScript | 2,229 | 90 | import { getStateApiDownloadLogUrl, MAX_LINES_FOR_LOGS } from "./log";
describe("getStateApiDownloadLogUrl", () => {
it("only uses parameters provided but doesn't fetch when parameters are null", () => {
expect.assertions(10);
expect(
getStateApiDownloadLogUrl({
nodeId: "node-id",
file... |
bbd110151b85676eb0f95b02a4c0b57c91eb46b9f66f7ca5310d8d1550eab307 | TypeScript | 2,242 | 64 | // src/ipcHandlers/loadDicomFolder.ts
import React from 'react'
import { dicomLoader } from '@niivue/dicom-loader'
import { Niivue, NVImage, NVMesh } from '@niivue/niivue'
import { base64ToArrayBuffer } from '@renderer/utils/base64ToJSON.js'
import { IpcRendererEvent } from 'electron'
export interface HandlerProps {
... |
89d2bafb86a959247b8098c20aff60547885ade59a0eeba38a81a5c27f12a224 | TypeScript | 2,249 | 66 | import { readFile } from 'fs/promises'
import volumeMni152 from '../../../resources/images/standard/mni152.nii.gz?asset'
import volumeChrisT1 from '../../../resources/images/standard/chris_t1.nii.gz?asset'
import meshaal from '../../../resources/images/standard/aal.mz3?asset'
import volaal from '../../../resources/imag... |
dd6673b7820ce29f163ca169911bfd79f3cb778f6ce0705e888b61b281fa5c9c | TypeScript | 2,257 | 55 | /// <reference types="vite/client" />
import { ElectronAPI } from '@electron-toolkit/preload'
import type { CLIOptions, ResolvedInput } from '../../common/cliTypes.js'
declare global {
interface Window {
electron: ElectronAPI & {
startTabDrag: (fileName: string, jsonStr: string) => void
setZoomFacto... |
7dcd31953a91a479d8ce4b19150efbf3fa31839043cd3bb909b8d52492451269 | TypeScript | 2,296 | 63 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue mouse right click and drag draws sel... |
4181b4cf314579625458d858ff1af3f08616845e64b74ba9c9959aa8b5037412 | TypeScript | 2,328 | 74 | import dayjs from "dayjs";
import timezone from "dayjs/plugin/timezone";
import utc from "dayjs/plugin/utc";
dayjs.extend(utc);
dayjs.extend(timezone);
export const formatByteAmount = (
amount: number,
unit: "mebibyte" | "gibibyte",
) =>
`${(
amount / (unit === "mebibyte" ? Math.pow(1024, 2) : Math.pow(1024... |
1e412456ecce76a7e09d324807252243b38a989d6c4843562c6a0c587e0c03d2 | TypeScript | 2,347 | 79 | // src/renderer/src/ipcHandlers/runNiimathCommand.ts
import { Niivue, NVImage } from '@niivue/niivue'
/**
* Register handlers for Niimath completion and errors, decoding
* the compressed output using NVImage.new.
*
* @param setVolumes - React setter for the array of NVImage volumes.
* @param modeMap - Map<requ... |
b9d4cab13eb2db879249130c4a666e054d61fda2e8f80d7a66ba08731d0ba464 | TypeScript | 2,353 | 74 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue setSliceType axial', async ({ page }... |
40fd1140a4466693ae324bf6aef8496c3505b6d028300aeea4c7ffdd9578e9e3 | TypeScript | 2,361 | 73 | // src/ipcHandlers/loadDocument.ts
import React from 'react'
import type { IpcRendererEvent } from 'electron'
import { DocumentData, NVDocument, NVImage, NVMesh, Niivue } from '@niivue/niivue'
import {
base64ToJson,
decompressGzipBase64ToJson,
isProbablyGzip
} from '@renderer/utils/base64ToJSON.js'
const electro... |
46de83078f65af313e324ca5322fb825666133f490d60b4227b8aaeb39deb9c8 | TypeScript | 2,368 | 79 | describe('View Modes', () => {
// Helper to load MNI152 and wait for render
async function loadMNI152(): Promise<void> {
await browser.electron.execute(
(electron, filename) => {
const win = electron.BrowserWindow.getAllWindows()[0]
win.webContents.send('loadStandard', filename)
},
... |
c452ffb84f0107a8f207d452c4876e6ddbb87724330d86f7dfa212c6b8c798b1 | TypeScript | 2,421 | 75 | /**
* This utility file formats and sends HTTP requests such that
* they fullfill the requirements expected by users of the dashboard.
*
* All HTTP requests should be sent using the helpers in this file.
*
* More HTTP Methods helpers should be added to this file when the need
* arises.
*/
import { AxiosRequest... |
2e0eba95347fafa712a897f99e3ce2b455cd65d2e2898fe7822882b93b417f13 | TypeScript | 2,425 | 75 | describe('Menu Actions', () => {
// Helper to load a volume and wait for render
async function loadStandard(filename: string): Promise<void> {
await browser.electron.execute(
(electron, file) => {
const win = electron.BrowserWindow.getAllWindows()[0]
win.webContents.send('loadStandard', fi... |
bf5c6ad6d4b6e0f623813a882a046d9249ddc7e80b58987cf601bb4ff1ab826d | TypeScript | 2,444 | 75 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue calMinMax do not trust header cal mi... |
bc5f481ed8f619b8ce13cef2beac28c5a11234b21b7d20b99bfe660f0b073238 | TypeScript | 2,480 | 69 | import * as fs from 'fs'
import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS, NiivueTestOptions } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
// ge... |
23dfdd367f1ef0e33307c872811e9752bd87c22297a70b132a2f52ecdafdcb39 | TypeScript | 2,481 | 56 | import { isCompressed, decompressAsync, readHeaderAsync, readImage, hasExtension } from 'nifti-reader-js'
import { log } from '@/logger'
import type { NVImage } from '@/nvimage'
import { NiiDataType } from '@/nvimage/utils'
/**
* Reads NIfTI format image (.nii, .nii.gz), modifying the provided NVImage header
* and r... |
ec763f25b0c4c6ad01aec5d25a23a7f7108b689add353b3d8e089eb26f752263 | TypeScript | 2,548 | 80 | /**
* @license
* Copyright 2017 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
24361dec9b2ad438e06e9590ad984ed0cf6d364b5d73698af2647a7aed52671f | TypeScript | 2,588 | 47 | import { expect, test } from 'vitest'
import { NVMeshLoaders } from '../../src/niivue/index.js' // note the js extension
function base64ToArrayBuffer(base64: string) {
const binary_string = atob(base64)
const len = binary_string.length
const bytes = new Uint8Array(len)
for (let i = 0; i < len; i++) {
bytes... |
927e995a1b9fb66dd7ceabba75ee5afe455b2aae90cac996fde3ba5a8acc2250 | TypeScript | 2,590 | 105 | /**
* Read data from stdin with timeout
* Expects base64-encoded data for binary files
*/
export async function readStdin(timeout = 120000): Promise<string> {
return new Promise((resolve, reject) => {
// Check if stdin is a TTY (interactive terminal)
if (process.stdin.isTTY) {
reject(new Error('No da... |
1fa5eb811157123c4b52309261e1c1333910a1bf95e6ee58541e7bb180c00e74 | TypeScript | 2,603 | 99 | import readVox from 'vox-reader'
import * as nifti from 'nifti-reader-js'
interface VoxXYZI {
x: number
y: number
z: number
i: number
}
interface VoxColor {
r: number
g: number
b: number
a: number
}
interface VoxData {
size: {
x: number
y: number
z: number
}
xyzi?: {
values: Vox... |
5b686e7b515f22ce40151591209b5f098ff4117af0a50f712b74d48d934c3e74 | TypeScript | 2,631 | 82 | /**
* ImageMetadata module
*
* Handles image metadata access and configuration management.
* This module contains functions for:
* - Getting NIfTI metadata (dimensions, datatypes, etc.)
* - Getting and updating image options
* - Managing image configuration settings
*/
import type { NVImage } from './index'
im... |
0c7ddb3abbc39bddfd46e017b3425abc732f3c99ed639fa8bc5f721aec8223e7 | TypeScript | 2,646 | 77 | describe('Preferences', () => {
// Note: WebdriverIO electron.execute uses the main process, but we need renderer process
// So we use a different approach - execute in renderer context via executeScript
describe('Get Preferences', () => {
it('should retrieve preferences from store', async () => {
// U... |
006b3485592c4e3346560b746849e0c17225a22c16174e41e2c41c89a524f54a | TypeScript | 2,650 | 84 | /**
* @license
* Copyright 2026 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
0e74819cf6b4b325a41ec644ddd2a78b5cabcd06a4e274fd63fea51d403ee4f5 | TypeScript | 2,664 | 75 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue removeVolume', async ({ page }) => {... |
8958ae6c79e8f797602b91d8f624db78457189ed2a2ead0f9b1a27495a718339 | TypeScript | 2,665 | 72 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue applyVolumeTransform translates over... |
b6a46f3a2d6f3eca6e291b58949f684deb4475a44524584b5b857ce777e81a6b | TypeScript | 2,694 | 70 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue tractography regression: mesh should... |
a11f0696b490f1acd6a753a34413b4bec34a59c38fb5afb1e2ccbb183e7a2d77 | TypeScript | 2,704 | 83 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue with two instances and bounds', asyn... |
5acda04b4dc2edb1ae4182a51a2a123f8c024db8b772da070237b951d8b067d2 | TypeScript | 2,722 | 75 | /**
* @license
* Copyright 2016 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
54f28ea02e956be2450361fd7d223731f0bfa7e1aa13221b224ec8615a686019 | TypeScript | 2,733 | 77 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue mouse move updates renderAzimuth and... |
2f2fefbd087f5a420bc634f1d43a8509900724c89ab7da0fc2006e7657911356 | TypeScript | 2,743 | 83 | // Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import { Project, QualitySettings, Task } from 'cvat-core-wrapper';
export function sorter(path: string) {
return (obj1: any, obj2: any): number => {
let currentObj1 = obj1;
let currentObj2 = obj2;
let field1: string |... |
9254de6065acbfda36c6a9ee181bc79945a7098106b361cad6234e1fe2d18f45 | TypeScript | 2,748 | 87 | /**
* Volume colormap management functions for handling colormap textures and label colormaps.
*/
import { NVImage } from '@/nvimage'
import { Shader } from '@/shader'
/**
* Parameters for refreshing colormaps
*/
export interface RefreshColormapsParams {
gl: WebGL2RenderingContext
colormapTexture: WebGLTe... |
b7a7fbe94f0fadf2b0edbc844497f4cdcfdb3788524c72507f9bc429cb03f49f | TypeScript | 2,761 | 111 | import { Actor } from "./actor";
import { Raylet } from "./raylet";
import { Worker } from "./worker";
export type NodeDetail = {
now: number;
hostname: string;
ip: string;
cpu: number; // cpu usage
cpus?: number[]; // Logic CPU Count, Physical CPU Count
mem?: number[]; // total memory, free memory, memory... |
673ea6b2a13152f6af12b4b342295ab329d49711df44dc74d9a0a3cd9bdd14b2 | TypeScript | 2,764 | 85 | /**
* @license
* Copyright 2018 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
ca5f7aca2be46ce1e5f0b95b9fa0cecc254e9cad6cdaa8024ef8398fed6b4dc6 | TypeScript | 2,771 | 110 | import { get } from "./requestHandlers";
export const MAX_LINES_FOR_LOGS = 50_000;
export type StateApiLogInput = {
nodeId?: string | null;
/**
* If actorId is provided, nodeId is not necessary
*/
actorId?: string | null;
/**
* If taskId is provided, nodeId is not necessary
*/
taskId?: string | ... |
fc9ad974e84dcc9c072de9f4b0a4cefec6350302444ad97a5ae35d419cff5eee | TypeScript | 2,785 | 80 | // src/ipcHandlers/loadRecentFiles.ts
import React from 'react'
import { NVImage, NVMesh, Niivue, NVDocument, DocumentData } from '@niivue/niivue'
import { MESH_EXTENSIONS } from '../../../common/extensions.js'
import {
base64ToJson,
decompressGzipBase64ToJson,
isProbablyGzip
} from '@renderer/utils/base64ToJSON.... |
d60cda17e9addd6308dc765b5a06abf3c532746eb768595b82912557f6cbcf69 | TypeScript | 2,791 | 91 | /**
* @license
* Copyright 2026 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
0c4e89ec56cfbd55e15b3dd3737b25065e037a187e7c2a5bf4be3714fe32d3dc | TypeScript | 2,818 | 80 | /**
* Regression test for https://github.com/niivue/niivue/issues/862
*/
import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddressFlexbox } from './helpers.js'
test.beforeEach(async ({ page }) => {
await page.setViewportSize({ width: 600, height: 600... |
9160a3ae920fdb624b7b1a4673aba1a6948e97a6bf8957fd0b92b87c325bba7a | TypeScript | 2,842 | 115 | /**
* CLI Options interface for headless subcommand architecture
*/
export interface CLIOptions {
/** The subcommand to execute */
subcommand: 'view' | 'segment' | 'extract' | 'dcm2niix' | 'niimath' | null
/** Second-level subcommand (for dcm2niix: 'list' | 'convert') */
subcommandMode?: string
/** Input fi... |
9e57cde58fa9a8f97e98207f741c73751f3aa2132a3e4d5734bae9447b8941a5 | TypeScript | 2,861 | 94 | import _ from "lodash";
import { useState } from "react";
import useSWR from "swr";
import { API_REFRESH_INTERVAL_MS } from "../../../common/constants";
import { getNodeList } from "../../../service/node";
import { useSorter } from "../../../util/hook";
export const useNodeList = () => {
const [msg, setMsg] = useSta... |
8fee406555e20a94b3bd61128fc4079b058965ab4f14fc054fa779d9e239f2a0 | TypeScript | 2,881 | 77 | import { log } from '@/logger'
// shader.js is taken from github user Twinklebear: https://github.com/Twinklebear/webgl-util
// Compile and link the shaders vert and frag. vert and frag should contain
// the shader source code for the vertex and fragment shaders respectively
// Returns the compiled and linked program,... |
2f39f00091178cbf2960cccfd9725668845dd76f825075a4a11e9299d3f73193 | TypeScript | 2,882 | 79 | /**
* @license
* Copyright 2026 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
d910cf7ee8e7b332ccd1e3367af5cd8eb6e6e64037d8cd66339a88da7f377e5b | TypeScript | 2,884 | 86 | import { v4 as uuidv4 } from '@lukeed/uuid'
export abstract class UIKAsset {
protected gl: WebGL2RenderingContext
protected texture: WebGLTexture | null = null
protected width: number = 0
protected height: number = 0
public id: string
constructor(gl: WebGL2RenderingContext) {
this.gl = gl
this.id ... |
2e5ca9e9551d604d3c34e272700d615da67ded44d187749337fee9de15119472 | TypeScript | 2,897 | 139 | import type { NVImage } from '@niivue/niivue'
import type * as tf from '@tensorflow/tfjs'
/**
* Segmentation model types
*/
export type ModelType = 'tissue-segmentation' | 'brain-extraction' | 'parcellation'
/**
* Model category for organization
*/
export type ModelCategory = 'Tissue Segmentation' | 'Brain Extrac... |
2c67b3292fd8314f5139fc42c061c50c5c698304546b196b47c04ec3361c16e9 | TypeScript | 2,909 | 97 | import { log } from '@/logger'
// Internal function to compress drawing using run length encoding
// inputs
// data: Uint8Array to compress
// output
// returns rle compressed Uint8Array
export function encodeRLE(data: Uint8Array): Uint8Array {
// https://en.wikipedia.org/wiki/PackBits
// run length encoding
... |
761f0f70efbe422cdd8d0ce4a117eefcfcdba9bda8ed288dbaa35bb2ed609cff | TypeScript | 2,915 | 88 | // Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import { AudioIntervalState } from 'cvat-core-wrapper';
import { toClipboard } from 'utils/to-clipboard';
import { clamp } from 'utils/math';
export interface AudioTimeRange {
start: number;
end: number;
}
export interface AudioPlaybackR... |
96a0b2b8aea362ac58506be7f529d15b5e4944ac59bc9e6a6ad7424ccc7932c8 | TypeScript | 2,963 | 87 | // src/ipcHandlers/loadStandard.ts
import React from 'react'
import { DocumentData, NVDocument, NVImage, NVMesh, Niivue } from '@niivue/niivue'
import { MESH_EXTENSIONS } from '../../../common/extensions.js'
import {
base64ToJson,
decompressGzipBase64ToJson,
isProbablyGzip
} from '@renderer/utils/base64ToJSON.js'... |
1b01c68906d681e2d6338d3ea75450b68f585ed15e306a2f640ce9ef8d653391 | TypeScript | 2,986 | 103 | // packages/niivue-desktop/electron.vite.config.ts
import { resolve, dirname } from 'path'
import { fileURLToPath } from 'url'
import { defineConfig } from 'electron-vite'
import react from '@vitejs/plugin-react'
const __filename = fileURLToPath(import.meta.url)
const __dirname = dirname(__filename)
/**
* electron-v... |
1e909d4e1a80cb2bfba9641ef7042480fe8731c6d3d500b81569e80684fd85e0 | TypeScript | 3,000 | 75 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddressSync } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddressSync)
})
test('niivue broadcastTo', async ({ page ... |
fa2d0a7d0fef23369804f31e12ec9a8eebe834e1ab360099f8ce7d49fe686e78 | TypeScript | 3,054 | 90 | import { log } from '../../src/logger';
import { expect, test, describe, beforeEach, vi } from 'vitest'
describe('Logger', () => {
beforeEach(() => {
// Reset log level and name before each test
log.setLogLevel('debug');
log.setName('niivue');
});
test('should set the log level corr... |
a7dfec1b44c85bc2ed21fff7f8eb12475094f4170cb54506632263a36c300e03 | TypeScript | 3,074 | 91 | import { Volume, NiftiHeader } from '@/types'
import { NVUtilities } from '@/nvutilities'
// rotate image to match right-anterior-superior voxel order
export function img2ras16(volume: Volume): Int16Array {
// return image oriented to RAS space as int16
const dims = volume.hdr.dims // reverse to original
c... |
d38353bf73e92f6cd25d3ca4a96f0e515909753183c7aa1608b48e01b20b06a1 | TypeScript | 3,083 | 123 | import { Actor } from "../../../type/actor";
const MOCK_ACTORS: { [actorId: string]: Actor } = {
ACTOR_1: {
actorId: "ACTOR_1",
jobId: "01000000",
address: {
nodeId: "426854e68e4225b3941deaf03c8dcfcb1daacc69a92711d370dbb0e1",
ipAddress: "172.31.11.178",
port: 10003,
workerId: "b8b... |
a542c20ff99b066aa0f70bc337ca1a9ee1fe29d7ed989b3488284509761e5d00 | TypeScript | 3,084 | 107 | // src/ipcHandlers/draw.ts
import { Niivue } from '@niivue/niivue'
const electron = window.electron
/**
* Listen for 'draw-command' from the main menu,
* execute it on the current Niivue instance, then persist
* the updated opts back into your AppContext.
*/
export function registerDrawHandler(
nv: Niivue
// ... |
a17b6e689e2280b54732039d5f24da6c71be55e0d8089348bddf1a93610f1625 | TypeScript | 3,104 | 78 | import { NIFTI1 } from 'nifti-reader-js'
import type { NVImage } from '@/nvimage'
import { NiiDataType } from '@/nvimage/utils'
/**
* Helper function to convert an ArrayBuffer to ImageData using the browser's Image API.
* @param buffer - ArrayBuffer containing image data (BMP, PNG, JPG, etc.)
* @returns Promise res... |
16abf7ab1c09914f5dccaff071015e58462a8c79b941ffa2ea4c8fa3837d9406 | TypeScript | 3,119 | 120 | import { get } from "../../service/requestHandlers";
const GRAFANA_HEALTHCHECK_URL = "/api/grafana_health";
const PROMETHEUS_HEALTHCHECK_URL = "/api/prometheus_health";
const TIMEZONE_URL = "/timezone";
export type DashboardUids = {
default: string;
serve: string;
serveDeployment: string;
data: string;
};
ty... |
ee7a44ad87b212f67563a21259ea1dd56dea61e5cf45ec463cd81999e3a287eb | TypeScript | 3,124 | 106 | export enum LabelTextAlignment {
LEFT = 'left',
RIGHT = 'right',
CENTER = 'center'
}
export enum LabelLineTerminator {
NONE = 'none',
CIRCLE = 'circle',
RING = 'ring'
}
export enum LabelAnchorFlag {
NONE = 0,
LEFT = 1 << 0,
CENTER = 1 << 1,
RIGHT = 1 << 2,
TOP = 1 << 3,
... |
31c3519daae08da65c49b684bcd6e1a46478803cba58a31e39cba97c56eff333 | TypeScript | 3,138 | 92 | import type { ModelType, ModelCategory } from './types.js'
/**
* Schema for settings.json files that accompany brainchop models.
* This enables self-describing models that can be loaded without manual configuration.
*/
export interface ModelSettings {
name: string
description: string
type: ModelType
outputC... |
942fafb355523a4cc0f15b567b8cb71335670cccdf37708d47740350cda23d8d | TypeScript | 3,201 | 132 | import { spawn } from 'child_process'
import path from 'path'
import { fileURLToPath } from 'url'
const __dirname = path.dirname(fileURLToPath(import.meta.url))
export interface CLIResult {
stdout: string
stderr: string
exitCode: number
}
/**
* Run the niivue-desktop CLI with the given arguments
* @param arg... |
5c074b20883e508353e9249678ca01a2389eff3e2eca22184ea0f9856237fe86 | TypeScript | 3,224 | 125 | import { GPUStats, TPUStats } from "../type/node";
import { normalizeAccelerators } from "./accelerator";
describe("normalizeAccelerators", () => {
it("handles undefined inputs", () => {
expect(normalizeAccelerators(undefined, undefined)).toEqual([]);
});
it("normalizes gpus correctly", () => {
const gp... |
48939c258c768a9c50afc29688b54ad744d75d3ac2bdc05bce8ba9afca43367f | TypeScript | 3,250 | 107 | import type { Options } from '@wdio/types'
import { execSync } from 'child_process'
import path from 'path'
import { fileURLToPath } from 'url'
const __filename = fileURLToPath(import.meta.url)
const __dirname = path.dirname(__filename)
// IMPORTANT: Unset ELECTRON_RUN_AS_NODE to allow Electron to run as an app, not ... |
76027fa7736721890d8a758486b6e3eb078d922e6ceb2c5ac0458c5baccc87c2 | TypeScript | 3,255 | 133 | /**
* ZarrChunkCache - LRU cache for zarr chunks (TypedArrays).
*
* LRU cache that stores TypedArrays.
* TypedArrays are garbage collected automatically, so no explicit cleanup needed.
*/
export type TypedArray = Uint8Array | Uint16Array | Int16Array | Int32Array | Uint32Array | Float32Array | Float64Array
expor... |
bb3b60b8dffd3bcae7ba5d9d567e670bba0f38fa3a2ec4e352c57bfc37501d7e | TypeScript | 3,256 | 178 | import { blueGrey, grey, lightBlue } from "@mui/material/colors";
import { createTheme, ThemeOptions } from "@mui/material/styles";
const basicTheme: ThemeOptions = {
typography: {
fontSize: 12,
fontFamily: [
"Roboto",
"-apple-system",
"BlinkMacSystemFont",
'"Segoe UI"',
'"Helve... |
9091578ddc8d960f49ff37152e63d676cabbe7973179b864012c862b99ad03c1 | TypeScript | 3,265 | 91 | // Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import { CombinedState } from 'reducers';
import { ActionUnion, createAction, ThunkDispatch } from 'utils/redux';
import { selectionActions } from './selection-actions';
export enum BulkActionsTypes {
START_BULK_ACTION = 'START_BULK_ACTION',
... |
6f113925629f35dbd8c23604aa52c17d24f9c9ae5fd619c6a3d3b6f7234d070d | TypeScript | 3,321 | 161 | import { vec3 } from 'gl-matrix'
import { LUT } from '@/colortables'
export type ValuesArray = Array<{
id: string
vals: Float32Array
global_min?: number
global_max?: number
cal_min?: number
cal_max?: number
}>
// export type AnyNumberArray = number[] | TypedNumberArray
export type AnyNumberAr... |
7ff9e978f173ebbe5b352b90f516b2e1abf7a3fdaa066305fa29ec55fa6f7c46 | TypeScript | 3,323 | 123 | // Copyright (C) 2019-2022 Intel Corporation
// Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import PluginRegistry from './plugins';
import {
LabelType, ModelProviders, ModelKind, ShapeType,
} from './enums';
import {
SerializedModel, ModelParams, MLModelTip, MLModelLabel,
} from './cor... |
2f17658f76a44a7c7a7b66383a6da8c24a4667c788a2e1e69082853905413f0d | TypeScript | 3,335 | 112 | // Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import { ObjectState, ObjectType } from 'cvat-core-wrapper';
const OBJECT_DRAG_ID_PREFIX = 'object:';
const LAYER_DRAG_ID_PREFIX = 'drag-layer:';
const LAYER_DROP_ID_PREFIX = 'layer:';
const LAYER_OBJECT_DROP_ID_PREFIX = 'layer-object:';
const LA... |
3678b360771530dc856be01573ceed4f881a5cf65984a8db5ab786841144547a | TypeScript | 3,343 | 114 | /**
* ZarrProcessor module
*
* Handles Zarr format-specific loading logic:
* - Parses Zarr URL parameters for slice selection
* - Fetches Zarr array data from remote stores
* - Handles 3D and 4D array slicing
* - Validates slice indices against array dimensions
*
* Zarr is a cloud-optimized format for chunked,... |
6730cbcb33d4d133cd6b4c1b81fa8478b6be9dfdcd19d7ebdf8b4e6183a536c5 | TypeScript | 3,363 | 134 | export enum ServeApplicationStatus {
// Keep in sync with ApplicationStatus in python/ray/serve/_private/common.py
NOT_STARTED = "NOT_STARTED",
DEPLOYING = "DEPLOYING",
RUNNING = "RUNNING",
DEPLOY_FAILED = "DEPLOY_FAILED",
DELETING = "DELETING",
UNHEALTHY = "UNHEALTHY",
}
export type ServeApplication = {... |
64e114df90392c82705d9fd17828c5dac5dbae049087a7794166b4e2f62ee94a | TypeScript | 3,408 | 135 | // types.ts
import { vec2, vec3, vec4 } from 'gl-matrix'
import { UIKFont } from './assets/uikfont'
// Define Color type for clarity
export type Color = [number, number, number, number] | Float32List
// Define Vec2, Vec3, and Vec4 types
export type Vec2 = vec2 | [number, number]
export type Vec3 = vec3 | [number, nu... |
7e2f724fe5ccce93b93d6de5b0ad7b26bd1fd0e2249533a18dc2171ca8af8f80 | TypeScript | 3,477 | 85 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
// Regression test for https://github.com/niivue/... |
3f49fcec5287e09076bc7cbf79b9c58d781339f5d292a8162bef2330e612cb84 | TypeScript | 3,532 | 109 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test.skip('niivue mesh features demo: mesh tradeo... |
a16a83f3c907a957e2c7fc2e93b846c4c64149735abf4aa98ae23a8d99aa273e | TypeScript | 3,557 | 93 | import { NIFTI1 } from 'nifti-reader-js'
import type { NVImage } from '@/nvimage'
import { NiiDataType } from '@/nvimage/utils'
/**
* Helper function to convert ZXY RGB data to XYZ format for Zarr arrays.
* @param data - Input data in ZXY order
* @param X - Width dimension
* @param Y - Height dimension
* @param Z... |
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