sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
5e5912ec989ccbf1cd7e1993e620294a7592ff5874e12223960928ccb2750f48 | TypeScript | 3,642 | 117 | // Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import {
SerializedApiToken, SerializedUser, SerializedUserGrowthData,
} from './server-response-types';
import { QualityRequirementAnnotationType } from './quality/server-response-types';
import { JobType } from './enums';
import { Camelized,... |
ba55858300c5b1847f2692d09704a3e358c4cf9795343ab86683344d72df599b | TypeScript | 3,675 | 129 | /**
* Camera controller helper functions for 3D camera control (azimuth, elevation, zoom, pan).
* This module provides pure functions for camera-related calculations.
*
* Related to: 3D view rotation, 2D pan/zoom, camera state management
*/
/**
* Normalize azimuth angle to 0-360 range.
* @param azimuth - Azimut... |
335a40a3bc1b9f33cc9998fd426c7740aca39aa02c1db756b9c052172571c429 | TypeScript | 3,724 | 118 | import { Log } from './utilities/log'
// Helper function to compile a shader
export const compileShader = function (
gl: WebGL2RenderingContext,
vert: string,
frag: string
): WebGLProgram {
const vs = gl.createShader(gl.VERTEX_SHADER)
if (!vs) {
throw new Error('Failed to create vertex shad... |
b2bb2775bfd7dc269cd8ee315c5572710f9130e1febb374bf55148362f0cea5f | TypeScript | 3,736 | 118 | import { expect, test, describe, vi } from 'vitest'
import { drawUndo } from '../../../src/drawing/undo'
import { decodeRLE } from '../../../src/drawing/rle'
vi.mock('../../../src/logger', () => ({
log: {
debug: vi.fn()
}
}))
vi.mock('../../../src/drawing/rle', () => ({
decodeRLE: vi.fn()
}))
describe('dra... |
a7d46902353104d06e74d537b2241e433f7804f3e9769639ef0faf1d9db63228 | TypeScript | 3,742 | 102 | // Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import { Config } from '@react-awesome-query-builder/antd';
import asyncFetchUsers from 'components/resource-sorting-filtering/request-users';
export const config: Partial<Config> = {
fields: {
state: {
label: 'State',
... |
33116e4d2907e227bffdc8198db5bb3cfd663e9543e6d122bb226eac09e8b8c7 | TypeScript | 3,800 | 72 | export { default as $itksnap } from './_itksnap.json'
export { default as $slicer3d } from './_slicer3d.json'
export { default as actc } from './actc.json'
export { default as batlow } from './batlow.json'
export { default as bcgwhw_dark } from './bcgwhw_dark.json'
export { default as bcgwhw } from './bcgwhw.json'
expo... |
a14e0f4f859d24845a256a3a0d9f5f43b8bedeafcf7bcba21dbf8ff0814e264a | TypeScript | 3,838 | 194 | import { Actor } from "./actor";
import { TypeTaskType } from "./task";
import { Worker } from "./worker";
export type Job = {
jobId: string;
name: string;
owner: string;
language: string;
driverEntry: string;
state: string;
timestamp: number;
startTime: number;
endTime: number;
namespaceId: string... |
aa84186db9154c9ed47caf5ca59a91c6081dca8a93fbdc0ecc130e7817221e43 | TypeScript | 3,916 | 123 | import { describe, it, expect, beforeAll, afterAll } from 'vitest'
import { runCLI, EXIT_CODES } from '../helpers/cli-runner.js'
import fs from 'fs'
import path from 'path'
import os from 'os'
describe('CLI Pipeline Tests (stdin/stdout)', () => {
let tempDir: string
beforeAll(() => {
tempDir = fs.mkdtempSync(... |
e798a61c7aef1434a7d42ced85fe21f3e41778fc4ce85c4ef6f8ceff125c1ec9 | TypeScript | 3,952 | 144 | import { mat4 } from 'gl-matrix'
/**
* Represents an affine transformation in decomposed form.
*/
export interface AffineTransform {
translation: [number, number, number] // X, Y, Z in mm
rotation: [number, number, number] // Euler angles in degrees (X, Y, Z order)
scale: [number, number, number] // Scal... |
c5945575f1abd75158c22a35110feb1a88f38b18d3e5bea2d5bbcbf8716224a2 | TypeScript | 3,953 | 132 | /**
* Post-processing for brain segmentation: connected-component filtering.
*
* After inference, the label volume may contain small disconnected clusters
* (skull fragments, meninges) outside the main brain region. This module
* binarizes all nonzero labels, finds connected components of the binary mask,
* keeps... |
9177fb357f0847424b6e21244800d835e2bdd9658670bbd46374056c5afa3ff4 | TypeScript | 3,997 | 121 | // Copyright (C) 2022 Intel Corporation
// Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import { Config } from '@react-awesome-query-builder/antd';
import asyncFetchUsers from 'components/resource-sorting-filtering/request-users';
export const config: Partial<Config> = {
fields: {
... |
7ef6e45000687964ac90b592b855df28393a33c10bd17239ac6cbc1dcadea1d2 | TypeScript | 4,011 | 122 | // Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import { useDispatch, useSelector } from 'react-redux';
import { audioActions } from 'actions/audio-actions';
import { ActiveControl, CombinedState } from 'reducers';
import { registerComponentShortcuts } from 'actions/shortcuts-actions';
import ... |
95a734a2ffbe4b56a3735b8622219064f4d7264375b80d3ee7220da5b12fe8b3 | TypeScript | 4,059 | 108 | /**
* TensorProcessing module
*
* Handles diffusion tensor and vector field processing.
* This module contains functions for:
* - Converting vector fields to RGBA representation
* - Loading and processing V1 vector data with optional flips
*/
import type { NVImage } from './index'
import { log } from '@/logger'... |
04cbef812231e4ee0e13b1426e0ba82ef2dd0032c1bbd576173d412cb5203852 | TypeScript | 4,136 | 114 | import { describe, it, expect, beforeAll, afterAll } from 'vitest'
import { runCLI, EXIT_CODES } from '../helpers/cli-runner.js'
import fs from 'fs'
import path from 'path'
import os from 'os'
import { fileURLToPath } from 'url'
const __dirname = path.dirname(fileURLToPath(import.meta.url))
describe('CLI view subcomm... |
4e119ea8050eb45821494d6bd51cac5cfb89c51a671eb0e55f7cfa31a75c713f | TypeScript | 4,201 | 132 | /**
* @license
* Copyright 2026 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
3301413b01843041ee1544c9ab08b07d8b547665815846f18f55bfeeaedeee73 | TypeScript | 4,276 | 32 | export const orientCube = new Float32Array([
-1, -1, -1, 0.28, 0.28, 0.28, -1, -1, -1, 0.28, 0.28, 0.28, -1, 1, -1, 0.28, 0.28, 0.28, 1, -1, -1, 0.28, 0.28, 0.28, 1, 1, -1, 0.28, 0.28, 0.28, 1, 1, -1, 0.28, 0.28, 0.28, -1, -1, 1, 0.8, 0.8,
0.8, -1, -1, 1, 0.8, 0.8, 0.8, 1, -1, 1, 0.8, 0.8, 0.8, -1, 1, 1, 0.8, 0... |
310efe8b4201cecdea008f572c73e9b7136c0b8509ac5a8fbf8b3606fbde550a | TypeScript | 4,278 | 163 | import { UIKRenderer } from "./uikrenderer.js"
import { UIKFont } from "./assets/uikfont.js"
import { LineTerminator, LineStyle, Vec2 } from "./types.js"
import defaultFontPNG from "./fonts/Roboto-Regular.png"
import defaultFontJSON from "./fonts/Roboto-Regular.json" assert { type: "json" }
// Core UIKit exports
exp... |
6cb7472ffd3f9d97af384cbf23b9402b011060a8fdf185b84ad4ae9634e53aca | TypeScript | 4,328 | 120 | import { describe, it, expect } from 'vitest'
import { runCLI, EXIT_CODES } from '../helpers/cli-runner.js'
describe('CLI General Behavior', () => {
describe('Help output', () => {
it('should show general help with --help flag', async () => {
const result = await runCLI(['--help'])
expect(result.exi... |
45de3ba0d6b174559aedb31885a8dbb3dd6859c13de6e6ebb72a67ba1cd3c19a | TypeScript | 4,463 | 156 | import React, { useCallback, useContext, useEffect, useState } from "react";
export type MainNavPage = {
/**
* This gets shown in the breadcrumbs.
*/
title: string;
/**
* This gets shown as the HTML document page title. If this is not set, the title field will be used automatically.
*/
pageTitle?: ... |
6fdef031ffd967a75c69caf5e5b24553b506470e0cc356063da89aa19d6fc8f1 | TypeScript | 4,503 | 125 | /**
* @license
* Copyright 2026 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
84986fe572ec610eb997c18557428956cbc8be3a121b695d285951cd8fdf0402 | TypeScript | 4,505 | 128 | // Copyright (C) 2022 Intel Corporation
// Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import { Config } from '@react-awesome-query-builder/antd';
import asyncFetchUsers from 'components/resource-sorting-filtering/request-users';
export const config: Partial<Config> = {
fields: {
... |
2007212179a223867566c89828298c14668063e7be20c6acad825263fb3e449c | TypeScript | 4,525 | 111 | import { contextBridge, ipcRenderer, webFrame } from 'electron'
import { electronAPI } from '@electron-toolkit/preload'
import { join } from 'path'
import type { CLIOptions, ResolvedInput } from '../common/cliTypes.js'
const api = {
...electronAPI,
startTabDrag: (fileName: string, jsonStr: string): void => {
i... |
3c528a1d2671f71a82932100afb7eeb80492f59074a518346b6bae9b1fc31c0e | TypeScript | 4,527 | 172 | import { describe, it, expect, beforeAll, afterAll } from 'vitest'
import { runCLI, EXIT_CODES } from '../helpers/cli-runner.js'
import fs from 'fs'
import path from 'path'
import os from 'os'
import { fileURLToPath } from 'url'
const __dirname = path.dirname(fileURLToPath(import.meta.url))
describe('CLI niimath subc... |
d527b17770e6a33cdacdbbb885573710cd111ede2ec6703480f9ee70337e2b6a | TypeScript | 4,561 | 143 | /**
* StreamingLoader module
*
* Handles streaming HTTP fetching and data loading:
* - Streams and decompresses data from URLs
* - Handles paired image formats (HEAD/BRIK, HDR/IMG)
* - Manages chunked data assembly
*
* This module provides efficient streaming for large medical imaging files.
*/
import { uncom... |
93c18d7ce20f14d2aededacae50e3f24400fb65144171763a19484b5471f0fea | TypeScript | 4,613 | 167 | /**
* Label resolver utility for parsing label.json files and resolving
* label names to numeric values.
*/
/**
* A single label entry with value and name
*/
export interface LabelEntry {
value: number
name: string
}
/**
* Label index for fast lookups by name or value
*/
export interface LabelIndex {
/**... |
049a7d2d100239cd7888c71a42fd132b6093d238dcf91eaa92a79c06018b9673 | TypeScript | 4,632 | 135 | /**
* Volume modulation functions for handling modulation textures in volume rendering.
*/
import { NVImage, NiiDataType } from '@/nvimage'
import { Shader } from '@/shader'
import { log } from '@/logger'
/**
* Parameters for modulation setup
*/
export interface ModulationParams {
gl: WebGL2RenderingContext
... |
992fe17533447b3e88bbfeeb10de9e6b9f170a7887ec78d9203a0d82c09f7c95 | TypeScript | 4,645 | 127 | // src/ipcHandlers/registerAllIpcHandlers.ts
import React from 'react'
import { Niivue, NVImage, NVMesh } from '@niivue/niivue'
import { registerLoadStandardHandler } from './loadStandard.js'
import { registerLoadRecentFileHandler } from './loadRecentFiles.js'
import {
registerSliceTypeHandler,
registerLabelManager... |
5d255eb4e31c8b0b31cc270a0f753d966bccf3b74dd78ee9ed8ad3497a280038 | TypeScript | 4,769 | 119 | import { NIFTI1 } from 'nifti-reader-js'
import { log } from '@/logger'
import type { NVImage } from '@/nvimage'
import { NiiDataType } from '@/nvimage/utils'
/**
* Reads ECAT7 PET format image, modifying the provided NVImage header
* and returning the raw image data buffer.
* @param nvImage - The NVImage instance ... |
6cdbfa6c465c57ade44d2803a59a0f289c95f67f3fed2f318c3d792469d99e9c | TypeScript | 4,831 | 132 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test.describe('NiiVue Clip Plane', () => {
//... |
a0be5881615e536438263381ddb71b4f3c89f10577874c1cfd006954bdbe255c | TypeScript | 4,896 | 156 | /**
* @license
* Copyright 2026 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
514b956032c9bea4b61e75568dee530005082998e93f3ca27b82fc970f7747a9 | TypeScript | 4,937 | 151 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue mouse down updates onLocationChange'... |
e05d832a75dd920254c6826c0039b27148e182b8e47a1f099e0403a40f4ab231 | TypeScript | 5,015 | 102 | import * as fs from 'fs'
import * as path from 'path'
import { test, expect } from '@playwright/test'
import * as nifti from 'nifti-reader-js'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
function getFilesizeInBytes(filenam... |
abd96963dc9852020701199b9dd83250419cf545860d55089b9292e2718079c1 | TypeScript | 5,042 | 138 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('afni anat2temp', async ({ page }) => {
... |
66aba343ba8a983d44a046ece2dc9274b199aba44ee7dd339b18abf4a9cab3e5 | TypeScript | 5,188 | 149 | import path from 'path'
import { app } from 'electron'
import { spawn } from 'node:child_process'
import fs from 'node:fs'
import os from 'node:os'
import type { DicomSeries, ConvertSeriesOptions } from '../../common/dcm2niixTypes.js'
const isDev = !app.isPackaged
function platformFolder(): 'darwin' | 'linux' | 'win3... |
7c7a7716268d95b3e22f47be54ec50ba509e6fe74928ffd286f55caa14ac7ec3 | TypeScript | 5,196 | 163 | /**
* AffineProcessor module
*
* Handles affine matrix processing for NIfTI images:
* - Validates pixel dimensions
* - Calculates affine matrix from QForm quaternion parameters
* - Repairs defective affine matrices
* - Validates scale/intercept values
*
* The affine matrix defines the spatial transformation fr... |
20b27fa4c4d06db04bda2abccc8b76e1d5204538204741144280931661adfa3e | TypeScript | 5,258 | 181 | import { app } from 'electron'
import * as fs from 'fs'
import * as path from 'path'
import * as https from 'https'
import * as http from 'http'
import { readStdin } from './stdinReader.js'
import { type ResolvedInput, STANDARD_IMAGES } from '../../common/cliTypes.js'
const isDev = !app.isPackaged
/**
* Get the path... |
8fd721a961647b268c64b13f38493d8f4a2d5a4292dea6b66fab75107e61f6ea | TypeScript | 5,279 | 158 | import { mat4, vec3 } from 'gl-matrix'
import { NiivueObject3D } from '@/niivue-object3D'
import { getExtents } from '@/nvimage/utils'
import type { NVImage } from '@/nvimage'
/**
* Creates a NiivueObject3D representation for WebGL rendering from an NVImage.
* @param nvImage - The NVImage instance
* @param id - Uni... |
2201a2b8f2c855cc7c566caa536fefa731629efd9b67527db80998f882396a77 | TypeScript | 5,349 | 158 | import { NVImage } from '@niivue/niivue'
/**
* Defines the three possible slice orientations for viewing data
* Each orientation corresponds to a different anatomical plane and dimension in the volume
*/
export enum SliceOrientation {
AXIAL = 'axial', // Z axis, dims[3]
SAGITTAL = 'sagittal', // X axis, dims[1]... |
bc8a0df643a016850d630cd9cc1642c7dfafe1ce9dc4d3e54f0f67e18639af73 | TypeScript | 5,438 | 163 | // Copyright (C) 2019-2022 Intel Corporation
// Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import { SerializedUser } from './server-response-types';
import { UserModifiableFields } from './server-request-types';
import PluginRegistry from './plugins';
import { fieldsToSnakeCase } from './comm... |
06ead3b98dcf97cfc758699bd12c5e3129d6c8d2e30053ba36b4f183bb8fc62f | TypeScript | 5,514 | 173 | /**
* @license
* Copyright 2018 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
32f4647fb5521fce735ea6b3de084e040ed6e8c8492e8a4aa28a7e167bcbb855 | TypeScript | 5,602 | 157 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { NiivueTestOptions, TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
const defaultLayerOptions = {
... |
5fd33d0ee1496a64380934aca0dd1b8558c05fb017cb3825ca555e679f394456 | TypeScript | 5,709 | 182 | /**
* @license
* Copyright 2016 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
cef7ccb8b3fb9345a755cfb1eb3cb78e67b4d96f180530cfba47a3090742bab8 | TypeScript | 5,806 | 183 | import { app } from 'electron'
import { spawn } from 'child_process'
import { basename, extname, join, resolve } from 'path'
import fs from 'fs'
import os from 'os'
// DEV flag
const isDev = !app.isPackaged
/**
* Resolve the path to the bundled niimath binary for the current platform.
*/
export function getNiimathP... |
92295c3d6e9f1d8a06c0413052182917da83b1f17728af95d4bc8402da1d666d | TypeScript | 5,808 | 188 | // Copyright (C) 2021-2022 Intel Corporation
// Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import { numberArrayToPoints, type Point } from './math-utils';
export interface IntelligentScissorsParams {
shape: {
shapeType: 'polygon' | 'polyline';
};
canvas: {
shapeTy... |
011ff37c212752ee7e18397603ed29f83ddfc6508bc9d89607b39a0e33daeac2 | TypeScript | 5,809 | 144 | import type { NVImage, ImageFromUrlOptions } from '@/nvimage'
import type { NVMesh, LoadFromUrlParams } from '@/nvmesh'
import type { NVDocument, NVConfigOptions, CompletedMeasurement, CompletedAngle, SLICE_TYPE } from '@/nvdocument'
import type { DragReleaseParams, UIData } from '@/types'
/**
* Type-safe event map f... |
39b2464a5bf79a79d2fd506870e157bb01e2a4beee8cf7c443c94e03094e68c8 | TypeScript | 5,869 | 177 | import React from 'react'
import { Niivue, NVImage } from '@niivue/niivue'
import { brainchopService } from '../services/brainchop/index.js'
import type { SegmentationResult } from '../services/brainchop/types.js'
const electron = window.electron
export interface SegmentationHandlerProps {
nv: Niivue
setVolumes: ... |
0e2ab9963a2e801524df057b81fe4982695f62f289d9e422dcd0fe5dd156dbb4 | TypeScript | 5,942 | 164 | import { expect, test, describe } from 'vitest'
import { decodeRLE, encodeRLE } from '../../../src/drawing/rle'
describe('RLE (Run Length Encoding) functions', () => {
describe('decodeRLE', () => {
test('should decode a simple run', () => {
// RLE format: negative header (-count+1) followed by value
... |
57bb36d0d35096fb39241fa2bab47819d5aa79558cda192eb6d46ae109e8d3fc | TypeScript | 5,968 | 177 | import { Niivue } from '@niivue/niivue'
import { sliceTypeMap } from '../../../common/sliceTypes.js'
import { layouts } from '../../../common/layouts.js'
import { orientationLabelMap } from '../../../common/orientationLabels.js'
const electron = window.electron
export const registerSliceTypeHandler = (
nv: Niivue,
... |
e2ac017552d0e87d8647954d70aa1716bfa301dc6f4cabf56013ac94e804c0d4 | TypeScript | 6,075 | 138 | import { NIFTI1 } from 'nifti-reader-js'
import { log } from '@/logger'
import type { NVImage } from '@/nvimage'
import { NiiDataType } from '@/nvimage/utils'
/**
* Reads BrainVoyager V16 format image, modifying the provided NVImage header
* and returning the raw image data buffer.
* @param nvImage - The NVImage in... |
45110da8b32cf30723ff51007143701876497c211aa4471089e38ab654b57ac7 | TypeScript | 6,198 | 178 | /**
* Connectome management functions for handling connectome loading and label operations.
* This module provides pure functions for connectome data handling.
*/
import type { NVMesh } from '@/nvmesh'
import { MeshType } from '@/nvmesh'
import { NVConnectome, FreeSurferConnectome } from '@/nvconnectome'
import typ... |
134b9bc8b6835dd66c0f906f177a7f54b92110fd4ac42e54f51ff5b0db4277d1 | TypeScript | 6,218 | 175 | import * as process from 'node:process'
import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test.skip... |
b2ea38b90a567580a23156085d4a1e3519f398ee3e4dafa687e39979affedbce | TypeScript | 6,267 | 163 | import { NIFTI1 } from 'nifti-reader-js'
import { mat3, vec3 } from 'gl-matrix'
import { log } from '@/logger'
import type { NVImage } from '@/nvimage'
import { NiiDataType } from '@/nvimage/utils'
import { NVUtilities } from '@/nvutilities'
/**
* Reads ITK MetaImage format (MHA/MHD), modifying the provided NVImage h... |
5a9d92c88581efdf88316e257debc2dd8610f12c90ac60aac6422fbf9ce64b02 | TypeScript | 6,337 | 238 | import { describe, it, expect, beforeAll, afterAll } from 'vitest'
import { runCLI, EXIT_CODES } from '../helpers/cli-runner.js'
import fs from 'fs'
import path from 'path'
import os from 'os'
import { fileURLToPath } from 'url'
const __dirname = path.dirname(fileURLToPath(import.meta.url))
describe('CLI extract subc... |
58f1a2e7b3d7506e66200d80fe56286d4979f48acb5360b799f781a1b1cc3c0f | TypeScript | 6,404 | 284 | // Copyright (C) 2019-2022 Intel Corporation
// Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier = MIT
export enum ShareFileType {
DIR = 'DIR',
REG = 'REG',
}
export enum ChunkType {
IMAGESET = 'imageset',
VIDEO = 'video',
}
export enum TaskStatus {
ANNOTATION = 'annotation',
V... |
6d551d265213b281366ac961e96847fe7178044fc2371627445a22f6cc453a20 | TypeScript | 6,426 | 294 | import { vec3, vec4, mat4 } from 'gl-matrix'
import { NVLabel3D } from '@/nvlabel'
import { SLICE_TYPE, DRAG_MODE } from '@/nvdocument'
export type NiftiHeader = {
littleEndian: boolean
dim_info: number
dims: number[]
pixDims: number[]
intent_p1: number
intent_p2: number
intent_p3: number
... |
43450b535f0a5f358617e4f868fffa428ce668299d566b534db6e9d69a9fa09f | TypeScript | 6,501 | 187 | // Copyright (C) 2022 Intel Corporation
// Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import {
ActionUnion, createAction, ThunkAction, ThunkDispatch,
} from 'utils/redux';
import { getCore, Job, JobType } from 'cvat-core-wrapper';
import { JobsQuery } from 'reducers';
import { filterNull ... |
b4bc46938e67b2cee79087d7c50e2167cb57d7f4735840b88f844d11a5d2f0ce | TypeScript | 6,535 | 226 | // Copyright (C) 2019-2022 Intel Corporation
// Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import {
DrawData, MergeData, SplitData, GroupData, SelectData,
JoinData, SliceData, MasksEditData,
InteractionData as _InteractionData,
InteractionResult as _InteractionResult,
Canv... |
569f51417f966ba84846ee7e8bbff286d1a9e8bbd673f589eac592a5215fa7a9 | TypeScript | 6,606 | 186 | // @vitest-environment happy-dom
// The package entry (../src) registers a window 'load' listener at import
// time for the demo bootstrap, so a DOM environment is required to import it.
import {
UIKRenderer,
UIKFont,
UIKSlider,
UIKColormapSelector,
UIK_VERSION,
checkUIKitCompatibility,
MIN_TEXT_DEVICE_PX... |
c36bd6593f655bc6715ad39f5eebdd4207a3afcfde1bd4643205827c010a680b | TypeScript | 6,660 | 240 | /**
* Keyboard controller helper functions for keyboard event handling.
* This module provides pure functions for keyboard interaction logic.
*
* Related to: Keyboard event handling, hotkey processing, clip plane cycling
*/
import { DRAG_MODE, SLICE_TYPE } from '../../nvdocument.js'
/**
* Clip plane preset valu... |
be9ca1717d32f62637b4d68d1aec4933f2b195643c3b3dc4c69486f45a58d649 | TypeScript | 6,703 | 187 | import test, { expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue setIsOrientationTextVisible', async ... |
f2f20beee7e7a6afa99e1fe191361dc46f15df7800de4701a15027ba5057fb39 | TypeScript | 6,750 | 178 | /**
* CoordinateTransform Module
*
* Handles all coordinate system transformations for NVImage:
* - Voxel ↔ Millimeter conversions
* - Voxel ↔ Fractional texture coordinate conversions
* - Fractional ↔ Millimeter conversions
*
* This module provides pure functions for transforming between different
* coordinat... |
cb8ae29855f34a350acec107cf11fe5cbcdbd24df8c5211da62c4edd372867e6 | TypeScript | 6,751 | 205 | import { expect, test, vi, beforeAll } from 'vitest'
import { Niivue, PEN_TYPE, SLICE_TYPE } from '../../src/niivue/index.js' // note the js extension
import { calculateWindowingAdjustment } from '../../src/niivue/interaction/DragModeManager.js'
import { vec4 } from 'gl-matrix'
// Mock WebGL-dependent methods
beforeAl... |
7ce93eb7544a7e72eaeebb098abb710ca36e9264d4db5692736c37d3b5d86071 | TypeScript | 7,061 | 183 | // Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import {
Attribute, ObjectState, ObjectType, ShapeType,
} from 'cvat-core-wrapper';
import { isMacOS } from 'utils/platform-checker';
type MultiSelectModifier = 'shift' | 'ctrl' | 'alt' | 'meta';
type ModifierEvent = Pick<MouseEvent, 'shiftKe... |
687d9f872abcfbbee0746a71afb3e63c17e9bfa192997ae1c716f85d7157cb69 | TypeScript | 7,087 | 239 | // Copyright (C) 2022 Intel Corporation
//
// SPDX-License-Identifier: MIT
import _ from 'lodash';
import { AnyAction } from 'redux';
import { JobsActionTypes } from 'actions/jobs-actions';
import { SelectionActionsTypes } from 'actions/selection-actions';
import { JobsState, SelectedResourceType } from '.';
const de... |
caa463142a2f556f0e962e19588627b498157076d2c4a6b9408650a51c60dc55 | TypeScript | 7,162 | 184 | import { NIFTI1 } from 'nifti-reader-js'
import type { NVImage } from '@/nvimage'
import { NiiDataType } from '@/nvimage/utils'
import { NVUtilities } from '@/nvutilities'
/**
* Reads DSI Studio FIB format (fiber orientation data), modifying the provided
* NVImage header and returning the raw image data buffer and V... |
02a15bc4b09a314fb53946432f8719d6f1f5703b8fd97807a8aa0825f7e61bfc | TypeScript | 7,167 | 192 | import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
// Regression tests for https://github.com/niivue/niivue/pull/1565
// Single-panel 2D slice views should fill the entire canvas ra... |
4b11d069856ed79c5d0dd19dafbbeac476cfd1cd617d870db2099bcf02cc3a02 | TypeScript | 7,375 | 207 | /**
* ImageDataProcessor module
*
* Handles low-level image data processing:
* - Endian byte swapping for cross-platform compatibility
* - Data type conversion from NIfTI format codes to TypeScript typed arrays
*
* This module contains pure functions for transforming raw image data
* according to NIfTI header s... |
0434f3f35da5ce9d87d2e8043d3ee0bb69c94b4c50eaccd993aaf814d0b0d90e | TypeScript | 7,409 | 207 | /**
* @license
* Copyright 2025 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
b5527988a7720b2a87a0d4e1fa14a841e6240a16d78b2f2134c02a93e84f6fc5 | TypeScript | 7,484 | 231 | import * as tf from '@tensorflow/tfjs'
import type { NVImage } from '@niivue/niivue'
import type { PreprocessingResult } from './types.js'
/**
* Image preprocessing for brain segmentation models
* Handles volume harmonization, resampling, and intensity normalization
*/
export class ImagePreprocessor {
private tar... |
ee8d543c8ef2c765294e8243a4cb65af09622681473eb8a48c20f6f8b36d669e | TypeScript | 7,505 | 274 | /**
* Wheel controller helper functions for mouse wheel/trackpad event handling.
* This module provides pure functions for scroll wheel interaction logic.
*
* Related to: Mouse wheel scrolling, zooming, ROI resizing, segmentation threshold
*/
import { DRAG_MODE } from '../../nvdocument.js'
/**
* Parameters for ... |
6fd08aa8706ba3b44f4a7f200d340e1b22fe4750690183d04ed228c33027c06c | TypeScript | 7,627 | 255 | /**
* Drop handler utilities for drag-and-drop file loading.
*
* This module provides pure functions for handling drag-and-drop operations
* including URL drops, file system entries, and paired file detection.
*
* Related modules:
* - FileLoader.ts - File extension detection and format handling
* - EventControl... |
c5fc125c9ff44786b78e4dba2ba890c2530e9f7bc4aa4fb8f60fb50411093ad4 | TypeScript | 7,832 | 175 | // Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import { useLayoutEffect, useRef } from 'react';
import { VirtualItem, Virtualizer } from '@tanstack/react-virtual';
export type VirtualListKey = VirtualItem['key'];
export interface VirtualListScrollTarget {
key: VirtualListKey;
align?:... |
7521661e37adcbcee0de59271fb7e39c60c45618fbc42ff9fb01cf0af435ab59 | TypeScript | 7,854 | 252 | import { NiftiHeader } from '@/types'
/** Typed array types supported for voxel data */
export type TypedVoxelArray = Float32Array | Uint8Array | Int16Array | Float64Array | Uint16Array | Int32Array | Uint32Array
/**
* Options for creating a mask array
*/
export type MaskOptions = {
/** Total number of voxels *... |
79b1838654dc9767bb855fc8261631c9a20a10b56674fc37eb7819612e5c6574 | TypeScript | 7,921 | 290 | import { useState } from "react";
import useSWR from "swr";
import { API_REFRESH_INTERVAL_MS } from "../../../common/constants";
import { getServeApplications } from "../../../service/serve";
import { ServeSystemActorStatus } from "../../../type/serve";
import { ServeDetails } from "../ServeSystemDetails";
const SERVE... |
882a4651283fe0797a8fe28dfd2c6e188d097172ec725a52452678c300b9221a | TypeScript | 8,158 | 222 | import { NIFTI1 } from 'nifti-reader-js'
import type { NVImage } from '@/nvimage'
import { Zip } from '@/nvutilities'
/**
* Helper function to determine byte size per element from numpy dtype string.
* @param dtype - NumPy dtype string (e.g., '<f4', '<i2', '|b1')
* @returns Byte size of the data type
*/
function g... |
320ff5992c8cee435acf55943da0189fca38e77da8e662203c4ca267f58ca028 | TypeScript | 8,345 | 217 | /**
* @license
* Copyright 2020 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
a5f6d555c276ef92da1b92642dba8562921bfede5240eb49be98f455527a0de2 | TypeScript | 8,381 | 271 | /**
* @license
* Copyright 2026 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
7c367e40a28ae1ce8002729a40a2b440970e494bc2d8c28f26fad6e5c36ab942 | TypeScript | 8,386 | 230 | import * as fs from 'fs'
import { test, expect } from '@playwright/test'
import { Niivue } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { NiivueTestOptions, NiivueTestOptionsFilePath, TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(h... |
69073ffd5652b399454ecbc5b4d5a8fdbdcde07d11452149d5bd0f57dc94612a | TypeScript | 8,446 | 305 | /**
* Mesh management functions for handling mesh arrays and core mesh operations.
* This module provides pure functions for mesh array manipulation.
*/
import type { NVMesh, NVMeshLayer } from '@/nvmesh'
import type { ColorMap } from '@/colortables'
import type { LegacyConnectome } from '@/types'
import { log } fr... |
c26ecd824f82751971bfacacbe26856969493e15ad3f10102d8d18f74db84303 | TypeScript | 8,453 | 203 | /**
* Volume texture management functions for handling GPU textures and texture operations.
*/
import { NVImage, NiiDataType, NiiIntentCode } from '@/nvimage'
import { Shader } from '@/shader'
import { log } from '@/logger'
// Texture unit constants
const TEXTURE9_ORIENT = 33993
/**
* Prepare layer data by extrac... |
c397557ed4f61c472bba8062d83269b8fe108c9adf2ba72fd0664f632e5b497d | TypeScript | 8,589 | 292 | /**
* Volume management functions for handling volume arrays and core volume operations.
* This module provides pure functions for volume array manipulation.
*
* Related modules:
* - VolumeTexture.ts - Texture-related operations
* - VolumeColormap.ts - Colormap operations
* - VolumeModulation.ts - Modulation ope... |
288fa2e50427026e7a655f0af6271fc4ed1c7965b9bb2ac2bbe9947f73366679 | TypeScript | 8,619 | 239 | /**
* @license
* Copyright 2016 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
4f4ed0428564a48947ef329cb81e65019858d47e3c649ba23b4ca69ca07ed443 | TypeScript | 8,628 | 296 | // Copyright (C) 2020-2022 Intel Corporation
// Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import { PluginsActionTypes, PluginActions } from 'actions/plugins-actions';
import { PluginComponent, PluginsState } from '.';
const defaultState: PluginsState = {
fetching: false,
initialized... |
5987ece224f99b1f78845cbcff8dd3600a85e720741999d6e33de3f7ea4d5a06 | TypeScript | 8,702 | 268 | /**
* @license
* Copyright 2016 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
01177b3c59457a48e28ab0e9e3b63331a68a7036a8a42ceacf2ea65cc14efcad | TypeScript | 8,803 | 268 | import { test, expect } from '@playwright/test'
import { Niivue, Connectome, LegacyConnectome } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
await page.goto(httpServerAddress)
})
test('niivue load c... |
ea47e298bcb064a6b9ccdac56b27f089f63fb900daaf67b5c91df3e09ad863a7 | TypeScript | 9,276 | 289 | import * as cmaps from '@/cmaps'
import { log } from '@/logger'
export enum COLORMAP_TYPE {
MIN_TO_MAX = 0,
ZERO_TO_MAX_TRANSPARENT_BELOW_MIN = 1,
ZERO_TO_MAX_TRANSLUCENT_BELOW_MIN = 2
}
export type ColorMap = {
R: number[]
G: number[]
B: number[]
A: number[]
I: number[]
min?: num... |
4ef2b22e3da6eeb65d409f91e725bc9ce72c7613b18d94bd550cd548c5c0b6b8 | TypeScript | 9,334 | 298 | /**
* Event controller helper functions for canvas interaction management.
* This module provides pure functions for event handling and position calculations.
*
* Related to: Event registration, mouse position calculation, resize handling
*/
/**
* Mouse position relative to an element
*/
export interface Relati... |
c40ca1aa7a6a8f0e133de3b07e3ff56d8cef6770ec8982943721a4fdc78e83f1 | TypeScript | 9,337 | 294 | /**
* Clip plane manager helper functions for 3D clipping plane operations.
* This module provides pure functions for clip plane calculations and management.
*
*/
import { sph2cartDeg } from '../rendering/VolumeRenderer.js'
/**
* Default clip plane values when no clipping is active.
* The depth value of 2 effec... |
cdad843b669a79429ea0061615d4764965ba12da0bb7a1c6b4d44977389dd81a | TypeScript | 9,524 | 239 | import { UIKRenderer } from '../uikrenderer.js'
import { UIKFont } from '../assets/uikfont.js'
import { Vec4, Color } from '../types.js'
export interface UIKViewModeSelectorOptions {
bounds: Vec4
selectedMode: string
modes: string[]
font: UIKFont
onModeChange: (mode: string) => void
style?: {
... |
b1e2aa5e47803bdd2d1489e9b4f47d481dfffd5a26766ee3843b50d6885a95e2 | TypeScript | 9,526 | 298 | /**
* Shape drawing tool pure functions for rectangle and ellipse drawing operations.
*
* This module provides pure functions for geometric shape drawing including
* rectangles and ellipses (3D ellipsoids).
*
* Related modules:
* - DrawingManager.ts - Drawing state management and undo/redo
* - PenTool.ts - Pen ... |
8d593ed5bd0f6631a6e3d1a2b3c20102abd292a45d4881d20ba30f555ef97a5e | TypeScript | 9,592 | 276 | import { test, expect } from '@playwright/test'
import { Niivue, NVConfigOptions } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
type OptsChange = {
property: keyof NVConfigOptions
newValue: NVConfigOptions[keyof NVConfigOptions]
... |
c9db1ce37a7d551e44fd251576b8535610f624a4439ef567a015f1b9d1c12f6b | TypeScript | 9,683 | 280 | /**
* IntensityCalibration module
*
* Handles intensity calibration, windowing, and histogram analysis.
* This module contains functions for:
* - Calculating robust intensity range (2%..98% percentile)
* - Converting between raw and calibrated intensity values
*/
import type { NVImage } from './index'
import { ... |
8cd2825d1b5243c38b4f42ddca70ac0d40e93b4ff47ab46965bb047ddaf6cfa6 | TypeScript | 9,698 | 324 | /**
* File loading and format detection utilities for Niivue.
* This module provides pure functions for file extension handling,
* format detection, custom loaders, and media URL management.
*/
import type { NVImage } from '@/nvimage'
import type { NVMesh } from '@/nvmesh'
import { log } from '@/logger'
/**
* DI... |
ea66ddd1b49dba910647847dc85864e54be1d3f3b204014af03be3b914877b51 | TypeScript | 9,704 | 282 | /**
* @license
* Copyright 2017 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
2a73505328ae2657b0ca60f16e730384bc5ae5bd5451c1396465213dc8cdd728 | TypeScript | 9,740 | 326 | import * as tf from '@tensorflow/tfjs'
import { NVImage } from '@niivue/niivue'
import { modelManager, ModelManager } from './ModelManager.js'
import { inferenceEngine, InferenceEngine } from './InferenceEngine.js'
import type {
ModelInfo,
SegmentationOptions,
SegmentationResult,
BrainchopServiceState
} from '.... |
c2c704b39dc1b5691d4efb58c2fa83c57a9242e39b8c2dd6734688ced3f7ec5a | TypeScript | 9,989 | 260 | import { NIFTI1, NIFTIEXTENSION } from 'nifti-reader-js'
import { mat4, vec3, vec4 } from 'gl-matrix'
import { log } from '@/logger'
import type { NVImage } from '@/nvimage'
import { NiiDataType } from '@/nvimage/utils'
import { NVUtilities } from '@/nvutilities'
/**
* Helper function to convert voxel location (row, ... |
fbf495e669cf031701a355791352a6bf134d7954545dc067453fbd86161f3e08 | TypeScript | 10,261 | 291 | // Copyright (C) CVAT.ai Corporation
//
// SPDX-License-Identifier: MIT
import {
AnalyticsEventsFilter, QualityConflictsFilter, QualityReportsFilter,
QualitySettingsFilter, QualityRequirementsFilter, ConsensusSettingsFilter, ApiTokensFilter,
} from './server-request-types';
import PluginRegistry from './plugin... |
dc08841ce261092f77a7dcffc0e38ac6dd1b5fd0cea12f635d28723d77151110 | TypeScript | 10,312 | 382 | import {
JobProgressGroup,
StateApiJobProgressByTaskName,
StateApiNestedJobProgress,
TaskProgress,
} from "../../../type/job";
import { TypeTaskStatus, TypeTaskType } from "../../../type/task";
import {
formatNestedJobProgressToJobProgressGroup,
formatSummaryToTaskProgress,
} from "./useJobProgress";
descr... |
3e825b2f342d78bec4c5c8c6edc672a8959f7bb9d1e7c6f02b91ddc9bb7d55a2 | TypeScript | 10,384 | 339 | import _ from "lodash";
import { useState } from "react";
import useSWR from "swr";
import { API_REFRESH_INTERVAL_MS } from "../../../common/constants";
import { sliceToPage } from "../../../common/util";
import {
getStateApiJobProgressByLineage,
getStateApiJobProgressByTaskName,
} from "../../../service/job";
impo... |
23c01cef5440e33f1142a58ef816295d9f4688b550845e2bbabf1b13d50ecd08 | TypeScript | 10,808 | 341 | import { test, expect } from '@playwright/test'
import { Niivue, LabelTextAlignment, LabelLineTerminator, LabelAnchorPoint } from '../../dist/index.js'
import { httpServerAddress } from './helpers.js'
import { TEST_OPTIONS } from './test.types.js'
test.beforeEach(async ({ page }) => {
// Uncomment for trouble shoo... |
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