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import assert from 'assert/strict'; import { MeshoptClusterizer as clusterizer } from './meshopt_clusterizer.js'; process.on('unhandledRejection', (error) => { console.log('unhandledRejection', error); process.exit(1); }); const cubeWithNormals = { vertices: new Float32Array([ // n = (0, 0, 1) -1.0, -1.0, 1.0,...
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const express = require('express'); const multer = require('multer'); const path = require('path'); const { promisify } = require('util'); const mkdirp = promisify(require('mkdirp')); const fs = require('fs'); const pify = require('util').promisify; const rmrf = pify(require('rimraf')); const { extractTar } = require('...
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/** * A helper class that manages a pool of objects with animatable states, such as * decorations. */ /** * A pool of objects with animatable states. You manage the appearance of * objects by calling show() and hide(). The animation pool keeps track of * objects that are in the process of being animated in and o...
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/* eslint-disable camelcase */ const axios = require('axios'); const fs = require('fs'); const { parse } = require('csv-parse/sync'); // eslint-disable-line const path = require('path'); const winston = require('winston'); const config = require('./config'); const logger = winston.createLogger({ level: 'info', tra...
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// dynamic landmark-point identity for the Facial Anthropometrics workspace - // unlike the Patients workspace's fixed 3-4 named landmarks (lib/landmarks.js's // LANDMARK_NAMES), a measurement here can reference any number of arbitrary // points, so identity has to be generated, not a constant list. // the highest "pN...
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// This optional code is used to register a service worker. // register() is not called by default. // This lets the app load faster on subsequent visits in production, and gives // it offline capabilities. However, it also means that developers (and users) // will only see deployed updates on subsequent visits to a p...
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// plain-language "what is this and how is it derived" text for the hover // (?) icons next to each measurement/graph in the Analysis workspace - see // components/InfoTooltip.jsx. mirrors the wording of api/results_bundle.py's // own METRIC_EXPLAINERS (the PDF report's equivalent) where the same metric // exists there...
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// a small, deliberately constrained arithmetic expression parser/evaluator // for the "Custom metrics" tab - numbers, + - * / ( ), and column-name // identifiers only. NOT eval()/new Function(), even though this is a local // desktop tool: a formula box is exactly the kind of input that eventually // gets pasted-from-...
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const path = require('path'); const axios = require('axios'); const PipelineManager = require('coinstac-pipeline'); const { pullImagesFromList, removeImagesFromList } = require('coinstac-container-manager'); const Managers = {}; async function getDockerManager(clientId) { if (Managers[clientId]) { return Manage...
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/* * Smallest enclosing circle - Library (compiled from TypeScript) * * Copyright (c) 2020 Project Nayuki * https://www.nayuki.io/page/smallest-enclosing-circle * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as published by ...
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// Script to check that minimum requirements for participation in the study are met const REQUIREMENTS_MIN_SCREEN_WIDTH = 800; // in css pixels const REQUIREMENTS_MIN_SCREEN_HEIGHT = 768; // in css pixels const RETURN_PROLIFIC_SUBMISSION_MESSAGE = "return your submission on Prolific by clicking the 'stop without comp...
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Search.setIndex({"docnames": ["index"], "filenames": ["index.rst"], "titles": ["Welcome to pyComBat\u2019s documentation!"], "terms": {"thi": 0, "packag": 0, "i": 0, "now": 0, "deprec": 0, "longer": 0, "maintain": 0, "its": 0, "standalon": 0, "version": 0, "It": 0, "ha": 0, "been": 0, "merg": 0, "inmoos": 0, "pleas": 0...
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const { eventEmitter, COMPUTATION_CHANGED, COMPUTATION_DELETED, CONSORTIUM_CHANGED, CONSORTIUM_DELETED, CONSORTIUM_PIPELINE_CHANGED, PIPELINE_CHANGED, PIPELINE_DELETED, RUN_CHANGED, RUN_DELETED, RUN_STARTED, RUN_WITH_HEADLESS_CLIENT_STARTED, THREAD_CHANGED, USER_CHANGED, USER_CONNECTION_CH...
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/* eslint-disable-next-line import/no-unresolved */ const test = require('ava'); const sinon = require('sinon'); const find = require('lodash/find'); const routes = require('../src/routes'); const authRoutes = require('../src/routes/auth'); const versionRoutes = require('../src/routes/version'); const helperFunctions =...
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import { ipcRenderer } from 'electron'; import { persistReducer } from 'redux-persist'; import { pipelineNeedsDataMapping } from '../../utils/helpers'; import { storage } from '../storage'; import { saveLocalRunResult } from './localRunResults'; import { notifyError, notifyInfo } from './notifyAndLog'; /** * We curr...
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// Copyright 2011-2012 The MathWorks, Inc. function RTW_STRUCT(prop, value) { this.prop = prop; if (typeof(value) == 'undefined') this.value = ""; else this.value = value; } // initialize the cache when code generation report is first loaded function RTW_BOOK() { this.length = 0; ...
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'use strict'; /* eslint-disable-next-line import/no-unresolved */ const test = require('ava'); const sinon = require('sinon'); const csvParse = require('csv-parse'); const fsPromise = require('fs').promises; const fs = require('fs'); const PipelineManager = require('coinstac-pipeline'); const { CORE_CONFIGURATION, ME...
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// // Animation and Event objects // EVENT_TYPE_INSTANTANEOUS = "instantaneous" EVENT_TYPE_EXTENDED = "extended" class Animation { constructor(duration, eventSequences) { this.duration = duration; this.eventSequences = eventSequences; } } class Event { constructor(startTime, type) { this.startTime...
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(function($) { 'use strict'; var SelectBox = { cache: {}, init: function(id) { var box = document.getElementById(id); var node; SelectBox.cache[id] = []; var cache = SelectBox.cache[id]; var boxOptions = box.options; var box...
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var $jscomp={scope:{},findInternal:function(b,c,a){b instanceof String&&(b=String(b));for(var d=b.length,e=0;e<d;e++){var f=b[e];if(c.call(a,f,e,b))return{i:e,v:f}}return{i:-1,v:void 0}}};$jscomp.defineProperty="function"==typeof Object.defineProperties?Object.defineProperty:function(b,c,a){if(a.get||a.set)throw new Ty...
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export function scaleCanvas(c, w, h) { // Scales the canvas for the device screen resolution var result = c .attr('width', w * window.devicePixelRatio) .attr('height', h * window.devicePixelRatio) .style('width', w + 'px') .style('height', h + 'px'); var context = c.node().getContext('2d'); con...
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// fetch wrappers for the /api/facial/* endpoints - same shape/conventions // as api/cohort.js/api/sessions.js, including converting the backend's // snake_case JSON into the camelCase shape every other wrapper in this app // already hands back (see api/sessions.js's uploadSession for the same // pattern). the actual g...
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// the metric catalog for the Trends tab's "measurements over time" chart - // every scalar field group_measurements_response (api/routers/ // _group_measurements.py) can carry, grouped the same way AnalysisPanel.jsx // groups its own tables (cranial measurements / frontal bossing+asymmetry / // metopic forehead shape)...
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var searchData= [ ['gaussp',['gaussp',['../namespacelib.html#a8589227f165a9e24a63979440f76f6a5',1,'lib']]], ['get_5f2dproj',['get_2dproj',['../namespaceanalyze__ocn.html#a4dd430609340d8f04081b0aba12d7862',1,'analyze_ocn']]], ['get_5fcell_5fstats',['get_cell_stats',['../classtinacell_1_1Cell.html#abedf6a75383186ae...
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// Mathieu Jacomy @ Sciences Po Médialab & WebAtlas // (requires sigma.js to be loaded) sigma.publicPrototype.parseGexf = function(gexfPath,callback) { // Load XML file: var gexfhttp, gexf; var sigmaInstance = this; gexfhttp = window.XMLHttpRequest ? new XMLHttpRequest() : new ActiveXObject('Microsoft.X...
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import assert from 'assert/strict'; import { MeshoptSimplifier as simplifier } from './meshopt_simplifier.js'; process.on('unhandledRejection', (error) => { console.log('unhandledRejection', error); process.exit(1); }); var tests = { compactMesh: function () { var indices = new Uint32Array([0, 1, 3, 3, 1, 5]); ...
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import db from '@server/config/db.js' import { Op } from 'sequelize' import { intersection, union } from 'lodash' import cellType from './cellType' import dataSet from './dataset' // the schema directory can only access from ../../ const deSchema = '../../schema/scread_v1/de.js' const deMetaSchema = '../../schema/scre...
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import * as THREE from "three"; // plain vertex-average centroid across all mesh children - not the // slice-based center-of-mass the backend uses for craniometrics, just a // straightforward "middle of all the points" for visually comparing two // whole meshes. ported from frontend_legacy/app.js's computeCentroid. fu...
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// Mathieu Jacomy @ Sciences Po Médialab & WebAtlas // (requires sigma.js to be loaded) sigma.publicPrototype.parseGexf = function(gexfPath) { // Load XML file: var gexfhttp, gexf; var sigmaInstance = this; gexfhttp = window.XMLHttpRequest ? new XMLHttpRequest() : new ActiveXObject('Microsoft.XMLHTTP');...
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const { ObjectID } = require('mongodb'); const { v4: uuid } = require('uuid'); const database = require('../../database'); const helperFunctions = require('../../auth-helpers'); const { eventEmitter, USER_CHANGED, HEADLESS_CLIENT_CHANGED, HEADLESS_CLIENT_DELETED, } = require('../events'); const { NotAuthorized...
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var searchData= [ ['gaussp',['gaussp',['../namespacelib.html#a8589227f165a9e24a63979440f76f6a5',1,'lib']]], ['get_5f2dproj',['get_2dproj',['../namespaceanalyze__ocn.html#a4dd430609340d8f04081b0aba12d7862',1,'analyze_ocn']]], ['get_5fcell_5fstats',['get_cell_stats',['../classtinacell_1_1Cell.html#abedf6a75383186ae...
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const formidable = require('formidable') const fs = require('fs-extra') const sendmail = require('sendmail')() const sendEmail = function(ctx) { const email = ctx.content.fields.email || '' const controlFile = function(ctx) { if (ctx.content.fields.atlasType === 'custom') { return ctx.content.files.contr...
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/*global gettext, interpolate, ngettext*/ (function($) { 'use strict'; var lastChecked; $.fn.actions = function(opts) { var options = $.extend({}, $.fn.actions.defaults, opts); var actionCheckboxes = $(this); var list_editable_changed = false; var showQuestion = function() {...
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/* eslint-disable no-console */ const PipelineManager = require('coinstac-pipeline'); const path = require('path'); const axios = require('axios'); const chalk = require('chalk'); const graphqlSchema = require('coinstac-graphql-schema'); const { pullImagesFromList } = require('coinstac-container-manager'); const manag...
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const ALL_IMAGES = [ { Containers: -1, Created: 1587498811, Id: 'sha256:0754fbc398a7ecfbae1061b6a9115f0228ef39171457692a6ff12bfbf5ddef39', Labels: { maintainer: 'Dirk Eddelbuettel <edd@debian.org>', 'org.label-schema.license': 'GPL-2.0', 'org.label-schema.vcs-url': 'https://github.co...
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// resamples and lerps the measurements/metopic/frontal-bossing overlay // geometry between two timepoints - see three/resamplePolyline.js's own // comment for why resampling has to happen first (craniumpy_core's own // slice/contour/profile point arrays are variable-length per mesh, no // shared per-index meaning acro...
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/*global SelectBox, interpolate*/ // Handles related-objects functionality: lookup link for raw_id_fields // and Add Another links. (function($) { 'use strict'; // IE doesn't accept periods or dashes in the window name, but the element IDs // we use to generate popup window names may contain them, therefo...
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const ADA_POS = "ada-pos"; const ADA_PROB = "ada-prob"; const ADA_POS_PROB = "ada-pos-prob"; const ADA_PROB_POS = "ada-prob-pos"; const ADA_POS_DEFAULT_STUDY_PARAMS = { studyName: ADA_POS, estimatedCompletionTime: 28, // in minutes baseMoney: 4.20, // in pounds maxMoneyBonus: 2.10, // in pounds maxMoneyBonus...
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/* eslint-disable no-console */ const { EXIST_TIMEOUT, COMPUTATION_TIMEOUT, COMPUTATION_DOWNLOAD_TIMEOUT } = require('../lib/constants'); const createConsortium = async ({ name, description }, app) => { // Go to create consortium page await app.click('a:has-text("Consortia")'); await app.click('a[name="create-c...
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// fetch wrappers for the /api/longitudinal/* endpoints - same shape/ // conventions as api/sessions.js and api/cohort.js. everything else the // Longitudinal workspace needs (per-timepoint upload/align/clip/run, and // NICP-fitting a mesh to a shared template) is already covered by // api/sessions.js - every mesh this...
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// Shared Ada-Prob/Ada-Pos functions function getScoreFracFromSessionData(sessionData) { const isAdaProb = (sessionData.taskName == ADA_PROB_TASK_NAME_DASH_CASE); let trueValue = isAdaProb ? sessionData.p1 : sessionData.mean; let estimate = sessionData.estimate; let idealObserverEstimate = isAdaProb ? sessionD...
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const { makeExecutableSchema } = require('apollo-server-hapi'); const { pubsub, resolvers } = require('./resolvers'); const sharedFields = require('./shared-fields'); const typeDefs = ` scalar JSON type ComputationMeta { ${sharedFields.computationMetaFields} } input ComputationMetaInput { ${sharedFie...
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// Core javascript helper functions // basic browser identification & version var isOpera = (navigator.userAgent.indexOf("Opera") >= 0) && parseFloat(navigator.appVersion); var isIE = ((document.all) && (!isOpera)) && parseFloat(navigator.appVersion.split("MSIE ")[1].split(";")[0]); // quickElement(tagType, parentRef...
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const Docker = require('dockerode'); const _ = require('lodash'); const http = require('http'); const path = require('path'); const os = require('os'); const { execSync } = require('child_process'); const utils = require('../utils'); const { ServiceFunctionGenerator } = require('./serviceFunction'); let docker; funct...
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// true once pywebview has finished injecting its bridge and attaching // pick_file - checking the object's truthiness instead would report // "desktop" during the gap right after injection starts but before // pick_file actually exists, then fail calling something not there yet. // ported from frontend_legacy/app.js's...
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Search.setIndex({"docnames": ["index", "source/modules", "source/stt", "source/stt.pl", "source/stt.tl"], "filenames": ["index.rst", "source/modules.rst", "source/stt.rst", "source/stt.pl.rst", "source/stt.tl.rst"], "titles": ["Welcome to STT\u2019s documentation!", "stt", "STT package Documentation", "stt.pl submodule...
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'use strict'; const fs = require('fs'); const pify = require('util').promisify; const Emitter = require('events'); const { join, dirname, relative, sep, } = require('path'); const mkdirp = pify(require('mkdirp')); const rmrf = pify(require('rimraf')); const Controller = require('./controller'); const { link ...
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// // Run loop // const SOA = 1500; // ms const ISI = 200; // ms const TIME_BETWEEN_SESSION_START_AND_FIRST_TRIAL = 1000; // ms const LOOP_STATE_READY = 1; const LOOP_STATE_STARTING = 2; const LOOP_STATE_RUNNING = 3; const LOOP_STATE_PAUSED = 4; const LOOP_STATE_STOPPING = 5; const LOOP_STATE_STOPPED_READY_NEXT = 6; ...
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/* eslint-disable-next-line import/no-unresolved */ const test = require('ava'); const sinon = require('sinon'); const portscanner = require('portscanner'); const winston = require('winston'); const wsServer = require('../../coinstac-images/coinstac-base/server-ws2'); const mocks = require('../helpers/mocks'); const Ma...
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/** * A doubly linked list-based Least Recently Used (LRU) cache. Will keep most * recently used items while discarding least recently used items when its limit * is reached. * * Licensed under MIT. Copyright (c) 2010 Rasmus Andersson <http://hunch.se/> * See README.md for details. * * Illustration of the desig...
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// // Utility functions // SOFTPLUS_DEFAULT_SHARPNESS = 5; function getFractionalValue(v, vA, vB, vAFrac = 0, vBFrac = 1, clipped = true, do_softplus = true, softplus_sharpness = SOFTPLUS_DEFAULT_SHARPNESS) { let slope = (vB - vA) / (vBFrac - vAFrac); let intercept = vA - slope * vAFrac; let vFrac = (v - in...
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import * as PIXI from 'pixi.js'; import * as d3 from 'd3'; function _rgbStringToArray(rgb) { let comps = rgb.substring(4, rgb.length - 1).split(','); return [ parseInt(comps[0]) / 255.0, parseInt(comps[1]) / 255.0, parseInt(comps[2]) / 255.0, ]; } /** * A PIXI Geometry object that holds attributes ...
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import { interpolateTo, Decoration, Animator, easeInOut, } from './data_items.js'; import { circumscribeCircle } from '../utils/enclosing_circle.js'; import { getWithFallback } from '../utils/helpers'; // Defines the visual decoration appearance of a star graph export function DecorationStarGraph( centerMark...
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import update from 'immutability-helper'; import { filter, get, keys } from 'lodash'; import { FETCH_ALL_CONSORTIA_QUERY, } from './functions'; export const compIOProp = { props: ({ data: { fetchComputation } }) => ({ compIO: fetchComputation ? fetchComputation[0] : null, }), options: ({ computationId }) ...
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// This file is part of gltfpack and is distributed under the terms of MIT License. /** * Initialize the library with the Wasm module (library.wasm) * * @param wasm Promise with contents of library.wasm * * Note: this is called automatically in node.js */ function init(wasm) { if (ready) { throw new Error('in...
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// client-side descriptive stats + binning for the Cohort workspace - fast // and interactive (no round trip per filter/stratify tweak), unlike the // *inferential* tests (t-test/ANOVA/etc.), which stay server-side via // api/cohort.js's runStatsTest (scipy.stats - accurate p-values are easy to // get subtly wrong hand...
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import * as THREE from "three"; export function loadGlb(gltfLoader, url) { return new Promise((resolve, reject) => { gltfLoader.load(url, (gltf) => resolve(gltf.scene), undefined, reject); }); } export function plainMaterial() { return new THREE.MeshStandardMaterial({ color: 0xe8d9c0, side: THREE.DoubleSide...
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// resamples a polyline (an array of {x,y,z} or {x,z} points, in order) to // exactly N evenly-arc-length-spaced points - used by the 3D Morphing tab // to make two timepoints' own overlay geometry lerp-able frame by frame. // craniumpy_core's own measurement geometry (hc_slice_polygon, the metopic // contour, the fron...
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import assert from 'assert/strict'; import { MeshoptEncoder as encoder } from './meshopt_encoder.js'; import { MeshoptDecoder as decoder } from './meshopt_decoder.mjs'; process.on('unhandledRejection', (error) => { console.log('unhandledRejection', error); process.exit(1); }); function bytes(view) { return new Uin...
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var NAVTREEINDEX0 = { "annotated.html":[0,0], "classes.html":[0,1], "dir_68267d1309a1af8e8297ef4c3efbcdba.html":[1,0,0], "files.html":[1,0], "fitch_8h_source.html":[1,0,0,0], "globals.html":[1,1,0], "globals_enum.html":[1,1,2], "globals_eval.html":[1,1,3], "globals_func.html":[1,1,1], "index.html":[], "morphy_8h_source...
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const stream = require('stream'); const { spawn, execFile, spawnSync } = require('child_process'); const path = require('path'); const { readdir, rm } = require('fs').promises; const utils = require('../utils'); const { ServiceFunctionGenerator } = require('./serviceFunction'); /** * returns an instance of the singul...
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import * as THREE from "three"; // blue (dented, negative) - white (0) - red (protruded, positive) diverging // scale, matching results_bundle.py's _asymmetry_figure ("bwr" colormap) so // the live viewer and the saved figure read the same way. gamma <1 on the // normalized magnitude pushes moderate deviations toward ...
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/*global XRegExp*/ (function() { 'use strict'; var LATIN_MAP = { 'À': 'A', 'Á': 'A', 'Â': 'A', 'Ã': 'A', 'Ä': 'A', 'Å': 'A', 'Æ': 'AE', 'Ç': 'C', 'È': 'E', 'É': 'E', 'Ê': 'E', 'Ë': 'E', 'Ì': 'I', 'Í': 'I', 'Î': 'I', 'Ï': 'I', 'Ð': 'D', 'Ñ': 'N', 'Ò': 'O', 'Ó': 'O', 'Ô': 'O', 'Õ'...
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const WS = require('ws'); const utils = require('../utils'); /** * Calls the WS server inside the container * with data format: * [{command}, {args}, {inputData}] * @param {Array} data service data to run * @return {Promise} resolves or rejects from service run */ const ServiceFunctionGenerator = ({ host...