sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
ef6ce0da198a4f176c93f53c89caf705d1a85feb7f0bf50175cf25131bac3c3b | MATLAB | 200,000 | 3,129 | %-----------------------------------------------------------------------
% Job PART 2
% spm SPM - SPM12 (7771)
% cfg_basicio BasicIO - Unknown
%-----------------------------------------------------------------------
%%
matlabbatch{1}.spm.tools.dartel.warp.images = {
{
'/da... |
000cf8507456906aac11e47696c89d29345d91bebf0b4f0c30078cbd3781bcc9 | MATLAB | 200,001 | 3,902 | function varargout = randraw(distribName, distribParams, varargin)
%
% EFFICIENT RANDOM VARIATES GENERATOR
%
% See alphabetical list of the supported distributions below (over 50 distributions)
%
% 1) randraw
% presents general help.
% 2) randraw( distribName )
% presents help for the specif... |
025368f03abf6f7972a76e22e00c11dd0ed4cddfcf662a7b3c0c75060f0658bc | MATLAB | 203,393 | 4,277 | function varargout = WheelAnalyzer24chSpike(varargin)
% WHEELANALYZER M-file for WheelAnalyzer.fig
% WHEELANALYZER, by itself, creates a new WHEELANALYZER or raises the existing
% singleton*.
%
% H = WHEELANALYZER returns the handle to a new WHEELANALYZER or the handle to
% the existing single... |
711dd1f1260876837bdeadfc7b0957992e7cf8faa42185f033c94e9af7366e06 | MATLAB | 203,580 | 4,296 | function varargout = WheelAnalyzer24chSpike(varargin)
% WHEELANALYZER M-file for WheelAnalyzer.fig
% WHEELANALYZER, by itself, creates a new WHEELANALYZER or raises the existing
% singleton*.
%
% H = WHEELANALYZER returns the handle to a new WHEELANALYZER or the handle to
% the existing single... |
fe2431fbd9c2496473e218b1394aa6acd493f5647d8ac660ee12f1a8c8bb33d1 | MATLAB | 203,895 | 4,355 | function varargout = WheelAnalyzer24chSpike(varargin)
% WHEELANALYZER M-file for WheelAnalyzer.fig
% WHEELANALYZER, by itself, creates a new WHEELANALYZER or raises the existing
% singleton*.
%
% H = WHEELANALYZER returns the handle to a new WHEELANALYZER or the handle to
% the existing single... |
ed54aca4707637101b3a3d1b28c9ce11061f99b12e807209d4ab3b6f3f22cf19 | MATLAB | 204,158 | 4,333 | function varargout = WheelAnalyzer24chSpike(varargin)
% WHEELANALYZER M-file for WheelAnalyzer.fig
% WHEELANALYZER, by itself, creates a new WHEELANALYZER or raises the existing
% singleton*.
%
% H = WHEELANALYZER returns the handle to a new WHEELANALYZER or the handle to
% the existing single... |
df9b46fc6a1ffcd0612371c327be8cb318d7e8ad53f6cff685b640f2fb85c3bd | MATLAB | 204,282 | 4,303 | function varargout = WheelAnalyzer24chSpike(varargin)
% WHEELANALYZER M-file for WheelAnalyzer.fig
% WHEELANALYZER, by itself, creates a new WHEELANALYZER or raises the existing
% singleton*.
%
% H = WHEELANALYZER returns the handle to a new WHEELANALYZER or the handle to
% the existing single... |
3ce410bce51e445cf24f1a80a8d7ec2cdd0b4af46f21c344c347dc0bd098ecab | MATLAB | 204,353 | 4,339 | function varargout = WheelAnalyzer24chSpike(varargin)
% WHEELANALYZER M-file for WheelAnalyzer.fig
% WHEELANALYZER, by itself, creates a new WHEELANALYZER or raises the existing
% singleton*.
%
% H = WHEELANALYZER returns the handle to a new WHEELANALYZER or the handle to
% the existing single... |
90a04306faed52ed93615143c906488e8abde0f104f64f0011c2f37ce5017792 | MATLAB | 205,280 | 3,287 | function Repeat5touchLtRt
global CCresultRtouchWon CCresultLtouchWon RpegTouchallWon LpegTouchallWon SpikeArrayWon tfile pegpatternname trimFolder2 pegpatternum TouchCountW12345 SpikeFR_5Touch_Bin RLRLRcount LRLRLcount...
Spike1FR_5Touch_Bin Spike2FR_5Touch_Bin Spike3FR_5Touch_Bin Spike4FR_5Touch_Bin tTouchCount1... |
00491f2c030211a14e6950e0497918d208ee43e49c1b57c8aa8c81927cd48c43 | NEURON | 23 | 2 | load_file("fig6.hoc")
|
c76338d3e64e523dd8f708415c096c759d322c9eff4e10d381eac902041bf8bc | NEURON | 43 | 2 | load_file("_Testing/init_SimManager.hoc")
|
4cb151095251ba11a3bcefba4c41c18fe239c8be36b5306d25a5b5bf1a985359 | NEURON | 53 | 2 | load_file("_Testing/init_InsideOutDiffManager.hoc")
|
5d9b26b536b2721eb15780bfeb5ee6e2b59597e484a1d20770f5629e97adbc13 | NEURON | 106 | 6 |
func myDistFunc() { local x, y
x = $1
y = x/10 + 50*sin(2*PI*x/200) * tanh(x/100)
return y
}
|
02d5aef8c16f758e8ec24858452e1378541669d2e77e3a629dd426b6c62abf04 | NEURON | 265 | 31 | TITLE ...just to store peak membrane voltage
: M.Migliore June 2001
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
}
NEURON {
SUFFIX ds
RANGE vmax
}
ASSIGNED {
vmax
}
INITIAL {
vmax=v
}
BREAKPOINT {
if (v>vmax) {vmax=v}
}
|
9b9f0cced027be7ff5daa3fe5e14224599279f98cd235946b575f5e34d99759c | NEURON | 277 | 20 | : Voltage gap junstion
NEURON {
POINT_PROCESS Gap_neuron
NONSPECIFIC_CURRENT i
RANGE r, i, VoltageGap
}
PARAMETER {
r = 100000(megohm)
VoltageGap = -85 (millivolt)
}
ASSIGNED {
v (millivolt)
i (nanoamp)
}
BREAKPOINT {
i = (-VoltageGap +v)/r
} |
c632ac99544eb9b9108225582635c96910e01fab8ff532f808f6e11b756285d3 | NEURON | 308 | 22 | : Voltage gap junstion
NEURON {
POINT_PROCESS Gap
NONSPECIFIC_CURRENT i
RANGE r, i, VoltageGap
POINTER vgap
}
PARAMETER {
r = 100000(megohm)
VoltageGap = -85 (millivolt)
}
ASSIGNED {
v (millivolt)
vgap (millivolt)
i (nanoamp)
}
BREAKPOINT {
i = (-VoltageGap +v)/r
} |
c89d89b887d7a43aa74fa739d9c29bc09874508da45935f518302d0d9a3a6195 | NEURON | 315 | 29 | TITLE the leak current
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
NEURON {
SUFFIX leak
NONSPECIFIC_CURRENT i
RANGE gmax
THREADSAFE
}
PARAMETER {
gmax = 0.0001 (S/cm2)
Eleak = -65 (mV)
}
ASSIGNED {
v (mV)
i (mA/cm2)
}
BREAKPOINT {
i = gmax*(v-Eleak)
}
|
fc0d3eacd488a8c6046945c929ca97582188788083394303723fb30b79359ab2 | NEURON | 326 | 21 | TITLE GABA tonic passive membrane channel
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(S) = (siemens)
}
NEURON {
SUFFIX GABA_tonic
NONSPECIFIC_CURRENT i
RANGE g, e
}
PARAMETER {
g = 0.000000001 (S/cm2) <0,1e9>
e = -59 (mV)
}
ASSIGNED {v (mV) i (mA/cm2)}
BREAKPOINT {
i = g*(v... |
adb9a5aece5c86795a5af4ab42f69f78c2652785fd3172ac6682f6587d062067 | NEURON | 360 | 20 | TITLE gaba leak
COMMENT
If want outward rectification use tonicgaba2
ENDCOMMENT
NEURON{
SUFFIX gaba1
NONSPECIFIC_CURRENT i
RANGE i, e, gbar
}
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
gbar = 0 (siemens/cm2)
}
ASSIGNED{
v (mV)
i (milliamp/cm2)
minf
e (... |
458f755ad86440d3d56a82fa2e2b395934413e305f5f4d97c2cc0594a81e1dc7 | NEURON | 363 | 23 | // Create a soma
create soma
access soma
// Set the geometry of the soma
soma {
L = 50 // Length in micrometers
diam = 50 // Diameter in micrometers
}
// Define biophysical properties for the soma
soma {
Ra = 100 // Axial resistance in Ohm*cm
cm = 1 // Membrane capacitance in uF/cm^2
... |
b847b6c23b1bafe5a0e1d428ecddc212a8687d87988f899555e3d86c12cf9a5c | NEURON | 419 | 35 | : Linear kineticks of potassium pumping. 2018 Savtchenko et al.
TITLE kpump
NEURON {
SUFFIX kpump
USEION k READ ki, ko WRITE ik
RANGE Kp, Krest
}
UNITS {
(molar) = (1/liter)
(mV) = (millivolt)
(mM) = (millimolar)
(mA) = (milliamp)
}
PARAMETER {
Kp = 0.1 (mA/cm2)
Krest = 110 (mM)
}
ASSIGN... |
6771eb034771de86ab5a16ef458b26bb4edd033cbfd98ee11ed48e5c31c129e3 | NEURON | 442 | 35 | TITLE passive membrane channel with Glu conductance
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(S) = (siemens)
(molar) = (1/liter)
(mM) = (millimolar)
}
NEURON {
SUFFIX IKa
USEION k READ ki, ko WRITE ik
:NONSPECIFIC_CURRENT i
RANGE gk
}
PARAMETER {
gk = 0.001 (mS/cm2) <0,1e9>
:ki = 120 (mM) <0,... |
f352e73a99ed50467a155dfe48e6a46d051b3a2e069fbfd15a06ed0bb293653f | NEURON | 606 | 47 | COMMENT
Longitudinal diffusion of sodium (no buffering)
(equivalent modified euler with standard method and
equivalent to diagonalized linear solver with CVODE )
ENDCOMMENT
NEURON {
SUFFIX nadifl
USEION na READ ina WRITE nai
RANGE D
}
UNITS {
(mM) = (milli/liter)
(um) = (micron)
FARADAY = (faraday) (coulomb)
P... |
0c55168ee5698adc9ee607487b8507c38e1e45f96aaa32e9cec16507e8f22501 | NEURON | 622 | 39 |
: A simple membrane mechanism just for demo
: Can be replaced with any other which "USEION k READ ko WRITE ik"
NEURON {
SUFFIX iksine
USEION k READ ko WRITE ik
RANGE ik0, A, x, X, T
}
UNITS {
PI = (pi) (1)
}
PARAMETER {
ik0 (mA/cm2)
A (mA/cm2)
x (um)
X (um)
T (ms)
}
ASSIGNED {
... |
8d6659568d09552c6193eebfd26709f7c9ade99b9e1df97900f748245bad75af | NEURON | 632 | 38 | :NMODL for Sinusoid IClamp:
:Sinusoid current clamp
: The code was download from https://www.neuron.yale.edu/phpBB/viewtopic.php?t=1250
NEURON {
POINT_PROCESS IClampSin
RANGE del, dur, amp, freq, phase, bias
ELECTRODE_CURRENT i
}
UNITS {
(nA) = (nanoamp)
}
PARAMETER {
del=100000 (ms)
dur... |
c946d9e3a7afb306ee8a9db18d1800e4c88e3d7afd57b5d307ace074997d6b95 | NEURON | 701 | 55 | COMMENT
Longitudinal diffusion of potassium (no buffering)
Savtchenko et al., 2018
ENDCOMMENT
NEURON {
SUFFIX kdifl
USEION k READ ik, ki WRITE ki
RANGE Dk, ki0, iextra
}
UNITS {
(mM) = (milli/liter)
(um) = (micron)
FARADAY = (faraday) (coulomb)
PI = (pi) (1)
}
INITIAL {
ki = ki0
ka = ki
}
PARAMETER ... |
60c299a802dacb7defda704a99de82695f42e2726e216dd96d96c4fd2d4b36c1 | NEURON | 770 | 48 | TITLE inward rectifier potassium (Kir4) channel
COMMENT
This is kinetics of Kir4.1 channels
ENDCOMMENT
NEURON {
SUFFIX kir4
USEION k READ ko, ek WRITE ik
RANGE ik, gkir, NormK
}
UNITS {
(molar) = (1/liter)
(mA) = (milliamp)
(mV) = (millivolt)
(mS) = (millisiemens)
(mM) = (m... |
b3feb8215e5ba79070d9c6b132660d8449ea6a900999b140ad0cb1ce8b2ae0ca | NEURON | 794 | 43 | : calcium flux gap junction. 2018
: 04 01 2018
: Modification of ica
NEURON {
POINT_PROCESS GapCaExtr
USEION ca READ cai WRITE ica
RANGE TimeRelex, BasicCa, ExtraCaConcentration, fluxion
}
UNITS {
(molar) = (1/liter)
(mM) = (millimolar)
(um) = (micron)
(mA) = (milliamp)
FARADA... |
36073ba8b09896ed15a6f3a38d84cfc90b62fdb519293b26f1d53a3ed8e468c2 | NEURON | 849 | 60 | TITLE sodium potassium pump
: from Lindblad et al Am J Physiol 1996 275:H1666
NEURON {
SUFFIX NaKpump
USEION k READ ko WRITE ik
USEION na READ nai WRITE ina
RANGE ik, ina , INaKmax, ink, Kmko, Kmnai, ki0, nao0
GLOBAL dummy : prevent vectorization for use with CVODE
}
UNITS {
(mA) = (milliamp)
(mV) = (millivol... |
221f7442537fff598e109853ceec099dda542b71c2f6dd8ed15c887eb43c3f55 | NEURON | 850 | 66 | NEURON {
POINT_PROCESS IClampNoise
RANGE i,del,dur,f0,f1,r,torn,std,bias
ELECTRODE_CURRENT i
}
UNITS {
(nA) = (nanoamp)
}
PARAMETER {
del=50 (ms)
dur=200 (ms)
torn=500 (ms)
std=0.2 (nA)
f0=0.2 (nA)
f1=0.8 (nA)
r =60
bias = 0 (nA)
}
ASSIGNED {
ival (nA)
i (nA)
amp (nA)
no... |
3136cc2be718c69380bc93b246f08ef974da01c3608e101eb9c04a4af672f0e7 | NEURON | 892 | 48 | NEURON {
POINT_PROCESS Gap45
RANGE GVal, g, i, vgap, Ginf, Gtau
GLOBAL Nj, g_main, GMax
NONSPECIFIC_CURRENT i
THREADSAFE : assigned GLOBALs will be per thread
}
STATE { G }
PARAMETER {
Nj = 1000
g_main = 32 (picosiemens)
GMax (picosiemens)
}
INITIAL {
GMax = (((32-4.2393)/(1+exp((0-39.55)/10.24)))+4.2393)+... |
0e7cd8c5d27c34d44e9b87e0e16ef63c19365f30f408c90f29f9c5df204d7bcc | NEURON | 894 | 25 | TITLE gaba leak
COMMENT
If want ohmic gaba use tonicgaba1
From Pavlov et al., 2009
Outwardly Rectifying Tonically Active GABAA Receptors in Pyramidal Cells Modulate Neuronal Offset, Not Gain
ENDCOMMENT
NEURON{
SUFFIX gaba2
NONSPECIFIC_CURRENT i
RANGE i, e, gbar, minf
}
UNITS {
(mA) = (milliamp)
(mV... |
42728bbe4993f7a3a34d8c95b825165e39f08841e077918aacb723fabb920081 | NEURON | 900 | 48 | NEURON {
POINT_PROCESS Gap43
RANGE GVal, g, i, vgap, Ginf, Gtau
GLOBAL Nj, g_main, GMax
NONSPECIFIC_CURRENT i
THREADSAFE : assigned GLOBALs will be per thread
}
STATE { G }
PARAMETER {
Nj = 1000
g_main = 61 (picosiemens)
GMax (picosiemens)
}
INITIAL {
GMax = (((61-14.6460)/(1+exp((0-61.41)/8.405)))+14.6460... |
823a77f6ceb66f96fb32a230d32dbebd720bcc8c30c9af49258bafae53e51abf | NEURON | 913 | 48 | NEURON {
POINT_PROCESS Gap40
RANGE GVal, g, i, vgap, Ginf, Gtau
GLOBAL Nj, g_main, GMax
NONSPECIFIC_CURRENT i
THREADSAFE : assigned GLOBALs will be per thread
}
STATE { G }
PARAMETER {
Nj = 1000
g_main = 162 (picosiemens)
GMax (picosiemens)
}
INITIAL {
GMax = (((162-23.6384)/(1+exp((0-57.74 )/13.42)))+23.6... |
d8b379384803cadbabfbbbf51aa32a9c22aca30f3a67cf658980a6a93892877b | NEURON | 922 | 61 | TITLE Sodium persistent current for RD Traub, J Neurophysiol 89:909-921, 2003
COMMENT
Implemented by Maciej Lazarewicz 2003 (mlazarew@seas.upenn.edu)
ENDCOMMENT
INDEPENDENT { t FROM 0 TO 1 WITH 1 (ms) }
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
}
NEURON {
SUFFIX nap
USEION na READ ena WRITE ina
RANGE... |
4d4d8e4025725ab3d7c316dfda95faedc4c444a82dad5fcc54c5c6488dca8acd | NEURON | 959 | 55 | TITLE Ampa synapse
COMMENT
simple alpha-synapse that generates a single PSP
*********************************************
reference: McCormick, Wang & Huguenard (1993)
Cerebral Cortex 3(5), 387-398
*********************************************
Assembled for MyFirstNEURON by... |
560686512e781ed5f8b1cf2809a2014c15746685b888c6255261525cf2a5a0f9 | NEURON | 962 | 70 | TITLE KCNQ potassium channel for GPe neuron
COMMENT
modeled by Gunay et al., 2008
implemented in NEURON by Kitano, 2011
ENDCOMMENT
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
}
NEURON {
SUFFIX kcnq
USEION k READ ek WRITE ik
RANGE gmax, iKCNQ
}
PARAMETER {
v (mV)
dt (ms)
gmax = 0.001 (mho/cm2)
ikcnq = ... |
fd971b053a9a35f20317aefd9ec1fb4078c2fa0de90f8f4b14f322b02e596a35 | NEURON | 967 | 56 | TITLE decay of submembrane calcium concentration
:
: Internal calcium concentration due to calcium currents and pump.
: Pump action is approximated by a simple first order decay.
NEURON {
SUFFIX cad
USEION ca READ ica, cai WRITE cai
RANGE depth,kd,cainf,taur
}
UNITS {
(molar) = (1/liter) : moles do not appear i... |
72884396e921b6e6f1a37ba5509b9d3d122cfbb227ce614e43c53660fb80e42f | NEURON | 1,026 | 80 | : Vector stream of events
NEURON {
THREADSAFE
ARTIFICIAL_CELL VecStim
POINTER ptr
}
ASSIGNED {
index
etime (ms)
ptr
}
INITIAL {
index = 0
element()
if (index > 0) {
net_send(etime - t, 1)
}
}
NET_RECEIVE (w) {
if (flag == 1) {
net_event(t)
element()
if (index > 0) {
net_send(etime - t, 1)
... |
be4baec069e0462e5a7bcfae560f59126dea4434ccd64c727b6aced0a0fea15e | NEURON | 1,032 | 71 | : Kv2.1
: from Beining et al (2016), "A novel comprehensive and consistent electrophysiologcal model of dentate granule cells"
NEURON {
SUFFIX Kv21
USEION k READ ek WRITE ik
RANGE gkbar, gk, ik
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gkbar = 0.00001 (S/cm2)
}
ASSIGNED {
... |
5ea614cd8609519b50fbf5feb302ce5e76c7d3ced19d4b9e69b96acd796f5bbd | NEURON | 1,034 | 46 | COMMENT
calcium accumulation into a volume of area*depth next to the
membrane with a decay (time constant tau) to resting level
given by the global calcium variable cai0_ca_ion
ENDCOMMENT
NEURON {
SUFFIX gabaacum
USEION gaba READ gabao WRITE gabao
RANGE depth, tau, gabao... |
8d9f3391ebb8c4e50a71c92a7d7415d6599ff6e441db39e6e42fa24cd07da2ad | NEURON | 1,042 | 92 | TITLE CA1 KM channel from Mala Shah
: M. Migliore June 2006
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ek
celsius (degC)
gbar=.0001 (mho/cm2)
vhalfl=-20 (mV)
kl=-2
vhalft=-50 (mV)
a0t=0.0005 (/ms)
zetat=8 (1)
gmt=.5 (1)
q10... |
cd8ee6da62eddb37a67f71325c5160e2504970a6ff1b835faf9c6ff8647608d3 | NEURON | 1,054 | 49 | : calcium flux gap junction. 2018
: 04 01 2018
: Modification of ica
NEURON {
POINT_PROCESS GapCa
NONSPECIFIC_CURRENT icagap
USEION ca READ cai WRITE ica
RANGE TimeRelex, icagap, ica, BasicCa, fluxion, jd, ControlGap
POINTER gapCaP
}
UNITS {
(molar) = (1/liter)
(mM) = (millimolar)
(um)... |
89ee5eb9bcb20e23fe4f67f61f87bb719c61f773a3d442fbc4aa89664300a641 | NEURON | 1,099 | 57 | COMMENT
calcium accumulation into a volume of area*depth next to the
membrane with a decay (time constant tau) to resting level
given by the global calcium variable cai0_ca_ion
Modified to include a resting current (irest) and peak value
(cmax)
i is a dummy current needed to force a BREAKPOINT
ENDCOMMENT
NEURON ... |
a2585b735783ebb9b5eca0fc8df1e5b586f310f335034d60ec0147da6a52cc60 | NEURON | 1,134 | 73 | COMMENT
:[$URL: https://bbpteam.epfl.ch/svn/analysis/trunk/IonChannel/xmlTomod/CreateMOD.c $]
:[$Revision: 1367 $]
:[$Date: 2010-03-26 15:17:59 +0200 (Fri, 26 Mar 2010) $]
:[$Author: rajnish $]
:Comment :
:Reference :Expression of a cloned rat brain potassium channel in Xenopus oocytes. Science, 1989, 244, 221-4
ENDCOM... |
8dc0e8f7ee9d8a13f217edbb11c535f9d34a861e0af41add3914f4462e247962 | NEURON | 1,164 | 91 | TITLE I-h channel from Magee 1998 for distal dendrites
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ehd = -30 (mV)
celsius (degC)
ghdbar=.0001 (mho/cm2)
vhalfl=-81 (mV)
kl=-8
vhalft=-75 (mV)
a0t=0.011 (/ms)
zetat=2.2 (1)
... |
a50c6c46366ccddf0a2f2bee6a49dc7f56fff8bda044ef6f912b096b679df87f | NEURON | 1,166 | 91 | TITLE I-h channel from Magee 1998 for distal dendrites
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ehd (mV)
celsius (degC)
ghdbar=.0001 (mho/cm2)
vhalfl=-81 (mV)
kl=-8
vhalft=-75 (mV)
a0t=0.011 (/ms)
zetat=2.2 (1)
... |
2b5e20f13647f3d1f2a000f0ad9281e1f41a5ba6a483ba9f76f9da026c7a3a3e | NEURON | 1,175 | 90 | TITLE K-D channel
: M.Migliore jun 2006
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ek (mV) : must be explicitely def. in hoc
celsius (degC)
gkdbar=.0 (mho/cm2)
vhalfn=-33 (mV)
a0n=0.005 (/ms)
zetan=3 (1)
gmn=0.7 (1)
nmax=2 (1)
q10=1... |
4726d1694e736584dcbb96e1577a3fd376f990557231dcefb8c0296ed47c8276 | NEURON | 1,176 | 90 | TITLE K-D channel
: M.Migliore jun 2006
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ek (mV) : must be explicitely def. in hoc
celsius (degC)
gkdbar=.0 (mho/cm2)
vhalfn=-65 (mV)
a0n=0.005 (/ms)
zetan=2 (1)
gmn=0.9 (1)
nmax=2 (1)
q10=1... |
c9842cba7436b97a35e56f0690cf5e924c66e93830fb390b0139ed2ae3fa40f6 | NEURON | 1,197 | 71 | TITLE SK-type calcium activated K channel
UNITS {
(molar) = (1/liter)
(mV) = (millivolt)
(mA) = (milliamp)
(mM) = (millimolar)
}
NEURON {
SUFFIX sk
USEION ca READ cai
USEION k READ ek WRITE ik
RANGE gbar, ik, I
}
PARAMETER {
gbar = 0.0 (mho/cm2)
q = 1
}
ASSIGNED {
v (mV)
... |
b06c0a3dc2c4418bd547979658ebf98a8e9d55b0765a87d1b3409c7236bd5908 | NEURON | 1,228 | 91 | TITLE K-DR channel
: from Klee Ficker and Heinemann
: modified to account for Dax et al.
: M.Migliore 1997
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ek (mV) : must be explicitely def. in hoc
celsius (degC)
gkdrbar=.003 (mho/cm2)
vhalfn=5 (mV)
a0n=0.006 (/... |
3fe90a22d9c9a6c1164d8fe7601d044c63312f92f0801200aa642cac23559caa | NEURON | 1,250 | 92 | TITLE K-DR channel
: from Klee Ficker and Heinemann
: modified to account for Dax et al.
: M.Migliore 1997
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ek (mV) : must be explicitely def. in hoc
celsius (degC)
gkdrbar=.003 (mho/cm2)
vhalfn=13 (mV)
a0n=0.02 (/... |
83f8c5ff9bb4e4b4103225b9ab6005aaeeeab469d39c8f2b167704aa33f90a56 | NEURON | 1,290 | 59 | TITLE Calcium dynamics for L and T calcium pool
NEURON {
SUFFIX caldyn
USEION cal READ ical, cali WRITE cali VALENCE 2
RANGE pump, cainf, taur, drive
}
UNITS {
(molar) = (1/liter)
(mM) = (millimolar)
(um) = (micron)
(mA) = (milliamp)
(msM) = (ms mM)
FARADAY = (faraday) (coulomb)
}... |
b342347d02f06b6baf3b083190ccc0650c48adb5a499e162dc31ca3f00028b43 | NEURON | 1,397 | 92 | TITLE I-h channel from Magee 1998 for distal dendrites
: default values are for dendrites and low Na
: plus leakage, M.Migliore Mar 2010
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ehd (mV)
celsius (degC)
ghdbar=.0001 (mho/cm2)
vhalfl=-90 (mV)
vhal... |
74d789bc77ec2c8608c6df9cc00423e986684ad4ff7c2912b32f64f6d35b19c2 | NEURON | 1,402 | 88 | TITLE CaGk
: Calcium activated K channel.
: Modified from Moczydlowski and Latorre (1983) J. Gen. Physiol. 82
UNITS {
(molar) = (1/liter)
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(mM) = (millimolar)
}
NEURON {
SUFFIX cagk
USEION ca READ cai
USEION k READ ek WRITE ik
RANGE gbar,gkca,ik
GLOBAL oinf, ta... |
0d842eb8776599a232d3166b668108131f6a25f5897b32049acb42867d290433 | NEURON | 1,417 | 71 | : Ca local fluxe. 2018, Savtchenko et al.,
NEURON {
POINT_PROCESS GapCaSt
NONSPECIFIC_CURRENT icagap
USEION ca READ cai WRITE ica
RANGE r, icagap, ica, tau1, tau2, ECa, period, amplit
}
UNITS {
(molar) = (1/liter)
(mM) = (millimolar)
(um) = (micron)
(mA) = (milliamp)
FARADAY = (fa... |
0a6bdd1c308617fdf4ee7575d6d2e4d905d96a1ec8a3c90e23ca9c556259b796 | NEURON | 1,482 | 53 | // Create soma
create soma
access soma
// Set the geometry of the soma
soma {
L = 10 // Length in micrometers
diam = 10 // Diameter in micrometers
}
// Create processes
create dendrite1, dendrite2, dendrite3, dendrite4, dendrite5
// Set the geometry of the processes
proc set_process_geometry() {
nseg... |
350389170f771bceb6f1716f8df54c10524b7f5ae557e68124fc2b9602884873 | NEURON | 1,577 | 79 | : Ca channels (N-type) from Aradi and Holmes 1999, transferred from GENESIS to NEURON
: increased inactivation time constant and corrected calcium handling by Beining et al (2016), "A novel comprehensive and consistent electrophysiologcal model of dentate granule cells"
NEURON {
SUFFIX Cav22
USEION ca READ eca WRI... |
049aabe7ff8f7e34d7f568b87086f49c5821ccb996ea29a1b7357b893ef09bd4 | NEURON | 1,629 | 56 | NEURON {
SUFFIX GAT1_current
GLOBAL Temperature
USEION gaba READ gabai, gabao WRITE igaba VALENCE 0
RANGE Egat, conductance
NONSPECIFIC_CURRENT iGAT :add to local membrane current but not affecting particular ion conc.
: Na+ and Cl- read live from ion pools each timestep.
: READ only -- electrogenic charge alr... |
fb1e12d9c8acf4394ca826d22a70fb579f47e852558ad7de567c0776d08ddd6b | NEURON | 1,638 | 62 | : GluUptake.mod
:
: Linear glutamate uptake mechanism for BrainCell.
: Savtchenko / Rusakov Lab, UCL.
:
: Simple passive uptake driven by the difference between
: the local extracellular glutamate concentration (gluo) and
: a baseline resting concentration (gluobasic).
:
: Formula:
: iglu = gluconductance * (gluo - g... |
432a7228757d501a3a8b324ae65e527994c150122ca1cdd4564644f1783cb2cc | NEURON | 1,685 | 65 | : GABA_tonic_gabao.mod
: GABA tonic receptor - conductance gated by extracellular GABA concentration
:
: The steady-state conductance follows a Hill equation in gabao (mM):
:
: g = g_max * gabao^n_Hill / (EC50^n_Hill + gabao^n_Hill)
:
: This captures the nonlinear occupancy of extrasynaptic GABA-A receptors
: (delta-... |
3a2db66e78816134cc0f2383ecd362d0f945231067e9540d5455088f9008dcc2 | NEURON | 1,703 | 118 | TITLE l-calcium channel
: l-type calcium channel
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
FARADAY = 96520 (coul)
R = 8.3134 (joule/degC)
KTOMV = .0853 (mV/degC)
}
PARAMETER {
v (mV)
celsius (degC)
gcalbar=.003 (mho/cm2)
ki=.001 (mM)
cai = 50.e-6 (mM)
cao = 2 (mM)
q10 = 5
mmin=0.2
tfa = 1
a0m =0.... |
9977bfbaf0b5032b08f8fc5d9d056205d370d7c1ae172e7a141456ec514a5737 | NEURON | 1,726 | 93 | TITLE kdrglia
: Kalium delayed rectifier (AHP)
: twee gates met elk twee toestanden
:
: uit: Traub et al.
: A branching dendritic model of a rodent CA3
: pyramidal neurone.
: Mechanism was donwloaded from https://senselab.med.yale.edu/modeldb/showmodel.cshtml?model=113446&file=/neuron-2008b/kdrglia.mod#tabs-2
UNITS {... |
8515996877be666bbfb9839f16e167ae1d93d34375b6376698b1b45a2aa63e5d | NEURON | 1,812 | 70 | // Create a soma
create soma
access soma
// Set the geometry of the soma
soma {
L = 20 // Length in micrometers
diam = 20 // Diameter in micrometers
insert hh // Insert Hodgkin-Huxley channels
}
// Create a dendrite
create dend
access dend
// Set the geometry of the dendrite
dend {
nseg = 5 // Nu... |
aaff5fb2fd617adda6009112e62be539421803e0744ae0f68d65f374b7c4a95b | NEURON | 1,824 | 111 |
: CA1 pyramidal neuron to study INaP properties and repetitive firing (Uebachs et al. 2010)
: The file was downloaded from https://senselab.med.yale.edu/ModelDB/showmodel.cshtml?model=125152
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
(molar) = (1/liter)
(mM) = (millimolar)
F = 96485 (coul)
... |
12c4e722062204197225306ea2a47254bb637a89edb9845afac5266f26335124 | NEURON | 1,847 | 82 | : model from Evans et al 2013, transferred from GENESIS to NEURON by Beining et al (2016), "A novel comprehensive and consistent electrophysiologcal model of dentate granule cells"
: also added Calcium dependent inactivation
NEURON {
SUFFIX Cav12
USEION ca READ cai, eca WRITE ica :,cai,cao...., cai, cao
USEION lc... |
a1dc0722b7a3d449de0feb53fec397b33854064a60b0d2a8714255e5206cc53f | NEURON | 1,852 | 101 | TITLE nax
: Na current for axon. No slow inact.
: M.Migliore Jul. 1997
: added sh to account for higher threshold M.Migliore, Apr.2002
NEURON {
SUFFIX nax
USEION na READ ena WRITE ina
RANGE gbar, sh
GLOBAL minf, hinf, mtau, htau,thinf, qinf
}
PARAMETER {
sh = 8 (mV)
gbar = 0.010 (mho/cm2)
tha ... |
7b91b81c6316e86bcae94256f4f42dd750ba4a23fa21d3d6b2b19678a4927cc4 | NEURON | 1,880 | 121 | TITLE K-A channel from Klee Ficker and Heinemann
: modified to account for Dax A Current --- M.Migliore Jun 1997
: modified to be used with cvode M.Migliore 2001
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
celsius (degC)
gkabar=.008 (mho/cm2)
vhalfn=16 (mV)
vhalfl=-51 ... |
468cdc3b825e09c4c3b76e4400fdad221e46b9c5480f2a777e057592c3388b8c | NEURON | 1,890 | 58 |
COMMENT
This artificial cell plays 2 roles:
1. It implements the release probability mechanics.
2. It informs HOC code about synaptic events.
To use it, we replace this chain:
NetCon -> Target PP
with longer one:
NetCon -> SynEventsFilterWatcher -> NetCon -> Target PP
(The ... |
afc8a04a4abc479c1debe2e9fd8f0b6a555f2ba9df63e9a434cc9b4eae7afd8c | NEURON | 1,897 | 83 | : model from Evans et al 2013, transferred from GENESIS to NEURON by Beining et al (2016), "A novel comprehensive and consistent electrophysiologcal model of dentate granule cells"
: also added Calcium dependent inactivation
NEURON {
SUFFIX Cav13
USEION ca READ cai, eca WRITE ica :,cai,cao...., cai, cao
USEION lc... |
2b725c4cda9b95944ab5fdc039c6adca8b28ab19bf2e2b499f4ecd414b74d6bd | NEURON | 1,898 | 101 | TITLE Inwardly rectifying potassium current
COMMENT
neuromodulation is added as functions:
modulation = 1 + damod*(maxMod-1)*level
where:
damod [0]: is a switch for turning modulation on or off {1/0}
maxMod [1]: is the maximum modulation for this specific channel (read from the param file)
... |
176de966116dffbfdf0e151acc24388ae7b1a1ccd32b281a818c5cae940f00b1 | NEURON | 1,904 | 107 | TITLE K-A channel from Klee Ficker and Heinemann
: modified to account for Dax A Current ----------
: M.Migliore Jun 1997
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
celsius
v (mV)
gkabar=.008 (mho/cm2)
vhalfn=4 (mV)
vhalfl=-51 (mV)
a0l=0.05 ... |
87aa514c1264e72c23d34e46e661e4572bd32ea9262353eb1269d680ba1b00dd | NEURON | 1,914 | 129 | TITLE T-calcium channel
: T-type calcium channel
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
(molar) = (1/liter)
(mM) = (millimolar)
FARADAY = 96520 (coul)
R = 8.3134 (joule/degC)
KTOMV = .0853 (mV/degC)
}
PARAMETER {
v (mV)
celsius = 25 (degC)
gcatbar=.003 (mho/cm2)
cai = 50.e-6 (mM)
cao = 2 (mM)
q10... |
8caae01c9bcb9d2981b687969e007f5d5658914ebbaab554d5e5be05ebbee1c5 | NEURON | 1,947 | 100 | COMMENT
Mechanism taken from Doron et al., 2017
https://senselab.med.yale.edu/ModelDB/ShowModel.cshtml?model=231427&file=/reproduction/Im.mod#tabs-2
Reference : Adams et al. 1982 - M-currents and other potassium currents in bullfrog sympathetic neurones
corrected rates using q10 = 2.3, target temperature 34, orgi... |
1af9fb97a4643df627851cce0bde36cb62b3ea4509765192cd8631fe4570de95 | NEURON | 2,097 | 111 | TITLE Slow A-type potassium current (Kv1.2)
COMMENT
neuromodulation is added as functions:
modulation = 1 + damod*(maxMod-1)*level
where:
damod [0]: is a switch for turning modulation on or off {1/0}
maxMod [1]: is the maximum modulation for this specific channel (read from the param file)
... |
e3f11aa5fca91f63616791da69acbdd3ed28efa05cf9b312335cacd26ad0a31b | NEURON | 2,098 | 137 | TITLE n-calcium channel
: n-type calcium channel
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
FARADAY = 96520 (coul)
R = 8.3134 (joule/degC)
KTOMV = .0853 (mV/degC)
}
PARAMETER {
v (mV)
celsius (degC)
gcanbar=.0003 (mho/cm2)
ki=.001 (mM)
cai=50.e-6 (mM)
cao = 2 (mM)
q10=5
mmin = 0.2
hmin = 3
a0m =... |
c2b5450d074df218f6888de65698a4ae649372ffc205d1ce1af8b250cc411a16 | NEURON | 2,156 | 69 | : Calcium buffer shell model with instant Calcium handling for clustered channels by Beining et al (2016), "A novel comprehensive and consistent electrophysiologcal model of dentate granule cells"
NEURON {
SUFFIX Cabuffer
USEION ca READ ica,cai,cao WRITE cai, cao
USEION nca READ inca WRITE ncai VALENCE 0
USEION lc... |
9af129ed3483d7cb11437fca1688a46f2bf8f5a0ddf4aeaae8f7d77d991d9ddc | NEURON | 2,166 | 104 | TITLE T-type calcium channel (Cav3.3)
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(S) = (siemens)
(molar) = (1/liter)
(mM) = (millimolar)
FARADAY = (faraday) (coulomb)
R = (k-mole) (joule/degC)
}
NEURON {
SUFFIX cav33
USEION cal READ cali, calo WRITE ical VALENCE 2
RANGE pbar,... |
266efbaa9b84669ab378492ac5933da576d03ce956eea3a818a5c9f89752aa17 | NEURON | 2,233 | 90 |
COMMENT
i to flux converter
This helper membrane mechanism is used in Python as following:
node.include_flux(segm._ref_kflux_i2fc)
NEURON RxD docs:
https://nrn.readthedocs.io/en/latest/python/modelspec/programmatic/rxd.html#rxd.node.Node.include_flux
Notice t... |
dcc0178f3bb6776c98180b2d9ec90dea9b1f86d21e0af35e42fd920377507edc | NEURON | 2,249 | 103 | TITLE T-type calcium channel (Cav3.2)
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(S) = (siemens)
(molar) = (1/liter)
(mM) = (millimolar)
FARADAY = (faraday) (coulomb)
R = (k-mole) (joule/degC)
}
NEURON {
SUFFIX cav32
USEION cal READ cali, calo WRITE ical VALENCE 2
RANGE pbar,... |
eee83ec5c3d7a92e4a24330a86738af6384475207b58b98e23c4a81f35d0b044 | NEURON | 2,343 | 79 | : GluSrc.mod
:
: Glutamate source mechanism for BrainCell.
: Savtchenko / Rusakov Lab, UCL.
:
: Generates iglu (mA/cm2) as a train of alpha-function pulses.
: _InsideOutDiffHelper.mod reads iglu and converts it to gluo via Faraday's law.
:
: Alpha function for each pulse:
: iglu(t) = amplitude * ((t - t_pulse) / tau)... |
43bea76b465f4a782b96642c3d6179cc444f963e8291154af9f111013dfdf02c | NEURON | 2,419 | 89 | TITLE inward rectifier potassium (Kir) channel
COMMENT
Mod File by A. Hanuschkin <AH, 2011> for:
Yim MY, Hanuschkin A, Wolfart J (2015) Hippocampus 25:297-308.
http://onlinelibrary.wiley.com/doi/10.1002/hipo.22373/abstract
Channel description and parameters from:
Stegen M, Kirchheim F, Hanuschkin A, Staszewski O, Ve... |
22336a46447b58c7fb33e2d59d5df86a8e5b249fa2ab545f2f43659804f5b4b9 | NEURON | 2,435 | 127 | COMMENT
Updated Exp2Syn synapse including a modulation function.
Defaul values of parameters (time constants etc) set to match synaptic channels in
striatal medium spiny neurons, following Wolf et al., 2007 -> Galaretta 1997
modulation = 1 + damod*( (maxMod-1)*level + (max2-1)*lev2 )
two substrates can modulate... |
fb4bbc7ad21c5ae3c38d5894919d3a3a05b35546dd9a7ff99454d55ed05cefd4 | NEURON | 2,435 | 95 | : the dynamics mechanism of the FRAP is developed by Savchenko and others. 2018
NEURON {
SUFFIX FRAP
USEION frapion READ frapiono, frapioni, ifrapion WRITE frapioni VALENCE 1
GLOBAL vol, Buffer0
RANGE frapion0, Alpha
}
DEFINE NANN 4
UNITS {
(molar) = (1/liter)
(mM) = (millimolar)
(um) =... |
7252a2de075663c536d99e7b9083857e7895021363d1edaa17c9bc8fcee6ebfc | NEURON | 2,633 | 132 | TITLE na3
: Na current
: modified from Jeff Magee. M.Migliore may97
: added sh to account for higher threshold M.Migliore, Apr.2002
NEURON {
SUFFIX na3
USEION na READ ena WRITE ina
RANGE gbar, ar, sh
GLOBAL minf, hinf, mtau, htau, sinf, taus,qinf, thinf
}
PARAMETER {
sh = 8 (mV)
gbar = 0.010 (mho/cm2)
... |
85572ecba4c6d231545f7763961600ecd101dbcc52b25de25efbf0dca0b15417 | NEURON | 2,694 | 114 | TITLE Kv4.2 with auxilliary subunits
COMMENT
This is the model of Barghaan et al. 2008: Role of N-terminal domain and accessory subunits in controlling deactivation-inactivation coupling of Kv4.2 channels.. Biophysical Journal
: implemented by M.Beining; Beining et al (2016), "A novel comprehensive and consistent elec... |
f8da3c82437e793c9db5de99be0cadcc5695a9e6968db5adfc44e9df1a565603 | NEURON | 2,696 | 124 | TITLE Fast A-type potassium current (Kv4.2)
COMMENT
neuromodulation is added as in two ways:
1. A shift parameter is added to the infinity curves that can be used to shift the voltage
dependece of the channel. By deafult this does not also shift the time constant.
2. A function that scales the conductance of the ... |
6d0f3107ae2792c9e47255f0089071c753cf820b3778ecd9a6e4877503d815d6 | NEURON | 2,855 | 84 | // ============================================================
// Cell 1 Geometry — Presynaptic Neuron
// Soma : sphere approximated by 8 cylindrical sections (s1_0..s1_7)
// laid out along X from 0 to 8*R1/Deformation
// diameter profile: 2*R1*cos(theta) gives spherical cross-section
// Dend : secti... |
2adeab809f71b1bf8f1359db6be5130cd47c879a9948b3f88c9f77afae5742a3 | NEURON | 2,861 | 99 | TITLE Kv14.mod - modified potassium channels
COMMENT
This is a Hodgkin-Huxley model of inactivating K channels
modified from hh.mod
P. Jonas, 12 September 2001
temperature dependence is given up - Q10 scaling is not used any longer
Reference: Hines and Carnevale, Expanding NEURON's repertoire of mechanisms with NM... |
1fc3ed5db236702ffb6875cf91e6ca7105835d2c9f9b9f0bdc7e8b925f7df9ab | NEURON | 2,865 | 83 | // ============================================================
// Cell 3 Geometry — Astrocyte template (reusable)
// Soma : sphere approximated by 8 cylindrical sections (s3_0..s3_7)
// laid out along X from 0 to 8*R3/Deformation, at Y = CY3
// diameter profile: 2*R3*cos(theta) gives spherical cross-s... |
5fc70a049495aea34068c0ec069bbe815442815adc1839a0554774c0950a01ed | NEURON | 2,887 | 136 | : M conductance
: from Mateos-Aparicio et al (2014)
NEURON {
SUFFIX Kv723
USEION k READ ek WRITE ik
RANGE gkbar, ik, minf, tau1, tau2, i, gk, m1, m2, tadjtau
GLOBAL Vhalf, Vshift, k, v0erev, kV, gamma
GLOBAL Dtaumult1, Dtaumult2, tau0mult, taudiv, q10tau
}
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
(S) = (s... |
2cb7adb8e4a1381d5e130294bdc9e9ca5161196fe3bd30d6c7401c21c5fbc7e7 | NEURON | 3,017 | 85 | // ============================================================
// Cell 2 Geometry — Postsynaptic Neuron
// Soma : sphere approximated by 8 cylindrical sections (s2_0..s2_7)
// laid out along X from CX2 to CX2 + 8*R2/Deformation
// diameter profile: 2*R2*cos(theta) gives spherical cross-section
// Dend... |
19455b1118be8449ff13ddbf9fdc1d7d1e8f3dcec56c170c16dc19627e236d32 | NEURON | 3,113 | 116 | TITLE Juxtaparanodal Potassium Channels for CNS Axons
: Based on McIntyre et al. 2002 and Devaux et al. 2002
: References in Oozeer 2006 for CNS myelinated fibers
: Two types of K channels in juxtaparanodal regions:
: 1. DTX-I sensitive (Kv1.1/1.2 family)
: 2. KTX sensitive channels
: These are located in the juxtapara... |
363d7ed34403c78c672e18ae8304de32d0fb4feb7436a42a04f0e678590dcbdb | NEURON | 3,139 | 136 | : $Id: netstim.mod,v 1.1.1.1 2001/01/01 20:30:37 hines Exp $
: modified in such a way that the first event will never be before start
: M.Migliore Dec.2001
NEURON {
POINT_PROCESS NetStimm
RANGE y
RANGE interval, number, start
RANGE noise
}
PARAMETER {
interval = 10 (ms) <1e-9,1e9>: time between spikes (msec... |
e1c69b2a73b9a823d3db2b99cf1f3bfe12bd6d03d692bd5528696a30a919aa94 | NEURON | 3,218 | 160 | TITLE HH style channels for spiking retinal ganglion cells
:
: Modified from Fohlmeister et al, 1990, Brain Res 510, 343-345
: by TJ Velte March 17, 1995
: must be used with calcium pump mechanism, i.e. capump.mod
:
:
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
NEURON {
SUFFIX spike
USEION na READ ena WRITE ina
USEION... |
7adc7810decfc1f2e6bd53f44905b35b1664fb74cf079c6560053c2e14227683 | NEURON | 3,221 | 138 | COMMENT
Noise current characterized by gaussian distribution
with mean mean and standerd deviation stdev.
Borrows from NetStim's code so it can be linked with an external instance
of the Random class in order to generate output that is independent of
other instances of InGau.
User specifies the time at which the n... |
b3db862bd1bf9d38ff1fc387e3a6bfc33794d291f22ec38d0bb0f11345ccd789 | NEURON | 3,231 | 134 | TITLE Fast transient sodium current
COMMENT
neuromodulation is added as functions:
modulation = 1 + damod*(maxMod-1)*level
where:
damod [0]: is a switch for turning modulation on or off {1/0}
maxMod [1]: is the maximum modulation for this specific channel (read from the param file)
... |
05eaff047e0c856f30d03a506dac0e9986f246a4463cb44786f236c39137b713 | NEURON | 3,352 | 129 | TITLE hh.mod squid sodium, potassium, and leak channels
COMMENT
This is the original Hodgkin-Huxley treatment for the set of sodium,
potassium, and leakage channels found in the squid giant axon membrane.
("A quantitative description of membrane current and its application
conduction and excitation in nerv... |
02023559efbc196ce9dd2c2c0e591f1808dbdcc6baf5fbfdd13d07f010245e0b | NEURON | 3,477 | 141 | COMMENT
The model of Glutamate transporter.
is based on two papers,
from the paper
1. Zhang Z1, Tao Z, Gameiro A, Barcelona S, Braams S, Rauen T, Grewer C.
Transport direction determines the kinetics of substrate transport by the glutamate transporter EAAC1.
Proc Natl Acad Sci U S A. 2007 Nov 13;104(46):18025-30... |
66b1de3446a8fdabd46b7b6f21e17b2f45a9ef333c64b24f9b87770f99a58a1b | NEURON | 3,512 | 122 | TITLE Kir potassium current
COMMENT
Kir 2.1 (Mg high-affinity) model
from Beining et al (2016), "A novel comprehensive and consistent electrophysiologcal model of dentate granule cells"
based on
Yan & Ishihara (2005): Two Kir2.1 channel populations with different sensitivities to Mg(2+) and polyamine block: a model ... |
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