sha256 stringlengths 64 64 | language stringclasses 28
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|---|---|---|---|---|
046d5f4d40bb6cc90d59eafc9baea8ba35038ca53ce9b3af8a3f7ab809c01528 | Stan | 3,270 | 125 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
efa6626ea5b026b234055e10a2a135e219806660287fff5523c0b35b4b41ca72 | Stan | 3,324 | 115 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
fdd9b42a6608880bc46c6474894e76b90bef1ec74213e922e8c4b23e0e4eec6c | Stan | 3,341 | 115 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
585348f9b13ed3ddc66490a7749b8aaef5b12859231b3800d69dedca0c5b1c73 | Stan | 3,531 | 116 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
8f67605ac00b5545c694d244d72c578619fbd7509f25a34e5bfe550bc806affe | Stan | 3,591 | 122 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
3d13bb96d456e51b03dd973681d7211eeb78e887f06222607f63f605854bd2d2 | Stan | 3,780 | 125 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
ea071663da0b5e6a6ad64aebe9d606ec7b316f932d607c06f369080621920e6b | Stan | 3,797 | 137 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
9351a967e6bfa18c120648db16b8e10da5bd0784cc983bb19a7d04f36bc6bbb5 | Stan | 3,817 | 134 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
15b234a76f44abbc685bce42ea26bf4080efe50f52cfa2730576726890322ff6 | Stan | 4,064 | 152 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
4f7aad1c967f3b87d3885b77d5241ff9cab2207f8a8f25d4c96cc3231b75bc6a | Stan | 4,076 | 150 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
b18c5b365c0418a81c2b1e71225f3b679073bd90fa3f9ca65b6a05923c8207b6 | Stan | 4,095 | 136 | functions {
real qlearningpn_log(int[] ACC, real alphaG, real alphaL, real beta, int ntrials, int[] pair, int[] reward) {
vector[6] Q;
real LL;
real logPt;
int a;
int A;
int B;
real pe; // prediction error
real offset; // for logsumexp trick
Q <- rep_vector(0, 6);
LL <- ... |
3ccf744be96f55ed3d98e9cd95f6b651d4339ec891dbd92ca9f4fb16ee1f8407 | Stan | 4,173 | 141 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
b723340dd3e12f7b5304c8563ef8f04cec2fe9337c73c2955356f0006c6e4f64 | Stan | 4,183 | 163 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
b41c7641de03d42c961e729ec2d19ac48f3396eefec87d29921a57393d074872 | Stan | 4,505 | 158 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
a0774df7f91a53f7193d2dbbed39be3fb7a8dc74326b815ccef29610d06212f7 | Stan | 4,512 | 156 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
67bd892c216c8f724c88712add4fb8d53e6ef3ebf13e1e68d23751828ff4b1f1 | Stan | 4,615 | 109 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
c6bcf847591d873a70420830f5515211db23c2048949ac5a361fe9a631bfceeb | Stan | 4,656 | 141 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
d8e52f7f948828fb2a9fb353fa583f6c37581754a5af238540ce4074ad569cb4 | Stan | 4,751 | 145 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
8e80bab2c270dde487ee9af3c7acb2ee2ccaecf9a163159da06fc9dd88ca5869 | Stan | 4,787 | 167 | data {
int<lower=1> N; // Number of subjects
int<lower=1> T; // Maximum number of trials
array[N] int<lower=0> Tsubj; // Number of trials for each subject
int<lower=2> P; // Number of max pump + 1 ** CAUTION **
array[N, T] int<lower=0> pumps; // Number of pump
// int<lower=0> reward[N, T]; // Amount of rew... |
5baa550bb7126b1c86f1431d15e49a631808e2d340de6723dcee231eec58b970 | Stan | 4,931 | 164 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
b27599950e3ee65fdc2a1ecdbf1af980f4cb803a1f075adb6b9190be98b50d7f | Stan | 4,938 | 182 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
bde7ba058b9f71157ccea63baaa52cf70b1be24c9d806c8ee36a5c85eed9aa62 | Stan | 4,990 | 167 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
e859a9274e621664d8f6a39817bddd9fa473bc45017bddae607193aebcc7c6fb | Stan | 5,062 | 174 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
fda903fc1a9c68d88513a2e9dfef2f8d371d7396208e760fd0700ed6e9e489ca | Stan | 5,071 | 177 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
4b707534455d331279be1c0ffe0f9425a38831234985a24930ecc72713b66c92 | Stan | 5,085 | 173 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
7b048ee46c1aa9f8a5bb3c1993c364338e79ec97a510324355f3327b45ec96d2 | Stan | 5,151 | 172 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
dbba9a4eb654d3898073ffdb73469e615ebdb18919ff02f338f9acd766f95f68 | Stan | 5,188 | 201 | // DDM from Pedersen, Frank & Biele (2017) https://doi.org/10.3758/s13423-016-1199-y
functions {
// Random number generator from Shahar et al. (2019) https://doi.org/10.1371/journal.pcbi.1006803
vector wiener_rng(real a, real tau, real z, real d) {
real dt;
real sigma;
real p;
real y;
real i;
... |
5d44126e319af66bbbcc0fa3d0ce0eaff77e8140170ded36afb617238b79ed80 | Stan | 5,286 | 182 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
e3bc3259a5e7e19aa9c8a1e5000bc7246304246365f696797e2357bbb0e26043 | Stan | 5,319 | 178 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
e7a671cb3de0b99afb696cc712a398fdfedb9b192338b035d2bf7967bff1aeda | Stan | 5,441 | 188 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
5d02bdf8dd68c028e9e3cedd5653e84395ff31b36d1c4700357e4ee5270723be | Stan | 5,629 | 186 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
77e157a560b9b18fb136e8d81306b7e84e254c30429ec1e2aae38c4184a554ab | Stan | 5,634 | 178 | data {
int<lower=1> N; // Number of subjects
int<lower=1> T; // Max trials per subject
int<lower=1> B; // Number of bet options
array[N] int<lower=1, upper=T> Tsubj; // number of trials/subject
array[N, T] int<lower=0, upper=2> col_chosen; // chosen color index
array[N, T] int<lower=0, upper=B> bet_chosen; ... |
70b100ceb307a115aa3129c193980d7bc3bf89c7722cfc2af29be50cd41ccff4 | Stan | 5,672 | 202 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
c2993bf9be7b60c520e9cf829e5f913fd97b340991a5b68a9d67cc0cad14bf80 | Stan | 5,677 | 187 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
0465f4554580a9bf51f103bc1d25b94f08fe3a9a35838e48ed24e919c9a28570 | Stan | 5,688 | 189 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
830b9c3155b39ca2cc9c7e6d6a5d2245c799dc0ef96f836c4f38e8e7aad6a4bf | Stan | 5,803 | 186 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
d80db02db84fb4b4ae72e05018854aeec2961548823c9f3321be94861f1a58ce | Stan | 5,860 | 187 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
033c954cdf3a44c49c6b1d123bac077ef01a7e5a24db18ec7edcd6e5fb54f4fe | Stan | 5,869 | 197 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
5d94402fe60764b2797109cd8c705ae1a1a481f1ab32e67553affa003dbe4b32 | Stan | 5,913 | 190 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
10854611121cafbce87ab0e78d05c7b3d90387ece0fe37576a8893ac5ed5b105 | Stan | 5,970 | 191 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
6cc1b543516104eafa4062e488005fa7112c6051fad0276388db491f8f3ee10b | Stan | 6,007 | 197 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
26c2b9008cc64a9c5f0ab7abab8fb4a76c06524cd57c716082ff588b66e85bcb | Stan | 6,092 | 220 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
60980aaabf4a95ffac8a33e9becd70ba7e1330764f73a8211369e642b5b9adc2 | Stan | 6,097 | 195 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
bf3aebefeaf15d9d2c23631d6eebd77d883bfb48b234b61a77cd492820afaf08 | Stan | 6,128 | 196 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
d76d29c685df1b764004f5dc98efc682e03f1718c8a77e6e073388da048a3b09 | Stan | 6,154 | 196 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
e35ea35b832bfc1f5ddf8c8e8e6cd80ad091c9d7f37db7f8e574e6adbbf907ed | Stan | 6,158 | 247 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
a33f8e3906f392d1b4deefdfaf8d345187e695de15579c6baa9b3089cf199b48 | Stan | 6,177 | 183 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
512d7b2fbf674523ede8f2e68daff9ee4d01df45707df7617bd8253fed7c02ae | Stan | 6,458 | 185 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
2ee66dd33951e17fe47a849e4e5a7d98cb406652f45c88981597bb38721a25f1 | Stan | 6,694 | 214 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
e200913fff9eb2889d03286d7a2eb6b378c822267bed068c4faeab9d7437a610 | Stan | 6,735 | 243 | // Model 6 from Pedersen, Frank & Biele (2017) https://doi.org/10.3758/s13423-016-1199-y
functions {
// Random number generator from Shahar et al. (2019) https://doi.org/10.1371/journal.pcbi.1006803
vector wiener_rng(real a, real tau, real z, real d) {
real dt;
real sigma;
real p;
real y;
real ... |
183e46d4f07ca7f9a39e28b46fbb0599e1c212538de46be2bfb09b079ac79c31 | Stan | 6,757 | 215 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
a504e93020cf022bc707964cd57619c5534e23a9274a6a4784ddc56fea9788b0 | Stan | 7,416 | 286 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
c7c805de439c42438fa1b95f2eee3e120f3c0944cfe357049f4c81b056bf8bcb | Stan | 7,468 | 237 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
66443132829c22e13e24587a3e089cc4d5e8bb36c1bc2786c34b789ba9616e37 | Stan | 8,202 | 284 | // Model 6 from Pedersen, Frank & Biele (2017) https://doi.org/10.3758/s13423-016-1199-y
functions {
// Random number generator from Shahar et al. (2019) https://doi.org/10.1371/journal.pcbi.1006803
vector wiener_rng(real a, real tau, real z, real d) {
real dt;
real sigma;
real p;
real y;
real ... |
0a89facfe15d612326e145f59a07a8cded6a053d122fc45ad5efe9c4ecce4386 | Stan | 9,909 | 299 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
b8909f27335c39f72391121141e4bd9a77b08165a0e7838086bda4e539469386 | Stan | 9,913 | 245 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
3754bc0fe140a3f14d07bbfc6e8720cd0a0453c302343daafc9dcbeba8b896d1 | Stan | 10,148 | 254 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
649736ea92ea3a75f32170d6409e72a7c41227d836e4c7e39afcb8ad5ac7a83c | Stan | 10,397 | 260 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
fe9a32a5c2090e82ce1b03ad8ee769d645e30b04e15d16092e5201681c16f64a | Stan | 12,826 | 384 | /*
hBayesDM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
hBayesDM is distributed in the hope that it will be useful,
... |
bc4bca27eebf2f175ded597073653226909517300e8afa5750f7135ff8202180 | Text | 5 | 1 | # GNN |
5a289e05764de8dec620329ec846efd2dcd04e4ffc2f643457a3fca6e0f91f87 | Text | 16 | 1 | # SSP-SIR_vs_ICA |
b0a6d273ec9c9a76f9fc7f3589595080a26034a67e365c772a502459915c1da7 | Text | 20 | 1 | # brainage_testsets |
8b586df99e8493245d6da1ec005595a4a02cbc3002d1f0ab0e6792511ce6bf5e | Text | 22 | 1 | # covid-placenta-edlow |
4e38f373aefc9f52f5e1ac75846b19ea1bc4ea354b5d13566b38284a37312138 | Text | 36 | 2 | # NKK
Neural network kinetics - NNK
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c083f76b55fa2f56b2908e7a0c4bbd2c5fb331edc364f1252f22ade8df0bb8b0 | Text | 41 | 2 |
### The code is created by JianhuaYuan
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0b2ba9e660755569e9ed69654af192b5f7d02c15f183620a6dd9855beeae452e | Text | 53 | 1 | # Analysis scripts for the FaceName-Brain manuscript
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18561a867c7830d3972ae13ba258824e17081a094fddcf640b98f01320152669 | Text | 53 | 2 | # fms
Code for familiarity modulated synapses paper.
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9019fccb48b78e4df409659eb79ae8f927f84b9fd958bc291f14fed47db87b9b | Text | 59 | 1 | A suitable Python envirnoment can be installed via Docker
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07e40aaf820aa812f9d378b8c7d26b39f26b4e9fee2bf51a85878f3c51517f72 | Text | 80 | 2 | # AmortizedHMM
Hybrid HMM-DNN method for calling methylation from nanopore data
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f746bca4a4ae32abb288d6cb13ad60aa5ebc1093d3f203075da639d2f8a39f59 | Text | 89 | 3 | # QTNet
https://journals.plos.org/digitalhealth/article?id=10.1371/journal.pdig.0000539
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c05af6147410b09fa542157245527ddc0c3982fed5e2327dc0e4f85bba0c89df | Text | 95 | 2 | # Frechou-et-al-2023
Repository containing code for analysis of data in Frechou, et al., 2023.
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2256fc7edd77aaaebc3b46dd51a43895a41ac60ad010adfc7e2f30a1bedf26e2 | Text | 97 | 5 | # allen-tracer-download
Created by Aran T.B. van Hout, 2022-2023
Please refer to the LICENSE.md |
29c6c33b897cb11fefc419a033e3290b9ea342d32646697cafabf5ac10438e64 | Text | 97 | 1 | [](https://zenodo.org/doi/10.5281/zenodo.10993299)
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a0b84fd28f6149a92512ebdb5ba8d73e56229cd4a7d17561504def08eb6570bc | Text | 97 | 3 | # bci-motor-imagery
[final notebook](./notebooks/eeg_final.ipynb) but nothing is good enough :(
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22c971a4e7054332011982dcd0ac61f4ae1a715cc48667c6674df0f68d9e6948 | Text | 100 | 3 | # Lim and Lee, PLOS Biology, 2024
Code for analyzing neural data and creating figures (Fig 4-7)
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bd6f68be03dae26ea9a063ded0633a948494f5033bce55201ad498f10502bff0 | Text | 108 | 2 | # SequenceSuperResolution
Perform Seismic Resolution Improving by a Sequential Convolutional Neural Network
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d4e57d0c4585ab0db8fdaa9a48cf09eaa6b11c4c979f7925598b313228dccd1c | Text | 108 | 2 | # SpatialPrompt
## Scalable and efficient cell type deconvolution and clustering in spatial transcriptomics |
820afa84601b6f4a6468c3640ab8ebdcc7612a116de0137b2c0fa57904513d13 | Text | 109 | 4 | Welcome to MTBA Toolbox !
1. Windows Version of Toolbox - mtba-win
2. Linux Version of Toolbox - mtba-nix |
574a9d0b1502cc058548c164505097dd89a0125f6919a772ec256136740c8f6d | Text | 111 | 2 | # phoenix
PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics
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1a71b4feecb96abf60f25643c5e768c97b67e5c3207b1ec256947b4de726466a | Text | 118 | 2 | # IncompleteLetters
Code to generate incomplete letter stimuli, as used in the Graded Incomplete Letters Test (GILT)
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53389fbfef7fafd014b681da9dbf3983e357f29a76641d0f1ce407db7d15d343 | Text | 120 | 4 | # haussmeister
Handling 2-photon imaging datasets in Python
[Documentation](https://neurodroid.github.io/haussmeister)
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76d0df584e0a9407c592c141b53644cf7b8fcddf22e9f2465c481055ae5c5766 | Text | 124 | 2 | ## NST: A Novel Machine-Learning Algorithm for Predicting the Reason for Termination of Nutritional Support Team Follow-Up
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da22ac32f69fe78d41402582fa2454f94050ee9bf7be7f383b9f6bfa58b92a91 | Text | 128 | 2 | ## License
The code and models in this repo is released under the [CC-BY-NC license](LICENSE.md) for <b>non-commercial</b> use.
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5e6e16d1c469516a4c24bc97c773a122772d7b8dc488fa79ec39c06cd502c36f | Text | 131 | 4 | # WDNN
2.zip ------- source code.
4941.zip,22962.zip, nm.zip, tw(tw01.zip, tw02.zip,tw03.zip, tw04.zip,tw05.zip)--------- dataset
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d22207706da4c878064f99b529f125148beabb5a4cf7d9452b12e0323a9e2a04 | Text | 135 | 2 | # Spinal_NET
Original code for "Ultraflexible Electrodes for Recording Neural Activity in the Mouse Spinal Cord during Motor Behavior"
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465390fed3a7260339adda8319c0eb0cfb12014fa5802fd9c0ee129f2e4b1e68 | Text | 139 | 2 | # SocialVectorCell-Public
Codes and sample data of "Multiplexed representation of others in the hippocampal CA1 subfield of female mice".
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c94290574f1a6f826a79f5500a5a9b557fe1593c3886c5f305e1757254364ddc | Text | 148 | 2 | # KINNTREX - Kinetically Inspired Neural Network for Time Resolved X-ray Imaging
This repository contains the latest code for the KINNTREX software
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7d89d8219dd46510933cdb59723d1762e6943c382f1c60c90c431991b76bc387 | Text | 150 | 2 | # onubogu_spatial_analysis_of_recurrent_glioblastoma
Code used in Spatial analysis of recurrent glioblastoma reveals perivascular niche organization.
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9d83a65f9f86d221976177cbb1bd57f56f712bb8208eb7bcd5e66f0236bf5278 | Text | 152 | 3 | # RETROICORplus
**DISCLAIMER: This tool was intended for internal usage only. It is made public for reproducibility reasons. No support is provided.**
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73567726e6e83da8f7436742d05e7fd9798d5eaef4580fc16ad093f757fba8ad | Text | 162 | 4 | # DriftReg
Code for Representational drift as a result of implicit regularization.
Ratzon et al. eLife 2023;12:RP90069. DOI: https://doi.org/10.7554/eLife.90069
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c1e3a889bb58668098da2a59f731ffe4b813b2bffdf837e85022239fe25643f1 | Text | 167 | 8 | Install requirements
run: pip install -r requirements.txt
For TCNformer classification model
run: python tcnformer.py
For TDC cluster model
run: python tdc.py |
740e15bb7916322371a45f63ab2d88c789b7bfe25873af3c0ab6a12ee1fa83db | Text | 171 | 2 | # mcDESPOT_FWF_MS
A collection of bash and matlab scripts to correlate brain parenchyma free water fraction to lesion load and cognitive impariment in multiple sclerosis.
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4be6005aa36227dbedd97d02d58563eed26d00f861618b7bf96050079200cd45 | Text | 172 | 4 | # NNICE - Neural network immune contexture estimator
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8ae83cdde32c84b75a8244fd53bceaccdfbb6e5ef6426a5dd03f9b1e85559d01 | Text | 174 | 2 | # Rhythm_recep
The original code for the analysis of ""(Hirokane et al., "Rhythm Receptive Fields in Striatum of Mice Executing Complex Continuous Movement Sequences", 2023)
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d53c998b5c332e8a13bfd45aa61cd48c3d82599a2c50abe8bc3828c940a47b28 | Text | 176 | 7 | # colorful-medulla
This code repository contains the custom data and modeling pipelines written for the paper
## Zenodo link for raw data
https://zenodo.org/records/10720630 |
a01af47754e65f72bf02cd5d09fd21d8b890a3e2891b017c641f29bb43eda149 | Text | 178 | 11 | # Codes for Manuscript
This repository contains the code used in the MEnet paper.
## MEnet
MEnet is available here https://github.com/yyoshiaki/MEnet
## Data
## Publication
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b3f10caf970918569ccd98ec675b9c42ea83ecabe4aa3f1e16ed349cfb0539ba | Text | 180 | 4 | # rna_velocity_analysis
Single cell RNA seq velocity analysis.
The workflow starts from Step1_&_2_RnaVelocity.R.
All necessary packages are listed in Step1_&_2_RnaVelocity.R file.
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69b17d4f8bbc0a2133cd6e72bba19113089770914ef9260abd0581d46f9698a8 | Text | 185 | 2 | # PathogensRamanOpenSet
Notebooks for our paper: "Enhancing Open-World Bacterial Raman Spectra Identification by Feature Regularization for Improved Resilience against Unknown Classes"
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46e50a39c1943a932523615c57714a2cecc39cdae5fc0293086f7a4deff2972f | Text | 188 | 3 | # ModellingSuperTetbow
Codes used to model super-tetbow in n dimensions. Used to evaluate the percent discriminable and the percent unique
Check out the ReadMe docx file for more details
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65ff2d90fee5d675ac09930757e73d61d88ddda7e6aab919785fb80b8f2be914 | Text | 189 | 8 | # 0. Requirements
In order to build the ecosystem and run the experiment you need to install first
- Ubuntu 20.04 or greater
# 1. How to build and run the experiment
bash go
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