sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
5ab425c94dd260cfd1767685669a19c57b1ce8661ab583c00ee14abb5c41467b | Java | 3,706 | 109 | package fiji.plugin.DOM;
import java.io.FileInputStream;
import java.io.InputStream;
import javax.xml.stream.XMLInputFactory;
import javax.xml.stream.XMLStreamReader;
import ij.IJ;
import ij.Prefs;
import ij.gui.GenericDialog;
import ij.plugin.PlugIn;
public class Import_TrackMate implements PlugIn {
SMLAnal... |
fccefef7eec2df127a7d2635416a347304fff746f07c8c8112176bbab1608c3b | Java | 3,708 | 122 | package org.jeecg.modules.monitor.service.impl;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Properties;
import javax.annotation.Resource;
import cn.hutool.core.date.DateUtil;
import com.alibaba.fastjson.JSONArray;
import com.alibaba.fastjson.JSO... |
ebef034cf8c773c9fe13fde81d9b6ac112c5858290db7829c41235e58fda4e19 | Java | 3,722 | 117 | package org.jeecg.modules.system.controller;
import java.util.Arrays;
import javax.servlet.http.HttpServletRequest;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.system.query.QueryGenerator;
import org.jeecg.common.util.oConvertUtils;
import org.jeecg.modules.system.entity.SysLog;
import org.jeecg.... |
4dd2a932a6ad93a10d057661803e09fbee87838bd570b8759b40956f04adb721 | Java | 3,725 | 131 | package fiji.plugin.DOM;
import ij.IJ;
import ij.plugin.PlugIn;
public class LoadDriftCorrection implements PlugIn
{
SMLAnalysis sml = new SMLAnalysis();
/** x coordinates of particles in nm*/
double [] x;
/** y coordinates of particles in nm*/
double [] y;
/** frame numbers of particle*/
double [] f;
@Overr... |
b2d9b2ed48462fda3ddd4b3880bec8800c1e8ab822b4c3de045af29e19debba7 | Java | 3,766 | 84 | package org.janelia.colormipsearch.dao.mongo;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import org.janelia.colormipsearch.dao.NeuronMatchesDao;
import org.janelia.colormipsearch.dao.NeuronMetadataDao;
import org.janelia.colormipsearch.model.AbstractNeuronEntity;
import org.janel... |
1fc38856e89e588fbef685e2b8265d4750943bf81caec2296dcdb7d784c22595 | Java | 3,768 | 131 | package fiji.plugin.DOM;
import java.util.Arrays;
import ij.IJ;
import ij.plugin.PlugIn;
public class DriftCorrection implements PlugIn{
SMLDialog dlg = new SMLDialog();
SMLAnalysis sml = new SMLAnalysis();
SMLReconstruct smlViewer;
@Override
public void run(String arg)
{
String imagename;
double []... |
644506843b383150fddf3ce7bcb03fba4e65aa37d73b59cb224dd219870c2f90 | Java | 3,807 | 118 | package org.jeecg.modules.monitor.controller;
import com.alibaba.fastjson.JSONArray;
import lombok.extern.slf4j.Slf4j;
import org.jeecg.common.api.vo.Result;
import org.jeecg.modules.monitor.domain.RedisInfo;
import org.jeecg.modules.monitor.service.RedisService;
import org.springframework.beans.factory.annotation.Aut... |
cfebe12532b092b669bf42c24ddf52daaf3f68421546f353bc7ca8d1ee8dd012 | Java | 3,822 | 85 | package org.janelia.colormipsearch.cmd.jacsdata;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.concurrent.ConcurrentHashMap;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
impo... |
28a7fea43a025120e0ca99600f4ef36322482efde1ca194763a3a380afaa22c4 | Java | 3,823 | 94 | package org.janelia.colormipsearch.imageprocessing;
import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.io.UncheckedIOException;
import ij.ImagePlus;
import ij.io.Opener;
import ij.process.ImageProcessor;
import org.junit.Assert;
import org.junit.Te... |
f529a6477e352ba6cfce279aaee5efb6d378b98bc2ff1f58ce96a336c57de4c7 | Java | 3,852 | 90 | package org.janelia.colormipsearch.cmd;
import java.util.List;
import com.beust.jcommander.JCommander;
import com.beust.jcommander.Parameter;
import org.apache.commons.lang3.StringUtils;
/**
* Entry point for some NeuronBridge tools.
*/
public class Main {
private static class MainArgs {
@Parameter(n... |
f6aeca51ebc274a231168b49c2eaccd7fdfd36a24fbf38c30db7a87dd0a63fdf | Java | 3,867 | 91 | package org.janelia.colormipsearch.dataio;
import java.util.Collection;
import java.util.List;
import org.janelia.colormipsearch.datarequests.ScoresFilter;
import org.janelia.colormipsearch.datarequests.SortCriteria;
import org.janelia.colormipsearch.model.AbstractMatchEntity;
import org.janelia.colormipsearch.model.... |
6a40928e6f6a8505a98284462f0eba3161fb3079dcb38921126031381ba2d2a5 | Java | 3,875 | 95 | package org.janelia.colormipsearch.imageprocessing;
import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.io.UncheckedIOException;
import java.nio.file.Files;
import ij.ImagePlus;
import ij.io.Opener;
import ij.process.ImageProcessor;
import org.junit... |
fc346244a5db41028a601a40707284df34d90e4d3daa5de9ce28ed79797483d7 | Java | 3,882 | 91 | package org.janelia.colormipsearch.dataio.fs;
import java.nio.file.Path;
import java.util.Collections;
import java.util.Comparator;
import java.util.List;
import java.util.function.Function;
import com.fasterxml.jackson.databind.ObjectWriter;
import org.apache.commons.lang3.tuple.Pair;
import org.janelia.colormipsea... |
05bdc4ff2656bb0da59d0b3edaa71bb644f8dda7229f53c0f08f6b06703419eb | Java | 3,885 | 114 | package org.jeecg.modules.cas.controller;
import java.util.List;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import cn.hutool.crypto.SecureUtil;
import org.apache.commons.lang.StringUtils;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.constant.CacheCo... |
cf7368d441a6bcf68270893f07049c484e641c3494612bf6ada8e38b05dce8a8 | Java | 3,944 | 114 | package fiji.plugin.DOM;
import ij.IJ;
import ij.ImagePlus;
import ij.Prefs;
import ij.gui.GenericDialog;
import ij.plugin.PlugIn;
import ij.process.ImageProcessor;
/**
* old DOM format (less than v.1) reverse compartibility
*
* */
public class Load_Particles implements PlugIn{
ImagePlus imp;
ImageProcessor ip... |
903b5d745a95f04f1904bb3853ff3ceab20c0e97fd64ef2fa3f283e61ccc1ba1 | Java | 3,946 | 105 | package fiji.plugin.DOM;
import ij.IJ;
import ij.ImagePlus;
import ij.Prefs;
import ij.gui.GenericDialog;
import ij.io.SaveDialog;
import ij.plugin.PlugIn;
import ij.process.FloatProcessor;
import ij.process.ImageProcessor;
/**
* old DOM format (less than v.1) reverse compartibility
*
* */
public class Save_Part... |
504cde848990a12db5d8d4c0866ee7143b963ced0ddd3d9377d0e094fc6b3943 | Java | 3,955 | 142 | package org.janelia.colormipsearch.dto;
import java.util.HashMap;
import java.util.Map;
import javax.validation.constraints.NotNull;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonProperty;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.... |
ea7b1123a34a16167238e9ed8ea1997580d26262fc537d03ceafb021a40d1ba5 | Java | 3,995 | 89 | package org.janelia.colormipsearch.cmd.jacsdata;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.concurrent.ConcurrentHashMap;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
impo... |
9fb445f39a9d3671a3ce88f6ecb66f2d3419084e1811de801932519c16b08561 | Java | 3,997 | 105 | package org.janelia.colormipsearch.cmd;
import java.util.concurrent.ExecutionException;
import com.google.common.cache.CacheBuilder;
import com.google.common.cache.CacheLoader;
import com.google.common.cache.LoadingCache;
import org.apache.commons.lang3.builder.EqualsBuilder;
import org.apache.commons.lang3.builder.... |
7328659fc08abe60a2aa4fe795ed04c67b4607dd89a1a381077394078d01b08c | Java | 4,018 | 110 | package org.janelia.colormipsearch.cmd_v2;
import java.io.File;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.List;
import java.util.concurrent.Executor;
import java.util.concurrent.Executors;
import ... |
3d265228c6026e127f25c4a3084ff5fa5c07383c5a9a1c94720052f63bc0931d | Java | 4,049 | 88 | package org.janelia.colormipsearch.dao;
import com.mongodb.client.MongoClient;
import com.mongodb.client.MongoDatabase;
import org.janelia.colormipsearch.config.Config;
import org.janelia.colormipsearch.dao.mongo.CDMatchesMongoDao;
import org.janelia.colormipsearch.dao.mongo.MatchSessionMongoDao;
import org.janelia.c... |
4229c21b1167234555de3796a3bac54fb76978267e62ab9d7ca41e8b237fb9c9 | Java | 4,049 | 97 | package org.janelia.colormipsearch.cmd;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import java.util.stream.Collectors;
import com.beust.jcommander.IStringConverter;
import com.beust.jcommander.IValueValidator;
import com.beust.jcommander.ParameterExcepti... |
14a22ce6ce2b019caacddd4abc5062c190eee6159f9c376d19f16e70a762a8a1 | Java | 4,083 | 187 | package org.jeecg.modules.system.entity;
import com.baomidou.mybatisplus.annotation.IdType;
import com.baomidou.mybatisplus.annotation.TableId;
import com.baomidou.mybatisplus.annotation.TableLogic;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.... |
c412f92aa75c4917f55d2f9034394b977f1f5910ab3339c90651f52eef7438d4 | Java | 4,100 | 145 | package org.jeecg.modules.message.controller;
import java.util.Arrays;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.system.base.controller.JeecgController;
import org.jeecg.common.system.query.QueryGenerato... |
570bc8a1914abe2a2a58feda206a613c104bcf9f1baeda033f81d3daaee1e3a5 | Java | 4,107 | 127 | package org.janelia.colormipsearch.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import org.apache.commons.lang3.StringUtils;
import org.janelia.colormipsearch.cds.GradientAreaGapUtils;
import org.janelia.colormipsearch.dto.AbstractNeuronMetadata;
import org.janelia.colormipsearch.dto.CDMatchedTarget;
im... |
930e242b740059539ca9160c88f925026c874d7c41f920a02ea53d526861d504 | Java | 4,116 | 144 | package org.jeecg.modules.system.mapper;
import com.baomidou.mybatisplus.core.conditions.Wrapper;
import com.baomidou.mybatisplus.core.metadata.IPage;
import com.baomidou.mybatisplus.core.toolkit.Constants;
import com.baomidou.mybatisplus.extension.plugins.pagination.Page;
import org.apache.ibatis.annotations.Param;
i... |
8c4b0b1c5a3d9d65531b7ed5024b6d4d43c8817eda06a731cc8ed4a698f1604f | Java | 4,156 | 98 | package org.jeecg.modules.system.service.impl;
import com.alibaba.fastjson.JSON;
import com.alibaba.fastjson.JSONArray;
import com.alibaba.fastjson.JSONObject;
import com.baomidou.mybatisplus.core.conditions.query.LambdaQueryWrapper;
import com.baomidou.mybatisplus.extension.service.impl.ServiceImpl;
import org.apache... |
1b60c133771674bc307f3f0f23b0897a12e7dfe3a908f7bdc4ff81f69469f0af | Java | 4,177 | 98 | package org.janelia.colormipsearch.cmd;
import java.util.List;
import com.beust.jcommander.JCommander;
import com.beust.jcommander.Parameter;
import org.apache.commons.lang3.StringUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Entry point for some NeuronBridge tools.
*/
public class Main {
... |
d7cc10e1b4cb1408f30e9b9b20742cc7ff10741ceeedc347fbb1239493e64913 | Java | 4,181 | 86 | package org.janelia.colormipsearch.cmd.cdsprocess;
import java.util.Map;
import java.util.Set;
import java.util.function.Supplier;
import javax.annotation.Nonnull;
import org.janelia.colormipsearch.cds.ColorDepthSearchAlgorithm;
import org.janelia.colormipsearch.cds.ColorMIPSearch;
import org.janelia.colormipsearch.... |
986daabad5c2cfca9dc9799dc72808254ff8bee19b358a1f2970a11f4801fba4 | Java | 4,196 | 94 | package org.jeecg.modules.system.rule;
import com.alibaba.fastjson.JSONObject;
import com.baomidou.mybatisplus.core.conditions.query.LambdaQueryWrapper;
import io.netty.util.internal.StringUtil;
import org.jeecg.common.handler.IFillRuleHandler;
import org.jeecg.common.util.SpringContextUtils;
import org.jeecg.common.u... |
33abeb46e48e510f16ef7120fa7b13d7fa289a08546466c164676e39293f622b | Java | 4,210 | 156 | package org.janelia.colormipsearch.imageprocessing;
import java.util.function.BiFunction;
/**
* Lazy Image data type
*/
public interface LImage {
/**
* @return pixel type
*/
ImageType getPixelType();
/**
* Get the pixel value at the given positions
* @param x position
* @param... |
7738f07395876642e0d65fe690af8132314e5465d7e0a1cab9c32964f6d6969f | Java | 4,225 | 143 | package org.jeecg.modules.message.websocket;
import java.util.HashMap;
import java.util.Map;
import java.util.concurrent.CopyOnWriteArraySet;
import javax.annotation.Resource;
import javax.websocket.OnClose;
import javax.websocket.OnMessage;
import javax.websocket.OnOpen;
import javax.websocket.Session;
import javax.... |
7c9027ef188c017c59d3e2c856acc88225b49b58bead5f562448ab2fc76fa329 | Java | 4,234 | 112 | package org.janelia.colormipsearch.cmd;
import java.util.concurrent.ExecutionException;
import com.google.common.cache.CacheBuilder;
import com.google.common.cache.CacheLoader;
import com.google.common.cache.LoadingCache;
import org.apache.commons.lang3.builder.EqualsBuilder;
import org.apache.commons.lang3.builder.... |
cd0748bb94e4ae642d268cc74aea7b0aa56c92bf2471c33e323a9c04ee863491 | Java | 4,258 | 87 | package org.janelia.colormipsearch.cmd.cdsprocess;
import java.util.Map;
import java.util.Set;
import java.util.function.Supplier;
import javax.annotation.Nonnull;
import org.janelia.colormipsearch.cds.ColorDepthSearchAlgorithm;
import org.janelia.colormipsearch.cds.ColorMIPSearch;
import org.janelia.colormipsearch.... |
436b4885585670e1cae1fc912496d1c5bd45c27560097a030b24360846c4bcc2 | Java | 4,275 | 135 | package org.jeecg.modules.system.mapper;
import java.util.List;
import java.util.Map;
import com.baomidou.mybatisplus.core.metadata.IPage;
import com.baomidou.mybatisplus.extension.plugins.pagination.Page;
import org.apache.ibatis.annotations.Param;
import org.apache.ibatis.annotations.ResultType;
import org.apache.i... |
960fe2525105a66eb5a3932fae8ed8774b5ffe8a43a0458fa8e28780c562558e | Java | 4,280 | 143 | package org.janelia.colormipsearch.model;
import java.util.ArrayList;
import java.util.List;
import com.fasterxml.jackson.annotation.JsonIgnore;
import org.janelia.colormipsearch.dto.LMNeuronMetadata;
import org.janelia.colormipsearch.model.annotations.DoNotPersist;
public class LMNeuronEntity extends AbstractNeuro... |
e6d0706d8433957205f8bc89a6376951b897084cd8bac370f40140a8c97f0da1 | Java | 4,300 | 135 | package org.janelia.colormipsearch.dao.mongo;
import java.util.ArrayList;
import java.util.Date;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonProperty;
import c... |
17cb086fd06da253353fe7a5638fef3a899b8e2d0cd21897b4558e4fc4aa6065 | Java | 4,308 | 122 | package cn.sdaict.fldatauploader.utils;
import org.springframework.stereotype.Service;
import java.io.*;
import java.util.Iterator;
import java.util.LinkedHashMap;
import java.util.List;
import java.util.Map;
@Service
public class CsvFileUtil {
public static File createCSVFile(List<Object> head, List<LinkedHash... |
09bf588203486ec0f47848cfd8708e692dde830c05a4faee333983cd6bdf9051 | Java | 4,321 | 116 | package org.jeecg.modules.system.service.impl;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import javax.annotation.Resource;
import org.jeecg.common.constant.CommonConstant;
import org.jeecg.common.system.query.QueryGenerator;
import org.jeecg.common.util.oConvertUtils;
import org.jeecg.mo... |
93db4bf5bfd7fb6feee0d651bc80904fa5c9d5b2a29b3094bead159530cbd35b | Java | 4,325 | 137 | package org.janelia.colormipsearch.dao;
import java.util.Collection;
import java.util.HashSet;
import java.util.Set;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.builder.ToStringBuilder;
import org.janelia.colormipsearch.datareque... |
0514bddf407395eedd98b97b6a6c7238f6f3bdbc01d90ef7f2b5c1d56c875adc | Java | 4,339 | 161 | package fiji.plugin.DOM;
import java.io.BufferedReader;
import java.io.FileNotFoundException;
import java.io.FileReader;
import java.io.IOException;
import ij.IJ;
import ij.gui.GenericDialog;
import ij.io.OpenDialog;
import ij.io.SaveDialog;
import ij.plugin.PlugIn;
public class Import_MTrackJ implements PlugIn {
... |
6ca2a909f9b753c3ed1b0c0a9084d13979ee873d62143a3a19908addb0b59e19 | Java | 4,352 | 137 | package org.jeecg.modules.system.entity;
import com.baomidou.mybatisplus.annotation.IdType;
import com.baomidou.mybatisplus.annotation.TableId;
import com.baomidou.mybatisplus.annotation.TableName;
import com.fasterxml.jackson.annotation.JsonFormat;
import lombok.Data;
import org.jeecg.common.aspect.annotation.Dict;
i... |
a98e74aabd1dd47ad15192d69a20be7a90df8466442eeafb6b68c8ac03df193d | Java | 4,384 | 96 | package org.jeecg.modules.quartz.job;
import io.fabric8.kubernetes.api.model.Node;
import io.fabric8.kubernetes.api.model.NodeCondition;
import io.fabric8.kubernetes.api.model.metrics.v1beta1.NodeMetrics;
import io.fabric8.kubernetes.api.model.metrics.v1beta1.NodeMetricsList;
import io.fabric8.kubernetes.client.Defaul... |
ea6a5a354f8c5b2d4d8e47f7773f9c9b3021ff1cd5d862bd2913431373af062c | Java | 4,391 | 145 | package org.jeecg.modules.federalml.controller;
import java.util.Arrays;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.aspect.annotation.AutoLog;
import org.jeecg.common.system.base.controller.JeecgControlle... |
b47b3fc21c6556956b4320f4ff29f8f69583703c74e389c7177a2cb0acdbd49d | Java | 4,433 | 117 | package org.janelia.colormipsearch.cmd;
import java.nio.file.Path;
import java.util.Set;
import java.util.function.BiPredicate;
import javax.annotation.Nullable;
import com.beust.jcommander.Parameter;
import org.apache.commons.lang3.StringUtils;
import org.janelia.colormipsearch.imageprocessing.ImageRegionDefinitio... |
fa2c27ea6448203a298b05122262e4aaf6b7ffabc1a764b016070e5422dca6fd | Java | 4,508 | 84 | package org.janelia.colormipsearch.cmd.cdsprocess;
import java.io.Serializable;
import java.util.Collection;
import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import com.google.common.collect.Lists;
import org.apache.spark.SparkConf;
import org.apache.sp... |
d0b9f55af22a6c851d9af6593161d1b2e82256f956b210801ba84c22143e9cd1 | Java | 4,513 | 130 | package org.janelia.colormipsearch.dataio.fs;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.OutputStream;
import java.io.RandomAccessFile;
import java.io.UncheckedIOException;
import java.nio.channels.Channels;
import java.nio.file.Path;
import java.util.List;
import ... |
c876f6927689838a37b9ffe316113a316de937cf7a81cb9218aa0f2e79aef128 | Java | 4,534 | 106 | package org.jeecg.modules.system.service.impl;
import com.baomidou.mybatisplus.core.conditions.query.LambdaQueryWrapper;
import org.jeecg.common.constant.CommonConstant;
import org.jeecg.common.util.PasswordUtil;
import org.jeecg.common.util.UUIDGenerator;
import org.jeecg.common.util.oConvertUtils;
import org.jeecg.m... |
c1c69a0dd5bb4a0f3a3a6139ddc50cd24aa60968d2682259e9f399120a6b0994 | Java | 4,562 | 94 | package org.janelia.colormipsearch.dao;
import com.mongodb.client.MongoClient;
import com.mongodb.client.MongoDatabase;
import org.janelia.colormipsearch.config.Config;
import org.janelia.colormipsearch.dao.mongo.CDMatchesMongoDao;
import org.janelia.colormipsearch.dao.mongo.MatchSessionMongoDao;
import org.janelia.c... |
f4ae7591e3c84c1cfc108ee61f312c49124468a09e6e04ef66f55d1e7f53aaf2 | Java | 4,566 | 132 | package org.janelia.colormipsearch.dataio.fs;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.OutputStream;
import java.io.RandomAccessFile;
import java.io.UncheckedIOException;
import java.nio.channels.Channels;
import java.nio.file.Path;
import java.util.Collection;
i... |
3d8be8383ab82073eabcea3dcd7ebce7c2c15e1e7b8f1290125dda9ada2391af | Java | 4,582 | 107 | package org.janelia.colormipsearch.cmd_v2;
import java.util.List;
import com.beust.jcommander.JCommander;
import com.beust.jcommander.Parameter;
import org.apache.commons.lang3.StringUtils;
/**
* Entry point for some NeuronBridge tools.
*/
public class Main {
private static class MainArgs {
@Paramete... |
6570578899225b342d2e790c8cb214acfef427380514ac81ccf2e9a1b48e5d53 | Java | 4,599 | 148 | package org.jeecg.modules.federalml.controller;
import java.util.Arrays;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.aspect.annotation.AutoLog;
import org.jeecg.common.system.base.controller.JeecgControlle... |
48984ec0875c71fa248da035cc276e87b5613e596c3d93cf00c01be06c68d9c6 | Java | 4,614 | 121 | package org.janelia.colormipsearch.cmd;
import java.nio.file.Path;
import java.util.Set;
import java.util.function.BiPredicate;
import javax.annotation.Nullable;
import com.beust.jcommander.Parameter;
import org.apache.commons.lang3.StringUtils;
import org.janelia.colormipsearch.imageprocessing.ImageRegionDefinitio... |
54613b4368deb3b8da573ee53b186b2161617ff55f0897f96507da5abcf3c48f | Java | 4,623 | 140 | package org.jeecg.modules.system.util;
import javax.imageio.ImageIO;
import javax.servlet.http.HttpServletResponse;
import java.awt.*;
import java.awt.image.BufferedImage;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.Base64;
import java.util.Random;
/**
* 登录验证码工具类
*/
public cla... |
cdc18dfbb020de8ed7c0fdf73f07432d96dd372f3a04b95ce1e67b72a1eb65d0 | Java | 4,637 | 242 | import java.awt.*;
/**
* A Gel of a biological experiment
* @author Guillaume Arras (Guillaume.Arras@curie.fr)
* @version 15/05/2009
*/
public class Gel {
//Parameters
private Spot [] legel;
private String name;
//Constructor
public Gel(){
legel = null;
name = null;
}
public Gel(String name){
legel ... |
a52bd00dfbfb1135e1f03006b1d7eb884fd21354fb7c78885a8fe43fe78443b0 | Java | 4,665 | 128 | package jaolho.data.lma;
import java.util.Arrays;
/**
* Implement this <i>multidimensional</i> function y = (x[], a[]) for your fit purposes.
* Used with <code>LMAMultiDim</code>. For simpler, one dimensional fit functions you can use
* <code>LMAFunction</code> with <code>LMA</code>.
*
* @author Janne Holopaine... |
f4cc5c670f90c67c2f40389d8ab7da10412b5d7339b750cb4dbce3bd52a00bd2 | Java | 4,707 | 93 | package org.janelia.colormipsearch.cmd.jacsdata;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org.janelia.colormipsearch.dao.PublishedLMIm... |
c953b7bbc6bb32bf6aec445ac34394fc18414931db4057a9ce8dee85261f275e | Java | 4,723 | 175 | import javax.swing.*;
import java.awt.*;
import java.util.*;
import java.awt.image.*;
import java.awt.Graphics2D;
/**
* Class that handle the graphic composant of the Panel
* @author Guillaume ARRAS (Guillaume.Arras@curie.fr)
*
*/
public class ImagePanel extends JPanel implements Observer{
// Parameters
private ... |
2bec6eb88151aabf29bf97599749725210b803749744f8fffb1e3d5018510a69 | Java | 4,748 | 156 | package org.janelia.colormipsearch.model;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.nio.file.Path;
import java.nio.file.Paths;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.databind.annotation.JsonDeserialize;
import com.fasterxml.jackson.databind.... |
30ae16219d42883ddfcda75a15ac32b1ed9f4ca44a4911bc67f05d944c2fb92b | Java | 4,777 | 149 | package org.jeecg.modules.federalml.controller;
import java.util.Arrays;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.aspect.annotation.AutoLog;
import org.jeecg.common.system.base.controller.JeecgControlle... |
d6430c0d76b385e1e152359e5c54aa4ade5396048f69b3dda6d29176e0c2bd16 | Java | 4,806 | 130 | package org.jeecg.modules.system.util;
import org.jeecg.common.constant.CommonConstant;
import org.jeecg.common.util.RedisUtil;
import org.jeecg.common.util.oConvertUtils;
import org.jeecg.modules.system.entity.SysDepart;
import org.jeecg.modules.system.model.DepartIdModel;
import org.jeecg.modules.system.model.SysDep... |
3d7563a83823d8af9099175b2760394eda7c37c13d6cfb93412bcbc158efe368 | Java | 4,843 | 132 | package org.janelia.colormipsearch.dao;
import java.math.BigInteger;
import java.net.InetAddress;
import java.net.UnknownHostException;
import java.nio.ByteBuffer;
import java.nio.channels.FileChannel;
import java.nio.channels.FileLock;
import java.nio.file.Paths;
import java.nio.file.StandardOpenOption;
import java.u... |
8844eab618bb6f3c14eb653378b211f9f2d7783ca12aeb08bb12fd26db8819c7 | Java | 4,856 | 190 | package fiji.plugin.DOM;
import java.util.Arrays;
import java.util.Comparator;
import ij.IJ;
import ij.Prefs;
import ij.gui.GenericDialog;
import ij.plugin.PlugIn;
class tableComparator implements Comparator<double []> {
private int columnToSortOn;
private boolean ascending;
//contructor to set the c... |
6668ab375418dd322b48ffc7237b1b7441b125d8622ada6a5d9bd80ca6021cdf | Java | 4,862 | 133 | package org.jeecg.modules.system.service.impl;
import java.util.ArrayList;
import java.util.List;
import java.util.stream.Collectors;
import java.util.stream.Collectors;
import com.baomidou.mybatisplus.core.conditions.Wrapper;
import org.jeecg.common.util.oConvertUtils;
import org.jeecg.modules.system.entity.SysDepar... |
cfaa2cca1a60dbd2b1dcfd154d15182627b2d3483f7ea9b1d27dfbf6b8fe77d7 | Java | 4,876 | 111 | package org.jeecg.modules.system.service.impl;
import com.baomidou.mybatisplus.core.conditions.query.LambdaQueryWrapper;
import com.baomidou.mybatisplus.core.conditions.query.QueryWrapper;
import org.jeecg.common.util.oConvertUtils;
import org.jeecg.modules.system.entity.SysDepartPermission;
import org.jeecg.modules.s... |
6f95eee992b6b31d51498bd0eb57f36fa8dc70aee9799dab2d294b9afd3e7b85 | Java | 4,911 | 95 | package org.janelia.colormipsearch.cmd.jacsdata;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org.janelia.colormipsearch.dao.PublishedLMIm... |
6a780367972104169c14ba8e993ddcc2fab4d4fa2b74d4f5db8afdbbf14b6949 | Java | 4,941 | 117 | /*
* Copyright 2007-present the original author or authors.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by... |
69af06d10179410cf23e7e9f40112945ee8cd2dd6cb3e724d44b488fbd3b5d46 | Java | 5,005 | 141 | package fiji.plugin.DOM;
import ij.IJ;
import ij.Prefs;
import ij.plugin.PlugIn;
public class Z_Calculation implements PlugIn
{
SMLAnalysis sml = new SMLAnalysis();
double zfitRangeMin,zfitRangeMax;
double [] fitCoefZ,fitCoefX,fitCoefY;
double [] sdx, sdy, z, x,y, xpx, ypx, sdx_err, sdy_err, z_err;
@Override
... |
f713a8ab8f1fbd7b1b628fff974b323339b8c96ca29c8d62f35be2ea3480e635 | Java | 5,050 | 163 | package org.jeecg.modules.federalml.controller;
import java.util.Arrays;
import java.util.List;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.aspect.annotation.AutoLog;
import org.jeecg.common.system.base.co... |
f5e0059c208e5131f4becdf90a7f48505e0aa26dde0f346ed90d10141cf6f92e | Java | 5,132 | 129 | package org.janelia.colordepthsearch;
import java.io.IOException;
import java.io.InputStream;
import java.util.List;
import java.util.function.Supplier;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.RegExUtils;
import org.janelia.colormipsearch.api.cdmips.MIPImage;
import org... |
2af9bbf4856eedd515e5bd3a3f452e73888017ad134a6bad5ff6759c0c70b2ec | Java | 5,135 | 105 | package org.janelia.colormipsearch.dataio.fs;
import java.io.File;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.nio.file.Paths;
import java.util.Collection;
import java.util.List;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import com.fasterxml.jackson.core.type... |
794062a5b0058472f22eb15d86a7814248d58c496ab141dda799deba5df0d25d | Java | 5,168 | 121 | package org.janelia.colormipsearch.cmd;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import com.beust.jcommander.Parameter;
import com.beust.jcommander.Parameters;
import com.google.common.collect.ImmutableMap;
import org.janelia.colormipsearch.dao.AppendFieldValueHandler;
import ... |
8d0d947dceb4571caf16043a95f068dffa24c738922950d825a2772023bfb593 | Java | 5,172 | 140 | package org.janelia.colormipsearch.cmd_v2;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.List;
import java.util.Set;
import com.beust.jcommander.Parameter;
import com.beust.jcommander.ParametersDelegate;
import org.apache.commons.lang3.StringUtils;
class AbstractColorDepthMatchArgs extends... |
8932d39ba390f9219868e17c4f401336e6b13cad9b13b8d372e7df5d93e5e592 | Java | 5,199 | 180 | package org.janelia.colormipsearch.dataio;
import java.util.Collection;
import java.util.HashMap;
import java.util.HashSet;
import java.util.LinkedHashMap;
import java.util.Map;
import org.apache.commons.collections4.bag.HashBag;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.builder.Equ... |
f15694ad089a81b8664590fc299aa1b4197c0024b45497b2110ed71484a77d8f | Java | 5,282 | 155 | package org.jeecg.modules.federalml.controller;
import static org.jeecg.common.constant.CommonConstant.*;
import java.util.Arrays;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.aspect.annotation.AutoLog;
im... |
791a11480303fe7e0e3bcc18f1b3c8c3a39c1b6a07b5bccd0917deb2f8e642cd | Java | 5,304 | 116 | package org.janelia.colormipsearch.dao.mongo;
import java.util.ArrayList;
import java.util.Collection;
import java.util.List;
import java.util.stream.Collectors;
import com.mongodb.client.model.Filters;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.bs... |
4e7c57665797521f7b4b7da6a952c75d902e885f98cc00f73d54579ea8807417 | Java | 5,343 | 188 | package org.janelia.colordepthsearch;
import java.util.List;
import org.apache.commons.lang3.builder.ToStringBuilder;
/**
* Search parameters for a color depth search with multiple masks.
*
* @author <a href="mailto:rokickik@janelia.hhmi.org">Konrad Rokicki</a>
*/
public class ColorDepthSearchParameters {
f... |
d2421eb83303e3b6551c8711b2d1cf24deeb7127da05700cb2b33fb3bb6eaf7b | Java | 5,343 | 172 | package fiji.plugin.DOM;
import java.io.File;
import java.io.FileWriter;
import java.io.IOException;
import java.text.DecimalFormat;
import java.text.DecimalFormatSymbols;
import ij.IJ;
import ij.Prefs;
import ij.gui.GenericDialog;
import ij.io.SaveDialog;
import ij.plugin.PlugIn;
public class Export_ONI implements ... |
6f7fd2bfc07db2372becf03dcc3f7cccb9ab24cb1b9fcdb7730855103a56f812 | Java | 5,348 | 169 | package org.janelia.colormipsearch.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import org.apache.commons.lang3.StringUtils;
import org.janelia.colormipsearch.cds.GradientAreaGapUtils;
import org.janelia.colormipsearch.dto.AbstractNeuronMetadata;
import org.janelia.colormipsearch.dto.CDMatchedTarget;
im... |
acc46c3423a15a943cb23a6993558345f63eded35ddad0bf264fcf2c79815bb4 | Java | 5,350 | 170 | package org.jeecg.modules.message.controller;
import java.util.Arrays;
import java.util.Map;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.system.base.controller.JeecgController;
import org.jeecg.common.syst... |
86d13fe8374710e463807949a105b3e2e8cc84aef1c24b1dd1ad368d5abae73b | Java | 5,357 | 151 | package de.biovoxxel.toolbox;
import java.awt.AWTEvent;
import ij.IJ;
import ij.ImagePlus;
import ij.Prefs;
import ij.gui.DialogListener;
import ij.gui.GenericDialog;
import ij.plugin.filter.EDM;
import ij.plugin.filter.ExtendedPlugInFilter;
import ij.plugin.filter.PlugInFilterRunner;
import ij.process.... |
51a7f91abc13af0ecfea2cdf24261e153f6d7482292f3dfaa49265837441c567 | Java | 5,397 | 161 | package org.jeecg.modules.system.controller;
import com.baomidou.mybatisplus.core.conditions.query.LambdaQueryWrapper;
import com.baomidou.mybatisplus.core.conditions.query.QueryWrapper;
import com.baomidou.mybatisplus.core.metadata.IPage;
import com.baomidou.mybatisplus.extension.plugins.pagination.Page;
import lomb... |
f99b0dd6278f1261afe36d5961c9cb09d2c3fd4ea1db54925a29a8802a94618c | Java | 5,440 | 152 | package org.jeecg.modules.federalml.controller;
import java.util.Arrays;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.system.base.controller.JeecgController;
import org.jeecg.common.system.query.QueryGenera... |
0632ecb697f413ed700b93d80b0ad5b2f472f95496a11cfc74e5c6ddc8cdd39f | Java | 5,452 | 181 | package fiji.plugin.DOM;
import java.io.File;
import java.io.FileNotFoundException;
import java.util.Scanner;
import ij.IJ;
import ij.Prefs;
import ij.gui.GenericDialog;
import ij.measure.ResultsTable;
import ij.plugin.PlugIn;
import ij.plugin.filter.Analyzer;
public class Import_ONI implements PlugIn {
SMLAnalysi... |
cfb498576c9a6fd9ccd6738ae96315946ec0c4fc7ee74da9ca7c3a72b51d4db0 | Java | 5,476 | 241 | package org.jeecg.modules.system.service;
import com.baomidou.mybatisplus.core.conditions.query.LambdaQueryWrapper;
import com.baomidou.mybatisplus.core.conditions.query.QueryWrapper;
import com.baomidou.mybatisplus.core.metadata.IPage;
import com.baomidou.mybatisplus.extension.plugins.pagination.Page;
import com.baom... |
453a8d10940c343da57fb0ca48593691bbc50ca8b2dabcb8184e84b3ba10a3eb | Java | 5,496 | 174 | package org.jeecg.modules.quartz.service.impl;
import java.util.Date;
import java.util.List;
import org.jeecg.common.constant.CommonConstant;
import org.jeecg.common.exception.JeecgBootException;
import org.jeecg.common.util.DateUtils;
import org.jeecg.modules.quartz.entity.QuartzJob;
import org.jeecg.modules.quartz.... |
4ab301acfc4fe987b6012ce4c833e91732adfddc904e9d6c496ce7e288cc4890 | Java | 5,552 | 156 | package org.janelia.colormipsearch.dao.mongo;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import com.mongodb.ErrorCategory;
import com.mongodb.MongoWriteException;
import com.mongodb.client.MongoCl... |
958540f3f6db6046f7a6f384e23e6c9220dae6add117b91902b39081bf60eb4e | Java | 5,570 | 158 | package org.jeecg.modules.federalml.controller;
import static org.jeecg.common.constant.CommonConstant.*;
import java.util.Arrays;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.aspect.annotation.AutoLog;
im... |
8498d95edb4ac7d4123d51cc509880a4f10ac02b633b2cf184c414cb84e85e16 | Java | 5,629 | 174 | package org.jeecg.modules.system.entity;
import java.io.Serializable;
import java.util.Date;
import com.baomidou.mybatisplus.annotation.IdType;
import com.baomidou.mybatisplus.annotation.TableId;
import com.baomidou.mybatisplus.annotation.TableName;
import io.swagger.annotations.ApiModel;
import io.swagger.annotation... |
6213c9e15166a35c4f25a0bdf280500a88941950e832a0fd7cd473db9cd755e3 | Java | 5,633 | 109 | package org.janelia.colormipsearch.dataio.fs;
import java.io.File;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.nio.file.Paths;
import java.util.Collection;
import java.util.List;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import com.fasterxml.jackson.core.type... |
07966affe7e29f3010ffe1e131d57d8dd8376d04b39670b3ef06f52bd13fa676 | Java | 5,700 | 195 | package org.jeecg.modules.system.util;
import org.apache.commons.codec.binary.Base32;
import org.apache.commons.lang3.RandomStringUtils;
import javax.crypto.Mac;
import javax.crypto.spec.SecretKeySpec;
import java.nio.ByteBuffer;
import java.util.UUID;
public class TotpUtils {
/**
* 时间步长，动态口令变化时间周期(单位秒)
... |
ee791cdafec402164ecb9055a9e5a3befbb583b23017f66a9cb782b134d9233f | Java | 5,762 | 192 | package de.biovoxxel.toolbox;
import java.awt.GridBagConstraints;
import java.awt.GridBagLayout;
import java.awt.Insets;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import javax.swing.JButton;
import javax.swing.JCheckBox;
import javax.swing.JFrame;
import javax.swing.JLabel;
... |
2f7e41532d5a086687d7aa62f4c2314f8b685e47fbe040205482ba3c45b1013a | Java | 5,794 | 134 | package org.janelia.colormipsearch.api_v2;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import org.janelia.colormipsearch.api_v2.cdmips.AbstractMetadata;
import org.janelia.colormipsearch.api_v2.cdsearch.ColorMIPSearchMatchMetadata;
import org.janelia.colormipsearch.results.Item... |
90c506b6af7367b643dc0c70c6a5988b99d5b49ac11b54b12be7d2c6aefb7402 | Java | 5,808 | 159 | package org.janelia.colormipsearch.dao.mongo;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import com.mongodb.ErrorCategory;
import com.mongodb.MongoWriteException;
import com.mongodb.client.MongoCo... |
2151f9746ddb747479975de2446d1bc88af1b1193ef07270506566ebebd07cf4 | Java | 5,847 | 113 | package org.janelia.colordepthsearch;
import java.io.FileInputStream;
import java.util.Arrays;
import java.util.List;
import org.janelia.colormipsearch.api.cdmips.MIPImage;
import org.janelia.colormipsearch.api.cdmips.MIPMetadata;
import org.janelia.colormipsearch.api.cdsearch.ColorDepthSearchAlgorithm;
import org.j... |
ba9f1e3d867ae1aa438771f853084f9f11d65e1c640579a3cdb7db07715ba388 | Java | 5,910 | 138 | package org.janelia.colormipsearch.dao.mongo;
import java.util.ArrayList;
import java.util.Collection;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.lang3.tuple.ImmutablePair;
import org.apache.commons.lang3.t... |
fc252d021700b030b1e4b4aa86cb5df1474bb2798fa3c17d71b355a095ca7c30 | Java | 5,912 | 122 | package org.janelia.colormipsearch.dao.mongo.support;
import java.util.Arrays;
import java.util.List;
import java.util.concurrent.TimeUnit;
import java.util.stream.Collectors;
import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackso... |
34a70afdc437940b14d561dce28d7b7a53825a7c9388e855b863444c5d918b46 | Java | 5,983 | 183 | package org.jeecg.modules.system.controller;
import java.util.Arrays;
import java.util.Date;
import javax.servlet.http.HttpServletRequest;
import com.baomidou.mybatisplus.core.conditions.query.LambdaQueryWrapper;
import io.swagger.annotations.ApiOperation;
import org.apache.commons.lang.StringUtils;
import org.apac... |
e900f1f022ddd29ef66e41202acaed41797e3ac71c5b22780fb0c01e9da0a7e4 | Java | 5,992 | 140 | package de.biovoxxel.toolbox;
import java.awt.AWTEvent;
import java.awt.Checkbox;
import ij.IJ;
import ij.ImageJ;
import ij.ImagePlus;
import ij.Prefs;
import ij.WindowManager;
import ij.gui.DialogListener;
import ij.gui.GenericDialog;
import ij.plugin.ImageCalculator;
import ij.plugin.filter.ExtendedP... |
0c2c612b94cf292de17aa6af7a72b96a30e87cfb527450f2aa583380b87cbe83 | Java | 5,993 | 111 | package org.janelia.colormipsearch.results;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Collections;
import java.util.Comparator;
import java.util.List;
import java.util.Map;
import java.util.concurrent.atomic.AtomicInteger;
import java.util.function.Function;
import java.util.function.Pr... |
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