sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
c5c722fe921a16650add932547fa30c37f336d89e1e7e19ae69dc6e5ef6748a6 | Java | 5,995 | 140 | package org.janelia.colormipsearch.cmd;
import java.security.SecureRandom;
import java.security.cert.X509Certificate;
import java.util.Collections;
import java.util.List;
import java.util.Set;
import java.util.concurrent.TimeUnit;
import java.util.function.Supplier;
import java.util.stream.Stream;
import javax.net.ss... |
0b687b7c0da3cfa7642b69815e13538f0a2232405656e1f55247a59de419a28f | Java | 6,038 | 171 | package org.janelia.colormipsearch.imageprocessing;
import java.util.function.BiFunction;
import java.util.function.Function;
/**
* ColorTransformation - transformations that converts a pixel value into another pixel value
* based only on the pixel type and pixel value, irrespective of the pixel position.
*/
publi... |
b27f6cca6d23f717d84714173e9d7513122d22e4e8f78c07f1b30e8e04f93642 | Java | 6,208 | 119 | package org.janelia.colormipsearch.results;
import java.util.Comparator;
import java.util.List;
import java.util.function.Function;
import java.util.function.Predicate;
import org.janelia.colormipsearch.dto.AbstractMatchedTarget;
import org.janelia.colormipsearch.dto.AbstractNeuronMetadata;
import org.janelia.colormi... |
e8f36e725ef9d45d7dcb608d957565267486f98b51187b3bf0d00f2a8ce08578 | Java | 6,351 | 122 | package org.janelia.colormipsearch.cmd.cdsprocess;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import java.util.Set;
import java.util.concurrent.CompletableFuture;
import java.util.concurrent.Executor;
import java.util.concurrent.ExecutorService;
import java.util.function.Supplier... |
7ad8f669b6bdfc1facc5d6408e1cd786b2690ca9688571fe68d586da40c7ad40 | Java | 6,376 | 156 | package org.janelia.colormipsearch.cmd_v2;
import java.io.File;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.nio.file.FileVisitOption;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.Collections;
import java.util.List;
import java.util... |
385bcde48fdd998536ccea57d220011ab2358e6982b17191ed60bd8ab315bd98 | Java | 6,385 | 180 | package de.biovoxxel.toolbox;
import java.awt.AWTEvent;
import java.awt.Checkbox;
import ij.*;
import ij.ImagePlus;
import ij.gui.DialogListener;
import ij.gui.GenericDialog;
import ij.plugin.ImageCalculator;
import ij.plugin.filter.ExtendedPlugInFilter;
import ij.plugin.filter.GaussianBlur;
import ij.plu... |
96f80e2568d7fd3dc59f492126bd800445fc0c6d671928675cbf82bba4d2f484 | Java | 6,392 | 199 | package org.janelia.colormipsearch.model;
import java.util.HashMap;
import java.util.Map;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonProperty;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.builder.EqualsBuilder;
import org.apache.com... |
c31c06f480af8a1b2c5d1099e9dccaea3efc7b036733e302331c890a8c40a9af | Java | 6,442 | 186 | package org.jeecg.modules.system.controller;
import com.alibaba.fastjson.JSONObject;
import com.baomidou.mybatisplus.core.conditions.query.QueryWrapper;
import com.baomidou.mybatisplus.core.metadata.IPage;
import com.baomidou.mybatisplus.extension.plugins.pagination.Page;
import io.swagger.annotations.Api;
import io.s... |
f58204150e9cf0c29b223f0dfd45a204b71bbe18a0d6fe71e7a88f59e918c80b | Java | 6,443 | 135 | package org.janelia.colormipsearch.cmd;
import java.util.ArrayList;
import java.util.Collection;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import com.beust.jcommander.Parameter;
import com.beust.jcommander.Parameters;
class AbstractGradientScoresArgs e... |
b2e89e8cc0c79301ecc1d205e489a71df58f12482b4606a0acf14c00e912b810 | Java | 6,486 | 184 | package org.jeecg.modules.federalml.controller;
import static org.jeecg.common.constant.CommonConstant.*;
import java.util.Arrays;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.aspect.annotation.AutoLog;
im... |
b9b58487c1294c6219a2869ff50ff809da058279e999af58f7bcb294113e240f | Java | 6,516 | 140 | package org.janelia.colormipsearch.dataio.fs;
import java.io.File;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.Collections;
import java.util.Comparator;
import java.util.List;
import java.util.function.Function;
import java.ut... |
d39ddf3139b74b3d44f8a3dcc9c71f963fba310adc38077c44ff35f3cdd4a90f | Java | 6,516 | 182 | package org.janelia.colormipsearch.imageprocessing;
import java.util.function.BiFunction;
import java.util.function.Function;
/**
* ColorTransformation - transformations that converts a pixel value into another pixel value
* based only on the pixel type and pixel value, irrespective of the pixel position.
*/
publi... |
c7f3aec067dd29c03fae53e40b81330477b77804808e3112d377895738bcd9fd | Java | 6,570 | 221 | package fiji.plugin.DOM;
import java.io.File;
import java.io.FileNotFoundException;
import java.util.Scanner;
import ij.IJ;
import ij.Prefs;
import ij.gui.GenericDialog;
import ij.measure.ResultsTable;
import ij.plugin.PlugIn;
import ij.plugin.filter.Analyzer;
public class Import_TS implements PlugIn
{
SMLAnalysis ... |
280496a678b77417bfcb84c05f960aeb16cfac514988f331ab271cb1cbcb5302 | Java | 6,688 | 179 | package org.jeecg.modules.federalml.controller;
import static java.lang.Math.min;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import javax.servlet.http.HttpServletRequest;
import org.jeecg.common.api.vo.Result;
import org.jeecg.modules.federalml.entity.Algorithm;
import org.jeecg.modules.... |
afac7feeddc94df979ab53334db8aa4f157ad70d274d7c7c032c1802e7a8a38e | Java | 6,719 | 244 | package fiji.plugin.DOM;
//in detect molecules on line 329
//add width and height of original image to the results table
//sml.ptable.addValue("Original_image_size",imp.getWidth());
//sml.ptable.addValue("Original_image_size",imp.getHeight());
import java.util.Arrays;
import ij.IJ;
import ij.Prefs;
import ij.measure... |
b1442e0f132699d5ba1de3d4d15e1268bd02eceddba07288ce9a01390c2ee8aa | Java | 6,755 | 144 | package org.janelia.colormipsearch.dataio.fs;
import java.io.File;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.Collections;
import java.util.Comparator;
import java.util.List;
import java.util.function.Function;
import java.ut... |
b350ee888517945fd9a853ca51413dd76e03d466ac04b2572e61e1d55781a1fe | Java | 6,778 | 158 | package org.jeecg;
import cn.hutool.json.JSONObject;
import com.baomidou.mybatisplus.core.conditions.query.QueryWrapper;
import com.baomidou.mybatisplus.extension.plugins.pagination.Page;
import com.tencentcloudapi.common.Credential;
import com.tencentcloudapi.common.exception.TencentCloudSDKException;
import com.tenc... |
20b560cf339de1a08e54bba40b49753b3c557f269426c75d4e6229ba674f076f | Java | 6,819 | 123 | package org.janelia.colormipsearch.cmd.cdsprocess;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import java.util.Set;
import java.util.concurrent.CompletableFuture;
import java.util.concurrent.Executor;
import java.util.function.Supplier;
import java.util.stream.Collectors;
import ... |
ffd62f4addfd413235ce1fec0c069b6b665a3617a999bf515404889202285352 | Java | 6,874 | 190 | package org.jeecg.modules.online.desform.test;
import com.alibaba.fastjson.JSONObject;
import org.jeecg.JeecgSystemApplication;
import org.jeecg.common.constant.CommonConstant;
import org.jeecg.common.system.util.JwtUtil;
import org.jeecg.common.util.RedisUtil;
import org.jeecg.common.util.RestUtil;
import org.junit.T... |
c0cf8feb2ae028bfa0c3210b49be04e804cc4c983760e89db70f3732d2f8a59b | Java | 6,875 | 207 | package org.jeecg.modules.system.service.impl;
import java.util.Arrays;
import java.util.List;
import java.util.Map;
import com.alibaba.fastjson.JSONObject;
import com.baomidou.mybatisplus.core.conditions.update.LambdaUpdateWrapper;
import com.baomidou.mybatisplus.core.conditions.update.UpdateWrapper;
import org.jeec... |
4626c5ccdbac909e7029af42b153ca9e2e4c23befe6f9dcc24a6e09981afbb52 | Java | 6,879 | 192 | package org.jeecg.modules.online.desform.test;
import com.alibaba.fastjson.JSONObject;
import org.jeecg.JeecgSystemApplication;
import org.jeecg.common.constant.CommonConstant;
import org.jeecg.common.system.util.JwtUtil;
import org.jeecg.common.util.RedisUtil;
import org.jeecg.common.util.RestUtil;
import org.junit.T... |
b36fc9ce75a8b35716165783fdbe1e5de691df28effe06c7dbdfb161c4ab7d8f | Java | 6,934 | 152 | package org.janelia.colormipsearch.cmd_v2;
import java.io.File;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import java.util.stream.Collectors;
import com.beust.jcommander.Parameter;
import com.beust.jcommander.Parameters;
imp... |
8da884423b9599a23d7edaa0cbeb0434444ff84d55923310bcb09464cf7ef9b0 | Java | 6,958 | 179 | package org.janelia.colormipsearch.api_v2.cdsearch;
import java.util.Collections;
import java.util.List;
import java.util.stream.Collectors;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonProperty;
import org.apache... |
1e0f05288192dbed99acad9634f4d5387bd6d3654f7b47b0f97354c864ec019b | Java | 7,039 | 185 | package cn.sdaict.fldatauploader.utils;
import io.lakefs.clients.api.*;
import io.lakefs.clients.api.auth.HttpBasicAuth;
import io.lakefs.clients.api.model.*;
import net.sourceforge.pinyin4j.PinyinHelper;
import net.sourceforge.pinyin4j.format.HanyuPinyinCaseType;
import net.sourceforge.pinyin4j.format.HanyuPinyinOutp... |
ab19afbcd2c3d341d3b8b426188a53718dd465311f6580c96757b3562ed6e8f6 | Java | 7,050 | 129 | package org.janelia.colormipsearch.cds;
import org.janelia.colormipsearch.imageprocessing.ColorTransformation;
import org.janelia.colormipsearch.imageprocessing.ImageArray;
import org.janelia.colormipsearch.imageprocessing.ImageRegionDefinition;
import org.janelia.colormipsearch.imageprocessing.ImageTransformation;
im... |
f4511b690ebf3169917dd3ce9069378f3114e6a5908a2b367f2eedf2ad86c838 | Java | 7,074 | 275 | import javax.swing.*;
import java.awt.*;
import java.awt.event.*;
/**
* Class that handles the edit of a spot. Send information to the controler
* that creates a new Spot intense.
* @author Guillaume ARRAS (Guillaume.Arras@curie.fr)
*/
public class SpotForm extends JDialog{
// Parameters
private static final lon... |
a7b8eff3cb68fb511086745dfeba40b7c584ab71df5db0b25fb949624516916e | Java | 7,094 | 142 | package org.janelia.colormipsearch.results;
import java.io.File;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.util.Collection;
import java.util.Collections;
import java.util.Comparator;
import java.util.List;
import java.util.stream.Collectors;
import com.fasterxml.jackson.core.type.Ty... |
1c6b15e077d44c5bf414114ead1e8a48e6a1bd484a95190ac82073d6fc302cb1 | Java | 7,162 | 173 | //package cn.sdaict.fldatauploader;
//
//import io.lakefs.clients.api.*;
//import org.junit.jupiter.api.Test;
//import org.springframework.boot.test.context.SpringBootTest;
//import io.lakefs.clients.api.auth.*;
//import io.lakefs.clients.api.model.*;
//
//import java.io.File;
//import java.util.LinkedList;
//
//@Sprin... |
f90c1234398e04b98b44ee2bd64c4334593c973239cc68dccb754cf5af1cbf2e | Java | 7,192 | 394 | package org.jeecg.modules.system.model;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.Date;
import java.util.List;
import org.jeecg.modules.system.entity.SysPermission;
public class SysPermissionTree implements Serializable {
private static final long serialVersionUID = 1L;
/**
* id
... |
0b19e38f32e4f052958c7facb1a9d94a9a3dcd971ebb6c7e907bc4c661b34b0f | Java | 7,261 | 155 | package org.janelia.colormipsearch.cds;
import java.util.Collections;
import java.util.HashMap;
import java.util.Map;
import java.util.function.Supplier;
import ij.ImagePlus;
import ij.io.Opener;
import org.janelia.colormipsearch.ImageTestUtils;
import org.janelia.colormipsearch.imageprocessing.ColorTransformation;
i... |
e52418ed5a4ae9f0f7fed90ee1575fadb6ccc19f1eb006d96b15821776f7dad5 | Java | 7,281 | 182 | /*
* Copyright 2019 The FATE Authors. All Rights Reserved.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by a... |
d680c0b5b55ebf2ab47947058c372f026c52b8b4f15351dc1746055502adabf3 | Java | 7,294 | 220 | package org.janelia.colormipsearch.model;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import org.apache.commons.collections4.MapUtils;
import org.janelia.colormipsearch.dto.AbstractNeuronMetadata;
import org.janelia.colormipsea... |
b2a87003cdad72841841d0f8321fa687d9cdca95d0134565f0eab00a9ea722cf | Java | 7,320 | 147 | package org.janelia.colormipsearch.mips;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.Arrays;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Objects;
import j... |
b73c7317fe5c69917541d7bf3de9a22f08e8cf49c2ca28a5f46fe47f91d7fab9 | Java | 7,327 | 179 | package org.janelia.colordepthsearch;
import java.io.IOException;
import java.io.InputStream;
import java.net.URI;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import ... |
f637b906d2e4e519bd7ff66d55e719d7dc49319ffc4e0e6e2ddc6cb5f82b0c55 | Java | 7,327 | 196 | package org.janelia.colormipsearch.api_v2.pppsearch;
import java.util.Collections;
import java.util.Comparator;
import java.util.List;
import java.util.stream.Collectors;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.annotation.J... |
271602cd31bb76569146cd60a7a6b942fc790df3df29f91614d8287f6131e11e | Java | 7,341 | 180 | package org.jeecg.modules.ngalain.service.impl;
import com.alibaba.fastjson.JSONArray;
import com.alibaba.fastjson.JSONObject;
import org.jeecg.common.util.oConvertUtils;
import org.jeecg.modules.ngalain.service.NgAlainService;
import org.jeecg.modules.system.entity.SysPermission;
import org.jeecg.modules.system.mappe... |
e170829c7068e413f39c5705ea3543c1a3165d9559a85e45e30f85644d3ca038 | Java | 7,380 | 221 | package org.janelia.colormipsearch.model;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import org.apache.commons.collections4.MapUtils;
import org.janelia.colormipsearch.dto.AbstractNeuronMetadata;
import org.janelia.colormipsea... |
0321bea93d54c5f45b9f659f073d4ab527aff392e4bdb1a8725076f23033c156 | Java | 7,423 | 133 | package org.janelia.colormipsearch.cds;
import org.janelia.colormipsearch.imageprocessing.ColorTransformation;
import org.janelia.colormipsearch.imageprocessing.ImageArray;
import org.janelia.colormipsearch.imageprocessing.ImageProcessing;
import org.janelia.colormipsearch.imageprocessing.ImageRegionDefinition;
import... |
9e20ce79eb2728ccd937fe29a01b53c5fcf969b27dee8d46b471301b9b5760fc | Java | 7,500 | 221 | package org.jeecg.modules.federalml.controller;
import java.io.IOException;
import java.util.Arrays;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.je... |
14d725bf8b7ccb173e4422ad9d44b050dfd7b39f2c78a8c1d90116675709df6b | Java | 7,576 | 161 | package org.janelia.colormipsearch.dao.mongo.support;
import java.util.Arrays;
import java.util.List;
import java.util.concurrent.TimeUnit;
import java.util.stream.Collectors;
import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackso... |
2d757dbdd2ad12ccce768bc76c505def77712e1e565bbe41ab49768a1515106a | Java | 7,596 | 199 | package org.jeecg.modules.federalml.controller;
import static org.jeecg.common.constant.CommonConstant.*;
import java.util.Arrays;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.aspect.annotation.AutoLog;
im... |
b250b11b232689b8459b6541ac075f3e18c391051d4485bf49c439305f65d797 | Java | 7,621 | 214 | package org.jeecg.modules.system.controller;
import com.alibaba.fastjson.JSONArray;
import com.alibaba.fastjson.JSONObject;
import com.baomidou.mybatisplus.core.conditions.query.QueryWrapper;
import com.baomidou.mybatisplus.core.metadata.IPage;
import com.baomidou.mybatisplus.extension.plugins.pagination.Page;
import ... |
f808927e9ab931fad761875a1c1c6c14a79cba0d3942a914adca16e892ed8da9 | Java | 7,678 | 292 | import java.awt.*;
/**
* Class that gets all the information you need about a spot
* @author Guillaume ARRAS (Guillaume.Arras@curie.fr)
* @version 15/05/2009
*/
public class Spot {
//Parameters
private int x;//x localisation in the gel
private int y;//y localisation in the gel
private String name;// name of the... |
0d71f221f39d31a70cfd2cb7e5f5f4c60e342f2ecbb5c5865b9dd55bcd86c0a4 | Java | 7,719 | 168 | package org.janelia.colormipsearch.cmd_v2;
import java.io.File;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.Collections;
import java.util.List;
import java.util.Map;
import java.util.Set;
import jav... |
e33ea2c0df4145857eb0fdc262e19e19f21fc6959e132e1cc01f18fa074bdd78 | Java | 7,780 | 227 | package org.janelia.colormipsearch.cmd.jacsdata;
import java.io.Serializable;
import java.util.Set;
import com.fasterxml.jackson.annotation.JsonProperty;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.builder.ToStringBuilder;
impor... |
b5224dafae0bef279d337d11a557f565b34a24255eecde80d08d57966ca94454 | Java | 7,796 | 174 | package org.janelia.colormipsearch.dao.mongo;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import javax.annotation.Nullable;
import com.mongodb.client.MongoDatabase;
imp... |
f1033e585a2d3119f0bca205802e0668182af29f1741e56eb24d87b5b390ef5d | Java | 7,804 | 175 | package org.janelia.colormipsearch.dao.mongo;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import javax.annotation.Nullable;
import com.mongodb.client.MongoClient;
impor... |
a5dda383ae07374a0605591d9a08ce426de012688e35be97713924260f2072b8 | Java | 7,816 | 220 | package de.biovoxxel.toolbox;
import java.awt.AWTEvent;
import java.awt.Color;
import ij.IJ;
import ij.ImagePlus;
import ij.WindowManager;
import ij.gui.DialogListener;
import ij.gui.GenericDialog;
import ij.plugin.filter.ExtendedPlugInFilter;
import ij.plugin.filter.PlugInFilterRunner;
import ij.process.ImageProces... |
c8d19c106992ff6195a91e26586f7ec46a291687b53a1c84816e503873696e41 | Java | 7,924 | 224 | package fiji.plugin.DOM;
import java.io.File;
import java.io.FileWriter;
import java.io.IOException;
import java.text.DecimalFormat;
import java.text.DecimalFormatSymbols;
/** Export to ThunderSTORM format
* **/
import ij.IJ;
import ij.Prefs;
import ij.gui.GenericDialog;
import ij.io.SaveDialog;
import ij.plugin.Pl... |
34a5cd41ed864782d0913cfe4ed62494f47098fec736f5707137606261cf07f2 | Java | 8,013 | 244 | package org.janelia.colormipsearch.dao;
import java.util.ArrayList;
import java.util.Collection;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org... |
959f0b02703511f66bb4bce1a12989f0571718dc3c32b60ae6606f3dd462c90d | Java | 8,014 | 246 | package de.biovoxxel.toolbox;
import ij.IJ;
import ij.ImagePlus;
import ij.WindowManager;
import ij.gui.GenericDialog;
import ij.plugin.filter.PlugInFilter;
import ij.process.ByteProcessor;
import ij.process.ImageProcessor;
import ij.process.ImageStatistics;
/*
* Copyright (C), Jan Brocher / BioVoxxel. All rights r... |
f54537e37b34103f221a5a2aa126c37118597ba9041fa121cd379474cc94ec9f | Java | 8,067 | 241 | package org.jeecg.modules.system.service.impl;
import com.baomidou.mybatisplus.core.conditions.query.LambdaQueryWrapper;
import com.baomidou.mybatisplus.core.metadata.IPage;
import com.baomidou.mybatisplus.extension.plugins.pagination.Page;
import com.baomidou.mybatisplus.extension.service.impl.ServiceImpl;
import lom... |
a0e25ce709f8eecdbad1e7c8e120b669b95ab7b8b8ade3a41b6aec83d969a520 | Java | 8,103 | 220 | package org.jeecg.modules.system.controller;
import cn.hutool.core.util.CharsetUtil;
import cn.hutool.core.util.HexUtil;
import cn.hutool.crypto.SecureUtil;
import cn.hutool.crypto.symmetric.SymmetricAlgorithm;
import cn.hutool.crypto.symmetric.SymmetricCrypto;
import com.alibaba.fastjson.JSONArray;
import com.alibaba... |
9288baf906b58136a10c96d49d3adab1ac27b2439a8f3139795cf03b095ae941 | Java | 8,148 | 177 | package org.janelia.colormipsearch.results;
import java.util.Arrays;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import org.janelia.colormipsearch.model.CDMatchEntity;
import org.janelia.colormipsearch.model.TestEMNeuronEntity;
import org.janelia.colormipsearch.model.TestLMNeuronE... |
4b6ee0b776417b287ceb7dc2fdd4f3e2ae5830b660ff7e6522c8a8b19c8cc185 | Java | 8,223 | 198 | package org.jeecg.modules.system.service.impl;
import java.util.*;
import javax.annotation.Resource;
import com.alibaba.fastjson.JSONObject;
import org.jeecg.common.api.dto.message.BusTemplateMessageDTO;
import org.jeecg.common.constant.CommonConstant;
import org.jeecg.common.constant.WebsocketConst;
import org.jeec... |
957fafce48770defc93b8f59fe393acff08cdd828854c4e6caac77531083fb0b | Java | 8,310 | 137 | package org.jeecg.modules.monitor.domain;
import java.util.HashMap;
import java.util.Map;
public class RedisInfo {
private static Map<String, String> map = new HashMap<>();
static {
map.put("redis_version", "Redis 服务器版本");
map.put("redis_git_sha1", "Git SHA1");
map.put("redis_git_dirty", "Git dirty flag");
... |
d05c9b2a6de091290fd80d596164bdb3c8cec9a8092eb23a4c362fbe0cedadeb | Java | 8,327 | 189 | package org.janelia.colormipsearch.cmd.jacsdata;
import java.util.Collections;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import javax.ws.rs.client.Client;
import com.fasterxml.jackson.core.type.TypeRefere... |
7e79a297aad3e7c3470ef659ffe4135e7b9754fce938d79c1edb2faa4ca940ad | Java | 8,358 | 201 | package de.biovoxxel.toolbox;
import java.awt.Rectangle;
import java.io.File;
import ij.IJ;
import ij.ImagePlus;
import ij.ImageStack;
import ij.WindowManager;
import ij.gui.GenericDialog;
import ij.plugin.filter.PlugInFilter;
import ij.process.ImageProcessor;
import ij.util.Tools;
/*
* Copyright (... |
75e21f8aa817cfb5417f1523469e8a916209f255ba2b3d08ad4355227a071058 | Java | 8,378 | 259 | package de.biovoxxel.toolbox;
import java.awt.AWTEvent;
import java.awt.Color;
import ij.IJ;
import ij.ImagePlus;
import ij.Prefs;
import ij.WindowManager;
import ij.gui.DialogListener;
import ij.gui.GenericDialog;
import ij.plugin.filter.ExtendedPlugInFilter;
import ij.plugin.filter.GaussianBlur;
import ij.plugin.f... |
5026585c7637a60643797fc9cabdbcc9fd6785a6ddae8e170479365a88b60560 | Java | 8,414 | 170 | package org.janelia.colormipsearch.cmd_v2.cmsdrivers;
import java.io.Serializable;
import java.util.Collection;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.function.Supplier;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import co... |
fa095e67636963905409a1a1519158bbb6c830e6ebdfa6188f07f2d5f7c3ea81 | Java | 8,575 | 371 | package org.jeecg.modules.system.model;
import org.jeecg.modules.system.entity.SysDepart;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.Date;
import java.util.List;
import java.util.Objects;
/**
* <p>
* 部门表 存储树结构数据的实体类
* <p>
*
* @Author Steve
* @Since 2019-01-22
*/
public class S... |
2971a5aa1146c87397f19b11b730c51af89a300e27910c638cbe2df3bf4d52b4 | Java | 8,677 | 281 | package org.janelia.colormipsearch.dto;
import java.util.HashMap;
import java.util.Map;
import java.util.Set;
import java.util.function.BiFunction;
import java.util.function.Function;
import javax.validation.GroupSequence;
import javax.validation.constraints.NotBlank;
import javax.validation.constraints.NotEmpty;
imp... |
8ede18d39f9636459274c17763ddaab650e8ece201f0d283cd3297d3c380138a | Java | 8,699 | 172 | package org.janelia.colormipsearch.dataio.db;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import org.janelia.colormipsearch.dao.NeuronMatchesDao;
import org.janelia.colormipsearch.dao.NeuronMeta... |
095f5b7b6a56885b00eb6aa7b2815ebde3dfd3428688cbcbb6fe9d3235e6b7d3 | Java | 8,754 | 232 | package org.jeecg.modules.system.test;
import com.baomidou.mybatisplus.core.conditions.query.QueryWrapper;
import org.jeecg.JeecgSystemApplication;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.util.PasswordUtil;
import org.jeecg.common.util.oConvertUtils;
import org.jeecg.modules.federalml.controller... |
f61fd76736b6704ea23ee9a4d284eb7d7893a616cb711e590fba9c1020002132 | Java | 8,789 | 233 | package de.biovoxxel.toolbox;
import java.awt.AWTEvent;
import java.awt.Rectangle;
import java.util.Arrays;
import ij.IJ;
import ij.ImagePlus;
import ij.gui.DialogListener;
import ij.gui.GenericDialog;
import ij.plugin.filter.ExtendedPlugInFilter;
import ij.plugin.filter.PlugInFilterRunner;
import ij.... |
9ae57def878b58874f26f7b8643ca402eee425ab6f888d13813510dad6e8fef3 | Java | 8,794 | 283 | package org.janelia.colormipsearch.dataio;
import java.util.Collection;
import java.util.HashMap;
import java.util.HashSet;
import java.util.LinkedHashMap;
import java.util.List;
import java.util.Map;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.collections4.bag.HashBag;
import or... |
0ec1acfb05f7610e45867a4980f32f96b18c274f1cc5147ed80b21953d401c85 | Java | 8,974 | 232 | package org.jeecg.modules.federalml.controller;
import java.util.Arrays;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.jeecg.common.api.vo.Result;
import org.jeecg.common.aspect.annotation.AutoLog;
import org.jeecg.common.system.base.controller.JeecgControlle... |
1cafb7798839f2f01a0374e99c647e31834368104d8d1fd2bfd651efe7ffe15b | Java | 9,002 | 186 | package org.janelia.colormipsearch.dao.mongo;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import java.util.stream.Collectors;
import com.google.common.base.Splitter;
import com.mongodb.client.model.Filters;
import org.apache.commons.collections4.Colle... |
5c5adf4aca6f1995e608f8ceedf90e50927d1f147406728d3bbbb4bd8ed357dd | Java | 9,037 | 235 | package org.janelia.colormipsearch.mips;
import java.io.File;
import java.io.IOException;
import java.io.InputStream;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.function.Supplier;
import java.uti... |
7039bdd04a3dd29db782b1c311c7ec0822c1c98cc810846d0f52aad4a7b24abc | Java | 9,166 | 264 | package org.jeecg.modules.system.controller;
import java.io.IOException;
import java.io.UnsupportedEncodingException;
import java.net.URLDecoder;
import java.util.Arrays;
import java.util.List;
import java.util.Map;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import o... |
a2cf58200505b2a4a481bfb27575e074a4fcfdf68d03adde7fb6ff0f4ed83395 | Java | 9,174 | 261 | package org.janelia.colormipsearch.model;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Map;
import java.util.Set;
import javax.annotation.Nullable;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonProperty;
import org.apache.commons.collections4... |
7870486e670a9b3d3548365fe92acb3cb47f69220e544fcac4b5606325044d22 | Java | 9,180 | 208 | package org.janelia.colormipsearch.api_v2.cdsearch;
import java.io.Serializable;
import org.apache.commons.lang3.builder.EqualsBuilder;
import org.apache.commons.lang3.builder.HashCodeBuilder;
import org.apache.commons.lang3.builder.ToStringBuilder;
import org.janelia.colormipsearch.api_v2.cdmips.MIPMetadata;
/**
*... |
f2363ee7c062de97bb9cf4f274356c34cdf170578f65763b404d2a22a0ffec70 | Java | 9,252 | 300 | package org.janelia.colormipsearch.dto;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.function.BiFunction;
import javax.validation.GroupSequence;
import javax.validation.constraints.NotBlank;
import javax.validation.constraint... |
601d671d91bf6eeadb7d27a702e5e4b2cb5c015c96fe7df56ae54d412e18ab97 | Java | 9,268 | 279 | package org.jeecg.modules.quartz.controller;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.Map;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.shiro.authz.annotation.RequiresRole... |
48c0cac887bb9ff1ee56ee6b60224aa0d1302af8859d94c1daf3adeadb21c59e | Java | 9,314 | 183 | package org.jeecg.modules.kafka;
import java.util.ArrayList;
import java.util.Date;
import java.util.List;
import java.util.Optional;
import org.apache.kafka.clients.consumer.ConsumerRecord;
import org.jeecg.common.system.util.JwtUtil;
import org.jeecg.modules.federalml.entity.CollectFileMeta;
import org.jeecg.module... |
7ef8ac9729b8a57e16334e6f638d8d2d55a60e4b7e485c61c76b1219c3e90408 | Java | 9,342 | 166 | package org.janelia.colormipsearch.cmd.dataexport;
import java.nio.file.Path;
import java.util.Collections;
import java.util.Comparator;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.concurrent.CompletableFuture;
import java.util.concurrent.Executor;
import java.util.function.BiCo... |
5d2078ddf43a14b8a457be20361015e32ddd0e5276f99e1f290a04e363ee78b1 | Java | 9,356 | 261 | package de.biovoxxel.toolbox;
import ij.IJ;
import ij.ImagePlus;
import ij.gui.GenericDialog;
import ij.gui.Overlay;
import ij.gui.Roi;
import ij.measure.Measurements;
import ij.measure.ResultsTable;
import ij.plugin.filter.Analyzer;
import ij.plugin.filter.ParticleAnalyzer;
import ij.plugin.filter.PlugIn... |
e4cc9c83ae2b92b0ee3c381a90391621230c3f5099bfcbec1c01cd7685ab0fc8 | Java | 9,423 | 237 | package org.janelia.colormipsearch.mips;
import java.io.IOException;
import java.io.InputStream;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.Map;
import java.util.Set;
import java.util.function.Supplier;
import java.util.stream.Collectors;
import java.util.zip.Zi... |
319ce3fdefc1ef356596fe8056c3825a3fcd132b8e983c822008202f7c3dae2f | Java | 9,443 | 252 | package org.jeecg.modules.system.controller;
import java.util.Arrays;
import java.util.Date;
import javax.servlet.http.HttpServletRequest;
import com.github.xiaoymin.knife4j.annotations.ApiOperationSupport;
import com.github.xiaoymin.knife4j.annotations.DynamicParameter;
import com.github.xiaoymin.knife4j.annotation... |
64a6ce7e037c037eb23810c93293568211e1eb21e2629ba08fed90c2ae480440 | Java | 9,496 | 252 | package de.biovoxxel.toolbox;
import ij.IJ;
import ij.ImagePlus;
import ij.Prefs;
import ij.WindowManager;
import ij.gui.GenericDialog;
import ij.gui.Roi;
import ij.measure.Measurements;
import ij.measure.ResultsTable;
import ij.plugin.filter.Analyzer;
import ij.plugin.filter.ParticleAnalyzer;
import ij.plugin.filter... |
4ea5499b0109a52299402dd1e89a3353100a998d44a17882b82aa6262b45f29f | Java | 9,563 | 269 | package org.jeecg.modules.system.service.impl;
import com.baomidou.mybatisplus.core.conditions.query.LambdaQueryWrapper;
import com.baomidou.mybatisplus.core.conditions.query.QueryWrapper;
import com.baomidou.mybatisplus.extension.service.impl.ServiceImpl;
import org.jeecg.common.constant.CacheConstant;
import org.jee... |
39b828d6ef38bf716bb5bdad8cc03afb3b35b06bdb50d76270ca3d2c6ea2958c | Java | 9,581 | 167 | package org.janelia.colormipsearch.cmd.dataexport;
import java.nio.file.Path;
import java.util.Collections;
import java.util.Comparator;
import java.util.List;
import java.util.Map;
import java.util.Objects;
import java.util.concurrent.CompletableFuture;
import java.util.concurrent.Executor;
import java.util.function.... |
11c929f3229092dc56ea29712c431fb180e08867943f4bd5bfb0fce7e5e1b59b | Java | 9,720 | 174 | package org.janelia.colormipsearch.cmd.dataexport;
import java.nio.file.Path;
import java.util.Collections;
import java.util.Comparator;
import java.util.List;
import java.util.Map;
import java.util.Objects;
import java.util.concurrent.CompletableFuture;
import java.util.concurrent.Executor;
import java.util.function.... |
b81ea71ec2f0c95395a9bfbda0789fbca521f997899391362d244e0e80ed2ad1 | Java | 9,751 | 239 | package org.janelia.colormipsearch.dao.mongo;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.LinkedHashMap;
import java.util.List;
import java.util.Map;
import java.util.Objects;
import java.util.Set;
import java.util.stream.Collectors;
... |
34d00cabe0b2c408ed9015f28753eee036da929b3165c29acd36fc991f1cb650 | Java | 9,765 | 219 | package org.janelia.colormipsearch.dao.mongo;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.Date;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
im... |
2cfac2303d5f7b409fad1c0adf21d274f1c016ac2743a2431ea5fc7de0fda043 | Java | 9,825 | 216 | package org.janelia.colormipsearch.cmd_v2;
import java.io.File;
import java.io.IOException;
import java.io.OutputStream;
import java.io.RandomAccessFile;
import java.io.UncheckedIOException;
import java.nio.channels.Channels;
import java.nio.channels.FileChannel;
import java.nio.channels.FileLock;
import java.nio.chan... |
277cb0375b2bc5540f414e594cc4e611632dcb26a3365945708edb0131fa7026 | Java | 9,925 | 322 | import java.awt.event.*;
import javax.swing.event.*;
import javax.swing.*;
import netscape.javascript.*;// To compile it -> neet to add plugin.jar to your classpath
/**
* Class reprensting the controler of data that are used by the Applet (MVC structure).
* This class gets what the ImageApplet sends and updates the I... |
58afefce3fd8ef8a4bc465e9aa52a9b4d96657b7d14ed20e24ec8f124e018b1c | Java | 9,928 | 179 | package org.janelia.colormipsearch.api_v2.pppsearch;
import java.io.File;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import java.util.Spliterators;
import java.util.function.Function;
import java.ut... |
4c58d922e641282eaa50eb15e06f1d1e8248b8d129ac570c721a9591bc5f48da | Java | 10,033 | 200 | package org.janelia.colormipsearch.cmd_v2;
import java.util.List;
import java.util.function.Supplier;
import java.util.stream.Collectors;
import com.beust.jcommander.Parameter;
import com.beust.jcommander.Parameters;
import org.apache.commons.lang3.StringUtils;
import org.janelia.colormipsearch.api_v2.cdmips.MIPMeta... |
b600f9a4b5e2911fd53397b69c5349d0a6ebbb6e5c71000124b07ab3feb19142 | Java | 10,127 | 252 | package cn.sdaict.fldatauploader.controller;
import cn.hutool.json.JSONUtil;
import cn.sdaict.fldatauploader.entity.ResourceTypeEnum;
import cn.sdaict.fldatauploader.service.FileUploadService;
import cn.sdaict.fldatauploader.service.ObjectStoreService;
import cn.sdaict.fldatauploader.utils.HttpClientPool;
import cn.sd... |
5a3b6f47ef061223d9a6721fb61264e5b2c7ec442d434d81b734f08f8cec53ab | Java | 10,143 | 171 | package org.janelia.colormipsearch.api_v2.cdsearch;
import org.janelia.colormipsearch.imageprocessing.ColorTransformation;
import org.janelia.colormipsearch.imageprocessing.ImageArray;
import org.janelia.colormipsearch.imageprocessing.ImageProcessing;
import org.janelia.colormipsearch.imageprocessing.ImageTransformati... |
664921771f9af049a3a34a49a3af3fdb4ed00e377c6984197a8a1bcece83451e | Java | 10,145 | 274 | package org.janelia.colormipsearch.imageprocessing;
import java.io.InputStream;
import java.util.Arrays;
import javax.imageio.ImageIO;
import ij.ImagePlus;
import ij.io.FileInfo;
import ij.io.Opener;
import ij.io.RandomAccessStream;
import ij.process.ByteProcessor;
import ij.process.ColorProcessor;
import ij.process... |
f7a143c2fc798ebc3361a90b8e10c33e487fbd41f8f9a28b98f1e087a0e43e12 | Java | 10,193 | 180 | package org.janelia.colormipsearch.cmd.dataexport;
import java.nio.file.Path;
import java.util.Collections;
import java.util.Comparator;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.concurrent.CompletableFuture;
import java.util.concurrent.Executor;
import java.util.function.BiCo... |
7af860e73fe7acc4bc1047c0aa2d75649d2f45aede5e9be8f96384a0de923260 | Java | 10,283 | 310 | package cn.sdaict.fldatauploader.utils;
import io.minio.*;
import lombok.extern.slf4j.Slf4j;
import org.springframework.web.multipart.MultipartFile;
import java.io.File;
import java.io.FileInputStream;
import java.io.InputStream;
import java.net.URLDecoder;
import java.util.HashMap;
import java.util.Map;
import java.... |
129ef1f5ab489367941c70468c429a6cee3e695e5043c425ebdcf02542df56c6 | Java | 10,358 | 247 | package org.janelia.colormipsearch.cds;
import java.util.EnumSet;
import java.util.Map;
import java.util.Set;
import java.util.function.Supplier;
import javax.annotation.Nonnull;
import org.janelia.colormipsearch.imageprocessing.ColorTransformation;
import org.janelia.colormipsearch.imageprocessing.ImageArray;
impor... |
0b16d6402348200c39ac80cf8afcfd67a21bc6490e98f9577c860bbada30eaef | Java | 10,370 | 265 | package org.jeecg.modules.federalml.controller;
import static org.jeecg.common.constant.CommonConstant.*;
import java.util.*;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.http.client.methods.HttpPost;
import org.apache.shiro.SecurityUtils;
import org... |
4b94cbf49c1f23440d3c774b86b9bacf3fd2d1df2111ddfadfc1c94543b68bb6 | Java | 10,396 | 368 | package org.janelia.colormipsearch.api_v2.pppsearch;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.function.BiConsumer;
import java.util.stream.Collectors;
import com.fasterxml.jackson.annotation.JsonAutoDetect;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.f... |
4f6526ec8074ca2c30914866f65b250104cd83ab615641f20450bf443305ba6b | Java | 10,405 | 189 | package org.janelia.colormipsearch.ppp;
import java.io.File;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import java.util.Spliterators;
import java.util.function.Functio... |
2ba1d5dbcb4981dcdf39c35237347952f1d571ee920b3a73f2f28ecb0128d609 | Java | 10,435 | 201 | package org.janelia.colormipsearch.results;
import java.util.Collections;
import java.util.Comparator;
import java.util.EnumSet;
import java.util.List;
import java.util.function.Function;
import java.util.function.Predicate;
import java.util.stream.Collectors;
import org.janelia.colormipsearch.model.AbstractMatchEnti... |
c078f24177a38cc066be99a4098f5b793af87b67502ece983cfbc19d8b0f4f10 | Java | 10,469 | 331 | package de.biovoxxel.toolbox;
import java.util.Arrays;
import ij.ImagePlus;
import ij.gui.GenericDialog;
import ij.plugin.filter.PlugInFilter;
import ij.process.ImageProcessor;
/*
* Copyright (C), Jan Brocher / BioVoxxel. All rights reserved.
*
* All Macros/Plugins were written by Jan Brocher/BioVoxxe... |
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