sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
68815568bac8937b63412d13f0a43a87cee58a45855097aad79e415eb53d3f3c | Java | 991 | 32 | package test.integration;
import java.io.File;
import java.nio.file.Files;
import java.nio.file.Path;
import org.junit.jupiter.params.ParameterizedTest;
import org.junit.jupiter.params.provider.MethodSource;
import test.integration.cli.Cli;
import test.integration.cli.CliScenario;
public class OutputTest {
@Pa... |
8cc077b30e67c0d677f1d08bb46e030272b6703d4322ce621982b81a2a33c11d | Java | 992 | 32 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
9968b49a6f57e98961362dcc2e756b1a205d086c1ec3f31af8744f9f4edbd006 | Java | 998 | 28 | /**
* Copyright Copyright 2010-17 Simon Andrews
*
* This file is part of FastQC.
*
* FastQC is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your... |
4cc98811c59c0e93d278eacdcaf19196321d5450bb915d6406453716ed9ba2ce | Java | 999 | 34 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
f385396f73dcbfbd138b133e0e2cdb320fa847da09218c3086bab5fa8d270d64 | Java | 1,003 | 30 | package net.schmizz.sshj.examples;
import net.schmizz.sshj.SSHClient;
import net.schmizz.sshj.xfer.FileSystemFile;
import java.io.File;
import java.io.IOException;
/** This example demonstrates uploading of a file over SCP to the SSH server. */
public class SCPUpload {
public static void main(String[] args)
... |
2cab32a43dc88ee8f0144a0c0a452ea4b383687395cb8e41991a0413086b7e13 | Java | 1,024 | 34 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
aa7ca26cfe493f34b7a5ff79db849691b5a761cc480377d4eef1c48ae78f8710 | Java | 1,028 | 36 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
3d9d07712abdf511557609875b887e0272ab0022d9782ae7fbdf9a98781d8fb0 | Java | 1,072 | 30 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
d10bfd3ac5c296af5e8e24cabaa86bd6d52c2e166c69e7e8b3f8b1d2d4545505 | Java | 1,110 | 34 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
44ebee33c24a8eb9730055d9e24b309a7630c7c9f3a8a9fe3034169a15004ff0 | Java | 1,112 | 36 | /**
* Copyright Copyright 2010-17 Simon Andrews
*
* This file is part of FastQC.
*
* FastQC is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your... |
d4f97703ab22b4f93d46f363647c19b82369935db1f723e73dfe262e17471db3 | Java | 1,119 | 33 | /**
* Copyright Copyright 2010-17 Simon Andrews
*
* This file is part of FastQC.
*
* FastQC is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your... |
a691ad3d4123491105c7250d928c11a9aab1b8bc0d4f77acc5ec991d5f3dba37 | Java | 1,120 | 35 | package test.integration;
import java.util.regex.Pattern;
import org.jsoup.Jsoup;
import org.jsoup.nodes.Document;
/**
* Utilities for scrubbing dates and normalizing HTML content.
*/
public final class HtmlContentHelpers {
private HtmlContentHelpers() {}
// Matches: Mon 22 Sep 2025 (or Tue/Wed..., Jan-De... |
db5ef84e268a8f861cb4e6aabb3c86869c12d527b259fc2bc72b82194a1d2cea | Java | 1,127 | 37 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
4321b28ff19a8d98481238b7f083288951e0c06c08ec197598b856a22456b30e | Java | 1,129 | 37 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
e55f135a150fe327be998504eacfaae460355c3dab6819ffc801b6b4b32b8aa9 | Java | 1,146 | 40 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
544b32c2e39035c1f47b3baa673a89bd02d6df1223fae02a88382871c326038f | Java | 1,149 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
6cd5c9cfb58c93184d54a02bac14424e26d693c7eb0cf93269268a4a35abe3ba | Java | 1,153 | 40 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
38f974a6c9cb2706408a1bbf0ea2c30a93358dd70a17cead46ef86dacd886a3d | Java | 1,158 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
44b94b72629985167560d630641f245eda1094d39c5e8fa96885e179a079b83a | Java | 1,160 | 44 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
26cd1dc72fd5b32e9fed0032795c378b0ad8b81090bda394afea80b44705a83d | Java | 1,162 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
3368995ef018eb88b2d47ed850996049925b2a614d9e92c9b199526a9ae1c495 | Java | 1,165 | 40 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
0532dd570577a0f842d48ce8ab61fd533570b6369b5b0b2d0e05b45ad4a229a7 | Java | 1,167 | 42 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
67fb76f70f0bab2eebac3dc18af01476b2b6da2984015730d8b32cd76090051e | Java | 1,167 | 42 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
ab3e5de3bce88cbdee83d93a33a2d09c062273a28ec279cbc5ec9996a5c54ee8 | Java | 1,167 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
129fedf19462b47fda97cffa99acd6b2904c235a8a6962be86cfd2ae82731b60 | Java | 1,168 | 40 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
b4ea03c0483efa2cb61eec5988b878d657ea5b95c2ea624a821ab68b730c4988 | Java | 1,168 | 40 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
bc78d84958b542acbb3dfaa583316113019f10d14a23b6a8b1422e0efe3dce2a | Java | 1,168 | 36 | package net.schmizz.sshj.examples;
import net.schmizz.sshj.SSHClient;
import net.schmizz.sshj.common.IOUtils;
import net.schmizz.sshj.connection.channel.direct.Session;
import net.schmizz.sshj.connection.channel.direct.Session.Command;
import java.io.IOException;
import java.util.concurrent.TimeUnit;
/** This exampl... |
cfd8098c44ac25d419b764214aa9a4be378c0b739a8e1c047a8b9d3f29ac487b | Java | 1,168 | 40 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
230d1012f4fa2e7d065af87c398948ac6232c437e21a8a586219d0f4d09b80b3 | Java | 1,172 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
3149f592bce2088005e2bb891addfe3dc9d3cb8c0a982d2925d6d778b54ffddf | Java | 1,172 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
8acbbf668d50e9490f4482b22f8192bcc28e24a6685cdeae6c6c91c2b79d31d6 | Java | 1,172 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
b1c43f72afdbb7f819dfeab3f609ceccc8bb5fd126c69bcf172d55bd4a58e64d | Java | 1,172 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
c7f135a6dd885fff9fd22b530349d9a85f39ef35f707e7c417a207bedbf9d092 | Java | 1,172 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
fdb9e5e826ee78f1cf160379204e9828ac1f12ccaade39b28cd8f14fdd61291a | Java | 1,172 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
98cee0bedaf9135fc9c1808bf8b109408e282b317de49de4b549e21487090f8b | Java | 1,181 | 38 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
e48d77f96b2bf5a639da2880d70052fe705920972f58a22d3de59a84a55caf16 | Java | 1,185 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
be571a0b08e30aaf7d79bbf6af811b52555516cae39df7d0b222da3aa9bb4c0a | Java | 1,189 | 40 | /**
* Copyright Copyright 2010-17 Simon Andrews
*
* This file is part of FastQC.
*
* FastQC is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your... |
09d761d362c0366566a112cf40cbe712075e586cebe4b7c33c5d37116965879e | Java | 1,191 | 39 | /**
* Copyright Copyright 2010-17 Simon Andrews
*
* This file is part of FastQC.
*
* FastQC is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your... |
e63cfa5e8fa8f5fc03726c453c73331b2b08bf8400b13393b6fe9bc1ed5ba767 | Java | 1,192 | 38 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
12d4aa2f2844a6a06d7cb440737499309fe6e2f8dc934a1b1c2b7497d9c70e63 | Java | 1,193 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
136c049debfc2d021e93963cd370652a40c66cccd81dd4c6dfc79aa9196a9a5d | Java | 1,193 | 35 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
26cdfd7baacd92e2423b5176ea3acfb410e1fe83b07c8e514568bf52291938d5 | Java | 1,193 | 37 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
c5dc5dcf1cab87ad734845667f4109ff59221db0314163bfd6fe4a48798f0b2b | Java | 1,193 | 40 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
e0ef80b317aec2c92e8f3dc2dcf2ba661b90e5f54561009fbc619a7e8e82fcea | Java | 1,196 | 39 | /**
* Copyright Copyright 2010-17 Simon Andrews
*
* This file is part of FastQC.
*
* FastQC is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your... |
b17b6ce1a8e350cf7bd8c5b046d9a8b8fccdcabbe4fc2cb98472cc7de5e9c23a | Java | 1,200 | 33 | package test.integration.cli;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertNotEquals;
import static org.junit.jupiter.api.Assertions.assertTrue;
public class CliResult {
private final CliScenario scenario;
private final int exitCode;
pri... |
ea76ae3e103e5ec318e6660e0952377af3aa7a59e36593886d9fccfc2fad1377 | Java | 1,200 | 40 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
2eb3a3d542523b824c74df12c4a4db20a4880bdad00be2d09b67b5786caef468 | Java | 1,205 | 39 | /**
* Copyright Copyright 2010-17 Simon Andrews
*
* This file is part of FastQC.
*
* FastQC is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your... |
25f3ea298ee81f0b45adaaf073108bd8b3a27c6ecfe2dcae1758c8cc861f4952 | Java | 1,207 | 40 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
70c9c982f3fd8513ca433fcf9afa441d247b803fef81ec3f58cff7c30558a330 | Java | 1,210 | 37 | package test.data;
import java.io.File;
import java.io.IOException;
import java.util.stream.Stream;
public class TestCases {
public static String TEST_DATA_DIR = "test/data/";
/// Returns a File object for the specified test FastQ file
public static File getTestFastQFile(String testCaseName) throws IOEx... |
c509bdde3e8b75025a49beddf8b72bfff22b4a25bf509415a3c4786764b09318 | Java | 1,224 | 33 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
001e7d3013817da7622d6fb9130db68629934aa18629814df5b700147df02e87 | Java | 1,227 | 29 | /*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may ... |
9339da0ba251a4cdb629e82c6240cc11f5268c1898e4a372eaf79156d72056cd | Java | 1,230 | 44 | /**
* Copyright Copyright 2007-15 Simon Andrews
*
* This file is part of FastQC.
*
* Conclave is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at yo... |
811588ee6466bdb72dad519b61f44c5755c99137df7794a967b703dd148d27b2 | Java | 1,236 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
fc55cca831b4d41a614fd04fb5b24a0bc2f3ca8ed190f47d4c9e484900ebcbe8 | Java | 1,244 | 36 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
513ef15c980609e4a81c64dab36967f47362dddfbcd662ca81b5e34b0788f6e2 | Java | 1,251 | 32 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
a949fe8e8d4b671cd0751d54a6824c93157e37e6689595532ac2cc52d61cd0cc | Java | 1,260 | 39 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
e421d0d481d04dd9a015e792952a06aea033a8d84cdc68fd96ee8c9f817ff61e | Java | 1,267 | 46 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
2293058aae9f373648abd43adc2c5aa91fd047f2412a514c4f174ccd56b7c8be | Java | 1,276 | 36 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
4ec9211ad2a0836c6df3c82d6cadfe88309468dfa2a64d385d14fc9028461408 | Java | 1,281 | 34 | /*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may ... |
6df6861fd95e45d0547713859442b5f628b8855ba1ad39841c70776d1c995592 | Java | 1,289 | 31 | /**
* Copyright Copyright 2010-17 Simon Andrews
*
* This file is part of FastQC.
*
* FastQC is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your... |
c1e35e59521205828adf1932de5391baf28aa0cc36c4307a6d6716877b7dbd5d | Java | 1,298 | 43 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
f7ee472f21412a7f3c69bf1d03e2d6bb2113a15515bba655a0763496bf739131 | Java | 1,300 | 36 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
772bf67a6a6fb59a2d8f6b387d995492e429fd065eb1fcec7b8f0eef767324b8 | Java | 1,307 | 42 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
fb0d40ead37d3d1d71c6fa11691e46291d70c0c60c730055e277de9f73ec0fe9 | Java | 1,313 | 38 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
8fa9f59949d781de7bc47241ed83aab266e83742c530ddc781dc763268caaa41 | Java | 1,314 | 44 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
c6d5dbf742dfa43d6d6c004d8d5eb7cea48246b7006ee5236e7380c0bf7aa84e | Java | 1,349 | 37 | package net.schmizz.sshj.examples;
import net.schmizz.keepalive.KeepAliveProvider;
import net.schmizz.sshj.DefaultConfig;
import net.schmizz.sshj.SSHClient;
import net.schmizz.sshj.connection.channel.direct.Session;
import net.schmizz.sshj.transport.verification.PromiscuousVerifier;
import java.io.IOException;
import... |
8aaa15fb60e88fd1e09b6d26fcba138fd758d21a67f4475582978763982ec1fd | Java | 1,350 | 49 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
414e014519b8c6a6840cdade700e94057cff6e4c8eff47ee4d19a48e24160330 | Java | 1,361 | 42 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
30e886236b3c21080f0891b839eb1b8dd31944b2dd19b326b837cfac48417e5b | Java | 1,369 | 50 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
8ff7cf03b7fa06ef8bf0d954d9e72741d48364383039c8eb502bb26c6705eec7 | Java | 1,375 | 38 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
9ae3677f5068f384e4af4123a46846ee3742660eb64f1b260bb46ae851caa5d1 | Java | 1,376 | 46 | /**
* Copyright Copyright 2010-17 Simon Andrews
*
* This file is part of FastQC.
*
* FastQC is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your... |
a89d489d6ef7d3764a804227e7e372dcb9dfb50603aa8a8337cb1d0fa02c5878 | Java | 1,379 | 40 | package test.integration;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import test.integration.cli.Cli;
import test.integration.cli.CliScenario;
public class ThreadsTest {
@Test
public void shows_error_when_value_is_zero() throws Exception {
Cli
.Execute(new ... |
ac63738d18d8f67a69ec8aefeae13268509bfd21c64020dad574878ab2d8ec08 | Java | 1,388 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
337c19b45f8aca5ff6aefa3aeae843b3591e1e94cf6882f3ae169b6bfe6ce2ac | Java | 1,396 | 41 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
052365037b27ee9d9e8ae38be65ff13f612a95dd5851825886d8345338aaff72 | Java | 1,405 | 36 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
4c0dc542b26cccbd842102355da447b75ea065b91b079e1f669d9ff7a7eb130b | Java | 1,414 | 39 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
44d67ca083c9995c480a97ca2f33790406ebc8fcb82132162e634ccef57bf0f1 | Java | 1,421 | 42 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
4039190cece1d78b254e35fa1e9264c0ca290651acae4d1b609effa4d3491c5a | Java | 1,432 | 43 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
f985dca5da2651c852d3de82dd148939b17be8cc57e1a1300bd1b1bf1e091dd9 | Java | 1,436 | 44 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
dbdfaf2d313b6ca4e6109a4edef78f4b3423fda864ef5d1f79bbc9215e792ceb | Java | 1,448 | 57 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
c9f2bf8928f161df2dee9765766b4ef445833371e3af93ed3bca2ccbbd8528f1 | Java | 1,465 | 51 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
68108f71df2d8ec9046bb3833f7fd860a217bf87c83a827a40f2e1ec6b373ad4 | Java | 1,467 | 40 | /*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may ... |
6dd44be2d822428aec148c21672714d3aa0daf6689e1879bbe0504ea1e2112fa | Java | 1,467 | 46 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
39f40d9ce6673b8fafd2dbf67f4ebd18127371db770049b94f22c9e922bfd96e | Java | 1,472 | 47 | package net.schmizz.sshj.examples;
import net.schmizz.sshj.SSHClient;
import net.schmizz.sshj.connection.channel.direct.LocalPortForwarder;
import java.io.IOException;
import java.net.InetSocketAddress;
import java.net.ServerSocket;
/**
* This example demonstrates local port forwarding, i.e. when we listen on a par... |
6d163b4f4ee03b09e4e5b80fb4ec7dbe48ffe330c592f6c1a77d31d8b63cc0e5 | Java | 1,479 | 47 | package test.ui.Modules;
import java.io.File;
import javax.swing.JPanel;
import java.awt.*;
import java.awt.image.BufferedImage;
import org.junit.jupiter.params.ParameterizedTest;
import org.junit.jupiter.params.provider.MethodSource;
import uk.ac.babraham.FastQC.Modules.BasicStats;
import uk.ac.babraham.FastQC.Se... |
21f512fbd4dce869fd33ac0d3b390a03a24c4819f66df2e23a437155333cdcf2 | Java | 1,488 | 55 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
8899e74b866440978ddcf7008884e18ebb81d8d5a02d19900c5806e6e9b2718f | Java | 1,494 | 44 | /*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may ... |
88ceb3a02217b4d7a9a92aa7c6796607285653094a7ec222d6a4c7afa8928a5c | Java | 1,518 | 49 | /**
* Copyright Copyright 2014-17 Simon Andrews
*
* This file is part of FastQC.
*
* FastQC is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your... |
b482fcbcf9891afa28e7117942f240d6fcb8dd334f70e5de777cc00915fb5468 | Java | 1,522 | 42 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
15a277de8c586f9307a6b3dba96eba66ed57ad6c53ffd0b03dd3e392bdff7827 | Java | 1,526 | 70 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
23a0498cc723b503b799aadd26d3bac854ca93a2ca167c42285c5a569263adf9 | Java | 1,531 | 58 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
ea1f54deb56085dcc02ad1d8b81535de74be5017220971cdc50d7fa80ccc174d | Java | 1,541 | 46 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
349ab00bc3401c0acb11c58d8b22efd93a8f0802f36a0bae7c01d5c1aae38e28 | Java | 1,553 | 45 | package test.integration.cli;
import static test.data.TestCases.TEST_DATA_DIR;
public class CliScenario {
public static String TEST_OUT_DIR = "test/integration/output/";
public CliScenario(String[] parameters) {
Parameters = parameters;
}
public CliScenario(String name, String[] parameters... |
da3d93d331f7a944be33711c527cb93e4a49e61c6999e70f892fee2345a357e5 | Java | 1,558 | 46 | package net.schmizz.sshj.examples;
import net.schmizz.sshj.SSHClient;
import net.schmizz.sshj.connection.channel.forwarded.RemotePortForwarder.Forward;
import net.schmizz.sshj.connection.channel.forwarded.SocketForwardingConnectListener;
import java.io.IOException;
import java.net.InetSocketAddress;
/**
* This exam... |
8066dffdb983dea736051905eec4c1a2ace3f6ae54925ebc3a35bdfcf78e7bc2 | Java | 1,565 | 49 | /**
* Copyright Copyright 2010-17 Simon Andrews
*
* This file is part of FastQC.
*
* FastQC is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your... |
6e5d5d20f4e9b61dacc6820e55b3da6ea1ce46b3330cdf230287bd2d7fdcac7f | Java | 1,575 | 59 | package utility;
import org.kohsuke.args4j.Option;
public class CmdArgs
{
@Option(name = "-model", usage = "Specify model", required = true)
public String model = "";
@Option(name = "-corpus", usage = "Specify path to topic modeling corpus")
public String corpus = "";
@Option(name = "-vectors", usage = "Speci... |
e0c2541a24118945576fc9c18d732f28585269b88a3d5c4032b0320078cfc31e | Java | 1,597 | 33 | package test.unit.Modules;
import org.junit.jupiter.api.Test;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertFalse;
import static org.junit.jupiter.api.Assertions.assertTrue;
import uk.ac.babraham.FastQC.Modules.BasicStats;
public class BasicStatsTes... |
397c95ffced2bb9dab271b290989de181ad5d1270e7f17c0a69898423f96329c | Java | 1,598 | 55 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
438c88a235bf997d1660ecd629cdfea6a17e702f445011908307737c7d86996d | Java | 1,607 | 47 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
8e170ad836679a33ead58c2395800d7f8764e055d67a26b2ff13a785b69e4e35 | Java | 1,621 | 45 | /*
* Copyright (C)2009 - SSHJ Contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
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